Metagenome / Metatranscriptome Family F079092

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079092
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	69 residues
Representative Sequence	MTLKSAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKTQS
Number of Associated Samples	94
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.52 %
% of genes near scaffold ends (potentially truncated)	35.34 %
% of genes from short scaffolds (< 2000 bps)	77.59 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.207 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere (13.793 % of family members)
Environment Ontology (ENVO)	Unclassified (51.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (73.276 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.37% β-sheet: 0.00% Coil/Unstructured: 32.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF11821	ActD	13.79
PF11181	YflT	11.21
PF08281	Sigma70_r4_2	7.76
PF01566	Nramp	6.03
PF12704	MacB_PCD	4.31
PF02687	FtsX	3.45
PF02163	Peptidase_M50	2.59
PF01145	Band_7	2.59
PF03332	PMM	2.59
PF00903	Glyoxalase	2.59
PF04203	Sortase	1.72
PF02504	FA_synthesis	0.86
PF00873	ACR_tran	0.86
PF14417	MEDS	0.86
PF00990	GGDEF	0.86
PF00224	PK	0.86
PF00589	Phage_integrase	0.86
PF03949	Malic_M	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	6.03
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	2.59
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	1.72
COG0281	Malic enzyme	Energy production and conversion [C]	0.86
COG0416	Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis)	Lipid transport and metabolism [I]	0.86
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.86
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.21 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	27.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.97 %
Unclassified	root	N/A	13.79 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	13.79 %
Unclassified	root	N/A	13.79 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.93 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	3.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	13.79 %
Unclassified	root	N/A	13.79 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.76 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.45 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.72 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Syntrophorhabdales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales	13.79 %
Unclassified	root	N/A	13.79 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.76 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.45 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.86 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.86 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Syntrophorhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae	13.79 %
Unclassified	root	N/A	13.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.45 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.72 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.86 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.86 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
unclassified Syntrophorhabdaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae	13.79 %
Unclassified	root	N/A	13.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.45 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.72 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.86 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.86 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Name	Rank	Taxonomy	Distribution
Syntrophorhabdaceae bacterium PtaU1.Bin034	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	13.79 %
Unclassified	root	N/A	13.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3.45 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.72 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.86 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.86 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004463\|Ga0063356_103088170	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300004799\|Ga0058863_10019519	All Organisms → cellular organisms → Bacteria	1326	Open in IMG/M
3300004803\|Ga0058862_10209803	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005329\|Ga0070683_100024402	All Organisms → cellular organisms → Bacteria	5416	Open in IMG/M
3300005329\|Ga0070683_100036963	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4469	Open in IMG/M
3300005329\|Ga0070683_101038179	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	787	Open in IMG/M
3300005338\|Ga0068868_100584648	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300005340\|Ga0070689_100313758	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300005343\|Ga0070687_100516238	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005356\|Ga0070674_101072682	Not Available	710	Open in IMG/M
3300005434\|Ga0070709_10088300	All Organisms → cellular organisms → Bacteria	2039	Open in IMG/M
3300005434\|Ga0070709_10831718	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	726	Open in IMG/M
3300005434\|Ga0070709_10917688	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300005439\|Ga0070711_101729838	Not Available	548	Open in IMG/M
3300005534\|Ga0070735_10002866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15332	Open in IMG/M
3300005534\|Ga0070735_10953220	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	503	Open in IMG/M
3300005535\|Ga0070684_101506596	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	634	Open in IMG/M
3300005536\|Ga0070697_100078301	All Organisms → cellular organisms → Bacteria	2720	Open in IMG/M
3300005538\|Ga0070731_10861155	Not Available	601	Open in IMG/M
3300005547\|Ga0070693_100244413	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300005563\|Ga0068855_100151152	Not Available	2640	Open in IMG/M
3300005564\|Ga0070664_100877813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	840	Open in IMG/M
3300005577\|Ga0068857_100914211	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300005614\|Ga0068856_100003603	All Organisms → cellular organisms → Bacteria	15588	Open in IMG/M
3300005618\|Ga0068864_102092691	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005842\|Ga0068858_100765048	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	941	Open in IMG/M
3300006059\|Ga0075017_100252152	All Organisms → cellular organisms → Bacteria	1291	Open in IMG/M
3300006173\|Ga0070716_101076049	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300006175\|Ga0070712_102004531	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300006176\|Ga0070765_100073297	All Organisms → cellular organisms → Bacteria	2881	Open in IMG/M
3300006358\|Ga0068871_100058092	All Organisms → cellular organisms → Bacteria	3149	Open in IMG/M
3300006638\|Ga0075522_10000145	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	46335	Open in IMG/M
3300006854\|Ga0075425_101240890	Not Available	846	Open in IMG/M
3300006871\|Ga0075434_102575665	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006893\|Ga0073928_11002027	Not Available	569	Open in IMG/M
3300006903\|Ga0075426_10992981	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300006904\|Ga0075424_100650912	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300009093\|Ga0105240_11760071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	646	Open in IMG/M
3300009098\|Ga0105245_12367485	Not Available	585	Open in IMG/M
3300009098\|Ga0105245_13283403	Not Available	501	Open in IMG/M
3300009100\|Ga0075418_12816849	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	531	Open in IMG/M
3300009148\|Ga0105243_10276143	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300009174\|Ga0105241_11385685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	673	Open in IMG/M
3300009174\|Ga0105241_11466884	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300009177\|Ga0105248_10653006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	1187	Open in IMG/M
3300009177\|Ga0105248_11655603	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	725	Open in IMG/M
3300009545\|Ga0105237_10136741	All Organisms → cellular organisms → Bacteria	2445	Open in IMG/M
3300009545\|Ga0105237_11414459	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300009545\|Ga0105237_11733655	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	632	Open in IMG/M
3300009551\|Ga0105238_11246872	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	769	Open in IMG/M
3300009553\|Ga0105249_10045496	All Organisms → cellular organisms → Bacteria	3992	Open in IMG/M
3300010371\|Ga0134125_10844640	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1007	Open in IMG/M
3300010373\|Ga0134128_10691297	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300010375\|Ga0105239_10192264	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300010375\|Ga0105239_10652665	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1202	Open in IMG/M
3300010379\|Ga0136449_100166834	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4273	Open in IMG/M
3300011119\|Ga0105246_10212018	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300011120\|Ga0150983_13722829	Not Available	535	Open in IMG/M
3300012957\|Ga0164303_11477693	Not Available	512	Open in IMG/M
3300012989\|Ga0164305_10850998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	761	Open in IMG/M
3300013059\|Ga0154012_161931	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300013062\|Ga0154010_166089	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300013105\|Ga0157369_10257168	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300013296\|Ga0157374_10020617	All Organisms → cellular organisms → Bacteria	5853	Open in IMG/M
3300013297\|Ga0157378_11990900	Not Available	631	Open in IMG/M
3300013308\|Ga0157375_11083944	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	937	Open in IMG/M
3300014325\|Ga0163163_11808795	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300014501\|Ga0182024_11013873	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300014969\|Ga0157376_10104869	All Organisms → cellular organisms → Bacteria → Acidobacteria	2478	Open in IMG/M
3300014969\|Ga0157376_11966275	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300017959\|Ga0187779_10280500	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300018482\|Ga0066669_12276206	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300020069\|Ga0197907_10220834	All Organisms → cellular organisms → Bacteria → Acidobacteria	1571	Open in IMG/M
3300020069\|Ga0197907_10320617	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300020069\|Ga0197907_11246455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	934	Open in IMG/M
3300020070\|Ga0206356_11065152	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300020070\|Ga0206356_11699083	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	966	Open in IMG/M
3300020070\|Ga0206356_11715752	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	1146	Open in IMG/M
3300020075\|Ga0206349_1183591	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300020075\|Ga0206349_1673931	All Organisms → cellular organisms → Bacteria → Acidobacteria	1473	Open in IMG/M
3300020077\|Ga0206351_10072934	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300020078\|Ga0206352_10911287	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	1319	Open in IMG/M
3300020078\|Ga0206352_11299290	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300020080\|Ga0206350_11029026	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300020580\|Ga0210403_10489351	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300020610\|Ga0154015_1174425	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300021170\|Ga0210400_10510490	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300021407\|Ga0210383_10442451	Not Available	1122	Open in IMG/M
3300022467\|Ga0224712_10016930	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	2406	Open in IMG/M
3300022724\|Ga0242665_10186140	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300022726\|Ga0242654_10196314	Not Available	699	Open in IMG/M
3300025862\|Ga0209483_1001826	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15645	Open in IMG/M
3300025913\|Ga0207695_10025900	All Organisms → cellular organisms → Bacteria → Acidobacteria	6555	Open in IMG/M
3300025913\|Ga0207695_11576631	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	537	Open in IMG/M
3300025914\|Ga0207671_10343809	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	1182	Open in IMG/M
3300025914\|Ga0207671_10472885	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	999	Open in IMG/M
3300025916\|Ga0207663_11387472	Not Available	566	Open in IMG/M
3300025936\|Ga0207670_11240251	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300025939\|Ga0207665_10983100	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300025944\|Ga0207661_10192625	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300025949\|Ga0207667_10057497	All Organisms → cellular organisms → Bacteria	4082	Open in IMG/M
3300026035\|Ga0207703_11577888	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	631	Open in IMG/M
3300026041\|Ga0207639_10201377	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	1708	Open in IMG/M
3300026088\|Ga0207641_10643584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	1041	Open in IMG/M
3300026095\|Ga0207676_10277407	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1520	Open in IMG/M
3300027986\|Ga0209168_10021928	All Organisms → cellular organisms → Bacteria	3603	Open in IMG/M
3300028800\|Ga0265338_10145235	All Organisms → cellular organisms → Bacteria → Acidobacteria	1852	Open in IMG/M
3300028906\|Ga0308309_10055445	All Organisms → cellular organisms → Bacteria	2881	Open in IMG/M
3300031231\|Ga0170824_116820797	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300031231\|Ga0170824_117088386	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	512	Open in IMG/M
3300031247\|Ga0265340_10280989	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300031595\|Ga0265313_10011607	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5464	Open in IMG/M
3300032160\|Ga0311301_10080867	All Organisms → cellular organisms → Bacteria → Acidobacteria	6663	Open in IMG/M
3300033412\|Ga0310810_10121510	All Organisms → cellular organisms → Bacteria	3080	Open in IMG/M
3300034115\|Ga0364945_0166595	Not Available	665	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.31%
Host-Associated	Host-Associated	45.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.59%
Plants	Host-Associated → Plants	43.97%
Aquatic	Environmental → Aquatic	1.72%
Human	Host-Associated → Human	1.72%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.34%
Digestive System	Host-Associated → Human → Digestive System	1.72%
Roots	Host-Associated → Plants → Roots	1.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.86%
Sediment	Environmental → Aquatic → Sediment	0.86%
Floodplain	Environmental → Terrestrial → Floodplain	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	27.59%
Loam	Environmental → Terrestrial → Soil → Loam	18.10%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.72%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	27.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.28%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.59%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.72%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.72%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.72%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	13.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	11.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.31%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.31%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.31%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.31%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.59%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.59%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.72%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.72%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.72%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.72%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.86%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013059	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013062	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025862	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063356_1030881703	3300004463	Arabidopsis Thaliana Rhizosphere	CGSSDDESEGMYTPTMTLKSAATFAFIGTLLAAALLVWNLLFDLINVAQGLVPLARLFSSSFYALAALSLAVFFYVFRKTQN*
Ga0058863_100195194	3300004799	Host-Associated	MTPKSAATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH*
Ga0058862_102098032	3300004803	Host-Associated	LALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH*
Ga0070683_1000244028	3300005329	Corn Rhizosphere	MSLKNAATFAFIGALLAAALLIYYFVFDVINVAQGLIPLVTLFPAFIYALAALSLTVFLYVFRKTQS*
Ga0070683_1000369637	3300005329	Corn Rhizosphere	MTLKGAATFAFIGTLLTAALLIYNFVFDMVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQV*
Ga0070683_1010381792	3300005329	Corn Rhizosphere	HGATTMTLKSAATFAFIGTLLAAALLIYDFVFDIVSLSRGLIPLVRLFPSFIYALAALSLTVFFFVFQKKES*
Ga0068868_1005846483	3300005338	Miscanthus Rhizosphere	MYTPSMSLKNAALLAFVGTLLAAALLIYDFVFDIINFAQGLIPLVKLFASFIYALAALSLAVFFYVFHKKTE*
Ga0070689_1003137582	3300005340	Switchgrass Rhizosphere	MYTPSMSLKYAALFAFVGTLLAAALLIYDFVFDIINVAQGLIPLAKLFAAFIYALAALSLAVFFYVFQKKSE*
Ga0070687_1005162383	3300005343	Switchgrass Rhizosphere	LAFVGTLLAAALLIYDFVFDIINFAQGLIPLVKLFASFIYALAALSLAVFFYVFHKKTE*
Ga0070674_1010726821	3300005356	Miscanthus Rhizosphere	MTLRNAATFAFLGTLLLTALLVWNFVFYLVNVIQGLTPVAGLLSLLIQAFAALSLAVFFYVFRNAQR*
Ga0070709_100883004	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTLQNAATFAFVGTLLAAALLIWDFVFDVVSVAQGLVPLARVLSSFVHALAALSLAVFFYVFRKTQN*
Ga0070709_108317182	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSLKSAATFAFIGMLLAAALLIYYFVFDVINVAQGLIPLVKLFPSFIYALAALGVTVFFFVFQKRQS*
Ga0070709_109176882	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKQKGFFVYPSMGQPTMTLKSAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKTQS*
Ga0070711_1017298381	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGQPTMTLKSAATFAFIGTLLAAALLIYDFVFDVISLAQGLIPLVKVFPSFIYALAALTLTVFFFVFQKKQS*
Ga0070735_1000286617	3300005534	Surface Soil	MGATMTNKSAATFAFIGTLLAAALLIYDFVFDVINVADGLTPLVKLFSSFIYALAALSVTIFFFVFQKRQS*
Ga0070735_109532202	3300005534	Surface Soil	LFAFIGTLLAAALLIYDFVFDVINLSQGLIPLVKLFPSFIYALAGLSLTVFFFVFQKKQS
Ga0070684_1015065962	3300005535	Corn Rhizosphere	ATFAFIGTLLAAALLIYDFVFDIVSLSRGLIPLVRLFPSFIYALAALSLTVFFFVFQKKES*
Ga0070697_1000783012	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTLQNAATFAFVGTLLAAALLIWDFVFDVVSVVQGLVPLARVLSSFVHALAALSLAVFFYVFRKTQN*
Ga0070731_108611552	3300005538	Surface Soil	MSLKSAATFAFIGTLLAAALLIYYFVFDIINVADGLTPLVKLFPSFIYALAALSLTVFFFVFQKKQS*
Ga0070693_1002444133	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MYTPSMTLKNTATFAFIGTLLAAVLLIWNFVFDVVNLAQGLIPLAKLLPSLVYAFAALSLTVFFYVFRKEPG*
Ga0068855_1001511522	3300005563	Corn Rhizosphere	MKHKGFFVYPFMGQLQMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQ
Ga0070664_1008778132	3300005564	Corn Rhizosphere	MTLKSAATFAFIGTLLAAALLIYDFVFDIVSLSRGLIPLVRLFPSFIYALAALSLTVFFFVFQKKES*
Ga0068857_1009142112	3300005577	Corn Rhizosphere	MYTPSMSLKNAALLAFVGTLLAAALLIYDFVFDIINVAQGLIPLVKLFASFIYALAALSLAVFFYVFHKKTE*
Ga0068856_10000360314	3300005614	Corn Rhizosphere	MKHKGFFVYPFMGQLQMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG*
Ga0068864_1020926912	3300005618	Switchgrass Rhizosphere	MTNKSAATFAFIGTLLAAALLIYYFVFDIIDVSQGLIPLVKLFPAFIYALAALSLTIFLYVFRRTQH*
Ga0068858_1007650482	3300005842	Switchgrass Rhizosphere	MSLKSAATFAFIGTLLATALLIYYFVFDIIHVADGLTPVVKLFPSFIYALAALSLTVFFFVFQKRQS*
Ga0075017_1002521522	3300006059	Watersheds	MTLKNVATFAFVGMLLVAALLVWDFVFDVVNVAQGLIPLVKLFPAFLYALAGLGLTAFFFVFRKNQN*
Ga0070716_1010760491	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	TSGIYPPVMSLKSAATFAFIGMLLAAALLIYYFVFDVINVAQGLIPLVKLFPSFIYALAALGVTVFFFVFQKRQS*
Ga0070712_1020045311	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ATRMKQKGFFVYPSMGQPTMTLKSAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKTQS*
Ga0070765_1000732973	3300006176	Soil	MNIKNAATFAFIGTLLAAALLIYDFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFYVFRKTQT*
Ga0068871_1000580925	3300006358	Miscanthus Rhizosphere	MTNKSAATFAFIGTLLAAALLIYYFVFDIIDVTQGLIPLVKLFPAFIYALAALSLTIFLYVFRRTQH*
Ga0075522_1000014523	3300006638	Arctic Peat Soil	MTLKGAATFAFIGTLLAAVLLIYDFVFDVISLARGLAPLVKLFPSFIYAFAALSLAVFFFIFQKKQN*
Ga0075425_1012408902	3300006854	Populus Rhizosphere	MSLKSAATFAFIGTLLAAALLIYYFVLDVINVAQSLIPLVKLFPSFIYALAALSLTVFFFVFKKGQS*
Ga0075434_1025756651	3300006871	Populus Rhizosphere	MTLKNAATLAFIGTLLAAALQVWDLVFDVVNVVRGLIPPARLFSSLLYAFAAVSLTVFFYVFRKTP*
Ga0073928_110020272	3300006893	Iron-Sulfur Acid Spring	MTLKGAATFAFIGTLLAAALLIWNLIFDLVNIMRGLIPAVTLFSALIYALAALSLAVFFYVFRQRNN*
Ga0075426_109929812	3300006903	Populus Rhizosphere	MTLKNAATLAFIGTLLAAALQVWDLVFDVVNVVRGLIPPARLFSSLLYAFAAVSLTVFFYVFRKTHN*
Ga0075424_1006509122	3300006904	Populus Rhizosphere	MTLKNAATLAFIGTLLAAALQVWDLLFDVVNVVRGLIPPARLFSSLLYAFAAVSLTVFFYVFRKTHN*
Ga0105240_117600711	3300009093	Corn Rhizosphere	TMTLKSAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKTQS*
Ga0105245_123674852	3300009098	Miscanthus Rhizosphere	MSLKNAATFAFIGALLAAALLIYYFVFDVISVAQGLIPLVTLFPAFIYALAALSLTVFLYVFRKTQS*
Ga0105245_132834032	3300009098	Miscanthus Rhizosphere	MSLKNAALLAFVGTLLAAALLIYDFVFDIINFAQGLIPLVKLFASFIYALAALSLAVFFYVFHKKTE*
Ga0075418_128168491	3300009100	Populus Rhizosphere	PGVRNVHTPDMNLKNAATFAFIGALLAAALLVWNLVFDVVNLAQGLIALTRVLSSLVHALEAVSLAVFFYVFRKMQA*
Ga0105243_102761434	3300009148	Miscanthus Rhizosphere	MSLKNAATLAFIGTLLAAALLIWDFVFDVVNVAQGLIPLAKVFPALIYAFAALSVTVFFYCFRKKSD*
Ga0105241_113856851	3300009174	Corn Rhizosphere	MTLKGAATFAFIGTLLTAALLIYNFVFAMVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQV*
Ga0105241_114668842	3300009174	Corn Rhizosphere	MSLKNAATFAFIGALLAAALLIYYFVFDVISVAQGLIPLVTLFPAFIYALAALSL
Ga0105248_106530063	3300009177	Switchgrass Rhizosphere	MTLKSAATFAFIGTLLAAALLIYDFVFDVISLAQGLIPLVKVFPSFIYALAALTLTVFFFVFQKKQS*
Ga0105248_116556031	3300009177	Switchgrass Rhizosphere	MTLKSAATFAFIGTLLATLALIWDFVSDIVNVAQGLVPVAKLLASFVGALAALSLTVFFYVFQKTQN*
Ga0105237_101367415	3300009545	Corn Rhizosphere	LDEESEAGTLATKGSGIYPPGMSLKSAATFAFIGTLLATALLIYYFVFDIINVAQGLTPLVKLFPSFIYALAALSLTIFLFVFQKRQS*
Ga0105237_114144592	3300009545	Corn Rhizosphere	MSLKSAATFAFIGTLLAAALLIYDFVFDIINVAQGLTPLVKLFSSFIYSLAALSLTVFLFVFQKRQS*
Ga0105237_117336551	3300009545	Corn Rhizosphere	TLATKGSSVYPPAMSLKNAATFAFIGALLAAALLIYYFVFDVISVAQGLIPLVTLFPAFIYALAALSLTVFLYVFRKTQS*
Ga0105238_112468721	3300009551	Corn Rhizosphere	MKHKGFFVYPFMGQLQMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQKKQG*
Ga0105249_100454962	3300009553	Switchgrass Rhizosphere	MTLKSAATFAFIGTLLAAALLIYDFVFDIVSLSRGLIPLVRLFSSFIYALAALSLTVFFFVFQKKES*
Ga0134125_108446402	3300010371	Terrestrial Soil	MKQKGFFVYPSMGQPTMTLKGAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKKQS*
Ga0134128_106912972	3300010373	Terrestrial Soil	MTLQNAATFAFVGTLLAAALLIWDFVFDVVSVAQGLVPLARVLSSFVHALAALSLAVFFYVFRKSQN*
Ga0105239_101922643	3300010375	Corn Rhizosphere	LVEESEAGTLATKGSGIYPPGMSLKSAATFAFIGTLLAAALLIYYFVFDIINVAQGLTPLVKLFPSFIYALAALSLTIFLFVFQKRQS*
Ga0105239_106526653	3300010375	Corn Rhizosphere	MSLKNAATLAFIGTLLAAALLIWDFVFDVVNVAQGLIPLAKVFPALIYAFAALSVT
Ga0136449_1001668347	3300010379	Peatlands Soil	MSLKNAATFAFIGTLLAAALLIYYFVFDIINVADGLTPLVKLFPSFIYALGALSLTVFFYVFRKQN*
Ga0105246_102120183	3300011119	Miscanthus Rhizosphere	MSLKYAALFAFVGTLLAAALLIYDFVFDIINVAQGLIPLAKLFAAFIYALAALSLAVFFYVFQKKSE*
Ga0150983_137228291	3300011120	Forest Soil	FAFIGTLLAAALLIWDFVFDVVNVVQGVVAPVKLFPSFIYALAALSLAVFFYVFRKTQS*
Ga0164303_114776931	3300012957	Soil	TLQNAATFAFVGTLLAAALLIWDFVFDVVSVVQGLVPLARVLSSFVHALAALSLAVFFYVFRKTQN*
Ga0164305_108509982	3300012989	Soil	MTLQNAATFAFVGTLLAAALLIWDFVFDVVSVAQGLVPLARVLSAFVHALAALSLAVFFYVFRKTQN*
Ga0154012_1619312	3300013059	Corn, Switchgrass And Miscanthus Rhizosphere	AATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH*
Ga0154010_1660893	3300013062	Corn, Switchgrass And Miscanthus Rhizosphere	TPKSAATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH*
Ga0157369_102571682	3300013105	Corn Rhizosphere	LDEESEAGTLATKGSGIYPPGMSLKSAATFAFIGTLLAAALLIYYFVFDIINVAQGLTPLVKLFPSFIYALAALSLTIFLFVFQKRQS*
Ga0157374_100206174	3300013296	Miscanthus Rhizosphere	MSLKNAATFAFIGALLAAALLIYYFVFDVINVAQGLIPLVTIFPAFIYALAALTLTVFLYVFRKTQS*
Ga0157374_116395232	3300013296	Miscanthus Rhizosphere	MSLKYAALFAFVGTLLAAALLIYDFVFDLINVLRGLTPAITLFPALIFAFAALSLAIFFFLFQKKQN*
Ga0157378_119909002	3300013297	Miscanthus Rhizosphere	MGLKSAATFAFIGMLLAAALLIYYFVFDVINVAQGLIPLVKLFPSFIYALAALGVTVFFFVFQKRQS*
Ga0157375_110839443	3300013308	Miscanthus Rhizosphere	MSLKYAALFAFVGTLLAAALLIYDFVFDIINFAQGLIPLVKLFASFIYALAALSLAVFFYVFHKKTE*
Ga0163163_118087953	3300014325	Switchgrass Rhizosphere	MRLKNAALLAFVGTLLAAALLIYDFVFDIINFAQGLIPLVKLFASFIYALAALSL
Ga0182024_110138733	3300014501	Permafrost	MTLKSAATFAFIGTLLAAALLIYDFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFYVFRKQN*
Ga0157376_101048693	3300014969	Miscanthus Rhizosphere	MSLKNAATLTFVGTILAAALLVWDFVSDVANVLQGLVPAVRLFSSLIYAFAAVCLAVFFYAFQKTQR*
Ga0157376_119662751	3300014969	Miscanthus Rhizosphere	MSLKNAATVALVGTLLTAALLVWRFVFDVVNVVRGLIPAADLFSSLLYAFAAVSLAVFFYIFQRSQK*
Ga0187779_102805003	3300017959	Tropical Peatland	VSLRSAATIAFVGTLLAAALLIYYFVFDIINVADGLIPLVKLFPSFIYALAALGLAIFFFVFQKRQS
Ga0066669_122762062	3300018482	Grasslands Soil	MTLKGAATFAFIGTLLAAALLIYNFVFDIVSLSQGVIPLVKLFPSFIYALAALSLTVFFFVFHKKQG
Ga0197907_102208341	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	IMAPNVSLHRTSTMTPKSAATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH
Ga0197907_103206171	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	QMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0197907_112464551	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MTLKSAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKTQS
Ga0206356_110651521	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	TLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH
Ga0206356_116990831	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	TMTLKSAATFAFIGTLLAAALLIYDFVFDIVSLSRGLIPLVRLFPSFIYALAALSLTVFFFVFQKKES
Ga0206356_117157521	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	KGAAMFAFIGTLLAAALLLYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0206349_11835911	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	LQMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0206349_16739311	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MTPKSAATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH
Ga0206351_100729341	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	TMTPKSAATLALIGVVLAAVLLIYDFVFDIVSVTRGLIPVVRLFPALIYAFAAFSLAVFVYVFRKTQH
Ga0206352_109112873	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MTNKSAATFAFIGTLLAAALLIYYFVFDIIDVSQGLIPLMKLFPAFIYALAALSLTIFLYVFRRTQH
Ga0206352_112992901	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	FAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0206350_110290261	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0210403_104893512	3300020580	Soil	MTLKTAATFAFIGTLLAAALLIWDFVFDVVNVVQGVVAPVKLFPSFIYALAALSLAVFFYVFRKTQS
Ga0154015_11744253	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	IGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0210400_105104901	3300021170	Soil	MTLKSAATFAFIGTLLAAALLVWDFVFDLINVIQGLVPAVKLFSSLIYAFAAVSLAVFFYVFRKAQS
Ga0210383_104424512	3300021407	Soil	IYPPIMNLKSAATFAFIGTLLAAALLIYYFVFDIINVADGLIPLVKLFPSFIYALAALSLTVFFFVFQKKQN
Ga0224712_100169304	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0242665_101861402	3300022724	Soil	VFAFIGTLLAAALLVWEFVSDLVFVVQGLVPLAKLLSSLLYAFAAVSLVVFFYVFQKSQS
Ga0242654_101963142	3300022726	Soil	MTLKNAAVFAFIGTLLAAALLVWEFVSDLVFVVQGLVPLAKLLSSLLYAFAAVSLAVFFY
Ga0209483_100182615	3300025862	Arctic Peat Soil	MTLKGAATFAFIGTLLAAVLLIYDFVFDVISLARGLAPLVKLFPSFIYAFAALSLAVFFFIFQKKQN
Ga0207695_100259002	3300025913	Corn Rhizosphere	MKHKGFFVYPFMGQLQMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0207695_115766311	3300025913	Corn Rhizosphere	KSAATFAFIGTLLAAALLIYDFVFDIVSLAQGLIPLVKLFPSFIYALAALSLTVFFFVFQKTQS
Ga0207671_103438092	3300025914	Corn Rhizosphere	MTLKSAATFAFIGTLLAAALLIYDFVFDIVSLSRGLIPLVRLFPSFIYALAALSLTVFFFVFQKKES
Ga0207671_104728853	3300025914	Corn Rhizosphere	LDEESEAGTLATKGSGIYPPGMSLKSAATFAFIGTLLAAALLIYYFVFDIINVAQGLTPLVKLFPSFIYALAALSLTIFLFVFQKRQS
Ga0207663_113874721	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MGQPTMTLKSAATFAFIGTLLAAALLIYDFVFDVISLAQGLIPLVKVFPSFIYALAALTLTVFFFVFQKKQS
Ga0207670_112402511	3300025936	Switchgrass Rhizosphere	MYTPSMSLKYAALFAFVGTLLAAAPLIYDFVFDIINVAQGLIPLAKLFAAFIYALAALSLAVFFYVFQKKSE
Ga0207665_109831002	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ESEKRALATETYGIYPPVMSLKSAATFAFIGMLLAAALLIYYFVFDVINVAQGLIPLVKLFPSFIYALAALGVTVFFFVFQKRQS
Ga0207661_101926253	3300025944	Corn Rhizosphere	MSLKNAATFAFIGALLAAALLIYYFVFDVISVAQGLIPLVTLFPAFIYALAALSLTVFLYVFRKTQS
Ga0207667_100574971	3300025949	Corn Rhizosphere	KHKGFFVYPFMGQLQMTLKGAAMFAFIGTLLAAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0207703_115778882	3300026035	Switchgrass Rhizosphere	MSLKSAATFAFIGTLLATALLIYYFVFDIIHVADGLTPVVKLFPSFIYALAALSLTVFFFVFQKRQS
Ga0207639_102013773	3300026041	Corn Rhizosphere	MTLKGAATFAFIGTLLTAALLIYNFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFFVFQRKQG
Ga0207641_106435843	3300026088	Switchgrass Rhizosphere	MYTPSMSLKYAALFAFVGTLLAAALLIYDFVFDIINVAQGLIPLAKLFAAFIYALAALSLAVFFYVFQKKSE
Ga0207676_102774074	3300026095	Switchgrass Rhizosphere	MYTPSMSLKNAALLAFVGTLLAAALLIYDFVFDIINFAQGLIPLVKLFASFIYALAALSLAVFFYVFQKKSE
Ga0209168_100219282	3300027986	Surface Soil	MGATMTNKSAATFAFIGTLLAAALLIYDFVFDVINVADGLTPLVKLFSSFIYALAALSVTIFFFVFQKRQS
Ga0265338_101452352	3300028800	Rhizosphere	MSLKSAATFAFIGTLLATALLIYYFISDIINVADGLTPLVKLFPSFIYALAAVSLTVFLFVFQKKQS
Ga0308309_100554452	3300028906	Soil	MNIKNAATFAFIGTLLAAALLIYDFVFDIISLSQGLIPLVKLFPSFIYALAALSLTVFFYVFRKTQT
Ga0170824_1168207972	3300031231	Forest Soil	MTLKSAATFAFLGTLLAAALLIYDFVFDIVSLSRGLIPVVRLFPSFIYALAALSLTVFFFVFQKRES
Ga0170824_1170883862	3300031231	Forest Soil	MTLKGAALLAFIATLLAAALLIFDFVFDIINVAEGLIPLVKVFPSLIYAFASLSLTVFFFIFQKKQN
Ga0265340_102809892	3300031247	Rhizosphere	MTNKSAATFAFIGTLLAAVLLIYYFILDIVNVADGLTPLVKLFPSFIYALAALSLAVFFFVFRKTQN
Ga0265313_100116072	3300031595	Rhizosphere	MTIKGAATFAFIGTLLAAALLIYYFIFDIINVADGLTPLVKLFPSFIYALAALSLTVFFYVFRKQN
Ga0311301_100808671	3300032160	Peatlands Soil	PSIMSLKNAATFAFIGTLLAAALLIYYFVFDIINVADGLTPLVKLFPSFIYALGALSLTVFFYVFRKQN
Ga0310810_101215103	3300033412	Soil	MTLQNAATFAFLGTLLAAALLVWNFVFDLINVIQGLIPAVRLFSSLIYAFAAVSLAVFFYVFRKVRS
Ga0364945_0166595_160_363	3300034115	Sediment	MTLRNAATFAFLGTLLLTALLVWNFVFYLVNVIQGLTPVAGLLSLLIQAFAALSLAVFFYVFRNAQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079092

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences