Metagenome Family F079076

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079076
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	44 residues
Representative Sequence	ILDERADQALPDKVNGLISKMTVETLNLRPNMLVNVTPEPAR
Number of Associated Samples	95
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.76 %
% of genes near scaffold ends (potentially truncated)	88.79 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.069 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.241 % of family members)
Environment Ontology (ENVO)	Unclassified (34.483 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.586 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.71% β-sheet: 0.00% Coil/Unstructured: 94.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF12867	DinB_2	21.55
PF04879	Molybdop_Fe4S4	12.93
PF12704	MacB_PCD	5.17
PF01418	HTH_6	4.31
PF08240	ADH_N	3.45
PF00384	Molybdopterin	2.59
PF04075	F420H2_quin_red	1.72
PF04542	Sigma70_r2	1.72
PF00248	Aldo_ket_red	1.72
PF07676	PD40	1.72
PF13424	TPR_12	1.72
PF07883	Cupin_2	1.72
PF00582	Usp	0.86
PF13091	PLDc_2	0.86
PF03091	CutA1	0.86
PF00903	Glyoxalase	0.86
PF01546	Peptidase_M20	0.86
PF00486	Trans_reg_C	0.86
PF13620	CarboxypepD_reg	0.86
PF01926	MMR_HSR1	0.86
PF01381	HTH_3	0.86
PF00768	Peptidase_S11	0.86
PF02687	FtsX	0.86
PF00450	Peptidase_S10	0.86
PF07690	MFS_1	0.86
PF00857	Isochorismatase	0.86
PF08530	PepX_C	0.86
PF07394	DUF1501	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	Transcription [K]	4.31
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.72
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.72
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.72
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.72
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.86
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.86
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.86
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG2936	Predicted acyl esterase	General function prediction only [R]	0.86
COG2939	Carboxypeptidase C (cathepsin A)	Amino acid transport and metabolism [E]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.07 %
Unclassified	root	N/A	12.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.07 %
Unclassified	root	N/A	12.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.07 %
Unclassified	root	N/A	12.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.17 %
Unclassified	root	N/A	12.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.17 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.90 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.03 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.86 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.86 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.86 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.03 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.86 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.86 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.86 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.72 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	1.72 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.86 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.86 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.86 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.72 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	1.72 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.86 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.86 %
unclassified Candidatus Solibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.86 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.07 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.72 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	1.72 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.86 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.86 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.86 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.86 %
Nitrospirae bacterium 13_2_20CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105504962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1396	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10141107	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300000789\|JGI1027J11758_12500694	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300000789\|JGI1027J11758_12565150	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1088	Open in IMG/M
3300001431\|F14TB_100704431	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	582	Open in IMG/M
3300004267\|Ga0066396_10103380	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300004480\|Ga0062592_100412267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1080	Open in IMG/M
3300005093\|Ga0062594_102237198	Not Available	592	Open in IMG/M
3300005332\|Ga0066388_101429081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1204	Open in IMG/M
3300005332\|Ga0066388_101460223	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1193	Open in IMG/M
3300005332\|Ga0066388_102640568	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	915	Open in IMG/M
3300005332\|Ga0066388_103691091	Not Available	781	Open in IMG/M
3300005332\|Ga0066388_106941666	Not Available	570	Open in IMG/M
3300005332\|Ga0066388_107857807	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300005602\|Ga0070762_10138023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1448	Open in IMG/M
3300005610\|Ga0070763_10083306	All Organisms → cellular organisms → Bacteria → Acidobacteria	1585	Open in IMG/M
3300005764\|Ga0066903_102910587	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005764\|Ga0066903_107756683	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005841\|Ga0068863_102127158	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300006042\|Ga0075368_10033451	Not Available	2000	Open in IMG/M
3300006173\|Ga0070716_101496187	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006176\|Ga0070765_101032862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300006806\|Ga0079220_10545608	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300006845\|Ga0075421_100067598	All Organisms → cellular organisms → Bacteria	4513	Open in IMG/M
3300006845\|Ga0075421_102721133	Not Available	511	Open in IMG/M
3300006854\|Ga0075425_102380113	Not Available	588	Open in IMG/M
3300006871\|Ga0075434_101837204	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	612	Open in IMG/M
3300006903\|Ga0075426_10010622	All Organisms → cellular organisms → Bacteria	6552	Open in IMG/M
3300006903\|Ga0075426_11469523	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006903\|Ga0075426_11492560	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium 13_2_20CM_2_61_4	514	Open in IMG/M
3300006904\|Ga0075424_101020177	Not Available	882	Open in IMG/M
3300006904\|Ga0075424_102094014	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006918\|Ga0079216_10537043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	784	Open in IMG/M
3300007255\|Ga0099791_10266810	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300009038\|Ga0099829_10224598	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300009089\|Ga0099828_10863361	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300009162\|Ga0075423_10485230	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300009162\|Ga0075423_10963067	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	906	Open in IMG/M
3300009174\|Ga0105241_11687653	All Organisms → cellular organisms → Bacteria → Proteobacteria	615	Open in IMG/M
3300009645\|Ga0116106_1121507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300009792\|Ga0126374_11607933	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300010043\|Ga0126380_11035700	Not Available	694	Open in IMG/M
3300010043\|Ga0126380_11918103	Not Available	539	Open in IMG/M
3300010046\|Ga0126384_12254748	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300010048\|Ga0126373_11838024	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300010359\|Ga0126376_12494909	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300010361\|Ga0126378_13071500	Not Available	532	Open in IMG/M
3300010362\|Ga0126377_10030741	All Organisms → cellular organisms → Bacteria	4537	Open in IMG/M
3300010366\|Ga0126379_10653946	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300010366\|Ga0126379_12870949	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300010366\|Ga0126379_13740360	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300010376\|Ga0126381_101461914	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	988	Open in IMG/M
3300010398\|Ga0126383_11831526	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300010398\|Ga0126383_12025007	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300012180\|Ga0153974_1060175	All Organisms → cellular organisms → Bacteria → Acidobacteria	838	Open in IMG/M
3300012202\|Ga0137363_10279652	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300012203\|Ga0137399_10942256	Not Available	727	Open in IMG/M
3300012212\|Ga0150985_119565206	All Organisms → cellular organisms → Bacteria → Proteobacteria	2365	Open in IMG/M
3300012357\|Ga0137384_10500867	All Organisms → cellular organisms → Bacteria → Acidobacteria	997	Open in IMG/M
3300012582\|Ga0137358_10588453	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300012922\|Ga0137394_10386555	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300012929\|Ga0137404_10377582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1246	Open in IMG/M
3300013296\|Ga0157374_10633062	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300015052\|Ga0137411_1058913	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300015241\|Ga0137418_10524319	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300015242\|Ga0137412_10525752	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300015245\|Ga0137409_10606237	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300015245\|Ga0137409_11315867	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300015374\|Ga0132255_102262078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	829	Open in IMG/M
3300016270\|Ga0182036_10396724	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300016404\|Ga0182037_10221037	All Organisms → cellular organisms → Bacteria → Proteobacteria	1482	Open in IMG/M
3300016422\|Ga0182039_10105718	All Organisms → cellular organisms → Bacteria → Acidobacteria	2090	Open in IMG/M
3300020579\|Ga0210407_10328754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1195	Open in IMG/M
3300020583\|Ga0210401_10001068	All Organisms → cellular organisms → Bacteria	32709	Open in IMG/M
3300020583\|Ga0210401_10445451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1158	Open in IMG/M
3300021088\|Ga0210404_10083193	All Organisms → cellular organisms → Bacteria → Acidobacteria	1581	Open in IMG/M
3300021088\|Ga0210404_10314341	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300021168\|Ga0210406_10214954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1590	Open in IMG/M
3300021171\|Ga0210405_10245965	All Organisms → cellular organisms → Bacteria	1416	Open in IMG/M
3300021178\|Ga0210408_10046699	Not Available	3389	Open in IMG/M
3300021401\|Ga0210393_11369290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300021403\|Ga0210397_10300183	All Organisms → cellular organisms → Bacteria → Acidobacteria	1179	Open in IMG/M
3300021404\|Ga0210389_10583694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300021420\|Ga0210394_10223643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1644	Open in IMG/M
3300021432\|Ga0210384_10034206	All Organisms → cellular organisms → Bacteria	4720	Open in IMG/M
3300021432\|Ga0210384_11098232	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300021559\|Ga0210409_11187649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300021560\|Ga0126371_10162731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	2302	Open in IMG/M
3300025922\|Ga0207646_10498024	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300025933\|Ga0207706_10191040	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300025939\|Ga0207665_10561268	All Organisms → cellular organisms → Bacteria → Acidobacteria	888	Open in IMG/M
3300027667\|Ga0209009_1108517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	705	Open in IMG/M
3300027874\|Ga0209465_10264404	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300028379\|Ga0268266_10137518	All Organisms → cellular organisms → Bacteria	2190	Open in IMG/M
3300031573\|Ga0310915_11256597	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031679\|Ga0318561_10356466	All Organisms → cellular organisms → Bacteria → Acidobacteria	802	Open in IMG/M
3300031718\|Ga0307474_10395751	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300031719\|Ga0306917_11050904	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031720\|Ga0307469_10786205	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300031764\|Ga0318535_10242024	Not Available	807	Open in IMG/M
3300031769\|Ga0318526_10432851	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031781\|Ga0318547_10850428	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031820\|Ga0307473_10010411	All Organisms → cellular organisms → Bacteria	3348	Open in IMG/M
3300031823\|Ga0307478_11812475	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300031954\|Ga0306926_10410568	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300031954\|Ga0306926_11823819	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031962\|Ga0307479_10958246	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300032076\|Ga0306924_11290147	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300032174\|Ga0307470_10016926	All Organisms → cellular organisms → Bacteria	3186	Open in IMG/M
3300032205\|Ga0307472_101358790	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300032261\|Ga0306920_100637876	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300032783\|Ga0335079_10648061	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300032805\|Ga0335078_11221358	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300032828\|Ga0335080_11667806	Not Available	626	Open in IMG/M
3300032892\|Ga0335081_11448157	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
3300032897\|Ga0335071_11980878	Not Available	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.76%
Host-Associated	Host-Associated	17.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.90%
Plants	Host-Associated → Plants	16.38%
Aquatic	Environmental → Aquatic	0.86%
Fungi	Host-Associated → Fungi	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	0.86%
Roots	Host-Associated → Plants → Roots	0.86%
Mycelium	Host-Associated → Fungi → Mycelium	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.07%
Loam	Environmental → Terrestrial → Soil → Loam	15.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.72%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.86%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.03%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.07%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.31%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.86%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.86%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.24%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.07%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.03%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.72%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.86%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1055049621	3300000364	Soil	NLAGILEDRVQQLLPEKVKSSIAKVTVETLNLRPNMLVNVTPEPTR*
AF_2010_repII_A1DRAFT_101411071	3300000597	Forest Soil	PRASLANILDERAEQLLPDKVNSLVSKMTVETLNLRPNMLVNVTPEPAP*
JGI1027J11758_125006941	3300000789	Soil	RADQALPDKVNSFISKITVETINLRPNMLVNVTPEPAR*
JGI1027J11758_125651504	3300000789	Soil	ALPEKVNCFVSKITVETLNLRPNMLVNVTPEPAR*
F14TB_1007044312	3300001431	Soil	ERADQALPDKVNGLVSKITFEALNLRPNMLVNVTPEPTR*
Ga0066396_101033802	3300004267	Tropical Forest Soil	ILDERADQELPEEVNGLISKVSVEILNLRPNMLVNVTPEPAH*
Ga0062592_1004122672	3300004480	Soil	MAPALLRRRLRPSPNLAAILDERADQALPAKLNGVIVKWSVETLTLRPTMLVNVTPAGSR
Ga0062594_1022371982	3300005093	Soil	RRLRPSPNLAAILDERADQALPAKLNGVIVKWSVETLTLRPTMLVNVTPAGSR*
Ga0066388_1014290813	3300005332	Tropical Forest Soil	AILEERADQPLPEKVNGLISKMTVETLNLRTDMLVNVTPEPAR*
Ga0066388_1014602231	3300005332	Tropical Forest Soil	AILDERGEQALPEKVNGLVAKMTVETLNLRPNMLVNVTAEPNR*
Ga0066388_1026405682	3300005332	Tropical Forest Soil	ALILDERADQALPDKVIGLISTIKTEALNLRPDFLVNVTPLVAH*
Ga0066388_1036910912	3300005332	Tropical Forest Soil	ALILDERADQALPDKVIGLISTIKTEALNLRPDFLVNVTPEAPH*
Ga0066388_1069416661	3300005332	Tropical Forest Soil	RASLAAILDERTGQALPAKADGLISKMTVETLNLRPDMLVNVTPAP*
Ga0066388_1078578071	3300005332	Tropical Forest Soil	RASLTNILDERADQQLPDKVNGLISKLTVETLNLRPNMLVNVTPDTTH*
Ga0070762_101380231	3300005602	Soil	LRASRMVLVGKLSMRASLANILDERADQELPENVHNLILKMTVETLNLRPNMLVNITPEPER*
Ga0070763_100833061	3300005610	Soil	MRASLANILDERADQELPENVHNLILKMTVETLNLRPNMLVNITPEPER*
Ga0066903_1029105872	3300005764	Tropical Forest Soil	RPLSSLQAVLDERGDQALPDKVSGLISKISVETLNLRPSMLVNVTPEAPY*
Ga0066903_1077566831	3300005764	Tropical Forest Soil	ADQALPEKVNGFISKMSVEVLNLRPNMLVNVTPEPAR*
Ga0068863_1021271581	3300005841	Switchgrass Rhizosphere	RLRPRTSLASILDEHADQALPDKVNGLISKMTVETLNLRPNMLVNVTPTR*
Ga0075368_100334512	3300006042	Populus Endosphere	ASLAAILDERARQALPDKVNGLVSTITFETLNLRPTMLVNVTPAPTR*
Ga0070716_1014961871	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	PRASLASILDERADQALPDKVNGLISKMTVETLNLRPNMLVNVTPESPR*
Ga0070765_1010328622	3300006176	Soil	SLASILDERADQSLPDQVKGLIAMMTIETLNLRTNMLVNVTPEPAH*
Ga0079220_105456082	3300006806	Agricultural Soil	MLDERAEQALRNQLNGLVAKISGETLNLRPNMLVNLAPLTEP*
Ga0075421_1000675981	3300006845	Populus Rhizosphere	YVRLRPRSSLALILDERADQALPDKVIGLISTIKNEALNLRPDFLVNVTPVVAH*
Ga0075421_1027211332	3300006845	Populus Rhizosphere	AAILDERADQALPDRVNSLISKVTIETLNLRPNMLVNVTPVPAR*
Ga0075425_1023801132	3300006854	Populus Rhizosphere	AAILDERADQALPDSVNGLISKMTVETLNLRPDMLVNVTPEPAR*
Ga0075434_1018372042	3300006871	Populus Rhizosphere	LDEHADQALPDKVNGLISKMTVETLNLRPNMLVNVTPTR*
Ga0075426_100106221	3300006903	Populus Rhizosphere	AAILDERADQALPDSVNASIAKMTVESLNLRPDMLVNVTPEGAR*
Ga0075426_114695232	3300006903	Populus Rhizosphere	LRPRATLAAILDERADQALPDAVDSLIAKITVETLNLRPNMLVNVTMP*
Ga0075426_114925601	3300006903	Populus Rhizosphere	PRASLAAILDERADQALPDKVTGLISKVTVETLNLRPNMLVNVTPE*
Ga0075424_1010201772	3300006904	Populus Rhizosphere	PRASLAAILDERADQALPDKVNHLIAKVTVETLNLRANMLVNVTPETR*
Ga0075424_1020940142	3300006904	Populus Rhizosphere	LRPRADLAAILDERADQALPDRVNSLISKVTIETLNLRPNMLVNVTPVPAR*
Ga0079216_105370433	3300006918	Agricultural Soil	ILDERGDQALPDTVNGLIVKMIVETLNLRPNMLVNVTPSGQK*
Ga0099791_102668102	3300007255	Vadose Zone Soil	ERADQAVPDKVNGLISKMTIETLNLRPDMLVNVTPEPAR*
Ga0099829_102245983	3300009038	Vadose Zone Soil	AILDERADQALPDKVNGLISKMTVETLNLRPNMLVNVTPEPAR*
Ga0099828_108633611	3300009089	Vadose Zone Soil	ILDERADQALPDKVNGLISKMTVETLNLRPNMLVNVTPEPAR*
Ga0075423_104852302	3300009162	Populus Rhizosphere	LRPRADLAAILDERADQALPDRVNSLISKVTIETLNLRPNMLVNVTPAPAR*
Ga0075423_109630672	3300009162	Populus Rhizosphere	LASILDEHADQALPDKVNGLISKMTVETLNLRPNMLVNVTPTR*
Ga0105241_116876531	3300009174	Corn Rhizosphere	LDDPADRALPEGVTNLVSRITVETLNLRPTMLVNVTPVSSPR*
Ga0116106_11215072	3300009645	Peatland	ILDERADQALPDKVNGLISKMTVETLNLRPDMLVNVTPVKEP*
Ga0126374_116079331	3300009792	Tropical Forest Soil	MASLTAILEERADGDLPETVNGLISKVTVETLNLRPNMLVNVTPETQH*
Ga0126380_110357001	3300010043	Tropical Forest Soil	SLAAILEQRPDEALPETVNGLISKMTIETLNLRPNMLVNVTPEPTQ*
Ga0126380_119181031	3300010043	Tropical Forest Soil	SPRATLASILDERADQARAEKVNGLMSKMTVEALKGRPNMLVNVTPQSAP*
Ga0126384_122547482	3300010046	Tropical Forest Soil	GSLANILDERADQPLPEKLNSLISKLTVETLNLRPNMLVNVTPATSQ*
Ga0126373_118380241	3300010048	Tropical Forest Soil	DQALPDKVNALVSKMTVEILNLRPNMLVNLTPEPAR*
Ga0126376_124949091	3300010359	Tropical Forest Soil	ASLANILDERADQALPDKVNGLISKMTVEILNLRTNMLVNVTPEVAH*
Ga0126378_130715001	3300010361	Tropical Forest Soil	LRPRSNLGVILEERADQALPEKVNELISRTMTEILNLRPNMLVNVTPAP*
Ga0126377_100307416	3300010362	Tropical Forest Soil	RADQALPDKVIGLISTIKTEALNLRPDFSVNVTPVVAH*
Ga0126379_106539462	3300010366	Tropical Forest Soil	AAILEEHADQTLPDKVNGLISKMTVETLNLRPNMLVNVTPEPAH*
Ga0126379_128709491	3300010366	Tropical Forest Soil	SILDERADQTLPDKVNGLIAKITVEILNLRPNMLVNVTPEPAP*
Ga0126379_137403602	3300010366	Tropical Forest Soil	ALPERVNGLVSRMTVETLNLRPNMLVNVTPKPAP*
Ga0126381_1014619142	3300010376	Tropical Forest Soil	DSAEIALPEKANSLISKMTVEVLSLRPTMLVNVTPEPAK*
Ga0126383_118315262	3300010398	Tropical Forest Soil	TLPDKVNGLISKMTVETLNLRPNMLVNVTPEAGH*
Ga0126383_120250072	3300010398	Tropical Forest Soil	RASLAAILDEHADQALPDKVNGLVSKMTVETLNLRTNMLVNVTPEPGH*
Ga0153974_10601751	3300012180	Attine Ant Fungus Gardens	SLAAILDERADQALPDKVNGLISKMTVETLNLRPNMLVNVTPEPARQ*
Ga0137363_102796521	3300012202	Vadose Zone Soil	ERIDRSLPDKIKGLIAKVTVETLNLRTNMLVNVTPEPAR*
Ga0137399_109422563	3300012203	Vadose Zone Soil	AILDERGEQALPDKANGMISKMTVETLNLRPDMLVNVTPEPAR*
Ga0150985_1195652063	3300012212	Avena Fatua Rhizosphere	MLPEKVRPGKSKMTVETLNLRPDMLVNVTAEPAR*
Ga0137384_105008671	3300012357	Vadose Zone Soil	GILDESADQSLPDKVNGLIAKMTVETLNLRTNMLVNVTPEPAR*
Ga0137358_105884532	3300012582	Vadose Zone Soil	ALPDKVNGSISKMTVETLNLRPNMLVNVTPEPAR*
Ga0137394_103865553	3300012922	Vadose Zone Soil	ADQALPDKVNGSISKMTIETLNLRPNMLVNVTPEPAR*
Ga0137404_103775822	3300012929	Vadose Zone Soil	RPRTSLAAILDERADQSLPDKVNGLIAKMTVETLNLRTNMLVNVTPEPAR*
Ga0157374_106330623	3300013296	Miscanthus Rhizosphere	SILDERAEQALPDQVNGLVAKISVETLNLRPNMLVNLTPLTEP*
Ga0137411_10589131	3300015052	Vadose Zone Soil	RPRANLAAILDERADQALPDKVNVSISKMTIETLNLRPNMLVNVTPEPAR*
Ga0137418_105243191	3300015241	Vadose Zone Soil	VCLRPRTSLEGILDERADRSLPDKVNGLIAKVTVETLNLRTNMLVNVTPEPAR*
Ga0137412_105257521	3300015242	Vadose Zone Soil	RLRPRTSLAGILDERADQSLPDKVNGLIAKMTVETLNLRTNMLLNVTPEPAR*
Ga0137409_106062372	3300015245	Vadose Zone Soil	AAILDERADQALPDKVNGLISKISVETLNLRPNMLVNVTPEPAH*
Ga0137409_113158672	3300015245	Vadose Zone Soil	QALPETVNNLISKITIETLNLRPNMLVNVTPEHAH*
Ga0132255_1022620781	3300015374	Arabidopsis Rhizosphere	SLADILDERADQALPEKVNCFVSKITVETLNLRPNMLVNVTPEPAR*
Ga0182036_103967242	3300016270	Soil	DQTLPDKVNGLISKLTVETLNLRPNMLVNVIPAGR
Ga0182037_102210371	3300016404	Soil	SLQAILDERADQALPDKVSGLISKISVEILNLRPSMLVSLTPEAPH
Ga0182039_101057184	3300016422	Soil	SSLQAILDERADQALPDKVSGLISKISVEILNLRPSMLVSLTPEAPH
Ga0210407_103287543	3300020579	Soil	QALPDKVNGLISKMTVETVNLRPNMLVNVTPVKEP
Ga0210401_1000106820	3300020583	Soil	MVLVGKLSMRASLANILDERADQELPENVHTLILKMTVETLNLWPNMLVNVTPEPER
Ga0210401_104454511	3300020583	Soil	ADQALPDKVSGLISKMTVETLNLRPNMLVNVTPEAAR
Ga0210404_100831932	3300021088	Soil	MRASLANILDERADQELPENVHNLILKMTVETLNLWPNMLVNVTPEPER
Ga0210404_103143413	3300021088	Soil	VSLANILDERADQSLPDKVNGLISKMTVETLNLRPNMLVNVTPEPPR
Ga0210406_102149543	3300021168	Soil	SLASILDEHADQALPDKVNGLISKMTVETVNLRPNMLVNVTPVKEP
Ga0210405_102459652	3300021171	Soil	MRASLANILDERADQELPENVHNLILKMTVETLNLRPNMLVNITPEPER
Ga0210408_100466996	3300021178	Soil	ADQALPEKVNGLTTKMTVETLNLRPNMLVNVTPEPAH
Ga0210393_113692902	3300021401	Soil	LRPRPSLASILDERADQSLPDQVKGLIAKMTVETLNLRTNMLVNVTPEPAH
Ga0210397_103001832	3300021403	Soil	MRASLANILDERADQELPENVHNLILKMTVETLNLRPNMLVNVTPGPER
Ga0210389_105836942	3300021404	Soil	LRPRASLANILDERADQELPKKVHGLILKMTVETLNLRPNMLVNVTPEPER
Ga0210394_102236431	3300021420	Soil	ERADQSLPDQVKGLIAKMTVETLNLRTNMLVNVTPEPAH
Ga0210384_100342064	3300021432	Soil	MVFVGKLSMRASLANILDERADQELPENVHNLILKMTVETLNLRPNMLVNITPEPER
Ga0210384_110982321	3300021432	Soil	SARKLGDEPAGQALPDKVNGLISKMTVESLNLRPNMLVNVTPEPAR
Ga0210409_111876491	3300021559	Soil	QALPDKVSGLISKMTVETLNLRPNMLVNVTPEAAR
Ga0126371_101627312	3300021560	Tropical Forest Soil	DQAFPNKVSGLISKITVETLNLRPNMLVNVTPEHGR
Ga0207646_104980241	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	ASILDERADQALPDKVNGLISKMTVETLNLRSNMLVSVTPEPAR
Ga0207706_101910403	3300025933	Corn Rhizosphere	ERAEQALPDQVNGLVAKISVETLNLRPNMLVNVTPLTEP
Ga0207665_105612682	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LANILDERADQALPDRVNGLISKMTVETLNLRPNMLVNVTPEPAR
Ga0209009_11085171	3300027667	Forest Soil	LRPRENLAAILDERADQALPGKVNRLISKMTVGTLNLGPNMLVNVTPEPARQ
Ga0209465_102644041	3300027874	Tropical Forest Soil	PRATLASILDEHADQVLPDKVSGLISRMTIETLNLRPNMLVNVTPVPGL
Ga0268266_101375181	3300028379	Switchgrass Rhizosphere	DQALPDSVNGLISKMTVETLNLRPNMLVNVAPEPAR
Ga0310915_112565971	3300031573	Soil	LRPRESLAAILEQSADQTLPDKVDGLISKITIETLNLRPNMLVNVTPERGR
Ga0318561_103564661	3300031679	Soil	SILDEHADQVLPDKVSGLISRMTIETLNLRPNMLVNVTPVPGL
Ga0307474_103957513	3300031718	Hardwood Forest Soil	LVAILDERAGQALPEKVNGLISKMTVETLNLRPNMLVNVTPETAR
Ga0306917_110509041	3300031719	Soil	QTLPDKVDGLISKITIETLNLRPNMLVNVTLERGR
Ga0307469_107862051	3300031720	Hardwood Forest Soil	ADQALPDKVNGLISKMTIETLNLRPNMLVNVTPEPAR
Ga0318535_102420241	3300031764	Soil	QALPDSVSDLISKITVETLSLRPDMLVNVTPEAAR
Ga0318526_104328512	3300031769	Soil	ILDERADQALPDKVNGLISKMTVETLNLRSNMLVNVTPEPAP
Ga0318547_108504281	3300031781	Soil	ILDERADQPLPERINGLISRMTVESLNLRPDMLVNVTPVPAR
Ga0307473_100104115	3300031820	Hardwood Forest Soil	CPRASLAAILDERASQALPDKVNGLISKMTVETLNLRPNMLVNVTAEPAR
Ga0307478_118124751	3300031823	Hardwood Forest Soil	ASLAPILDERADQSLPDKVNGLISKVTVETLNLRPNMLVNVTPEPAR
Ga0306926_104105681	3300031954	Soil	ADQALPDKVSGLISKISVEILNLRPSMLVSLTPEAPH
Ga0306926_118238191	3300031954	Soil	PRASLATILDERADQGLPEKVTGLVSTMTVETLNLRPTMLVNVTPKPTP
Ga0307479_109582462	3300031962	Hardwood Forest Soil	TSLASILDERADQALPDKVNGLISKMNVETLNLRPNMLVNVTPEPAR
Ga0306924_112901472	3300032076	Soil	VRLKPRSSLGAILDENADQALPDDVNGLISKLTVETLNLRPNMLVNVIPAGR
Ga0307470_100169261	3300032174	Hardwood Forest Soil	SLAAILDERSGQELPDNVNGLISKMTVETLNLRPNMLVNVTPEPAR
Ga0307472_1013587902	3300032205	Hardwood Forest Soil	ERAEQELPDTANGLIAKTTVETLSLRPNMLVNVTPE
Ga0306920_1006378763	3300032261	Soil	ANLGVILEERADQALPEKVNELISRTTTEILNLRPNMLVNVTPAP
Ga0335079_106480611	3300032783	Soil	TSLAAILEEAADQPLPGTVYGLVLKVSVETLNLRTNMLVNVNPATEP
Ga0335078_112213581	3300032805	Soil	LRPRPSLAAILDEHSEQAVPEKVNGLVSKVTIETLNLRVNMLVNVTPELMR
Ga0335080_116678062	3300032828	Soil	LDERSDQALPAMVDGLISKMTVETLNLRPDMLVNVTPAP
Ga0335081_114481571	3300032892	Soil	RVDQALPDKVNGLISKMTVEVLVLRPNMLVNVTPEPQR
Ga0335071_119808782	3300032897	Soil	DERSDQALPAKVDGLISKMTVETLNLRPDMLVNVMPEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079076

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences