Metagenome / Metatranscriptome Family F078939

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F078939
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	51 residues
Representative Sequence	AMGRKALALATGDPAAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Number of Associated Samples	99
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	94.83 %
% of genes from short scaffolds (< 2000 bps)	81.03 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (72.414 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (38.793 % of family members)
Environment Ontology (ENVO)	Unclassified (43.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (48.276 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01503	PRA-PH	18.97
PF01053	Cys_Met_Meta_PP	8.62
PF00977	His_biosynth	1.72
PF03922	OmpW	1.72
PF13414	TPR_11	0.86
PF07690	MFS_1	0.86
PF02622	DUF179	0.86
PF00475	IGPD	0.86
PF13533	Biotin_lipoyl_2	0.86
PF01936	NYN	0.86
PF08874	DUF1835	0.86
PF00180	Iso_dh	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	8.62
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	8.62
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	8.62
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	8.62
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	8.62
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	8.62
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	8.62
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	8.62
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	8.62
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	8.62
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	8.62
COG3047	Outer membrane protein OmpW	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0131	Imidazoleglycerol phosphate dehydratase HisB	Amino acid transport and metabolism [E]	0.86
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.86
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.41 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.41 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.41 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	68.10 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	61.21 %
Unclassified	root	N/A	27.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	18.97 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3.45 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	1.72 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	18.97 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.72 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1.72 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	18.97 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1.72 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.72 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	18.97 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.72 %
Pseudomonas flexibilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas flexibilis	0.86 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.59 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	18.97 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.72 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.72 %
Pseudomonas cichorii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii	0.86 %
Pseudomonas flexibilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas flexibilis	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_104903698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	860	Open in IMG/M
3300004091\|Ga0062387_101083015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	620	Open in IMG/M
3300004092\|Ga0062389_104075319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	549	Open in IMG/M
3300004635\|Ga0062388_102660015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	526	Open in IMG/M
3300005332\|Ga0066388_107131025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	562	Open in IMG/M
3300005434\|Ga0070709_10676345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	801	Open in IMG/M
3300005439\|Ga0070711_102018255	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300005535\|Ga0070684_101391020	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300005543\|Ga0070672_101803119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	550	Open in IMG/M
3300005544\|Ga0070686_101505608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas cichorii	567	Open in IMG/M
3300005553\|Ga0066695_10090918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1863	Open in IMG/M
3300005602\|Ga0070762_11234278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	518	Open in IMG/M
3300005712\|Ga0070764_10090975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1619	Open in IMG/M
3300005921\|Ga0070766_10045970	All Organisms → cellular organisms → Bacteria → Proteobacteria	2437	Open in IMG/M
3300006176\|Ga0070765_102301565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas flexibilis	502	Open in IMG/M
3300009137\|Ga0066709_100860537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1318	Open in IMG/M
3300009137\|Ga0066709_104668378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	501	Open in IMG/M
3300009551\|Ga0105238_11572496	Not Available	687	Open in IMG/M
3300009553\|Ga0105249_11393685	Not Available	773	Open in IMG/M
3300010048\|Ga0126373_10679045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1087	Open in IMG/M
3300010048\|Ga0126373_12736384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	550	Open in IMG/M
3300010049\|Ga0123356_12013927	Not Available	720	Open in IMG/M
3300010371\|Ga0134125_10531606	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300010375\|Ga0105239_12223457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	638	Open in IMG/M
3300010376\|Ga0126381_101537977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	961	Open in IMG/M
3300010396\|Ga0134126_10070807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	4329	Open in IMG/M
3300012189\|Ga0137388_11151112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	713	Open in IMG/M
3300012971\|Ga0126369_10413311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1390	Open in IMG/M
3300013105\|Ga0157369_10502610	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300014501\|Ga0182024_11293604	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300015241\|Ga0137418_10600193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	863	Open in IMG/M
3300015371\|Ga0132258_10758315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2445	Open in IMG/M
3300016341\|Ga0182035_11307745	Not Available	649	Open in IMG/M
3300016371\|Ga0182034_11685686	Not Available	557	Open in IMG/M
3300017973\|Ga0187780_11098087	Not Available	581	Open in IMG/M
3300020080\|Ga0206350_10102645	Not Available	525	Open in IMG/M
3300021171\|Ga0210405_11345948	Not Available	522	Open in IMG/M
3300021403\|Ga0210397_10463969	Not Available	955	Open in IMG/M
3300021560\|Ga0126371_12477930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	628	Open in IMG/M
3300025906\|Ga0207699_11249708	Not Available	550	Open in IMG/M
3300025921\|Ga0207652_11667924	Not Available	542	Open in IMG/M
3300025924\|Ga0207694_10507276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1010	Open in IMG/M
3300025928\|Ga0207700_11577446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	581	Open in IMG/M
3300025929\|Ga0207664_11489372	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300025939\|Ga0207665_11314313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	576	Open in IMG/M
3300025940\|Ga0207691_11461642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	560	Open in IMG/M
3300025949\|Ga0207667_10597540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1113	Open in IMG/M
3300025961\|Ga0207712_11394078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	627	Open in IMG/M
3300026095\|Ga0207676_12224010	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300026095\|Ga0207676_12482827	Not Available	515	Open in IMG/M
3300027097\|Ga0208861_109855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	554	Open in IMG/M
3300027648\|Ga0209420_1049961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1258	Open in IMG/M
3300027884\|Ga0209275_10888569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	514	Open in IMG/M
3300030007\|Ga0311338_10815946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	928	Open in IMG/M
3300030906\|Ga0302314_11019788	Not Available	796	Open in IMG/M
3300031231\|Ga0170824_128764040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1850	Open in IMG/M
3300031232\|Ga0302323_100773998	All Organisms → cellular organisms → Bacteria → Proteobacteria	1053	Open in IMG/M
3300031232\|Ga0302323_102846329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	553	Open in IMG/M
3300031247\|Ga0265340_10135863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1126	Open in IMG/M
3300031446\|Ga0170820_10406606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	686	Open in IMG/M
3300031469\|Ga0170819_10490430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	725	Open in IMG/M
3300031474\|Ga0170818_103364952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1814	Open in IMG/M
3300031543\|Ga0318516_10019174	Not Available	3467	Open in IMG/M
3300031544\|Ga0318534_10059852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2144	Open in IMG/M
3300031668\|Ga0318542_10301335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	820	Open in IMG/M
3300031668\|Ga0318542_10301552	Not Available	820	Open in IMG/M
3300031679\|Ga0318561_10033307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2501	Open in IMG/M
3300031679\|Ga0318561_10481186	Not Available	683	Open in IMG/M
3300031682\|Ga0318560_10103114	Not Available	1478	Open in IMG/M
3300031713\|Ga0318496_10011541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4191	Open in IMG/M
3300031713\|Ga0318496_10042056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2348	Open in IMG/M
3300031715\|Ga0307476_10724637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	736	Open in IMG/M
3300031715\|Ga0307476_11437605	Not Available	501	Open in IMG/M
3300031744\|Ga0306918_10103625	Not Available	2030	Open in IMG/M
3300031748\|Ga0318492_10043981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2063	Open in IMG/M
3300031748\|Ga0318492_10707786	Not Available	540	Open in IMG/M
3300031751\|Ga0318494_10663032	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300031764\|Ga0318535_10132534	Not Available	1105	Open in IMG/M
3300031765\|Ga0318554_10645268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	595	Open in IMG/M
3300031768\|Ga0318509_10047192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2182	Open in IMG/M
3300031768\|Ga0318509_10287599	Not Available	919	Open in IMG/M
3300031769\|Ga0318526_10367072	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300031771\|Ga0318546_10805025	Not Available	661	Open in IMG/M
3300031778\|Ga0318498_10071232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1562	Open in IMG/M
3300031781\|Ga0318547_10057251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2119	Open in IMG/M
3300031781\|Ga0318547_10545980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	717	Open in IMG/M
3300031782\|Ga0318552_10272705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	859	Open in IMG/M
3300031793\|Ga0318548_10167842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1073	Open in IMG/M
3300031796\|Ga0318576_10055652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1725	Open in IMG/M
3300031796\|Ga0318576_10622587	Not Available	508	Open in IMG/M
3300031805\|Ga0318497_10198338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1108	Open in IMG/M
3300031831\|Ga0318564_10035855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2128	Open in IMG/M
3300031832\|Ga0318499_10293480	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300031833\|Ga0310917_10119874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1712	Open in IMG/M
3300031860\|Ga0318495_10195557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	910	Open in IMG/M
3300031879\|Ga0306919_10645930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	816	Open in IMG/M
3300031954\|Ga0306926_12243636	Not Available	607	Open in IMG/M
3300031954\|Ga0306926_12500537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	566	Open in IMG/M
3300031959\|Ga0318530_10169472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	891	Open in IMG/M
3300031962\|Ga0307479_10992652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	809	Open in IMG/M
3300032009\|Ga0318563_10049742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2146	Open in IMG/M
3300032009\|Ga0318563_10141771	Not Available	1287	Open in IMG/M
3300032009\|Ga0318563_10472715	Not Available	678	Open in IMG/M
3300032054\|Ga0318570_10004133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4456	Open in IMG/M
3300032065\|Ga0318513_10028131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2411	Open in IMG/M
3300032066\|Ga0318514_10286901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	869	Open in IMG/M
3300032067\|Ga0318524_10140571	Not Available	1216	Open in IMG/M
3300032090\|Ga0318518_10028664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2527	Open in IMG/M
3300032261\|Ga0306920_103144800	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300033290\|Ga0318519_10091961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1616	Open in IMG/M
3300033290\|Ga0318519_10850936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	562	Open in IMG/M
3300033486\|Ga0316624_10000424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14161	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.93%
Host-Associated	Host-Associated	12.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.34%
Plants	Host-Associated → Plants	11.21%
Aquatic	Environmental → Aquatic	2.59%
Arthropoda	Host-Associated → Arthropoda	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.76%
Peat	Environmental → Terrestrial → Peat	4.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.45%
Freshwater	Environmental → Aquatic → Freshwater	2.59%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.79%
Loam	Environmental → Terrestrial → Soil → Loam	14.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.59%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.17%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.86%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	38.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.72%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.72%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.72%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.72%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022515	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 1-5	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027097	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF019 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1049036983	3300000955	Soil	RKALTLASGDAAAQSSAWRLIADSLRARGDNGGAADADRR
Ga0062387_1010830152	3300004091	Bog Forest Soil	NPLLWVELGRVRLSENNAAQADAMSRKALALATGDPSAQVLAWRLMADALRALGRNPEAAEAERHVAGLATH*
Ga0062389_1040753192	3300004092	Bog Forest Soil	GRVRLSENNAAQADAMSRKALALATGDPSAQVLAWRLMADALRALGRNPEAAEAERHVAGLATH*
Ga0062388_1026600152	3300004635	Bog Forest Soil	GMGHKALALATGDAQAQSSAWRLIADSLRARQRNQEAADADKKAATLSPR*
Ga0066388_1071310252	3300005332	Tropical Forest Soil	TGDPGAQSSAWHLIADALRARGDNGGAADAERRATSLAPH*
Ga0070709_106763451	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	WIELGQIRLSENNPGQANSMGHKALALATGDAQAQASAWRLVAESLRGLNRNDEAAEADKKANTLSPR*
Ga0070711_1020182551	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NNPGQADAMGHKALALATGDPQAQASAWRLVAESLRQLGRNDEAADADKKAGALSPR*
Ga0070684_1013910202	3300005535	Corn Rhizosphere	QLSENNGDQADSMGRKALALATGDPQAQSASWRLIADSLRLRHRNAEAAEADQKAAGLAASFLGAQGR*
Ga0070672_1018031191	3300005543	Miscanthus Rhizosphere	SNPAQADSMGRKALALATGDAAAQASAWHLIADSLKARGRNGEAAEAERHAEGPVAH*
Ga0070686_1015056081	3300005544	Switchgrass Rhizosphere	ESNPAQADSMGRKALALATGDAAAQASAWHLIADSLKARGRNGEAAEAERHAEGPVAH*
Ga0066695_100909181	3300005553	Soil	AMGHKALALATGDAGAQAAAWHLIADSLHSRGRDPEAADAEGRAGALAPR*
Ga0070762_112342781	3300005602	Soil	ADAMGRKALALATGDPSAQASAWHLIADSLKARGRNGEAAEAEQKAQGVGARAG*
Ga0070764_100909751	3300005712	Soil	VRLAENNAPQADAMGRKALALGVGDPAAQAAAWHLIADSLKARGRNGEAAEAEQKAQGVAARQG*
Ga0070766_100459701	3300005921	Soil	VHQNAGHYAQADSMGHKALQLAGGDPRAQASAWRVIAQSLRARDRNTEAADAEARARVLLPQ*
Ga0070765_1023015651	3300006176	Soil	VRLGETNPAQANAMGRKALALAVGDPAAQGAAWHLIADSLRAQGRNGEAAEAEQKAQGLSPR*
Ga0066709_1008605373	3300009137	Grasslands Soil	ADAMGHKALALATGDAGAQAAAWHLIADSLHSRGRDPEAADAEGRAGALAPR*
Ga0066709_1046683782	3300009137	Grasslands Soil	ADAMGHKALALATGDAGAQAAAWHLIADSLHSRGRDPEAAEAEGRAGALAPR*
Ga0105238_115724963	3300009551	Corn Rhizosphere	ELGRVRYTAGDYSQADSMGHKALALATGDVQAQASAWHLIADSLRSRRRNEEAATADAKANALSPR*
Ga0105249_113936852	3300009553	Switchgrass Rhizosphere	GRKALALATGDAAAQASAWHLIADSLKARGRNGEAAEAERHAEGPVAH*
Ga0126373_106790452	3300010048	Tropical Forest Soil	RKALALATGDPSAQSSAWHLIADSLRARGNNGEAADAERRAGSLAPH*
Ga0126373_127363841	3300010048	Tropical Forest Soil	AMGRKALALATGDPGAQSAAWHLIADALRARGDNGGAADADRRAASLAPH*
Ga0123356_120139272	3300010049	Termite Gut	QAGNTGKKALQLASGDPGTQAQAWHLIADSLKAQGKDADAADAERHAEGLAAR*
Ga0134125_105316063	3300010371	Terrestrial Soil	ENNPGQANSMGHKALALATGDVQAQASAWRLVAESLRGLNRNDEAAEADKKANALSPR*
Ga0105239_122234572	3300010375	Corn Rhizosphere	GDQADSMGRKAIGLATGDAQAQSVAWRLVADSLRLRHRNSEAAEADQKAAGLAASITAR*
Ga0126381_1015379771	3300010376	Tropical Forest Soil	DAMGRKALALAGGDTEAQAEAWSLIADSLRALDRNSEAADADRHAAALAPR*
Ga0134126_100708071	3300010396	Terrestrial Soil	ADSMGRKALALATGDPQAQSASWRLIADSLRLRHRNAEAAEADQKAAGLAASFLGAQGR*
Ga0137388_111511121	3300012189	Vadose Zone Soil	RKALALATGDAGAQAGAWHLIADSLRALGRNPEAAEADGRAGSLAPR*
Ga0126369_104133111	3300012971	Tropical Forest Soil	KALALATGDPAAQSSAWHLIADALRAYGDNAGAADADRRAASLAPH*
Ga0157369_105026103	3300013105	Corn Rhizosphere	MGRKALALDTGDPQAQSASWRLIADSLRLRHRNAEAAEADQKAAGLAASFLGAQGR*
Ga0182024_112936041	3300014501	Permafrost	RMRLGGGDAEQAEAMGHKALALGTGDPSAQSNAWHLIADSLQARGSNSQAAEAERRAAGFAPR*
Ga0137418_106001931	3300015241	Vadose Zone Soil	RKALALATGDAGAQAGAWHLIADSLRALGRNPEAAEAEGRAGSLAPR*
Ga0132258_107583151	3300015371	Arabidopsis Rhizosphere	QADSMGRKALALATGDAAAQASAWHLIADSLKARGRNGEAAEAERHAEGPAAH*
Ga0182035_113077451	3300016341	Soil	KALALATGDPGAQSSAWHLIADALRARGDNGGAADADRHATSLAAH
Ga0182034_116856862	3300016371	Soil	ADAMGRKALTLAGGDPAAQSSAWHLIADALRARGDNGGAAEAEQRAASLAPQ
Ga0187780_110980872	3300017973	Tropical Peatland	AMGRKALILGTGDPVAQSSAWRLIADSLRARGRNADAYDADRRAWSLAPR
Ga0206350_101026451	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	RKALALATGDPQAQSASWRLIADSLRLRHRNAEAAEADQKAAGLAASFLGAQGR
Ga0210405_113459481	3300021171	Soil	ENNPAQADAMGRKALALATGDAAAQSSAWHLIADSLRALGRNGDAAEAEQHAQGVASR
Ga0210397_104639692	3300021403	Soil	LGENNPAEADAMGRKALALATGDAAAQSSAWHLIADSLRALGRNGDAAEAEQHAQGVASR
Ga0126371_124779302	3300021560	Tropical Forest Soil	AQSSAWHLIADALRARGDNAGAADADGRAASLAPH
Ga0224546_10059281	3300022515	Soil	GDPAAQASSWHLIADSLRARGRNQEAEDAERRAGSLATR
Ga0137417_12906061	3300024330	Vadose Zone Soil	KALALATGDANAQASAWRLIADSLRSRRRNEEAAEADKRANTLAPR
Ga0207699_112497081	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	QGQANSMGHKALALATGDAQAQASAWRLVAESLRGLNRNDEAAEADKKANSLSPR
Ga0207652_116679241	3300025921	Corn Rhizosphere	MGRKALALATGDPQAQSSSWRLIAESLRMQGRNPEAAEADRKASAVSVR
Ga0207694_105072761	3300025924	Corn Rhizosphere	NSMGHKALALATGDVQAQASAWRLVAESLRGLNRNDEAAEADKKANSLSPR
Ga0207700_115774461	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KALALATGDHAAESNAWRLIAESLRARGRNQEAADADRKSEQLAPR
Ga0207664_114893723	3300025929	Agricultural Soil	MGRKALTLASGDAAAQSSAWRLIADSLRARGDNGG
Ga0207665_113143132	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RKALALATGDARAQSSAWHLIADTLRAQNRNQEAADADQKAASLSPR
Ga0207691_114616421	3300025940	Miscanthus Rhizosphere	LAESNPAQADSMGRKALALATGDAAAQASAWHLIADSLKARGRNGEAAEAERHAEGPVAH
Ga0207667_105975401	3300025949	Corn Rhizosphere	RYTAGDYSQADSMGHKALALATGDVQAQASAWHLIADSLRSRRRNEEAATADAKANALSP
Ga0207712_113940782	3300025961	Switchgrass Rhizosphere	SMGRKALALATGDAAAQASAWHLIADSLKARGRNGEAAEAERHAEGPVAH
Ga0207676_122240101	3300026095	Switchgrass Rhizosphere	QADSMGHKALALATGDVQAQASAWHLIADSLRSRRRNEEAATADAKANALSPR
Ga0207676_124828271	3300026095	Switchgrass Rhizosphere	YSQADSMGHKALALATGDVQAQASAWHLIADSLRSRRRNEEAATADAKANALSPR
Ga0208861_1098551	3300027097	Forest Soil	KALQLATGDPSAQAAAWHLIADSLRARGNNELAAEAEQHAASFSPR
Ga0209420_10499611	3300027648	Forest Soil	VRLGANDPAQADAMAHKALALATGDLAAQSSAWHLIADSLRARRRNPEAAEAEERAKNLAAQ
Ga0209275_108885691	3300027884	Soil	MGRKALALATGDPSAQASAWHLIADSLKARGRNGEAAEAEQKAQGVGARAG
Ga0311338_108159461	3300030007	Palsa	QADGMGHKALALATGDAQAQSSAWRLIADSLRARQRNQEAADADKRAATLSPR
Ga0302314_110197882	3300030906	Palsa	LTLAAGDPAAQASSWHLIADSLRARGRNQEAEDAERRAGSLATR
Ga0170824_1287640401	3300031231	Forest Soil	ELGQLRLSENNAVQANGMGRKALALATGDTRAQSSAWHLIADTLRAQNRNQEAADADQKAASLSPR
Ga0302323_1007739981	3300031232	Fen	SQADSMGHKALALASGDAQAQASAWRLIADSLRSRRRNEEAAAADQKANTLSAR
Ga0302323_1028463292	3300031232	Fen	TAGDYSQADGIGHKALALSTGDPQAQASAWHLIADSLRSRRRNEEAADADKRANALVPK
Ga0265340_101358633	3300031247	Rhizosphere	AEQADSMGHKALALATGDVQAQASAWRLIADSLRALQRNQEAADADKKAAALSPR
Ga0170820_104066061	3300031446	Forest Soil	LGRKALALATGDTRAQSSAWHLIADTLRAQNRNQEAADADQKAASLSPR
Ga0170819_104904301	3300031469	Forest Soil	KALALATGDTRAQSSAWHLIADTLRAQNRNQEAADADQKAASLSPR
Ga0170818_1033649524	3300031474	Forest Soil	VQANGMGRKALALATGDTRAQSSAWHLIADTLRAQNRNQEAADADQKAASLSPR
Ga0318516_100191742	3300031543	Soil	LATGDPGAQSSAWHLIADALRARGDNGGAADADRRAAIPAPH
Ga0318534_100598522	3300031544	Soil	KALALATGDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318573_101921602	3300031564	Soil	ATGDPAAQSSAWHLIADSLRASGRNGEAAEAEQRAAGLAPH
Ga0318542_103013352	3300031668	Soil	DPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318542_103015521	3300031668	Soil	ALTLSSGDAAAQSSAWRLIADALRARGDNGGAAEAERRAASLAPQ
Ga0318561_100333073	3300031679	Soil	PAAQSSAWHLIADSLRARGDNGGAADADRHATSLAAH
Ga0318561_104811861	3300031679	Soil	GGDPAAQSSAWHLIADALRARGDNGGAAEAEQRAASLAPQ
Ga0318560_101031142	3300031682	Soil	DPGAQSSAWRLIADALRARGDNGGAADADRRAASLAPH
Ga0318496_100115411	3300031713	Soil	RKALALATGDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318496_100420561	3300031713	Soil	GLAANNPAQADAMGRKALALATGDPAAQSSAWHLIADSLRARGDNGGAADADRHATSLAA
Ga0307476_107246371	3300031715	Hardwood Forest Soil	NAAQADGMGHKALALATGDAQAQSSAWRLIADSLRARQRNQEAADADKKAATLSPR
Ga0307476_114376051	3300031715	Hardwood Forest Soil	MGRKALALATGDPSAEAAAWRLIADSLHARGRTADALEAEQRAASLAPQ
Ga0306918_101036251	3300031744	Soil	LTLASGDAAAQSSAWRLIADALRARGDNGGAAEAERRAASLAPQ
Ga0318492_100439811	3300031748	Soil	TGDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318492_107077861	3300031748	Soil	GRKALALATGDPSAQSSAWYLIADSLRARGNNGEAADAERRAASLAPH
Ga0318494_106630321	3300031751	Soil	RKALALATGDPAAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0318535_101325341	3300031764	Soil	NNPAQADAMGRKALTLAGGDPAAQSSAWHLIADALRARGDNGGAAEAEQRAASLAPQ
Ga0318554_106452682	3300031765	Soil	PSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318509_100471921	3300031768	Soil	AQADAMGRKALALATGDPAAQSSAWHLIADSLRARGDNGGAADADRHATSLAAH
Ga0318509_102875992	3300031768	Soil	ANSMGRKALALATGDPGAQSSAWRLIADALRARGDNGGAADADRRAASLAPH
Ga0318526_101164292	3300031769	Soil	SGDAAAQSSAWRLIADSLRARGDNGGAADAERRAASLSPR
Ga0318526_103670722	3300031769	Soil	AMGRKALALATGDPAAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0318546_108050252	3300031771	Soil	SMGRKALALATGDPGAQSSAWRLIADALRARGDNGGAADADRRAASLAPH
Ga0318498_100712321	3300031778	Soil	ENNPAQADAMGRKALTLAGGDPAAQSSAWHLIADALRARGDNGGAAEAEQRAASLAPQ
Ga0318547_100572512	3300031781	Soil	GDPAAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0318547_105459802	3300031781	Soil	GRKALALATGDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318552_102727051	3300031782	Soil	LTLASGDAAAQSSAWRLIADSLRARGDNGGAADAERRAASLSPR
Ga0318548_101678421	3300031793	Soil	ALALATGDASAQSSAWRLIADALRARGDDGGAADAERRAASLATR
Ga0318576_100556521	3300031796	Soil	PAQADAMGRKALTLAGGDPAAQSSAWHLIADALRARGDNGGAAEAEQRAASLAPQ
Ga0318576_106225871	3300031796	Soil	GRKALALATGDPGAQSSAWRLIADALRARGDNGGAADADRRAASLAPH
Ga0318497_101983381	3300031805	Soil	DTAAQSSAWRLIADALRARGDNGGAAEADRRAASLAPR
Ga0318564_100358552	3300031831	Soil	LATGDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318499_102934801	3300031832	Soil	GDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0310917_101198741	3300031833	Soil	KALALATGDPGAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0318495_101955572	3300031860	Soil	ALTLASGDAAAQSSAWRLIADSLRARGDNGGAADAERRAASLSPR
Ga0306919_106459302	3300031879	Soil	VRLAENNPAQADAMGRKALALATGDPGAQSSAWHLIADALRARGDNGGAADADRRAAIPAPH
Ga0306926_122436361	3300031954	Soil	VRLAENNPAQADAMGRKALALATGDPAAQSSAWHLIADALRTRGDNGGAAEADRRAESLAPH
Ga0306926_125005372	3300031954	Soil	AQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318530_101694722	3300031959	Soil	PAQADAMGRKALALATGDPGAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0307479_109926521	3300031962	Hardwood Forest Soil	GRVRLGENNPAQADALGHKALTLASGDPVAQATGWRLIADAARARGRNADAYDADRRAQGLSPR
Ga0318563_100497422	3300032009	Soil	ANAMGRKALALATGDPAAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0318563_101417711	3300032009	Soil	RKALALATGDPAAQSSAWHLIADSLRARGDNGGAADADRHATSLAAH
Ga0318563_104727151	3300032009	Soil	RMGDNNPGQADAMGRKALALSTGDATTQASAWQLISDALKAEGKNGEAAEAERHIAAAAP
Ga0318570_100041333	3300032054	Soil	DAMGRKALALATGDPAAQSSAWHLIADSLRARGDNGGAADADRHATSLAAH
Ga0318513_100281313	3300032065	Soil	RVRLAANNPAQADAMGRKALALATGDPAAQSSAWHLIADSLRARGDNGGAADADRHATSLAAH
Ga0318514_102869012	3300032066	Soil	GHKALALATGDPAAQSSAWHLIADSLRASGRNGEAAEAEQRAAGLAPH
Ga0318524_101405713	3300032067	Soil	AAQSSAWHLIADALRARGDNGGAAEAEQRAASLAPQ
Ga0318518_100286643	3300032090	Soil	DPAAQSSAWHLIADSLRARGDNGGAADADRHATSLAAH
Ga0306920_1031448001	3300032261	Soil	GRVHLGANDAVQADAMGHKALALATGDPAAQSSAWHLIADSLRASGRNGEAAEAEQRAAGLAPH
Ga0318519_100919611	3300033290	Soil	AMGRKALALATGDPSAQSSAWHLIADALRARGDNAGAAEADGRAASLAPH
Ga0318519_108509361	3300033290	Soil	ANSMGRKALALATGDPGAQSSAWHLIADALRARGDNGGAADADRRAASLAPH
Ga0316624_100004241	3300033486	Soil	ADAMGRKALALATGDASAQGAAWHLIGDSLRARGRNAEAAEADQRAQGPVLR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078939

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences