Metagenome / Metatranscriptome Family F078940

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078940
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	71 residues
Representative Sequence	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHRYK
Number of Associated Samples	91
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	49.14 %
% of genes near scaffold ends (potentially truncated)	39.66 %
% of genes from short scaffolds (< 2000 bps)	84.48 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.759 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.448 % of family members)
Environment Ontology (ENVO)	Unclassified (33.621 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.069 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.65% β-sheet: 0.00% Coil/Unstructured: 35.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF00474	SSF	8.62
PF06738	ThrE	4.31
PF00144	Beta-lactamase	3.45
PF10979	DUF2786	2.59
PF02885	Glycos_trans_3N	1.72
PF14520	HHH_5	0.86
PF02737	3HCDH_N	0.86
PF13472	Lipase_GDSL_2	0.86
PF04542	Sigma70_r2	0.86
PF01656	CbiA	0.86
PF12811	BaxI_1	0.86
PF13714	PEP_mutase	0.86
PF01471	PG_binding_1	0.86
PF01850	PIN	0.86
PF14023	DUF4239	0.86
PF13374	TPR_10	0.86
PF13676	TIR_2	0.86
PF01568	Molydop_binding	0.86
PF04545	Sigma70_r4	0.86
PF05685	Uma2	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG2966	Uncharacterized membrane protein YjjP, DUF1212 family	Function unknown [S]	4.31
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	3.45
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	3.45
COG2367	Beta-lactamase class A	Defense mechanisms [V]	3.45
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.86
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.86
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.86
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.86
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.86
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.86
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.86
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.86
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.86
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
All Organisms	root	All Organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
cellular organisms	root	All Organisms → cellular organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.24 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	12.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.59 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	12.07 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.86 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	9.48 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	9.48 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Boseongicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Boseongicola	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Paraburkholderia ribeironis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	9.48 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.86 %
unclassified Boseongicola	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Boseongicola → unclassified Boseongicola	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Paraburkholderia ribeironis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	9.48 %
Boseongicola sp. SB0675_bin_26	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Boseongicola → unclassified Boseongicola → Boseongicola sp. SB0675_bin_26	0.86 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.86 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100168291	Not Available	2072	Open in IMG/M
3300002245\|JGIcombinedJ26739_100405732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	1241	Open in IMG/M
3300002245\|JGIcombinedJ26739_100615606	Not Available	963	Open in IMG/M
3300002245\|JGIcombinedJ26739_101848236	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300003219\|JGI26341J46601_10013318	All Organisms → cellular organisms → Bacteria	2696	Open in IMG/M
3300003219\|JGI26341J46601_10048574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1331	Open in IMG/M
3300004092\|Ga0062389_102867327	Not Available	644	Open in IMG/M
3300004092\|Ga0062389_104047385	Not Available	551	Open in IMG/M
3300005437\|Ga0070710_10279555	Not Available	1083	Open in IMG/M
3300005439\|Ga0070711_101258162	Not Available	641	Open in IMG/M
3300005536\|Ga0070697_100055339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3225	Open in IMG/M
3300005764\|Ga0066903_106395802	Not Available	614	Open in IMG/M
3300006028\|Ga0070717_10022384	All Organisms → cellular organisms → Bacteria	4994	Open in IMG/M
3300006176\|Ga0070765_102251346	Not Available	508	Open in IMG/M
3300006176\|Ga0070765_102290074	Not Available	503	Open in IMG/M
3300009176\|Ga0105242_10819614	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	923	Open in IMG/M
3300009792\|Ga0126374_10613833	Not Available	805	Open in IMG/M
3300010043\|Ga0126380_10633138	Not Available	848	Open in IMG/M
3300010046\|Ga0126384_10074761	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300010047\|Ga0126382_10107796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1816	Open in IMG/M
3300010343\|Ga0074044_10069565	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2384	Open in IMG/M
3300010359\|Ga0126376_10549173	Not Available	1081	Open in IMG/M
3300010361\|Ga0126378_10593850	Not Available	1222	Open in IMG/M
3300010361\|Ga0126378_10754420	Not Available	1084	Open in IMG/M
3300010366\|Ga0126379_10582419	Not Available	1202	Open in IMG/M
3300010366\|Ga0126379_10902507	Not Available	986	Open in IMG/M
3300010376\|Ga0126381_102223421	Not Available	789	Open in IMG/M
3300010379\|Ga0136449_100151916	All Organisms → cellular organisms → Bacteria	4540	Open in IMG/M
3300010856\|Ga0126358_1062944	Not Available	517	Open in IMG/M
3300010856\|Ga0126358_1246989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	830	Open in IMG/M
3300010865\|Ga0126346_1364600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	716	Open in IMG/M
3300012181\|Ga0153922_1089690	Not Available	695	Open in IMG/M
3300012582\|Ga0137358_10655590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	702	Open in IMG/M
3300012685\|Ga0137397_10551146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	858	Open in IMG/M
3300012957\|Ga0164303_10461863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	802	Open in IMG/M
3300012960\|Ga0164301_11426313	Not Available	567	Open in IMG/M
3300013297\|Ga0157378_10380655	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1386	Open in IMG/M
3300014164\|Ga0181532_10222972	Not Available	1094	Open in IMG/M
3300014200\|Ga0181526_10357068	Not Available	929	Open in IMG/M
3300016294\|Ga0182041_10391308	Not Available	1180	Open in IMG/M
3300016294\|Ga0182041_10811602	Not Available	836	Open in IMG/M
3300016294\|Ga0182041_10823348	Not Available	831	Open in IMG/M
3300016357\|Ga0182032_10495285	Not Available	1004	Open in IMG/M
3300016371\|Ga0182034_10193656	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300016371\|Ga0182034_10620930	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300016445\|Ga0182038_11276763	Not Available	656	Open in IMG/M
3300017970\|Ga0187783_11012135	Not Available	599	Open in IMG/M
3300018034\|Ga0187863_10086395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	1763	Open in IMG/M
3300020579\|Ga0210407_10172626	Not Available	1673	Open in IMG/M
3300020579\|Ga0210407_10346341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1162	Open in IMG/M
3300020579\|Ga0210407_11286591	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	547	Open in IMG/M
3300020581\|Ga0210399_10628672	Not Available	887	Open in IMG/M
3300020582\|Ga0210395_10001792	All Organisms → cellular organisms → Bacteria	16666	Open in IMG/M
3300020583\|Ga0210401_10591730	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300020583\|Ga0210401_11287928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	589	Open in IMG/M
3300021178\|Ga0210408_10224990	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300021361\|Ga0213872_10056724	Not Available	1774	Open in IMG/M
3300021405\|Ga0210387_10000393	All Organisms → cellular organisms → Bacteria	31172	Open in IMG/M
3300021407\|Ga0210383_10053378	All Organisms → cellular organisms → Bacteria	3367	Open in IMG/M
3300021444\|Ga0213878_10183905	Not Available	875	Open in IMG/M
3300021477\|Ga0210398_10795108	Not Available	762	Open in IMG/M
3300021560\|Ga0126371_11803699	Not Available	733	Open in IMG/M
3300027605\|Ga0209329_1097926	Not Available	641	Open in IMG/M
3300027674\|Ga0209118_1214581	Not Available	515	Open in IMG/M
3300027727\|Ga0209328_10045080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	1354	Open in IMG/M
3300027812\|Ga0209656_10000728	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	21365	Open in IMG/M
3300027812\|Ga0209656_10046567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2477	Open in IMG/M
3300027812\|Ga0209656_10123499	Not Available	1330	Open in IMG/M
3300027874\|Ga0209465_10068088	All Organisms → cellular organisms → Bacteria	1723	Open in IMG/M
3300027908\|Ga0209006_10024568	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5457	Open in IMG/M
3300027908\|Ga0209006_10208276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1695	Open in IMG/M
3300028906\|Ga0308309_11510166	Not Available	574	Open in IMG/M
3300029999\|Ga0311339_10694979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	996	Open in IMG/M
3300030007\|Ga0311338_10272052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1890	Open in IMG/M
3300030043\|Ga0302306_10079279	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300030053\|Ga0302177_10546130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	596	Open in IMG/M
3300030054\|Ga0302182_10270938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	718	Open in IMG/M
3300030399\|Ga0311353_10193949	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300030399\|Ga0311353_10828862	Not Available	787	Open in IMG/M
3300031234\|Ga0302325_12859597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia ribeironis	563	Open in IMG/M
3300031236\|Ga0302324_100707418	All Organisms → cellular organisms → Bacteria → PVC group	1421	Open in IMG/M
3300031543\|Ga0318516_10616768	Not Available	619	Open in IMG/M
3300031545\|Ga0318541_10097180	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300031546\|Ga0318538_10385638	Not Available	758	Open in IMG/M
3300031573\|Ga0310915_10334026	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300031640\|Ga0318555_10344165	Not Available	808	Open in IMG/M
3300031679\|Ga0318561_10649735	Not Available	580	Open in IMG/M
3300031708\|Ga0310686_101196265	All Organisms → cellular organisms → Bacteria	13949	Open in IMG/M
3300031744\|Ga0306918_11085716	Not Available	620	Open in IMG/M
3300031754\|Ga0307475_10289309	All Organisms → cellular organisms → Bacteria → Proteobacteria	1315	Open in IMG/M
3300031792\|Ga0318529_10128059	Not Available	1160	Open in IMG/M
3300031879\|Ga0306919_11028193	Not Available	629	Open in IMG/M
3300031894\|Ga0318522_10182930	Not Available	793	Open in IMG/M
3300031897\|Ga0318520_10234933	Not Available	1090	Open in IMG/M
3300031910\|Ga0306923_11139710	Not Available	837	Open in IMG/M
3300031912\|Ga0306921_10218642	Not Available	2233	Open in IMG/M
3300031912\|Ga0306921_10956961	Not Available	968	Open in IMG/M
3300031912\|Ga0306921_11194419	Not Available	847	Open in IMG/M
3300031912\|Ga0306921_11912621	Not Available	634	Open in IMG/M
3300031942\|Ga0310916_10103962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Boseongicola → unclassified Boseongicola → Boseongicola sp. SB0675_bin_26	2286	Open in IMG/M
3300031942\|Ga0310916_11474893	Not Available	555	Open in IMG/M
3300031942\|Ga0310916_11722315	Not Available	506	Open in IMG/M
3300031945\|Ga0310913_11183243	Not Available	532	Open in IMG/M
3300031946\|Ga0310910_10964627	Not Available	667	Open in IMG/M
3300031954\|Ga0306926_10841060	Not Available	1103	Open in IMG/M
3300031981\|Ga0318531_10539798	Not Available	528	Open in IMG/M
3300032008\|Ga0318562_10435797	Not Available	761	Open in IMG/M
3300032025\|Ga0318507_10263467	Not Available	748	Open in IMG/M
3300032059\|Ga0318533_10843390	Not Available	672	Open in IMG/M
3300032063\|Ga0318504_10369731	Not Available	682	Open in IMG/M
3300032065\|Ga0318513_10453338	Not Available	627	Open in IMG/M
3300032090\|Ga0318518_10461422	Not Available	651	Open in IMG/M
3300032160\|Ga0311301_10154852	All Organisms → cellular organisms → Bacteria	4126	Open in IMG/M
3300032261\|Ga0306920_100098463	All Organisms → cellular organisms → Bacteria	4328	Open in IMG/M
3300032261\|Ga0306920_100614090	Not Available	1608	Open in IMG/M
3300033289\|Ga0310914_11225353	Not Available	652	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.55%
Host-Associated	Host-Associated	3.45%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.93%
Aquatic	Environmental → Aquatic	8.62%
Plants	Host-Associated → Plants	2.59%
Fungi	Host-Associated → Fungi	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.17%
Freshwater	Environmental → Aquatic → Freshwater	8.62%
Peat	Environmental → Terrestrial → Peat	7.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.59%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.93%
Loam	Environmental → Terrestrial → Soil → Loam	15.52%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.07%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.72%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.66%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.59%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.59%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.86%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010856	Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1001682912	3300002245	Forest Soil	MGTGPIRLDMAHEKLIRLLNFLWLLLVIPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIIGGRDGSHRDRGK*
JGIcombinedJ26739_1004057322	3300002245	Forest Soil	ILWLLLVFPVAVAVSVGFVGHNATLGIKTFLLIEFGIAILSPLLSAIFGSRDPSPRNRK*
JGIcombinedJ26739_1006156062	3300002245	Forest Soil	MPHEKLIRLLNFLWLLVMFPAVVALLAGLISHSPTFGIKAFLLIEFGVAILSPLLTAILEGQDTLPRNRRK*
JGIcombinedJ26739_1018482361	3300002245	Forest Soil	MAHEKLLRLLNILWLLLVLPVAVAVSVGFVGHSATLGIKTFLLIEFGIAILSPLLSAI
JGI26341J46601_100133181	3300003219	Bog Forest Soil	MAHDKLIRLLNLVWLVVVFPVAVGILVGFLSHSPTLGIKAFLLIECGVAILSPLLTAIFGDGDPSHRNRGK*
JGI26341J46601_100485741	3300003219	Bog Forest Soil	MAHDKLIRLLNLVWLVVVFPVAVAILVGFLSHSPTLGIKAFLLIEFGVAILSPLLTAIFGDGDPSHRNRGK*
Ga0062389_1028673272	3300004092	Bog Forest Soil	MAHEKLIRLLNYVWLVVVFPAAAAISAGFLGHSLTLGIKTFLLIESGVAIASPLLSAIFGGGDTSHRNGGK*
Ga0062389_1040473852	3300004092	Bog Forest Soil	MMEPTRLDMAHEKLIRLLNFLWLLLVFPAVVAVLVGFLGHSATLGIKTFLLIESGVAILSPLLTAILWSRDT*
Ga0070710_102795551	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGNRSARKLLDMAHEKLVHLLNFLSLLLVLPATVAILAGVVSHSPTFGIKTFLLIEVGIAILSPLLTAILDFREPSRRNRGK*
Ga0070711_1012581621	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LSRLGFIILHTGEIRLDMAHEKLIRLLNFLWLLLVFPGAVGILVGFLSHSPTLGIKTFLLIEVGIAIVSPLLTAILGARDGAHRNRGK*
Ga0070697_1000553394	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAHEKLLRLLNLVWLLLAFPSVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPSLTAIIDGRETSGRHRHK*
Ga0066903_1063958021	3300005764	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGR
Ga0070717_100223846	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MAHEKLLRLLNLVWLLLAFPSVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRDRS*
Ga0070765_1022513461	3300006176	Soil	TGPIRLDMAHEKLIRLLNFLWLLLVFPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIIGRRDGSHRDRGK*
Ga0070765_1022900742	3300006176	Soil	MGTDPTDMAHEKLIRLLNFLWLLPVFPALVAILVGFLGHSATLGIKSFLLIESGVAILSPLLTAILGSRDA*
Ga0105242_108196142	3300009176	Miscanthus Rhizosphere	MAHEKLIRLLNFLWLLLVFPGAVGILVGFLSHSPTLGIKTFLLIEVGIAIVSPLLTAILGARDGAHRNRGK*
Ga0126374_106138331	3300009792	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDTRETSDRHR*
Ga0126380_106331382	3300010043	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDTRETSGRHR*
Ga0126384_100747614	3300010046	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHRYK*
Ga0126382_101077963	3300010047	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRHK*
Ga0074044_100695652	3300010343	Bog Forest Soil	MAHDKLIRLLNLVWLVVVFPIAVAILVGFLSHSPTLGIKAFLLIGSGVAILSPLLTAIFGDGDPSHRNRGK*
Ga0126376_105491731	3300010359	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDDWETLGSFRYK*
Ga0126378_105938502	3300010361	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGCGIAILSPLLTAIIDARETSGRHR*
Ga0126378_107544201	3300010361	Tropical Forest Soil	LVLDMAHERLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETLGRHRYK*
Ga0126379_105824192	3300010366	Tropical Forest Soil	MAHEKLLRLLNLIWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDVRETSGRHRYK*
Ga0126379_109025072	3300010366	Tropical Forest Soil	LDMAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGVKTFLLIGFGIAILSPLLTAIIDARETSGRPRYK*
Ga0126381_1022234211	3300010376	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTA
Ga0136449_1001519164	3300010379	Peatlands Soil	MAHEKLLRLLNFLWLLLVFPAVVALLVGFLGHSVSLGVKTFLLIEFGVAILSPLLTAIIWGRDSSHRSRGK*
Ga0126358_10629441	3300010856	Boreal Forest Soil	AKSIQARYMAHEKLLRLLNILWLLLVLPVAVAVSVGFVGHSATLGIKTFLLIEFGIAILSPLLSAILGSRDPSHRNRGK*
Ga0126358_12469892	3300010856	Boreal Forest Soil	QSRSRQGIMAHEKLLWLLNILWLLLVFPVAVAVSVGFVGHNATLGIKTFLLIEFGIAILSTLLSAILGSRDPSPRNRGK*
Ga0126346_13646002	3300010865	Boreal Forest Soil	KSIQARYMAHEKLLRLLNILWLLLVLPVAVAVSVGFVGHSATLGIKTFLLIEFGIAILSPLLSAILGSRDPSHRNRGK*
Ga0153922_10896901	3300012181	Attine Ant Fungus Gardens	MAHEKLLRLLNLVCLLLAFPCVVAILVGFLGQSATLGIKTFLLIEFGIAILSPLLTAIMGGRETSGRHRQK*
Ga0137358_106555902	3300012582	Vadose Zone Soil	MAHEKLIRLLNFLWLLLVFPGAVGILVGFLSHSPTLGIKTLLLIEVGIAILSPLLTAILGARDGAH
Ga0137397_105511461	3300012685	Vadose Zone Soil	LLVFPGAVGILVGFLSHSPTLGIKTLLLIEVGIAILSPLLTAILGARDGAHRDRGNKSA*
Ga0164303_104618632	3300012957	Soil	LSRLGFIILHTGEIRLDMAHEKLIRLLNFLWLLLVFPGAVGILVGFLSHSPTLGIKTFLLIEVGIAILSPLLMAILGARDGAHRNRGK*
Ga0164301_114263131	3300012960	Soil	MAHEKLIRLLNFLWLLLVFPGAVGIMVGFLSHSPTLGIKTFLLIEVGIAILSPLLMAILGVRDGAHRNRGK*
Ga0157378_103806552	3300013297	Miscanthus Rhizosphere	LSRLGFIILHTGEIRLDMAHEKLIRLLNFLWLLLVFPGAVGILVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAILGARDGAHRNRGKYSA*
Ga0181532_102229722	3300014164	Bog	MAHDKLMRLLNFVWLVVVFPAAGAILAAFLSHNPTVGIKALLLIEFGVAILSPLLTAIFGGGDTSHRNGGK*
Ga0181526_103570682	3300014200	Bog	MAHDKLMRLLNFVWLIVVFPAAGAILAAFLSHNPTVGIKALLLIEFGVAILSPLLTAIFGGGDTSHRNGGK*
Ga0182041_103913082	3300016294	Soil	GLVLDMAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTFGIKAFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0182041_108116021	3300016294	Soil	GLVLDMAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRRRYK
Ga0182041_108233481	3300016294	Soil	DMAHEKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0182032_104952852	3300016357	Soil	LNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHRYK
Ga0182034_101936561	3300016371	Soil	MAHEKLLRLVNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0182034_106209301	3300016371	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMGQSPTLGIKTFLLIGFGIAILSPLLTAI
Ga0182038_112767631	3300016445	Soil	LLRLLNLVWLLLAFPFVVAVLVGFMSQSPTFGIKAFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0187783_110121351	3300017970	Tropical Peatland	MAHEKLIRLLNLAWLVVLFPGASAILVWFITHSPSSGVKVFLLIESGVAILSPLLTAIWGDHDSSHRNRGK
Ga0187863_100863953	3300018034	Peatland	MAHDKLIRLLNFVWLVVVFPAAVATLVGFLSHSPTLGIKAFLLIESGVAILSPLLTAIFGGGDTSHRNGGK
Ga0210407_101726262	3300020579	Soil	MGTDPTDMAHEKLIRLLNFLWLLPVFPALLAILVGFLGHSATLGIKSFLLIESGVAILSPLLTAILGSRDA
Ga0210407_103463412	3300020579	Soil	MPHEKLIRLLNFLWLLLVFPAVVAILVGFLGHSATLGIKAFLLIESGVAILSPLLTAILGSRDT
Ga0210407_112865912	3300020579	Soil	MAHEKLIRLLNFLWLLLVLPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIFGGRD
Ga0210399_106286722	3300020581	Soil	MAHEKLLRLLNLVWLLLAFPSLVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRHK
Ga0210395_100017928	3300020582	Soil	MGTDPTDMAHEKLIRLLNFLWLLPVFPALVAILVGFLGHSATLGIKSFLLIESGVAILSPLLTAILGSRDA
Ga0210401_105917301	3300020583	Soil	MAHEKLLRLLNLVWLLLAFPSVVAVLVGFMSQSPTLGVKTFLLIGFGIAILSPLLTAIIDGRETSGRHRHK
Ga0210401_112879281	3300020583	Soil	MAHEKLIRLLNFLWLLLVFPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIIGGRDGSHRDRGK
Ga0210408_102249902	3300021178	Soil	MAHEKLIRLLNFLWLLLVLPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIFGGRDGSHRHRGK
Ga0213872_100567241	3300021361	Rhizosphere	MAHEKLFRLLHLAWLVVLFPGGAAILVWFLSHSTSLGVKAFLLIESGVAILSPLLTAIWGGRDNSHRNGGK
Ga0210387_1000039312	3300021405	Soil	MGTDPTDMAHEKLIRLLNFLWLLPVFPALVAILVGFLGHSATLGIKSFLLIEAGVAILSPLLTAILGSRDA
Ga0210383_100533781	3300021407	Soil	QPFSFVGVQSTPTTMGTDPTDMAHEKLIRLLNFLWLLPVFPALVAILVGFLGHSATLGIKSFLLIESGVAILSPLLTAILGSRDA
Ga0213878_101839053	3300021444	Bulk Soil	MAHQKLLRLLHLVWLVVVFPGGAAILVWFLSHSTSLGIKAFLLIESGVAILSPLLTAIWGGPDDSHRKRGK
Ga0210398_107951082	3300021477	Soil	QSTPTTMGTDPTDMAHEKLIRLLNFLWLLPVFPALVAILVGFLGHSATLGIKSFLLIESGVAILSPLLTAILGSRDA
Ga0126371_118036992	3300021560	Tropical Forest Soil	LTNKKRGLVLDMAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAVIDARETSGRHRYK
Ga0209329_10979261	3300027605	Forest Soil	MGTGPIRLDMAHEKLIRLLNFLWLLLVIPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIFGGRDGSHRHRGK
Ga0209118_12145812	3300027674	Forest Soil	MAHEKLIRLLNFLWLLLVFPGAVAVLVGFLSHSPTLGIKTFLLIEVGIAILSPLLTAIIGGRDG
Ga0209328_100450801	3300027727	Forest Soil	MAHEKLLRLLNILWLLLVLPVAVAVSVGFVGHSATLGIKTFLLIEFGIAILSPLLSAILGSRDPSPRNRK
Ga0209656_1000072820	3300027812	Bog Forest Soil	MAHDKLIRLLNLVWLVVVFPVAVAILVGFLSHSPTLGIKAFLLIEFGVAILSPLLTAIFGDGDPSHRNRGK
Ga0209656_100465672	3300027812	Bog Forest Soil	MAHDKLIRLLNLVWLVVVFPVAVGILVGFLSHSPTLGIKAFLLIECGVAILSPLLTAIFGDGDPSHRNRGK
Ga0209656_101234991	3300027812	Bog Forest Soil	MPHEKLIRLLNYLWLLLVFPVAVSIVVGLFGHSAHLGIKTFLLIECGMAVLSPLLTAVISGGNNTRSPSGK
Ga0209465_100680883	3300027874	Tropical Forest Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDTRETSDRHR
Ga0209006_100245687	3300027908	Forest Soil	ICDKPPGTARFDMAHEKLIHLLNFLWLLLVFPAAVAVLVAFASHSTTLGIKTFLLIEFGVAIMSPLLTAILAGRDNSHRNGGK
Ga0209006_102082762	3300027908	Forest Soil	MPHEKLIRLLNFLWLLVMFPAVVALLAGLISHSPTFGIKAFLLIEFGVAILSPLLTAILEGQDTLPRNRRK
Ga0308309_115101661	3300028906	Soil	MAHEKLIRLLNFLWLLLVFPATVAILAGVVSHSSTLGIKTFLLIEVGVAILSPLLTAILEYREPASK
Ga0311339_106949792	3300029999	Palsa	DMAHEKLIRLLNFLWLLLVLPGAVAILVGFVSHSSTLGIKTFLLIEVGIAILSPLLTAILAGRTPSQRHRGEIGRRLGR
Ga0311338_102720522	3300030007	Palsa	MAHERLIRLLNFLWLLLVLPGGVAILVGFASHSATLGIKTFLLIEVGVAILSPLLTAILAGRAPSHRNRGK
Ga0302306_100792792	3300030043	Palsa	MAHEKLIRLLNFLWLILVFPAAVAMLVGFVCHSSTLGIKTFLLIEVGVAILSPLLTAIIGGREPSHRNRGK
Ga0302177_105461301	3300030053	Palsa	NRLDMAHEKLIRLLNFLWLLLVLPGAVAILVGFVSHSFTLGIKTFLLIEVGIAILSPLLTAILAGRTPSQRHRGEIGRRLGR
Ga0302182_102709381	3300030054	Palsa	FMAHEKLIRLLNFLWLILVFPAAVAMLVGFVCHSSTLGIKTFLLIEVGVAILSPLLTAIIGGREPSHRNRGK
Ga0311353_101939491	3300030399	Palsa	MAHEKLIRLLNFLWLILVFPAAVAMLVGFVCHSSTLGLKTFLLIEVGVAILSPLLTAIIGGREPSHRNRGK
Ga0311353_108288622	3300030399	Palsa	VQGLILEQKHRSNRLDMAHEKLIRLLNFLWLLLVLPGAVAILVGFVSHSSTLGIKTFLLIEVGIAILSPLLTAILAGRTPSQRHRGEIGRRLGR
Ga0302325_128595971	3300031234	Palsa	LWLLLVLPGGVAILVGFASHSATLGIKTFLLIEVGVAILSPLLTAILAGRAPSHRNRGK
Ga0302324_1007074181	3300031236	Palsa	MAHEKLIRLLNFLWLLLVLPGAVAILVGFVSHSSTLGIKTFLLIEVGIAILSPLLTAILAGRTPSQRHRGEI
Ga0318516_106167681	3300031543	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0318541_100971801	3300031545	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIID
Ga0318538_103856382	3300031546	Soil	VLDMAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAVLSPLLTAIIDARETSGRHRYK
Ga0310915_103340261	3300031573	Soil	NLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0318555_103441651	3300031640	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAVLSPLLTAIIDARETSGRHR
Ga0318561_106497352	3300031679	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDTRETSGRHR
Ga0310686_10119626512	3300031708	Soil	MRFYMAHDKLIRLLNFVWLVVVFPATVAILTGFLSHSPTLGIKAFLLIESGVAILSPLLTAIFGGGDTSHRNGRK
Ga0306918_110857161	3300031744	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMGQSPTLGIKTFLLIGFGIAILSPLLTAIVDARETSGRHRYK
Ga0307475_102893093	3300031754	Hardwood Forest Soil	MVNQQEKVTGIILDMAHEKLLRLLNLVWLLLAFPSVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRDRS
Ga0318529_101280592	3300031792	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0306919_110281932	3300031879	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHRYK
Ga0318522_101829302	3300031894	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRET
Ga0318520_102349331	3300031897	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRPRYK
Ga0306923_111397101	3300031910	Soil	TNKKRGLVLDMAHEKLLRLVNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0306921_102186424	3300031912	Soil	MAHEKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTSGIKTFLLIGFGIAILSPLLTAVIDGRETSGRHRHK
Ga0306921_109569611	3300031912	Soil	RLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHRYK
Ga0306921_111944191	3300031912	Soil	MAHEKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0306921_119126211	3300031912	Soil	RLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAVLSPLLTAIIDARETSGRHRYK
Ga0310916_101039623	3300031942	Soil	MAHEKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTSGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0310916_114748931	3300031942	Soil	LVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAVLSPLLTAIIDARETSGRHRYK
Ga0310916_117223151	3300031942	Soil	EKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAVIDGRETSGRHRHK
Ga0310913_111832431	3300031945	Soil	NLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAVLSPLLTAIIDARETSGRHRY
Ga0310910_109646271	3300031946	Soil	NLVWLLLAFPFVVAVLVGFMSQSPTFGIKAFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0306926_108410604	3300031954	Soil	ELDMAHEKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDGRETSGRHRLPSKSPLV
Ga0318531_105397981	3300031981	Soil	KRGLLLDMAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0318562_104357971	3300032008	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRH
Ga0318507_102634673	3300032025	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDTRE
Ga0318533_108433901	3300032059	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDARETSGRRRYK
Ga0318504_103697311	3300032063	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDAWETSGRHRYK
Ga0318513_104533381	3300032065	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTFGIKAFLLIGFGIAILSPLLTAIIDARETSGRHR
Ga0318518_104614221	3300032090	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAIPSPLLTAIIDARETSGRHRYK
Ga0311301_101548522	3300032160	Peatlands Soil	MAHEKLLRLLNFLWLLLVFPAVVALLVGFLGHSVSLGVKTFLLIEFGVAILSPLLTAIIWGRDSSHRSRGK
Ga0306920_1000984635	3300032261	Soil	MAHEKLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAVLSPLLTAIIDARETSGRHRYK
Ga0306920_1006140902	3300032261	Soil	MAHEKLLRLLNLVWLLLAFPTVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAVI
Ga0310914_112253532	3300033289	Soil	MAHERLLRLLNLVWLLLAFPFVVAVLVGFMSQSPTLGIKTFLLIGFGIAILSPLLTAIIDTRETSGRHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F078940

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences