Metagenome / Metatranscriptome Family F079064

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F079064
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	83 residues
Representative Sequence	MRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRKISDAVHTGNPAPHLRMVPDTE
Number of Associated Samples	64
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	58.04 %
% of genes near scaffold ends (potentially truncated)	23.28 %
% of genes from short scaffolds (< 2000 bps)	68.10 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.60

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (69.828 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (23.276 % of family members)
Environment Ontology (ENVO)	Unclassified (29.310 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (73.276 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.26% β-sheet: 0.00% Coil/Unstructured: 40.74%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.60
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.60
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02954	HTH_8	4.35
PF00216	Bac_DNA_binding	4.35
PF07238	PilZ	3.48
PF00313	CSD	2.61
PF01381	HTH_3	1.74
PF13683	rve_3	1.74
PF05099	TerB	1.74
PF13481	AAA_25	0.87
PF00072	Response_reg	0.87
PF01925	TauE	0.87
PF02627	CMD	0.87
PF04392	ABC_sub_bind	0.87
PF05378	Hydant_A_N	0.87
PF00534	Glycos_transf_1	0.87
PF06147	DUF968	0.87
PF03050	DDE_Tnp_IS66	0.87
PF15919	HicB_lk_antitox	0.87
PF01656	CbiA	0.87
PF13701	DDE_Tnp_1_4	0.87
PF04773	FecR	0.87
PF00005	ABC_tran	0.87
PF00563	EAL	0.87
PF00067	p450	0.87
PF03721	UDPG_MGDP_dh_N	0.87
PF00990	GGDEF	0.87
PF05589	DUF768	0.87
PF11776	RcnB	0.87
PF04014	MazE_antitoxin	0.87
PF13411	MerR_1	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	4.35
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.74
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	1.74
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.87
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.87
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.87
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.87
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.87
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.87
COG2124	Cytochrome P450	Defense mechanisms [V]	0.87
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.87
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.87
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.87
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.87
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.87
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
All Organisms	root	All Organisms	30.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
cellular organisms	root	All Organisms → cellular organisms	30.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.69 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.86 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.48 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.76 %
Nitrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.59 %
Nitrobacter hamburgensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.83 %
Bradyrhizobium sp. ORS 285	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	2.59 %
Nitrobacter hamburgensis X14	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	0.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.86 %
Verrucomicrobia bacterium IMCC26134	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	0.86 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10079608	Not Available	1558	Open in IMG/M
3300002245\|JGIcombinedJ26739_101037727	Not Available	705	Open in IMG/M
3300003505\|JGIcombinedJ51221_10044786	Not Available	1662	Open in IMG/M
3300004092\|Ga0062389_100614527	Not Available	1252	Open in IMG/M
3300005591\|Ga0070761_10485237	Not Available	761	Open in IMG/M
3300005602\|Ga0070762_10520728	Not Available	782	Open in IMG/M
3300006174\|Ga0075014_100131311	Not Available	1204	Open in IMG/M
3300006174\|Ga0075014_100470190	Not Available	698	Open in IMG/M
3300006176\|Ga0070765_100123943	Not Available	2270	Open in IMG/M
3300006176\|Ga0070765_100129915	Not Available	2221	Open in IMG/M
3300006176\|Ga0070765_100209985	Not Available	1770	Open in IMG/M
3300006176\|Ga0070765_100434407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1229	Open in IMG/M
3300006176\|Ga0070765_100716683	Not Available	945	Open in IMG/M
3300006176\|Ga0070765_101186444	Not Available	721	Open in IMG/M
3300006176\|Ga0070765_102188513	Not Available	516	Open in IMG/M
3300006354\|Ga0075021_10549785	Not Available	734	Open in IMG/M
3300009523\|Ga0116221_1469012	Not Available	550	Open in IMG/M
3300009524\|Ga0116225_1070210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	1652	Open in IMG/M
3300009645\|Ga0116106_1217835	Not Available	607	Open in IMG/M
3300009700\|Ga0116217_10387052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	889	Open in IMG/M
3300009839\|Ga0116223_10014371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium IMCC26134	5804	Open in IMG/M
3300009839\|Ga0116223_10492219	Not Available	714	Open in IMG/M
3300009839\|Ga0116223_10510884	Not Available	699	Open in IMG/M
3300010379\|Ga0136449_100018068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18284	Open in IMG/M
3300010379\|Ga0136449_100018068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18284	Open in IMG/M
3300010379\|Ga0136449_100024704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14976	Open in IMG/M
3300010379\|Ga0136449_100035074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11919	Open in IMG/M
3300010379\|Ga0136449_100373885	All Organisms → cellular organisms → Bacteria	2545	Open in IMG/M
3300010379\|Ga0136449_100723449	Not Available	1664	Open in IMG/M
3300010379\|Ga0136449_102597020	Not Available	723	Open in IMG/M
3300014156\|Ga0181518_10016507	All Organisms → cellular organisms → Bacteria → Proteobacteria	5292	Open in IMG/M
3300014158\|Ga0181521_10106298	Not Available	1708	Open in IMG/M
3300014158\|Ga0181521_10282130	Not Available	861	Open in IMG/M
3300014159\|Ga0181530_10004200	All Organisms → cellular organisms → Bacteria → Proteobacteria	15476	Open in IMG/M
3300014159\|Ga0181530_10051251	Not Available	2701	Open in IMG/M
3300014162\|Ga0181538_10106886	Not Available	1642	Open in IMG/M
3300014162\|Ga0181538_10293841	Not Available	884	Open in IMG/M
3300014164\|Ga0181532_10017472	All Organisms → cellular organisms → Bacteria → Proteobacteria	5304	Open in IMG/M
3300014164\|Ga0181532_10104625	Not Available	1758	Open in IMG/M
3300014165\|Ga0181523_10107179	Not Available	1674	Open in IMG/M
3300014489\|Ga0182018_10000576	All Organisms → cellular organisms → Bacteria → Proteobacteria	46559	Open in IMG/M
3300014489\|Ga0182018_10030947	All Organisms → cellular organisms → Bacteria → Proteobacteria	3405	Open in IMG/M
3300014489\|Ga0182018_10629458	Not Available	562	Open in IMG/M
3300014495\|Ga0182015_10006159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12155	Open in IMG/M
3300014501\|Ga0182024_10013168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16218	Open in IMG/M
3300014501\|Ga0182024_10015274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14728	Open in IMG/M
3300014501\|Ga0182024_10669151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1287	Open in IMG/M
3300014501\|Ga0182024_10671976	Not Available	1283	Open in IMG/M
3300014501\|Ga0182024_12169280	Not Available	609	Open in IMG/M
3300014638\|Ga0181536_10081757	Not Available	1914	Open in IMG/M
3300016702\|Ga0181511_1473846	Not Available	777	Open in IMG/M
3300016750\|Ga0181505_10921170	Not Available	679	Open in IMG/M
3300017946\|Ga0187879_10046322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 285	2571	Open in IMG/M
3300017946\|Ga0187879_10802913	Not Available	525	Open in IMG/M
3300018021\|Ga0187882_1409971	Not Available	514	Open in IMG/M
3300018037\|Ga0187883_10143137	Not Available	1233	Open in IMG/M
3300018040\|Ga0187862_10226148	Not Available	1214	Open in IMG/M
3300018044\|Ga0187890_10002905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11897	Open in IMG/M
3300018044\|Ga0187890_10609016	Not Available	616	Open in IMG/M
3300019888\|Ga0193751_1029620	Not Available	2581	Open in IMG/M
3300020581\|Ga0210399_10266936	Not Available	1428	Open in IMG/M
3300020582\|Ga0210395_10000972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22177	Open in IMG/M
3300021180\|Ga0210396_10471776	Not Available	1100	Open in IMG/M
3300021401\|Ga0210393_10165127	Not Available	1783	Open in IMG/M
3300021402\|Ga0210385_10177334	All Organisms → cellular organisms → Bacteria → Proteobacteria	1539	Open in IMG/M
3300021402\|Ga0210385_10232846	Not Available	1349	Open in IMG/M
3300021405\|Ga0210387_10342466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1320	Open in IMG/M
3300021405\|Ga0210387_11012197	Not Available	728	Open in IMG/M
3300021406\|Ga0210386_11186926	Not Available	646	Open in IMG/M
3300021407\|Ga0210383_10578385	Not Available	969	Open in IMG/M
3300021420\|Ga0210394_10020044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6222	Open in IMG/M
3300021420\|Ga0210394_10577831	Not Available	988	Open in IMG/M
3300021420\|Ga0210394_10832309	Not Available	805	Open in IMG/M
3300021420\|Ga0210394_11525088	Not Available	564	Open in IMG/M
3300021474\|Ga0210390_10816044	Not Available	772	Open in IMG/M
3300021477\|Ga0210398_10006639	All Organisms → cellular organisms → Bacteria → Proteobacteria	10601	Open in IMG/M
3300021477\|Ga0210398_10101684	Not Available	2334	Open in IMG/M
3300023259\|Ga0224551_1015382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1288	Open in IMG/M
3300024225\|Ga0224572_1025180	Not Available	1142	Open in IMG/M
3300024227\|Ga0228598_1124199	Not Available	524	Open in IMG/M
3300025500\|Ga0208686_1040074	Not Available	1128	Open in IMG/M
3300027432\|Ga0209421_1011219	All Organisms → cellular organisms → Bacteria	1689	Open in IMG/M
3300027652\|Ga0209007_1052725	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300027853\|Ga0209274_10431408	Not Available	681	Open in IMG/M
3300027854\|Ga0209517_10201599	Not Available	1227	Open in IMG/M
3300027854\|Ga0209517_10427247	Not Available	738	Open in IMG/M
3300027854\|Ga0209517_10440133	Not Available	723	Open in IMG/M
3300027895\|Ga0209624_10910058	Not Available	574	Open in IMG/M
3300027898\|Ga0209067_10907160	Not Available	518	Open in IMG/M
3300027908\|Ga0209006_10171711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1894	Open in IMG/M
3300027908\|Ga0209006_10188640	Not Available	1795	Open in IMG/M
3300027911\|Ga0209698_10067208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3076	Open in IMG/M
3300028906\|Ga0308309_10043540	Not Available	3186	Open in IMG/M
3300028906\|Ga0308309_10194833	Not Available	1666	Open in IMG/M
3300028906\|Ga0308309_10344832	Not Available	1269	Open in IMG/M
3300028906\|Ga0308309_10984538	Not Available	731	Open in IMG/M
3300028906\|Ga0308309_11338840	Not Available	615	Open in IMG/M
3300028906\|Ga0308309_11577681	Not Available	559	Open in IMG/M
3300030706\|Ga0310039_10201348	Not Available	784	Open in IMG/M
3300030815\|Ga0265746_1042616	Not Available	613	Open in IMG/M
3300031090\|Ga0265760_10000686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9646	Open in IMG/M
3300031708\|Ga0310686_116131345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3520	Open in IMG/M
3300032160\|Ga0311301_10046052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10220	Open in IMG/M
3300032160\|Ga0311301_10087857	Not Available	6264	Open in IMG/M
3300032160\|Ga0311301_10164384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3949	Open in IMG/M
3300032160\|Ga0311301_10212811	Not Available	3281	Open in IMG/M
3300032160\|Ga0311301_10318298	Not Available	2471	Open in IMG/M
3300032160\|Ga0311301_10626202	Not Available	1541	Open in IMG/M
3300032160\|Ga0311301_11352509	Not Available	894	Open in IMG/M
3300032160\|Ga0311301_12661263	Not Available	552	Open in IMG/M
3300032160\|Ga0311301_12765675	Not Available	537	Open in IMG/M
3300032783\|Ga0335079_10499692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis → Nitrobacter hamburgensis X14	1297	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.28%
Host-Associated	Host-Associated	1.72%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.28%
Aquatic	Environmental → Aquatic	25.00%
Plants	Host-Associated → Plants	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.41%
Freshwater	Environmental → Aquatic → Freshwater	20.69%
Sediment	Environmental → Aquatic → Sediment	4.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.72%
Peat	Environmental → Terrestrial → Peat	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.10%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	20.69%
Loam	Environmental → Terrestrial → Soil → Loam	20.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.38%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.72%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	23.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.38%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	13.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	9.48%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.31%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.45%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.72%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.86%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.86%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100796081	3300000567	Peatlands Soil	MRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEEIAVLNLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE*
JGIcombinedJ26739_1010377271	3300002245	Forest Soil	MLVIWRTECXSPERTPERSNKAITMRQSEFDKINVAFDRAEYALEELRKKAVELRLKRDLAKTPQENAALNLDAAELLQQLRKIGDAVHTGNPAPHLRLVPDGE*
JGIcombinedJ51221_100447864	3300003505	Forest Soil	MPNVCVGVAGEPMRCAAITTTGAAMRQSEFDKLSSALDGAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE*
Ga0062389_1006145271	3300004092	Bog Forest Soil	MRQSEFDKISAALDRAEFALKELRKKEVELLRKRELAKSMEEIAALNLDATELLQQLRKIGEAVHAGNPAPHLRLISDKE*
Ga0062389_1038520732	3300004092	Bog Forest Soil	MRQSKFDKINATLDRAEFALEQLQKKVDKARRKRSSARTPDAIVALDLEATQLLRQLRKIRDAVHTGSPAPHLRLVSDTE*
Ga0070761_104852371	3300005591	Soil	MLESEFDRIITALGRAEFAVKELQRQATELYRKSAAAKTLQEISAVNLEAAELLQKITKISTAVHTGNPAPHLRLVPDIE*
Ga0070762_105207281	3300005602	Soil	MRESEFDQINAALDRAEFAIREMRKKVDGLHRKAPLAKTLEEMVALKLEAAELLKQLRKVADAVHSGNSTPHLRLVPDSE*
Ga0075014_1001313113	3300006174	Watersheds	MRQSKFDKINAALDRAEFALEQLQKKVERARRKRASARTPEAIVPLDLEAAELLQELRKIRDAVHTGNPAPHLRLVQ*
Ga0075014_1004701901	3300006174	Watersheds	VGQTEIDKISAALDRAEFALEQLRKKVDEVHRKRASAKKPEEIEALNLETAELWQQLQKISVAVHTGNLAPHLRLLPDTE*
Ga0070765_1001239433	3300006176	Soil	AMRLSEFDKITAALGRAEFALEELRIRAEDLCRKSRLAKSLEEIAALNLEAAELLQKIVKISTAVHTGNPAPHLRLVSNTE*
Ga0070765_1001299156	3300006176	Soil	MRQSEFDKITAALGRAEFAMEAVRIRADELRRKSALANTMEEIATLNVEAAKLLHDLVKINLAVHTRNPAPHLRLVSDTE*
Ga0070765_1002099853	3300006176	Soil	MRCAAITTTGAAMRQSEFDKLSSALDGAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE*
Ga0070765_1004344072	3300006176	Soil	MRQSEFNKINATLDRAEFALEQLQKKVDKTRRKRSSARTPDAIVALDLEAAELLQQLRKIRDAVHAGNPAPHLRLVSDTE*
Ga0070765_1007166831	3300006176	Soil	MRQSEFDKINAAFDRAEFALEELRKRAVELHRKRHLAKTLKEIAALKSDAAELLQQLRRVGDAVHTGNPAPHLRLVPDIE*
Ga0070765_1011864442	3300006176	Soil	GPAMQQSEFDKITAALGRAEFAMEELGKRADELKRKSGLAKTMEEIVAVNSEAAKLLQQIAIITAAVHTGNPAPHLRLVSDRE*
Ga0070765_1021885131	3300006176	Soil	MRQSEFDKISAALDRAEFALKELQKMEVALRRKRNAAKTLEEIAALNLEATELLQQLRRISDAVHTGNPAP
Ga0075021_105497851	3300006354	Watersheds	MRQSEFDKISAALDRAEFALEELRKKAVKLHRRRNLAKSPKEIAALNLDAKELLKQMQKISEAVHTGNPAPHLRLVSDTE*
Ga0116221_14690121	3300009523	Peatlands Soil	MRRSEFDKITAALGRAEFALEELQIRAEELRRKTTLAKSPKEIAALNLEAAELLQQIAKISTAVHTGNPAPHLRLVSDTE*
Ga0116225_10702103	3300009524	Peatlands Soil	MRQSEFDKIIAALGRAEFAVEELRNKAIELYRKGAAAKTPEEIAAVNLEAAELLQQIVKISTAVHTGNPAPHLRLVSDTE*
Ga0116106_12178351	3300009645	Peatland	KPKRQSEFDKMNTALDQAEFALEVLRKKAEELQRKRASASTTQEIAVLELEAVELLEELRKISDAVHTRQPVPHLRLVSDKE*
Ga0116217_103870521	3300009700	Peatlands Soil	MRQSEFDKIIAALGRAEFAVEELRNKAIELYRKGAAAKTPEEIAAVNLEAAELLQQIVKISGAVHTGNPAPHLRLVSDTE*
Ga0116223_100143711	3300009839	Peatlands Soil	MYHAKCRADWSNETITMRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEEIAVLNLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE*
Ga0116223_104922191	3300009839	Peatlands Soil	MRQSEFDKINAAFDRAEYALEELRKKAVELHRKRDLAKTLEEIAALNLDAAKLLEQLRKINDAVHTGDPAPHLRLVPDTE*
Ga0116223_105108841	3300009839	Peatlands Soil	MYRARCRHAGWSNKAIAMQQVEFDKIIAALGRAEFAVEELQKKAIELYRKSAAAKTLEEIAAVNLEAAELLQEIVKISTAVHTGNPAPHLRLVSDTE*
Ga0136449_10001806819	3300010379	Peatlands Soil	MRQSECDKIAAALGRAEFALEDLRKRADALHRKAALAKTLEEIAALNLEAAELLQQIVKISGAVHTGNPAPHLRLVSDTE*
Ga0136449_1000180687	3300010379	Peatlands Soil	MRQSEFDKIATALGRAEFALEELRTKAEELCRKSGLAKSLEEIAALNLEAAELLQQIVKISTAVHTGNPAPHLRLVSNTE*
Ga0136449_10002470413	3300010379	Peatlands Soil	MRQSEFDKINAGLDRAEFALGELRKKVDELRRKLASAKTPEETEALNLELIELKQQLREIGKAVHAGSPAPHLRLVSDSE*
Ga0136449_1000350747	3300010379	Peatlands Soil	MRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRRISDAVHTGNPAPHLQLVPE*
Ga0136449_1003738851	3300010379	Peatlands Soil	YRARCRADWSNEAITMRQSEFDKISAALDRAEFALKEVRKKAVELHRRRNLAKSPKEIAALNFDAEELLKQMREISKAVHTGNPAPHLRLVPDKE*
Ga0136449_1007234493	3300010379	Peatlands Soil	MRQSEFDKISAALDRAEFALKELRKKEVELHRKRDLAKSMEEIAVLNLDATELLQQLRKIGEAVHTGNPAPHLRLVSDAE*
Ga0136449_1025970201	3300010379	Peatlands Soil	MRPSDFDRIITALGRAEFAVGELQNKAIVLCRKGAAAKTMEEIASVNLEAAELLQQIAKISAAVHTGDPAPHLRLVPDIE*
Ga0181518_100165073	3300014156	Bog	MRQSEFDKITAALSRAEFAVEELRKRAGELQRKSTVAKSLEEIASLNLEAAELLQQIVKVSTAVHTGNQAPHLRLVSDTE*
Ga0181521_101062984	3300014158	Bog	MARAKPKRQSEFDKMNTALDQAEFALEVLRKKAEELQRKRASASTTQEIAVLDLEAVELLEELRKISDAVHTRQPVPHLRLVSDKE*
Ga0181521_102821302	3300014158	Bog	MRQSEFDKITTALGRAEFALEAVRIRTEELRRKSDLAKTMEEIAALHLEAAEILQQLQKIHAAVHTGDPAPHL
Ga0181530_100042006	3300014159	Bog	MYHAKCRADWSNETITMRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEAIAVLNLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE*
Ga0181530_100512512	3300014159	Bog	MRDSEFDKINAAFDRAEFALEELRKKVVELHRKRDLAKTPEQIATLNLDAAELLQQLRKISDAVHTGNPAPHLRLVPA*
Ga0181538_101068862	3300014162	Bog	MRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRKISDAVHTGNPAPHLRMVPDTE*
Ga0181538_102938412	3300014162	Bog	MQQAEFDKIIAALGRAEFAVEELQKKAIELYRKSAAAKTLEEIAAVNLEAAELLQEIVKISTAVHTGNPAPHLRLVSDTE*
Ga0181532_100174727	3300014164	Bog	MYRARCRADWSNEAITMRQSEFDKITAALSRAEFAVEELRKRAGELQRKSTVAKSLEEIASLNLEAAELLQQIVKVSTAVHTGNQAPHLRLVSDTE*
Ga0181532_101046252	3300014164	Bog	RADWSNETITMRQSEFDEINAALGRAEFALEELRKMADELQRKSAVAKSPEEIAVLKLEAAELLQQIAKLSTAVHTGNPAPHLRLVFDAE*
Ga0181523_101071791	3300014165	Bog	PMYRARCRHAGWSNKAIAMQQVEFDKIIAALGRAEFAVEELQKKAIELYRKSAAAKTLEEIAAVNLEAAELLQEIVKISTAVHTGNPAPHLRLVSDTE*
Ga0182018_100005763	3300014489	Palsa	MRQPEFDKINVALDRAEFALEELRKKASELCRKLASVKTPEETEALNRESIELKQQLRKIGEAVHAGSSAPHLRLVSDAE*
Ga0182018_100309474	3300014489	Palsa	MRQSEFDKINAALDRAEFALEVLQKKASELCRKLASAKTPEESETLNLESIELKQQLRKIREAVHAASPAPHLRLVSDSE*
Ga0182018_106294581	3300014489	Palsa	EFDKISAALDRAKFALKEVRKKAVELHHRRNLAKSPKEIAALNFDAEELLKQMREISKAVHTGNPAPHLRLVSDTD*
Ga0182015_1000615913	3300014495	Palsa	MRQPEFDKINVALDRAEFALEELRKKASELCRKLASVKTAEETEALNRESIELKQQLRKIGEAVHAGSSAPHLRLVSDAE*
Ga0182024_1001316817	3300014501	Permafrost	MQQPEFDKITAALGRAEFAMEEVRKRAGELRRKSALAKTMEEIAALNLDAAELLQQLVKISVAVHTGNPAPHLRLVPDIE*
Ga0182024_1001527423	3300014501	Permafrost	MRESEFDKINAALDRAKFALEELRKKAVELRLKRGSAMTLEEVAAWNLEAAELKQQLRKISEAVHAGNPAPHLRLVPDIE*
Ga0182024_106691514	3300014501	Permafrost	MRLSKFDKTNAALDRAEFALQQLQKKVDEARRKRASARTPDAIVALDFEAAELLQQLRKISDAVHTGNPASHLRLVPDVE*
Ga0182024_106719761	3300014501	Permafrost	LRQSEFDKITAALGRAEFAIEECRKRADELRRKSALAKTIEEIAALNLEAAELLQQLVKINTAVHTGNPAPHL
Ga0182024_121692802	3300014501	Permafrost	LLSPSDRAAPGCLVKARFVLITARGAAMRQSEFDKITAALGRAEFAMEEVRTRADELRRKSNLAKSLEEIAALNLEAAEVLQQLVKISVAVHTGNPAPHLRLVSDSE*
Ga0181536_100817571	3300014638	Bog	RCRHAGWSNKAIAMQQVEFDKIIAALGRAEFAVEELQKKAIELYRKSAAAKTLEEIAAVNLEAAELLQEIVKISTAVHTGNPAPHLRLVSDTE*
Ga0181511_14738462	3300016702	Peatland	MYRARCRAVWSNRAITMRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRKISDAVHTGNPAPHLRMVPDTE
Ga0181505_109211702	3300016750	Peatland	MRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRRISDAVHNGNPAPHLQLVPE
Ga0187879_100463221	3300017946	Peatland	MRQSEFDKIIAALGRAEFAVEELRNKAIELYRKGAAAKTPEEIAAVNLEAAELLQQIVKISTAVHTGNPAPHLRLVSDTE
Ga0187879_108029131	3300017946	Peatland	TMRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKNLEEIATLNLDAAELLQQLRKISDAVHTGNPAPHLRMVPDTE
Ga0187882_14099711	3300018021	Peatland	MYHAKCRADWSNETITMRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEEIAVLKLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE
Ga0187883_101431372	3300018037	Peatland	MYHAKCRADWSNETITMRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEEIAVLNLEATELLQQIVKLSTAIHTGNPAPHLRLVSDAE
Ga0187862_102261482	3300018040	Peatland	MYRARCRAVWSNKATTMRDSEFDKINAAFDRAEFALEELRKKVVELHRKRDLAKTPEQIATLNLDAAELLQQLRKISDAVHTGNPAPHLRMVPDTE
Ga0187890_100029052	3300018044	Peatland	MRQSEFDEINAALGRAEFALEELRKMADELQRKSAVAKSPEEIAVLELEAAELLQQIAKLSTAVHTGNPAPHLRLVFDAE
Ga0187890_106090161	3300018044	Peatland	TRSPTHCDIGQFRACGAHTVTTQGPMYRARCRAVWSNRAITMRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRKISDAVHTGNPAPHLRMVPDT
Ga0193751_10296202	3300019888	Soil	MRQSEFDQINAGLDRAEFAIEELRKKAVDLRRKRDLAKTREEIAALNLDAAGLKRQLRKIGDAVHTGNPAPHLRLVSDIE
Ga0210399_102669362	3300020581	Soil	MRQSEFDKLSAALDRAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0210395_1000097219	3300020582	Soil	MRCAAITTTGAAMRQSEFDKLSSALDGAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0210396_104717761	3300021180	Soil	MRQSEFDKLSSALDGAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0210393_101651275	3300021401	Soil	MQQSEFDKMTTALGRAEFAMEAVRIRADELRRKSALANTMEEIATLNAEAAELLHDLVKINLAVHTRNPAPHLRLVSDTE
Ga0210385_101773341	3300021402	Soil	MRQSEFDKLSAALDRAEFAMEELRKKLDELYRKRDLAKTPEEISALNLDADDLLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0210385_102328463	3300021402	Soil	MRQSEFDKINAALDRAEFALEGLRKKAVEMQRKRALAKTLEEIAALNSDAAELLQQLRQISDAVHASNPAPHIRLVPDIE
Ga0210389_108605302	3300021404	Soil	MRQSEFNKINATLDRAEFALEQLQKKVDKTRRKRSSARTPDAIVALDLEAAELLQQLRKIRDAVHAGSPAPHLRLASDTE
Ga0210387_103424663	3300021405	Soil	MRQSEFNKINATLDRAEFALEQLQKKVDKTRRKRSSARTPDAIVALDLEAAELLQQLRKIRDAVHAGNPAPHLRLVSDTE
Ga0210387_110121971	3300021405	Soil	MRQSEFDKISAALDRAEFALRELRKKEVQLHRKRYLAKSMEEIEALNLEAGDLLLALRKINDAVHPGNPAPHLRLVPDTEHEAFMD
Ga0210386_111869261	3300021406	Soil	MPNVCVGVAVEPMRCAAITTTGAVMRQSEFDKLSAALDRAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0210383_105783851	3300021407	Soil	MRQSEFDKINAALDRAEFALEGLRKKAVEMQRKRALAKTLEEIAALNSDAAELLQQLRQISDAVHASNPAPHLRLVPDIE
Ga0210383_116253351	3300021407	Soil	MRQSEFNKINATLDRAEFALEQLQKKVDKTRRKRSSARTPDAIVALDLEAAELLQQLRKIRDAVHAGSP
Ga0210394_100200447	3300021420	Soil	MRQSKFDKINAAFDRAEFALEQLHKNVEEARRKRAAARTPDAIVALDLEAADLLQQLRKISDAVHTGNPAPHLRLVSDIE
Ga0210394_105778312	3300021420	Soil	ITAATRHSEFDKINSALDRAEFALEKLRKKVVALHRTRDLASTPEEIAALNLEATEVLQQLRKISDAVSGPSIRLVPDIE
Ga0210394_108323091	3300021420	Soil	MRQSEFDKINAIFDRAEFALEELRKKSVELHRKRELAKTLEEIATLNLDAAELLQQLRKISEAIHTTNPAPHLRLVPDIE
Ga0210394_115250881	3300021420	Soil	MRQSEFDKLSAALDRAEFAMEELRKKLDELYRERDLAKTPEEISALNLDADDLLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0210390_108160441	3300021474	Soil	MRQSEFDKINAALDRAEFALEGLRKKAVEMQRKRDLAKTLEEIAALNSDAAELLQQLRQISDAVHASNPAPHLRLVPDIE
Ga0210398_1000663912	3300021477	Soil	MRESEFDKIDAAYDRAEFALEELRKKVAELHRKRDLAKTLDEITTLNSEGVELLQQLRKISDAVHTGNPAPHLRLVPDVE
Ga0210398_101016845	3300021477	Soil	MRCAAITTTGAAMRQSEFDKLSSALDGAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDT
Ga0224551_10153822	3300023259	Soil	MRQSEFDKINAALDRAEFALEVLQKKASELCRKLASAKTPEESETLNLESIELKQQLRKIREAVHAASPAPHLRLVSDSE
Ga0224572_10251801	3300024225	Rhizosphere	AAMRQSEFDKLSSALDRAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0228598_11241992	3300024227	Rhizosphere	MRCAAITTTGAAMRQSEFDKLSSALDRAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLV
Ga0208686_10400741	3300025500	Peatland	MYHAKCRADWSNETITMRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEEIAVLNLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE
Ga0209421_10112194	3300027432	Forest Soil	MRPSEFDRINAALDRVEFALEELRKKASELCRKLAAAKTPEEVEALNIEAIELKQQLGKISEAVHAGNPAPHLRLVPDSE
Ga0209007_10527252	3300027652	Forest Soil	MRPSEFDRINAALDRVEFALEELRKKASELCRKLAAAKTPEEVEALNIEAIELKQQLGKISEAVHA
Ga0209274_104314081	3300027853	Soil	MLESEFDRIITALGRAEFAVKELQRQATELYRKSAAAKTLQEISAVNLEAAELLQKITKISTAVHTGNPAPHLRLVPDIE
Ga0209517_102015993	3300027854	Peatlands Soil	MRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRRISDAVHTGNPAPHLQLVPE
Ga0209517_104272471	3300027854	Peatlands Soil	RAEFALEQLRIRVAEADRKRALAKTPEEIVALDLETAELWQQLRQISDAVHTGNPAPHLRLVPDAE
Ga0209517_104401331	3300027854	Peatlands Soil	MRQSEFDKIAAALGCAEFALEELRIKAEELRRKSALAKSLKEIAALNLEAAELLQQIAKISTAVHTGNPAP
Ga0209624_109100582	3300027895	Forest Soil	MRQSEFDKVNAALDRAEFALEELCLKAGELCRKLAAAKAPEEIQALNCEAIRLERQLDKLSEAVHAGRRGPHLRLVSDSD
Ga0209067_109071601	3300027898	Watersheds	MRQSECDKIAAALGRAEFALEDLRKRADELHRKAALAKTLEEIAALNLEAAELLQQIVKISGAVHTGNPAPHLRLVSDTK
Ga0209006_1000478012	3300027908	Forest Soil	MRQSKFNKINATLDRAEFALEQLQKKMDKARRNRSSARTSDGIVALDLEAAELLEQLRKIRDAVHAGSPAPRLRLVSDTE
Ga0209006_101717114	3300027908	Forest Soil	MRQSEFDKINVAFDRAEYALEELRKKAVELRLKRDLAKTPQENAALNLDAAELLQQLRKIGDAVHTGNPAPHLRLVPDGE
Ga0209006_101886402	3300027908	Forest Soil	MRQSEFDKINAAFDRAEFALEELRKRAVELHRKRHLAKTLKEIAALKSDAAEFLQQLRRVGNAVHTGNPAPHLRLVPDIE
Ga0209698_100672082	3300027911	Watersheds	MPYKRSVGQTEIDKISAALDRAEFALEQLRKKVDEVHRKRASAKKPEEIEALNLETAELWQQLQKISVAVHTGNLAPHLRLLPDTE
Ga0308309_100435407	3300028906	Soil	MRLSEFDKITAALGRAEFALEELRIRAEDLCRKSRLAKSLEEIAALNLEAAELLQKIVKISTAVHTGNPAPHLRLVSNTE
Ga0308309_101948332	3300028906	Soil	MRQSEFDKINAAFDRAEFALEELRKRAVELHRKRHLAKTLKEIAALKSDAAELLQQLRRVGDAVHTGNPAPHLRLVPDIE
Ga0308309_103448321	3300028906	Soil	AAAMRQSEFDKITAALGRAEFAMEAVRIRADELRRKSALANTMEEIATLNAEAAELLHDLVKINLAVHTRNPAPHLRLVSDTE
Ga0308309_109845381	3300028906	Soil	MSAALDLPPRGVRPGNSNGRAMRQSEFDKITAALDRAEFVLEGLQKRAAALHRKAALAKSLDEIAALNLEAAELLQQLAKVSTAVHTGNPAPHLRLVSDTE
Ga0308309_113388401	3300028906	Soil	MRKSEFDKINAAFDRAEFALEELRKKVVELHRKRDLAKTLEEIATLNFDAAELLQQLRKISNAVHTGNPAPHLRLVPDVE
Ga0308309_115776812	3300028906	Soil	FEGRFVLITGTGPAMQQSEFDKITAALGRAEFAMEELGKRADELKRKSGLAKTMEEIVAVNSEAAKLLQQIAIITAAVHTGNPAPHLRLVSDRE
Ga0310039_102013481	3300030706	Peatlands Soil	MRQSEFDEINAALGRAEFALEELRKRADELQLRSTVAKSLEEIAVLNLEATELLQQIVKLSTAVHTGNPAPHLRLVSDAE
Ga0265746_10426161	3300030815	Soil	FDKINVAFDRAEYALEELRKKAVELRRKRDLAKTLEEIAALNLDAAELLQQLRKIGDAVHTGNPAPHLQLVPDTE
Ga0265760_100006861	3300031090	Soil	QMRQSEFDKINAALDRAEFALEGLRKKAVEMQRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0310686_1161313456	3300031708	Soil	MRRNHDNGAAMRQSEFDKLSSALDRAEFAMEELRKKLDELHRKRDLAKTLEEISALNLDADELLQQLRKISDAVHTGNRAPHLRLVSDTE
Ga0311301_100460522	3300032160	Peatlands Soil	MRQSEFDKIATALGRAEFALEELRTKAEELCRKSGLAKSLEEIAALNLEAAELLQQIVKISTAVHTGNPAPHLRLVSNTE
Ga0311301_100878575	3300032160	Peatlands Soil	MYRARCRAVWSNRAITMRDSEFDKINAAFDRAEFALEELRKKAVELHRKRDSAKTLEEIATLNLDAAELLQQLRRISDAVHTGNPAPHLQLVPE
Ga0311301_101643843	3300032160	Peatlands Soil	MRQSECDKIAAALGRAEFALEDLRKRADALHRKAALAKTLEEIAALNLEAAELLQQIVKISGAVHTGNPAPHLRLVSDTE
Ga0311301_102128113	3300032160	Peatlands Soil	MRRSEFDKITAALGRAEFALEELQIRAEELRRKTTLAKSPKEIAALNLEAAELLQQIAKISTAVHTGNPAPHLRLVSDTE
Ga0311301_103182982	3300032160	Peatlands Soil	MRQSEFDKINAGLDRAEFALGELRKKVDELRRKLASAKTPEETEALNLELIELKQQLREIGKAVHAGSPAPHLRLVSDSE
Ga0311301_106262022	3300032160	Peatlands Soil	MRQSEFDKISAALDRAEFALKEVRKKAVELHRRRNLAKSPKEIAALNFDAEELLKQMREISKAVHTGNPAPHLRLVPDKE
Ga0311301_113525091	3300032160	Peatlands Soil	MYRARCRHAGWSNKAIAMQQVEFDKIIAALGRAEFAVEELQKKAIELYRKSAAAKTLEEIAAVNLEAAELLQEIVKISTAVHTGNPAPHLRLVSDTE
Ga0311301_126612631	3300032160	Peatlands Soil	MRQSEFDKITAALSRAEFAVEELRKRAGELQRKSTVAKSLEEIASLNLEAAELLQQIVKVSTAVHTGNQAPHLRLVSDTE
Ga0311301_127656751	3300032160	Peatlands Soil	MRQSEFDKINAAFDRAEYALEELRKKAVELHRKRDLAKTLEEIAALNLDAAKLLEQLRKINDAVHTGDPAPHLRLVPDTE
Ga0335079_104996922	3300032783	Soil	MRPSEFDRINAALDRADFALEELRKRASELCRKLAAAKTPEETKALNIEAIELKQQLDKISEAVHAGHPAPHLRLVSDSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079064

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences