Metagenome / Metatranscriptome Family F078931

Basic Information
Family ID	F078931
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	70 residues
Representative Sequence	MPDITEDQVVATARELGKDEFTRGDLAEKLGVDKPELSKPFRQARRAGRLDKVRDDEEGTGHFRLTDK
Number of Associated Samples	81
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Most Common Taxonomy
Group	Unclassified (99.138 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (18.965 % of family members)
Environment Ontology (ENVO)	Unclassified (34.483 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.276 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 10.42% Coil/Unstructured: 56.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF12680	SnoaL_2	9.57
PF12802	MarR_2	6.09
PF03706	LPG_synthase_TM	5.22
PF10057	MpsC	4.35
PF13456	RVT_3	4.35
PF01367	5_3_exonuc	3.48
PF02739	5_3_exonuc_N	2.61
PF00383	dCMP_cyt_deam_1	1.74
PF01740	STAS	1.74
PF00313	CSD	1.74
PF00196	GerE	0.87
PF14492	EFG_III	0.87
PF01896	DNA_primase_S	0.87
PF13412	HTH_24	0.87
PF00902	TatC	0.87
PF11464	Rbsn	0.87
PF00005	ABC_tran	0.87
PF03372	Exo_endo_phos	0.87
PF03631	Virul_fac_BrkB	0.87
PF01726	LexA_DNA_bind	0.87
PF00487	FA_desaturase	0.87
PF07690	MFS_1	0.87
PF02416	TatA_B_E	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	6.09
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	5.22
COG0805	Twin-arginine protein secretion pathway component TatC	Intracellular trafficking, secretion, and vesicular transport [U]	0.87
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.87
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.87
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.87
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.87

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.14 %
All Organisms	root	All Organisms	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.14 %
cellular organisms	root	All Organisms → cellular organisms	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.86 %

Scaffold	Taxonomy	Length	IMG/M Link
3300009147\|Ga0114129_10266280	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.76%
Host-Associated	Host-Associated	41.38%
Engineered	Engineered	0.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.76%
Plants	Host-Associated → Plants	41.38%
Solid Waste	Engineered → Solid Waste	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	29.31%
Roots	Host-Associated → Plants → Roots	6.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.17%
Phylloplane	Host-Associated → Plants → Phylloplane	0.86%
Grass	Engineered → Solid Waste → Grass	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.14%
Loam	Environmental → Terrestrial → Soil → Loam	8.62%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	6.03%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.86%
Composting	Engineered → Solid Waste → Grass → Composting	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.62%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.03%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	6.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.86%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.24%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	13.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.03%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	6.03%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.86%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.86%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309009	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031081	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_159 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPKNP_08652300	2070309009	Soil	MPKQITSDQVVAAAEGLGQAEFTRGDLAKKLGVDKPKKFRQGFRQARKAGRLDKVRDDEEGTGHFRLTDR
L01_02407780	2170459006	Grass Soil	MAKDITEDQVVATAQELGQDEFTRGDLADKLGVEKADLSKPFRQARRAGRLDKTRDDDEGTGHFKLTEK
4ZMR_03918760	2170459017	Switchgrass, Maize And Mischanthus Litter	MPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK
JGI10216J12902_1233772212	3300000956	Soil	MPKEITADQVVAAAEGLGKAEFTRSDLAQKLGVEKPKEFSQGFRQARRAGRLDKVRDDEEGTGHFRLTSGS*
C688J18823_107745532	3300001686	Soil	MAQDITEDQVVATARDLDQEEFTRSDLAEKLGVEKAELSKPFRQARRAGRLDKVRDDDEGTGHFKLTGK*
C688J35102_1199514682	3300002568	Soil	MAKTVTPDQVVEAAKELGQDEFTREDLAQKLGVEKPELKPGIRQARQAGNLNKVGEDEKGTGRFRLTDK*
C688J35102_1204689182	3300002568	Soil	VAKSITEDQLVATAQELGKDEFTRADLAEKLGVEKPDLSKPFRQARKAGRFDKTRDDEEGTGHFRLTSK*
C688J35102_1209503681	3300002568	Soil	MPKQITSDQVVAAAEGLGKAEFTRGDLAQKLGVEKPKKFSQGFRQARRAGRLDKVRDDEEGTGHFRLTDR*
Ga0063454_1001916273	3300004081	Soil	MPQDITEDQVVATARDLDQEEFTRSDLAEKLGVEKAELSKPFRQARRAGRLDKVRDDDEGTGHFRLTGK*
Ga0063454_1002473473	3300004081	Soil	MPKTVTPDQVVEAAKELGKDEFTRQDLAQKLGVEKTDLKHPFHKARQAGELDKVRDNESGDGLFRLTSK*
Ga0063454_1002535272	3300004081	Soil	MPDITEDQVVATARELGKDEFTRGDLAEKLGVDKPELSKPFRQARRAGRLDKVRDDEEGTGHFRLTDK*
Ga0062593_1000190804	3300004114	Soil	MPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0062593_1000247761	3300004114	Soil	MADKATADQIVTTARELGQAEFTREDIAKKLGVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVTGN*
Ga0062593_1013789832	3300004114	Soil	MPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0062593_1026732511	3300004114	Soil	NPKGIAMPKTITPDQVVAAAEGLEKDEFTREDLAQKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0062589_1001357381	3300004156	Soil	MPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHF
Ga0062589_1004143483	3300004156	Soil	MPKTITPDQVVAAAEGLEKDEFTREDLAQKLGTDKPDLMKGFRQARKAGRLEKVCDDEEGTGHFRVKAPAASVKQG*
Ga0062590_1007413853	3300004157	Soil	MPKTITPDQVVAAAEGLEKDEFTREDLAQKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0062592_1018513342	3300004480	Soil	MADKATADQIVTTARELGQAEFTREDIAKKLGVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVT
Ga0062591_1004217633	3300004643	Soil	RECSCDTETNPKGQAMPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0062594_1003440642	3300005093	Soil	MPKTVTPDQVVDAAKELDQDEFTRQDLAQKLGVDKTELKQSFHKARKAGELDKVRDNEQGKGLFRLTGK*
Ga0070687_1012436843	3300005343	Switchgrass Rhizosphere	QIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0070671_1016250831	3300005355	Switchgrass Rhizosphere	PKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0070667_1013841511	3300005367	Switchgrass Rhizosphere	MPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0070741_102083802	3300005529	Surface Soil	MPKEITSDQVVAAAEGLGKAEFTRGDLAQKLGVEEPKQFSQGFRQARRAGRLDKVRDDAEGTGHFRLTTSS*
Ga0070695_1008997801	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0058697_104833622	3300005562	Agave	MPERIKADQVAATARDLGQAEFTRDDLAKKLGVEKPEFRNAFRQARKSGRLEKVREDAEGTGYFRATGK*
Ga0066903_1001120614	3300005764	Tropical Forest Soil	MPGITEDQVVATAKDLGQDEFTRGDLAKKLGVEKTELSKPFRQARRAGRLDKVRDDDEGTGHFRLTGK*
Ga0081455_101115932	3300005937	Tabebuia Heterophylla Rhizosphere	MSQSITADQVVAAAKDIGQAEFTRDDLAEKLGVEKRELKQGFREARRSGRLEKVRDDDQGKRHFRLTDQ*
Ga0075365_1000288414	3300006038	Populus Endosphere	MPNITEDQVVETAQQLGKDEFTRADLATKLGVEKTELSKPFRQARRAGRLDKTRDDDEGTGHFRLTNK*
Ga0075365_100028844	3300006038	Populus Endosphere	MPKTITPDQVVEAAQGLDKAEFTRDDLAQKLGVQKPDFKRGFRQARKAGHLDKVRDDDEGTGHFRLTKE*
Ga0075365_1000564710	3300006038	Populus Endosphere	MPKTVTPDQVVEAAKELGQDEFTRQDLAQRLGVEKTELKQSFHKARKAGELDKVRDDETGAGLFRLTGK*
Ga0075365_100694313	3300006038	Populus Endosphere	MTHAMPEAITPDQVVEAAKELGQDEFTRDDLAHKLGVEQPDIRLGFRRARRAGHLDKVREDDQGTGHFRLTGE*
Ga0075365_109888052	3300006038	Populus Endosphere	MPKTVTPDQVVDAAKELDQDEFTRQDLAQKLGVDKTELKQSFHKARKAGELDKVRDNEQGAGLFRLTGK*
Ga0075364_104578812	3300006051	Populus Endosphere	MVAVTISKGWSMPNITEDQVVETAQQLGKDEFTRADLATKLGVEKTELSKPFRQARRAGRLDKTRDDDEGTGHFRLTNK*
Ga0075367_107006211	3300006178	Populus Endosphere	PKGIAMPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0075428_1002154643	3300006844	Populus Rhizosphere	MADRATADQIVTTARELGQAEFTREDIAKKLGVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVTGN*
Ga0075421_1002904221	3300006845	Populus Rhizosphere	MPKQITSDQVVAAAEELDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVR
Ga0075421_1010243783	3300006845	Populus Rhizosphere	MSQTIGPDQVIATAHDLGQPEFTRGDLAEKLGVEQPELRKGFRQARRAGRIDKLRDDDEGTGHFRLTDQ*
Ga0075421_1016079523	3300006845	Populus Rhizosphere	MPKQITSDQVVAAAEDLDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVR
Ga0075430_1004327772	3300006846	Populus Rhizosphere	VPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0075430_1008402012	3300006846	Populus Rhizosphere	MPKQITSDQVVAAAEDLDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0075420_1015309221	3300006853	Populus Rhizosphere	PQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0075425_1007780143	3300006854	Populus Rhizosphere	MPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASVKQG*
Ga0075425_1015510601	3300006854	Populus Rhizosphere	EGPSMPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0075434_1002939722	3300006871	Populus Rhizosphere	MPKQITADQVVAAAEDLDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0075434_1024696121	3300006871	Populus Rhizosphere	MPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTE
Ga0075424_1001342835	3300006904	Populus Rhizosphere	MPKQITSDQVVAAAEELDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0075436_1005943991	3300006914	Populus Rhizosphere	MADKATADQIVTTARELGQAEFTREDIAKKLDVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVTGN*
Ga0075435_1003162623	3300007076	Populus Rhizosphere	TITPDQVVAAAEGLEKDEFTREDLAQKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0114129_102662802	3300009147	Populus Rhizosphere	MSETIGPDQVIATAHDLGQPEFTRGDLAEKLGVEQPELRKGFRQARRAGRIDKLRDDDEGTGHFRLTDQ*
Ga0114129_103342401	3300009147	Populus Rhizosphere	MPKQITSDQVVAAAEGLGKAEFTRGDLAEKLDVEKPKEFSQGFRQARRAGRLDKVRDDAEGTGHFRLTDQ*
Ga0114129_106215983	3300009147	Populus Rhizosphere	MRGTRSLARPCDHDPKGRSIPQDITEDQVVATARDLDQDEFTRGDLAEKLGVEKPELSKPFRQARRAGRLNKVRDDDEGTGHFRLTDR*
Ga0114129_122786951	3300009147	Populus Rhizosphere	MPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTDR*
Ga0114129_135147821	3300009147	Populus Rhizosphere	MPQRIKADQVAATAKDLGQAEFTRDDLAKKLGVEKSELRNAFRQARKSGRLEKVREDAEGTGHFRVTDK*
Ga0111538_120250632	3300009156	Populus Rhizosphere	MPKQITSDQVVAAAEDLDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRD
Ga0105242_108401891	3300009176	Miscanthus Rhizosphere	AQTLLRPEPNPKGIAMPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV*
Ga0105248_105004634	3300009177	Switchgrass Rhizosphere	MPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRKARKAGSLEKVRDDEEGTGHFRVKAPAASV*
Ga0126307_102340763	3300009789	Serpentine Soil	MPETVTPEQVVAAAKELDKPEFTRDDLAQKLGVEQPDLRLGFRRARRAGHLDKVRDDEKGTGVFRLTDK*
Ga0126313_101270153	3300009840	Serpentine Soil	MPKTVTPDQVVEAAKELDKDEFTRQDLAQKLGVEKTELKHPFHKARKAGELDKVRDDESGAGLFRLTGK*
Ga0126313_105571912	3300009840	Serpentine Soil	MPETVTPEQVVAAAKELDKPEFTRDDLAQKLGVEQPDLRLGFRRARRAGHLDKVREDEEGTGVFRLTDK*
Ga0126305_1000063013	3300010036	Serpentine Soil	MPETVTPEQVVAAAKELDKPEFTRDDLAQKLGVEQPDLRLGFRRARRAGHLDKVRDDEEGTGVFRLTDK*
Ga0126305_112978092	3300010036	Serpentine Soil	MPKTVTPDQVVEAAKELDKAEFTRQDLAQKLGVEKTELKHPFHKARQAGELDKVRDDESGAGLFRLTGK*
Ga0126315_101929673	3300010038	Serpentine Soil	MPQDITDDQIVATARDLGQDEFTRADIAEKLGVDKTELSKPFRQARRAGRLDKVRDDDEGTGHFRLTDK*
Ga0126315_107885871	3300010038	Serpentine Soil	MPETITPEQVVEAAKELGQDEFTRDDLASKLGVEQSDLRLGFRRARRAGHLDKVREDEKGTGVFRLTGK*
Ga0126308_101297302	3300010040	Serpentine Soil	MPEDITEDQIVTTARDLGQDEFTREDLAKKLGVDKTELSKPFRQARRGGRLDKVRDDEEGTGHFRLTGK*
Ga0126308_110268081	3300010040	Serpentine Soil	MPEPITPEQVVEAAKELGQDEFTRDDLASKLGVEQSDLRLGFRRARRAGHLDKVRE
Ga0126312_100055335	3300010041	Serpentine Soil	MPQDITDDQIVATARDLGQDEFTRADIAEKLGVDKSELSKPFRQARRAGRLDKVRDDDEGTGHFRLTDK*
Ga0126312_1000694910	3300010041	Serpentine Soil	MPKTVTPDQVVEAAKELGQDEFTRQDLAQKLGVEKTEIKQSFHKARKAGEFDKVRDNEQGAGLFRLTGK*
Ga0126312_105825791	3300010041	Serpentine Soil	EQVVAAAKELDKPEFTRDDLAQKLGVEQPDLRLGFRRARRAGHLDKVREDEEGTGVFRLTDK*
Ga0126314_101035833	3300010042	Serpentine Soil	MPQDITDDQIVATARDLGQEEFTRADIAEKLGVDKTELSKPFRQARRAGRLDKVRDDDEGTGHFRLTDK*
Ga0126310_106937442	3300010044	Serpentine Soil	MPKTVTPDQVVEAAKELGKDEFTRQDLAQKLGVEKTELKHPFHKARKAGELDKVRDDESGAGLFRLTSK*
Ga0126310_110160342	3300010044	Serpentine Soil	MAKDITEDQIVATAKELGKDEFTRGDLADKLGVEKTDLSKPFRQARRAGSLDKTRDDDEGTGHFRLTDK*
Ga0126310_117046152	3300010044	Serpentine Soil	MPQDITEDKVVATARELDQEEFTRGDLAEKLGVEKAELSKPFRQARRAGHLEKVRDDDEGTGHFRLTSK*
Ga0134062_106991121	3300010337	Grasslands Soil	MPDITEEQIVTTAQELGQDEFTREDLAGKLGVKKNQLSKPFRHARRAGRLEKVRDDENGTGVFRLKK*
Ga0134123_126969141	3300010403	Terrestrial Soil	TARDLGQEEFTRADLAEKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0137376_109926191	3300012208	Vadose Zone Soil	TASHRTQAERKRNMPKTITPDDVVAAAEGLDKAEFTREDLAQKLGTEKPAISKGFRQARKAGRLEKVRDDEEGTGHFRLKQA*
Ga0150984_1144568121	3300012469	Avena Fatua Rhizosphere	MAKTVTPDQVVAAAKELGQDEFTREDLAQKLGVEKTELKQGFRKARQAGELDKVREDDAGTGLFRLTNK*
Ga0157309_103049032	3300012895	Soil	MADITADQVVEAASGLGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0157285_103182071	3300012897	Soil	QVVAAAEGLEKDEFTREDLAQKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASVKQG*
Ga0157285_103749102	3300012897	Soil	MPKQITSDQVVAAAEELGKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0157285_103790861	3300012897	Soil	ITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0157288_103009282	3300012901	Soil	ADKATADQIVTTARELGQAEFTREDIAKKLGVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVTGN*
Ga0157301_100859513	3300012911	Soil	AAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0157306_101264291	3300012912	Soil	YRNQSERTGMPKQITADQVVAAAEDLDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0164300_101480642	3300012951	Soil	MPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPVRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0157375_104901811	3300013308	Miscanthus Rhizosphere	KTVRRTTIREGPSMPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0157380_109595662	3300014326	Switchgrass Rhizosphere	MPTDITEDQIVATAKELGQDEFTRDDLAKTLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK*
Ga0132258_126723242	3300015371	Arabidopsis Rhizosphere	MPKQITSDQVVAAAEGLGKAEFTRADLAQELGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0132258_130497793	3300015371	Arabidopsis Rhizosphere	MADKATADQIVTTARELGQAEFTREDIAKKLGVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVTGS*
Ga0132256_1030547611	3300015372	Arabidopsis Rhizosphere	PDTETNPKGQAMPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0132257_1008507182	3300015373	Arabidopsis Rhizosphere	MPQQITSDQVVAAAEDLGKAEFTRADLAQELGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR*
Ga0132257_1011771472	3300015373	Arabidopsis Rhizosphere	MPTDITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQACRAGRLDKTRDDEEGTGHFRLTEK*
Ga0132255_1034754921	3300015374	Arabidopsis Rhizosphere	GARECSPDTETNPKGQAMPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS*
Ga0187788_105014751	3300018032	Tropical Peatland	MSKTIGPDQVIATARDLEQPEFTRGDLAEKLGVEQPELRKGFRQARRAGRIDKVRDDDEGTGHFRLTAQ
Ga0190271_123960803	3300018481	Soil	MSKTITPDQVVEAAQELGKDEFTREDLAEKLGVDRPDLKDAFKEARQANRLEKVRDDDEGTGIFRLTGS
Ga0066669_100824954	3300018482	Grasslands Soil	MAKTVTPDQVVEAAKELGQDEFTREDLAQKLGVEKPELKPGIRQARQAGNLNKVGEDEKGTGRFRLTDK
Ga0066669_103852242	3300018482	Grasslands Soil	MPQTITSDEVVGVAKGLGQAEFTRGDLAQKLGVDKSELKKGFHQARKAGSLDKVRDDKEGIGHFRLTDR
Ga0173481_102358292	3300019356	Soil	MPQQITSDQVVAAAEDLGKAEFTRADLAQKLGVDNPKKFSQGFRQARKAGRLDKVRDDEEGTGHFRLTTSS
Ga0173481_104407701	3300019356	Soil	RTGMPKQITSDQVVAAAEDLGKAEFTRGDIAQRLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR
Ga0173482_101705321	3300019361	Soil	MPKQITADQVVAAAEDLDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR
Ga0206354_113501481	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	ITEDQIVATAKELGQDEFTRDDLAKKLGVDKTDLSKPFRQARRAGRLDKTRDDEEGTGHFRLTEK
Ga0207671_114283841	3300025914	Corn Rhizosphere	PQGAQTLLRTEPNPKGIAMPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV
Ga0207669_104870731	3300025937	Miscanthus Rhizosphere	APPGRQTLLRTEPNPKGIAMPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKAPAASV
Ga0207691_102372751	3300025940	Miscanthus Rhizosphere	MPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDE
Ga0207711_117658953	3300025941	Switchgrass Rhizosphere	MPKTITPDQVVAAAEGLEKDEFTREDLAKKLGTDKPDLMKGFRQARKAGRLEKVRDDEEG
Ga0209481_105899342	3300027880	Populus Rhizosphere	MPKQITSDQVVAAAEELDKAEFTRGDIAQKLGVDKPKKFRPGFRQARQAGRLDKVRDDEEGTGHFRLTDR
Ga0207428_106923122	3300027907	Populus Rhizosphere	MADKATADQIVTTARELGQAEFTREDIAKKLGVQKRELVKGFREARKSGRLEKVRDDEEGTGIFRVTGN
Ga0307278_100282152	3300028878	Soil	MPEDITEDQIVTTARDLGQDEFTREDLAKKLGVDKTELSKPFRQARRGGRLDKVRDDEEGTGHFRLTGK
Ga0308183_10233992	3300030988	Soil	MPETITPDQVVEAAKELGKDEFTRDDLCQKLGVEQPDLRLGFRRARRAGHLDKVRDDEEGKGHFRLTGE
Ga0308178_11432932	3300030990	Soil	MAKTITPDQVVAAAKELGQDEFTREDLAQKLGVEKPELKPGIRQARQAGNLDKVGEDEKGTGRFRLTGK
Ga0308185_10367632	3300031081	Soil	MPKTITPDQVVEAAEGLEKDEFTREDLAKKLGTKKPDLMKGFRQARKAGRVEKVRDDEEGTGHFRLKAPAASV
Ga0308186_10314732	3300031422	Soil	MAKTITPDQVVAAAKELGQDEFTREDLAQKLGVEKPDLKPGIRQARQAGNLDKVGEDEKGTGRFRLTGK
Ga0370548_101924_83_313	3300034644	Soil	MPKTITPDQVVEAAEGLEKDEFTREDLAKKLGTKKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKTPAKAPVAV
Ga0370541_026456_342_551	3300034680	Soil	MPKTVTPDQVVEAAKELDKDEFTRQDLAQKLGVEKTDLKHPFHKARKAGELDKVRDDESGAGLFRLTSK
Ga0370546_017625_192_422	3300034681	Soil	MPKTITPDQVVEAAEGLEKDEFTREDLAKKLGTQKPDLMKGFRQARKAGRLEKVRDDEEGTGHFRVKTPAKAPVAV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078931

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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