Metagenome Family F078884

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078884
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	89 residues
Representative Sequence	RPMQRTGKKYFIYPDSSRNQVYVGGPKEYETYVQLHPEHRVADAQEAQKAASAYRMKQADAMRKATARDLSDPFLGVSWADLGW
Number of Associated Samples	102
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.75 %
% of genes near scaffold ends (potentially truncated)	94.83 %
% of genes from short scaffolds (< 2000 bps)	89.66 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (74.138 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (10.345 % of family members)
Environment Ontology (ENVO)	Unclassified (45.690 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.71% β-sheet: 8.93% Coil/Unstructured: 55.36%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13091	PLDc_2	6.03
PF04392	ABC_sub_bind	4.31
PF01261	AP_endonuc_2	2.59
PF00583	Acetyltransf_1	1.72
PF01594	AI-2E_transport	1.72
PF13441	Gly-zipper_YMGG	1.72
PF01814	Hemerythrin	1.72
PF00497	SBP_bac_3	0.86
PF01734	Patatin	0.86
PF08281	Sigma70_r4_2	0.86
PF06742	DUF1214	0.86
PF00535	Glycos_transf_2	0.86
PF13302	Acetyltransf_3	0.86
PF13396	PLDc_N	0.86
PF00211	Guanylate_cyc	0.86
PF00939	Na_sulph_symp	0.86
PF00313	CSD	0.86
PF06580	His_kinase	0.86
PF02321	OEP	0.86
PF13899	Thioredoxin_7	0.86
PF00484	Pro_CA	0.86
PF07883	Cupin_2	0.86
PF12974	Phosphonate-bd	0.86
PF00931	NB-ARC	0.86
PF07690	MFS_1	0.86
PF03881	Fructosamin_kin	0.86
PF00689	Cation_ATPase_C	0.86
PF00326	Peptidase_S9	0.86
PF09955	DUF2189	0.86
PF00702	Hydrolase	0.86
PF07885	Ion_trans_2	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.31
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.72
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.86
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.86
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.86
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	0.86
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.86
COG3001	Fructosamine-3-kinase	Carbohydrate transport and metabolism [G]	0.86
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	0.86
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.86
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.86
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.86
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.14 %
Unclassified	root	N/A	25.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.93 %
Unclassified	root	N/A	25.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.72 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	37.93 %
Unclassified	root	N/A	25.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.31 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.72 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	19.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.90 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	4.31 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	4.31 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.59 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.86 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.86 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.72 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.86 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.86 %
Lamprocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis	0.86 %
Thiodictyon	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon	0.86 %
Chitinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	0.86 %
Curvibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter	0.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	1.72 %
Candidatus Thiodictyon syntrophicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon → Candidatus Thiodictyon syntrophicum	0.86 %
Lamprocystis purpurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	0.86 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.86 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	0.86 %
unclassified Curvibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter	0.86 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.86 %
Chitinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.86 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	19.83 %
Variovorax sp. YR216	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	1.72 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.86 %
Curvibacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp.	0.86 %
Candidatus Thiodictyon syntrophicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon → Candidatus Thiodictyon syntrophicum	0.86 %
Lamprocystis purpurea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	0.86 %
Thiocapsa bogorovii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	0.86 %
Methylibium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	0.86 %
Chitinimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	0.86 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320006\|FACEOR_FYWIORV02I13DH	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	511	Open in IMG/M
2162886012\|MBSR1b_contig_9888438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	829	Open in IMG/M
3300001213\|JGIcombinedJ13530_108836506	Not Available	545	Open in IMG/M
3300001978\|JGI24747J21853_1013251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	850	Open in IMG/M
3300003995\|Ga0055438_10288239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	513	Open in IMG/M
3300004050\|Ga0055491_10218724	Not Available	522	Open in IMG/M
3300004156\|Ga0062589_101168641	Not Available	734	Open in IMG/M
3300004463\|Ga0063356_103244622	Not Available	701	Open in IMG/M
3300004480\|Ga0062592_102126713	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300004778\|Ga0062383_10615225	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300005329\|Ga0070683_100015843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Methylibium	6630	Open in IMG/M
3300005347\|Ga0070668_100477078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1076	Open in IMG/M
3300005353\|Ga0070669_101570442	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300005355\|Ga0070671_100079122	All Organisms → cellular organisms → Bacteria → Proteobacteria	2748	Open in IMG/M
3300005367\|Ga0070667_100190200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1818	Open in IMG/M
3300005526\|Ga0073909_10509890	Not Available	583	Open in IMG/M
3300005539\|Ga0068853_100090120	All Organisms → cellular organisms → Bacteria → Proteobacteria	2695	Open in IMG/M
3300005563\|Ga0068855_101285915	Not Available	758	Open in IMG/M
3300005575\|Ga0066702_10888785	Not Available	531	Open in IMG/M
3300005615\|Ga0070702_100090484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1855	Open in IMG/M
3300005616\|Ga0068852_102001463	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005833\|Ga0074472_10749215	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300005841\|Ga0068863_100160261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2155	Open in IMG/M
3300005841\|Ga0068863_101614108	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300005842\|Ga0068858_100043647	All Organisms → cellular organisms → Bacteria → Proteobacteria	4158	Open in IMG/M
3300005842\|Ga0068858_100618835	All Organisms → cellular organisms → Bacteria → Proteobacteria	1051	Open in IMG/M
3300005842\|Ga0068858_100755525	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300005842\|Ga0068858_102137572	Not Available	553	Open in IMG/M
3300006196\|Ga0075422_10555296	Not Available	527	Open in IMG/M
3300006237\|Ga0097621_100472382	All Organisms → cellular organisms → Bacteria → Proteobacteria	1132	Open in IMG/M
3300006358\|Ga0068871_100324708	All Organisms → cellular organisms → Bacteria → Proteobacteria	1356	Open in IMG/M
3300006358\|Ga0068871_100677637	All Organisms → cellular organisms → Bacteria → Proteobacteria	943	Open in IMG/M
3300006797\|Ga0066659_10448138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1025	Open in IMG/M
3300006903\|Ga0075426_10177311	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300007076\|Ga0075435_100664189	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300009148\|Ga0105243_11035361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	825	Open in IMG/M
3300009174\|Ga0105241_12063681	Not Available	562	Open in IMG/M
3300009177\|Ga0105248_12132797	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300009177\|Ga0105248_12395173	Not Available	601	Open in IMG/M
3300010412\|Ga0136852_10951856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	818	Open in IMG/M
3300012198\|Ga0137364_10816376	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300012212\|Ga0150985_119036952	Not Available	607	Open in IMG/M
3300012354\|Ga0137366_10777148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	680	Open in IMG/M
3300012469\|Ga0150984_104885343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1335	Open in IMG/M
3300012469\|Ga0150984_109463725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Curvibacter → unclassified Curvibacter → Curvibacter sp.	603	Open in IMG/M
3300012519\|Ga0157352_1072473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	560	Open in IMG/M
3300012951\|Ga0164300_10122649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1177	Open in IMG/M
3300012986\|Ga0164304_10083581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1854	Open in IMG/M
3300012989\|Ga0164305_10825844	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300013297\|Ga0157378_11313381	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300014055\|Ga0119878_1153555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	608	Open in IMG/M
3300014969\|Ga0157376_11883461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	635	Open in IMG/M
3300014969\|Ga0157376_12526686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	553	Open in IMG/M
3300015077\|Ga0173483_10311153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	775	Open in IMG/M
3300015200\|Ga0173480_10017432	All Organisms → cellular organisms → Bacteria → Proteobacteria	2960	Open in IMG/M
3300015259\|Ga0180085_1147095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	706	Open in IMG/M
3300015371\|Ga0132258_10665789	All Organisms → cellular organisms → Bacteria → Proteobacteria	2619	Open in IMG/M
3300015373\|Ga0132257_100346719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1794	Open in IMG/M
3300015373\|Ga0132257_104300391	Not Available	518	Open in IMG/M
3300015374\|Ga0132255_100544681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Chitinimonas	1710	Open in IMG/M
3300015374\|Ga0132255_103735486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	647	Open in IMG/M
3300017792\|Ga0163161_10324116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1219	Open in IMG/M
3300018060\|Ga0187765_10211155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1126	Open in IMG/M
3300018081\|Ga0184625_10330272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	794	Open in IMG/M
3300018084\|Ga0184629_10378564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	744	Open in IMG/M
3300018433\|Ga0066667_11739201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Lamprocystis → Lamprocystis purpurea	561	Open in IMG/M
3300018476\|Ga0190274_10049654	All Organisms → cellular organisms → Bacteria → Proteobacteria	3026	Open in IMG/M
3300025903\|Ga0207680_11315955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	514	Open in IMG/M
3300025906\|Ga0207699_11021360	Not Available	611	Open in IMG/M
3300025907\|Ga0207645_10555277	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	779	Open in IMG/M
3300025908\|Ga0207643_10000415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	28167	Open in IMG/M
3300025912\|Ga0207707_10474657	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300025924\|Ga0207694_11759413	Not Available	521	Open in IMG/M
3300025930\|Ga0207701_10374388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1229	Open in IMG/M
3300025931\|Ga0207644_10811381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	783	Open in IMG/M
3300025960\|Ga0207651_11500584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	607	Open in IMG/M
3300025964\|Ga0210127_1022750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	729	Open in IMG/M
3300026116\|Ga0207674_11462308	Not Available	653	Open in IMG/M
3300026121\|Ga0207683_11523884	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300026142\|Ga0207698_11782546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. YR216	631	Open in IMG/M
3300027877\|Ga0209293_10471623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	656	Open in IMG/M
3300027887\|Ga0208980_10810636	Not Available	523	Open in IMG/M
3300027897\|Ga0209254_10306340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1213	Open in IMG/M
3300028381\|Ga0268264_10012945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6860	Open in IMG/M
3300028381\|Ga0268264_10542729	All Organisms → cellular organisms → Bacteria → Proteobacteria	1139	Open in IMG/M
3300031720\|Ga0307469_12112722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiodictyon → Candidatus Thiodictyon syntrophicum	548	Open in IMG/M
3300031834\|Ga0315290_11393323	Not Available	574	Open in IMG/M
3300031847\|Ga0310907_10576890	Not Available	610	Open in IMG/M
3300031873\|Ga0315297_10895883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	737	Open in IMG/M
3300031918\|Ga0311367_12065016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	549	Open in IMG/M
3300031938\|Ga0308175_102522133	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031997\|Ga0315278_11300369	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300032000\|Ga0310903_10727328	Not Available	538	Open in IMG/M
3300032003\|Ga0310897_10461142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	611	Open in IMG/M
3300032053\|Ga0315284_12462570	Not Available	508	Open in IMG/M
3300032118\|Ga0315277_10977868	Not Available	776	Open in IMG/M
3300032163\|Ga0315281_10777325	Not Available	990	Open in IMG/M
3300032163\|Ga0315281_11801824	Not Available	591	Open in IMG/M
3300032173\|Ga0315268_12300236	Not Available	553	Open in IMG/M
3300032205\|Ga0307472_102175204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa → Thiocapsa bogorovii	559	Open in IMG/M
3300032275\|Ga0315270_10765155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	634	Open in IMG/M
3300033158\|Ga0335077_11594259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	621	Open in IMG/M
3300033412\|Ga0310810_10751382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	893	Open in IMG/M
3300033416\|Ga0316622_101432202	Not Available	807	Open in IMG/M
3300033418\|Ga0316625_102540904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	519	Open in IMG/M
3300033419\|Ga0316601_102022758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	581	Open in IMG/M
3300033482\|Ga0316627_100441503	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300033483\|Ga0316629_11597384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	534	Open in IMG/M
3300033487\|Ga0316630_10173319	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300033513\|Ga0316628_100784191	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300033521\|Ga0316616_100511318	All Organisms → cellular organisms → Bacteria → Proteobacteria	1380	Open in IMG/M
3300033521\|Ga0316616_103941327	Not Available	559	Open in IMG/M
3300034129\|Ga0370493_0229212	Not Available	625	Open in IMG/M
3300034176\|Ga0364931_0130543	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.90%
Host-Associated	Host-Associated	42.24%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	42.24%
Terrestrial	Environmental → Terrestrial	37.93%
Aquatic	Environmental → Aquatic	18.97%
Wastewater	Engineered → Wastewater	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	36.21%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.10%
Freshwater	Environmental → Aquatic → Freshwater	10.34%
Marine	Environmental → Aquatic → Marine	4.31%
Sediment	Environmental → Aquatic → Sediment	4.31%
Roots	Host-Associated → Plants → Roots	2.59%
Peat	Environmental → Terrestrial → Peat	0.86%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.62%
Lake	Environmental → Aquatic → Freshwater → Lake	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.03%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.31%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.86%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	7.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.03%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.59%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.59%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.72%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.86%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.34%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.03%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.45%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.59%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.59%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.72%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.72%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.72%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.86%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.86%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.86%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.86%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.86%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Sewage Treatment Plant	Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Sewage Treatment Plant	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320006	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300003995	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D2	Environmental	Open in IMG/M
3300004050	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLA_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014055	Sewage treatment plant microbial communities from Vermont, USA - ANOX_W	Engineered	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025964	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300034129	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_16	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORE_6027180	2032320006	Soil	KKFFVYPDASKNQIYVGGPAEYDAYLKLHPEEQQRVQSARDAAAKESAYRAKQTAAMQAATARDLSDPFLGASWADLGW
MBSR1b_0182.00007520	2162886012	Miscanthus Rhizosphere	PDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
JGIcombinedJ13530_1088365061	3300001213	Wetland	KFYVYPDAPRKQVYVGGPKEYAAYRELHPGPQPTAEDAAVKASAYRGKQAETMRSATARDLSDPFLGVTWADLGW*
JGI24747J21853_10132512	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	VRGLPAGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0055438_102882391	3300003995	Natural And Restored Wetlands	DWVRGLPPGKIRPMQRTGKKLFIYPDAANHQIYVGGPKEYDAYVQLHPEHRAAGAQQAAREASAYRGKQDNAMRNATARDLSDPFLGASWADLGW*
Ga0055491_102187241	3300004050	Natural And Restored Wetlands	RPMQRTGKKYFIYPDSSRNQVYVGGPKEYETYVQLHPEHRVADAQEAQKAASAYRMKQADAMRKATARDLSDPFLGVSWADLGW*
Ga0062589_1011686411	3300004156	Soil	KYFIYPDAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0063356_1032446222	3300004463	Arabidopsis Thaliana Rhizosphere	KQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0062592_1021267132	3300004480	Soil	KYFIYPDSARNQIYVGGPMEYESYARLHPEHRIADLQQATKEQSAYRGKQADAMEKASARDLSNPFLGATWADLGW*
Ga0062383_106152252	3300004778	Wetland Sediment	PPGKIRAMQRTGKKYYIFPDAARNQVFVGGPKEYEAYAQLHPEHRVADATKTVREGSAYRAKQENAMQSATARDLSDPFLGASWADLGW*
Ga0070683_1000158437	3300005329	Corn Rhizosphere	YFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0070668_1004770784	3300005347	Switchgrass Rhizosphere	PMQRNGKKFYIYPDPSRNQIYVGGPHEYERYRQLHPQTQKSASEADTRAYRLKQDEVMRNATARDLSNPFLGASWADLGW*
Ga0070669_1015704422	3300005353	Switchgrass Rhizosphere	YFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTKAAKDASAYRAQQTDEMKQASARDLSDPFLGVTWGDLGW*
Ga0070671_1000791225	3300005355	Switchgrass Rhizosphere	KIRPMQRTGRKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVADSKKAAKDASAYRAKQTDEMKQASARDASDPFLGATWADLGW*
Ga0070667_1001902001	3300005367	Switchgrass Rhizosphere	GKIRPMQRTGKKFFIYPDATRNQVYVGGPKEYEAYVALHPENGVADAQKAAREASAYRAKQSEAMQKATARDLSDPFLGASWADLGW*
Ga0073909_105098901	3300005526	Surface Soil	GGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0068853_1000901201	3300005539	Corn Rhizosphere	MQRTGKKYFIYPDAFRNQVYVGGPAQYDAYKELHPQGQSAQDAAANASAYRGKQDAAMRKATARDLTDPFLGASWADLGW*
Ga0068855_1012859151	3300005563	Corn Rhizosphere	GKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0066702_108887851	3300005575	Soil	TTKVQEEWVRKLPAGKIRPMQRTGKKYFIYPDSSRNRVFVGGPTEYETYVQLHPENRVADAGKAQIAASEYRTKQADAMQKATARDLSNPFLGASWADLGW*
Ga0070702_1000904843	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	KYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0068852_1020014631	3300005616	Corn Rhizosphere	KKYFIYPDASRNQVYVGGPAQYDAYKELHPQGQSAQDAAANASAYRGKQDAAMRKATARDLTDPFLGASWADLGW*
Ga0074472_107492151	3300005833	Sediment (Intertidal)	ERQLLDAGFKVLVATTKVQEEWVHKLPPGKIRPMQRTGKKYFIYPDPSRNQIYVGGPKEYETYVQLHPENRVADAQEAQIAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW*
Ga0068863_1001602614	3300005841	Switchgrass Rhizosphere	QLLELGFKVLVATTTVQEKWVKGLAPGQIRPMQRNGKKFYIYPDPSRNQIYVGGPHEYERYRQLHPQTQKSASEADTRAYRLKQDEVMRNATARDLSNPFLGASWADLGW*
Ga0068863_1016141082	3300005841	Switchgrass Rhizosphere	LAPGKFRPVQRNGKKFFIYPDAAKSQIYVGGPAEYAAYRKLHPDGQQSMQDVANKENAYRGKQAAAMQAATAHDLSDPFLGATWADLGW*
Ga0068858_1000436476	3300005842	Switchgrass Rhizosphere	PVQQEWVKTLPAGAIRKMQRNGKKYFIYPDAAKSQVYVGGPKEYDAYRKLHPEDTQAATKAASKERSARLKQEDAMRSATARDASDPFLGHTWADFGY*
Ga0068858_1006188352	3300005842	Switchgrass Rhizosphere	LGFKVLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW*
Ga0068858_1007555252	3300005842	Switchgrass Rhizosphere	FRPVQRNGKKFFIYPDAAKSQNYVGGPAEYAAYRKLHPDGQQSTQDVANKENAYRGKQAAAMQAATAHDLSDPFLGATWADLGW*
Ga0068858_1021375721	3300005842	Switchgrass Rhizosphere	AGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0075422_105552961	3300006196	Populus Rhizosphere	EDWVRGLPAGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0097621_1004723822	3300006237	Miscanthus Rhizosphere	TPSVDESELLKLGFKVLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW*
Ga0068871_1003247082	3300006358	Miscanthus Rhizosphere	SNLGFKVLVATTKVQQDWVRSLPPGKIRSMQRTGKKYFIYPDASKNQIYVGGPAEYAAYQKLHPQTQQSAQDAAAKTSAYRGKQDAAMREATARDLTDPFLGASWADLGW*
Ga0068871_1006776372	3300006358	Miscanthus Rhizosphere	PVDKRALSDAGFTVLTATTKVQEDWVRGLPPGKIRPMQRTGKKYFIYPDAPAKQIYVGGPREYNAYVEHHPEHRVADSKKVAKDASAYRAKQTDEMKQASARDLSDPYLGASWADLGW*
Ga0066659_104481382	3300006797	Soil	MQRTGKKFFVYPDASKNQIYVGGPAQYDAYLKLHPEEQQRVQSARDAVTKESAYRAKQTAAMQAATGRDLSDPFLGASWADLGW*
Ga0075426_101773111	3300006903	Populus Rhizosphere	SLPRGQIRPMQRTGKKFFVYPDAPKNQIYVGGPAEYDAYLKLHPEEQQRVQSARDAAAKESAYRAKQTAAMEAATARDLSDPFLGASWADLGW*
Ga0075435_1006641892	3300007076	Populus Rhizosphere	VQQDWVRSLPPSHIRPMQRTGKKFFIYPDASKNQVYVGGPAEYYAYLKLHPEEQRRVQSARDAATKESAYRAKQTAAMQAATARDLSDPFLGASWADLGW*
Ga0105243_110353611	3300009148	Miscanthus Rhizosphere	VQRSWVKGLPAGKFRAMQRTGQKFFIYPDAPGSQVYVGGPAEYDAYLKLHPENAVADAAAVTREASAYRKQQSEAMQKATARDNSDPWLGLSWSDLGW*
Ga0105241_120636812	3300009174	Corn Rhizosphere	LPPGKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0105248_121327971	3300009177	Switchgrass Rhizosphere	LAPGKFRPLQRNGKKFVIYPEAAKTQIYVGGPAEYDAYLKLHPEARQSMQDVANKENAYRGKQAAAMQAATAHDLSDPFLGATWADLGW*
Ga0105248_123951731	3300009177	Switchgrass Rhizosphere	RAMQRTGKKYFIYPDSPRNQIYVGGPNEYDGYVRLHPEHRIADLQQAAKEQSAYRGKQADAMEKASARDLSDPFLGATWADLGW*
Ga0136852_109518562	3300010412	Mangrove Sediment	MQRTGKKYFVYPDAANDRILVGGPGQYEAYRQLHPEGATSPQDAAARASAHRAKQDAAMRKATARDLSDPFLGVTWTDLGW*
Ga0137364_108163762	3300012198	Vadose Zone Soil	VATTKVQQDWVRSLPPGHIRPMQRTGKKFFIYPDASRNQIYVGGPAEYDAYLKLHPEEQRRVQSARDAATKESAYRAKQTAAMQAATARDLSDPFLGASWADLGW*
Ga0150985_1190369522	3300012212	Avena Fatua Rhizosphere	VRGLPAGKIRPMQRTGKKYFIYPDAPARQIYVGGPKEYNAYVARHPEHRVADSTKVAKDASAYRAKQTEEMKEASARDLSDPYLGASWADLGW*
Ga0137366_107771482	3300012354	Vadose Zone Soil	LVAKTKVQEDWVRGLPPGKIRPMQRTGKKFYIYPDASRNQIYVGGPKEYEAYVQLHLEHRAAGAQQAAEASAYRSKQGDAMRKATARDLSDPFLGASWADLGW*
Ga0150984_1048853431	3300012469	Avena Fatua Rhizosphere	QRTGKKYFIYPDAPARQIFVGGPKEYDAYVQRHPEHRVADSKKAANDASAYRAKQTDAMKEASARDLSDPFLGATWADLGW*
Ga0150984_1094637252	3300012469	Avena Fatua Rhizosphere	VLTATTKLQEDWVRGLPAGRLRPMQRTGKKYFIYPDAPAKQILVGGPKEYDAYVQRHPEHRVADSKKVAKDASAYRAKQTDEMKQASARDLSDPYLGASWADLGW*
Ga0157352_10724732	3300012519	Unplanted Soil	GKKYFIYPDASRNQIYVGGPNEYEAYAQLHPEHRVADLQQSAREQSAYRGKQADAMEKASARDLSNPFLGATWADLGW*
Ga0164300_101226492	3300012951	Soil	GKIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0164304_100835811	3300012986	Soil	FIYPDAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0164305_108258441	3300012989	Soil	PAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW*
Ga0157378_113133811	3300013297	Miscanthus Rhizosphere	SELLKLGFKVLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW*
Ga0119878_11535551	3300014055	Sewage Treatment Plant	VQEAWVKRLPPGELRPMQRNGKKYFIYPDASRNQVYVGGPQEYDAYVQLHPDSRKDPQDAANKSSAYRKKQDETMRKATARDLSDPFLGVTWADLGW*
Ga0157376_118834612	3300014969	Miscanthus Rhizosphere	TTVQEKWVKGLAPGQIRPMQRNGKKFYIYPDAGRNQIYVGGPQEYERFRQLYPETQKGTSEADTRAYRLKQDEVMRNATARDLSNPFLGASWADLGW*
Ga0157376_125266862	3300014969	Miscanthus Rhizosphere	SMQRTGKKYFIYPDASKNQIYVGGPAEYAAYQKLHPQTQQSAQDAAAKTSAYRGKQDAAMREATARDLTDPFLGASWADLGW*
Ga0173483_103111531	3300015077	Soil	PGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0173480_100174321	3300015200	Soil	DAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW*
Ga0180085_11470951	3300015259	Soil	ATTKVQQDWVRGLPPGKIRPMQRTGKKFYIYPDASRNQIYVGGPKEYEAYVQLHPENRAAGAQEAAKEASAYRLKQDDVMRKATAHDLSDPFLGASWADLGW*
Ga0132258_106657894	3300015371	Arabidopsis Rhizosphere	IYPDAPRNQIYVGGPAEYEAYRKLHPEQQSSQDVANKESAYRGKQAAAMSAATAHDLSDPFLGASWADLGW*
Ga0132257_1003467191	3300015373	Arabidopsis Rhizosphere	TGKKYFIYPDAAKNQIYVGGPKEYEAYAQLHPEHRVANAEQAAKEASAYRGKQDKVTREATARDLSDPFLGASWADLGW*
Ga0132257_1043003911	3300015373	Arabidopsis Rhizosphere	QLLDSGFKVLVATTKVQQEWVHGLPPGKIRAMQRTGKKYFIYPDASRKQIYVGGPKEYEAFAQRHPEHRVADLQQSAREQSAYRGKQADAMEKASARDLSNPFLGATWADLGW*
Ga0132255_1005446813	3300015374	Arabidopsis Rhizosphere	EWVRGLPPGKIRAMQRTGKKYFIYPDAPRNQIYVGGPKEYEAYVQLHPEHRVADLQRAAKEQSVYRGKQADAMEKASARDLSNPFLGVTWADLGW*
Ga0132255_1037354861	3300015374	Arabidopsis Rhizosphere	ELTNLGFKTLVATTKVQKDWVRSPQPGKMRAVQRTGKKFFIYPDASRSQIYVGGPAEYEAYRKLHPEQQSSQDIANKESAYRGKQAAAMSAATAHDLSDPFLGASWADLGW*
Ga0163161_103241162	3300017792	Switchgrass Rhizosphere	MQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0187765_102111552	3300018060	Tropical Peatland	IDEKQPLDAGFKTLVATTKVQEEWVRKLPPGKIRPMQRTGKKYFIYPDAPRNQIFVGGPEEYETYVQRHPEHRIANAQEAERAASAYRMKQADAMEKASARDLSNPFLGATWADLGWY
Ga0184625_103302721	3300018081	Groundwater Sediment	KIRPMQRTGKKFFIYPDASRNQVYVGGPKEYEAYVQLHPENRVADAQVAEKAASAYRMKQADAMQKASARDLSNPLLGVSWADLGW
Ga0184629_103785641	3300018084	Groundwater Sediment	DWVRSLPPGQIRPMQRTGKKFFVYPDAPRNQIYVGGPKEYEAYQQLHPEGQRSAQDVETKASAYRAKQDAAMRSATARDLSDPFLGASWADLGW
Ga0066667_117392011	3300018433	Grasslands Soil	GFKVLVATTKVQEEWVRKLPPGKIRPMQRTGKKYFIYPDSSRNRVFVGGPMEYETYVQLHPENRVADAGKAQIAASEYRTKQADAMQKATARDLSNPFLGASWADLGW
Ga0190274_100496542	3300018476	Soil	LRQLPSDATNWCRCGVAGTTAKKFFVYPDASKGQVYVGGPAEYDAYVKAHPEEKQRVQSAQDAAAKTSAERIKQGTAMQAATTRDLSNPFLGASWADFGY
Ga0207680_113159552	3300025903	Switchgrass Rhizosphere	GLPPGKIRPMQRTGKKFFIYPDATRNQVYVGGPKEYEAYVALHPENGVADAQKAAREASAYRAKQSEAMQKATARDLSDPFLGASWADLGW
Ga0207699_110213601	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VRGLPAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207645_105552771	3300025907	Miscanthus Rhizosphere	PGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW
Ga0207643_1000041525	3300025908	Miscanthus Rhizosphere	AGKIRAMQRTGKKYFIYPDAPSKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0207707_104746571	3300025912	Corn Rhizosphere	IRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207694_117594132	3300025924	Corn Rhizosphere	DAGFKVLTATTKVQEDWVRGLPAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207701_103743882	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	DWVQRLPPGKIRAMQRTGKKYFIYPDSARNQIYVGGPMEYESYARLHPEHRIADLQQAAKEQSAYRGKQADAMEKASARDLSNPFLGATWADLGW
Ga0207644_108113811	3300025931	Switchgrass Rhizosphere	LTAGKIRAMQRTGKKYFIYPDAPRNQIYVGGPSEYEGYARLHPEHRVADLQQAAKEQANYRGKQADAMEKASARDLSNPFLGATWADLGW
Ga0207651_115005841	3300025960	Switchgrass Rhizosphere	NGKKFFVYPDASRSQIYVGGPAEYDAYVKQHPEEQKRVQSAQDAAAKTSEYRVKQGAAMQAATTRDLSNPFLGASWADLGW
Ga0210127_10227502	3300025964	Natural And Restored Wetlands	KVLVAATKPQEEWIRGLPPGEIRPMQRTGKKFYIFPDAARNQIYVGGPKEYEAYMELHPDSGSKSQEAARKARAYRLKQDDTMTKATAHDLSNPFLGVTWADLGWVVPPYPGTPLGAPRPGGLPPY
Ga0207674_114623081	3300026116	Corn Rhizosphere	QEDWVRGLPAGKIRPMQRTGKKYFIYPDAPGKQIYVGGPKEYDAYVQRHPEHRVTDSKKAAKDASTYRAKQTDEMKQASARDLSDPFLGATWADLGW
Ga0207683_115238841	3300026121	Miscanthus Rhizosphere	SDAGFKVLTATTKVQEDWVRGLPAGKIRPMQRTGKKYFIYPDAPAKQIYVGGPREYSTYVEHHPEHRVADSKKAAKDASAYRARQTDEMKQASARDASDPFLGATWADLGW
Ga0207698_117825462	3300026142	Corn Rhizosphere	KKYFIYPDASRNQVYVGGPAQYDAYKELHPQGQSAQDAAANASAYRGKQDAAMRKATARDLTDPFLGASWADLGW
Ga0209293_104716231	3300027877	Wetland	FIYPDASRNQIYVGGPKEYEAYVQLHPESKPGTQDAANKARVYRGKQDAAMREATGRDLSDPFLGASWADLGW
Ga0208980_108106361	3300027887	Wetland	PPGQIRPMQRTGKKYFIYPDAPKKQVYVGGPNEYEAYLQRHPERRVDAAEAAKKNSAYRGKQDDAMRKATARDLSDPFLGVTWADLGW
Ga0209254_103063402	3300027897	Freshwater Lake Sediment	MQRTGKKYFIYPDPSRNQVYVGGPKEYETYVQLHPENRVADAGEAEMAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW
Ga0268264_100129451	3300028381	Switchgrass Rhizosphere	VDSGFKVLVATNDVQRSWVKGLPAGKFRAMQRTGRKFFIYPDAPGSQVYVGGPAEYDAYLKLHPENAVADAAAVTREASAYRKQQSEAMQKATARDNSDPWLGLSWSDLGW
Ga0268264_105427292	3300028381	Switchgrass Rhizosphere	VLVATNQVQESWVKGLPPGEIRPMQRTGKKFFIYPDASKHQIYVGGPKEYEAYRQLHPENGQAGAQEAANRAYRLKQDSAMKSSTARDLSDPYLGVTWADLGW
Ga0307469_121127221	3300031720	Hardwood Forest Soil	EWVRKLPPGKIRPMQRTGKKFFIYPDPSRNQVYVGGPKEYETYVQLHPENRVADSREAEKAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW
Ga0315290_113933232	3300031834	Sediment	RSLPAGQIRAMQRTGKKYFIYPDASRNQIYVGGPAEYEAYRKLHPEGQQSAEEAAAKASAYRGKQDAAMRSATARDLSDPFLGVTWSDLGW
Ga0310907_105768902	3300031847	Soil	YFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0315297_108958831	3300031873	Sediment	EEWVRKLPPGKIRPMQRTGKKYFIYPDPSRNQVYVGGPKEYEAYVQLHPENRVADAREAEIAASAYRMKQADAMQKATARDLSDPFLGVSWADLGW
Ga0311367_120650162	3300031918	Fen	VKSLEPGRIRPMQRNGKKYFIYPDAPRNQIYVGGPNEYAAYQDLHPESQVDPKEAANKANAYRYKQDDAMRKASARDLSNPFLGASWSDLGW
Ga0308175_1025221332	3300031938	Soil	NGKKYFIFPDASKTQIYVGGPAEYEAYRKLHPQAQQSMQDAANKENAYRGKQAAAMQAATAHDLSDPFLGLSWADLGW
Ga0315278_113003691	3300031997	Sediment	GKKYFIYPDASRNQIYVGGPAEYEAYRKLHPEGQQSAEEAAAKASAYRGKQDAAMRSATARDLSDPFLGVTWSDLGW
Ga0310903_107273282	3300032000	Soil	IYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0310897_104611421	3300032003	Soil	LLDAGFKVLVATTEVQQKWVRGLPPGAIRPMQRTGKKFFIYPDASRNQVFVGGPKEYEAYVQLHPENRVADAQKEARDASAYRAKQSEAMQKATARDLSDPWLGVTWADLIY
Ga0315284_124625702	3300032053	Sediment	LPPGKIRPMQRTGKKYFIYPDPSRNQVYVGGPKEYETYVQLHPENRVADAREAAIAASAYRMKQDDAMQKATARDLSDPFLGVGWADLGW
Ga0315277_109778681	3300032118	Sediment	KKFFIYPDASGNQIYVGGPAEYEAYQQLHPEGQQSAQDAAAKASAYRGKQDAAMRKATARDLSDPFLGASWADLGW
Ga0315281_107773251	3300032163	Sediment	MQRTGKKFFIYPDASGNQIYVGGPAEYEAYQQLHPEGQQSAQDAAAKASAYRGKQDAAMRKATARDLSDPFLGASWADLGW
Ga0315281_118018242	3300032163	Sediment	VQQDWVRSLPPGQIRAMQRTGKKYFIYPDASRNQIYVGGPAEYEAYRKLHPEAQQSAEEAAAKASAYRGKQDAAMRSATARDLSDPFLGVTWSDLGW
Ga0315268_123002361	3300032173	Sediment	GQIRAMQRTGKKFFIYPDASRNQIYVGGPAEYEAYRKLHPEGQQSAEEAAAKASAYRGKQDAAMRNATARDLSDPFLGVTWSDLGW
Ga0307472_1021752042	3300032205	Hardwood Forest Soil	IYVGGPAEYDAYQQLHPEEQQSAQSAKDAAAKQSAYRGKQAAAMQAATARDLSDPFLGASWADLGW
Ga0315270_107651551	3300032275	Sediment	ATTKVQQEWVKTLPPGQIRPMQRNGKKFFIYPDSPRNQIYVGGPEEYAAYQKLHPENQQSAQEAANKASAYRLKQDDAMKKATARDLSNPFLGASWADLGW
Ga0335077_115942591	3300033158	Soil	AMQRTGKDYFIYPDPSRNQIYVGGPKEYATYVQLHPEHRVADAGEAQKAESAYRMKQTDAMQKATARDLSNPFLGASWADLGW
Ga0310810_107513821	3300033412	Soil	KIRAMQRTGKKYFIYPDAPGKQIYVGGPKEYDTYVQRHPEHRVADSTQAAKDSSAYRAKRTDEMKEASARDLSDPFLGVTWGDLGW
Ga0316619_110613381	3300033414	Soil	IGQPPAHGGDGGPAEYEAYQQLHPEGRPSAQDAATKARAYRGKQDAAMRKSTARDLSDPFLGASWADLGR
Ga0316622_1014322021	3300033416	Soil	AQRNQIYVGGPAEYQAYRQRHPEEQRSAQDAAAKASAYRGKQDVAMRDATARDLSDPFLGVSWSDLGW
Ga0316625_1025409042	3300033418	Soil	WVKTLPPGKIRPMQRNGKHFFIYPDAPRNQIYVGGPKEYEAYRQLHPETPTGTQEAADKATAYRLKQDKAMREATTRDLSDPFLGASWYDLGW
Ga0316601_1020227581	3300033419	Soil	KIRPMQRTGKKFFIYPDAPRNQIYVGGPKEYDAYVKLHPEDRTTTQEAAKKASDYRVKQGDVMRNATEHDLSNPFLGATWADLGW
Ga0316627_1004415032	3300033482	Soil	LPPGKIRPMQRTGKKYFIYPDSTRNQVYVGGPKEYEKYVQLHPENRVADAQEAQKAASAYRMKQAEEMQKATARDLSDPFLGVSWADLGW
Ga0316627_1023653732	3300033482	Soil	IYVGGPAEYDAYRQLHPEGEQSAQDAAAKARAYREKQDAAMRAATARDLSDPFLGVSWADLGW
Ga0316629_115973842	3300033483	Soil	IRPMQRTGKKFFIYPDARNKQIYVGGPNEYEAYLQRHPESRVDAAEAAKKNSAYRGKQDDAMRQATSRDLSDPFLGVTWADLGW
Ga0316630_101733192	3300033487	Soil	ESQLLELGFKVLAATTKAQQDWVRSLPPGQIRPMQRTGKKFYIYPDAPRNQIYVGGPKEYEAYVQLHPESKPGTQDAANKARVYRGKQDAAMREATGRDLSDPFLGASWADLGW
Ga0316628_1007841913	3300033513	Soil	QEEWVRGLPPGKIRPMQRTGKKYCIYPDASKNRIYVGGPKEYDAKLALHPEHRAASAGQVAKEASAYRAKQEDTMRKATARDLSDPFLGASWADLGW
Ga0316616_1005113184	3300033521	Soil	IYPDAPKKQIYVGGPNEYEAYLQRHPESRVDAAEAAKKNSAYRGKQDDAMRKATARDLSDPFLGVTWADLGW
Ga0316616_1039413271	3300033521	Soil	TTKVQEDWVRSLPPGQIRAMQRTGKKFFIYPDASRNQIYVGGPAEYDAYRQLRPEGEQSEQDAAAKARAYRGKQDAAMRAATARDLSDPFLGVSWADLGW
Ga0370493_0229212_2_214	3300034129	Untreated Peat Soil	PDAANKQVYVGGPEQYEALLERHPDARQSPQDAAAKASAYRGQQNQSMQKATARDLTDPFLGASWADLGW
Ga0364931_0130543_1_261	3300034176	Sediment	GKIKPMQRTGKKFFIYPDASRNQIYVGGPKEYEAYHQLHPESQLATREAAKKGSAYRLKQDEVMQKATARDLSDPFLGASWFDLGW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078884

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences