NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F079095

Metagenome / Metatranscriptome Family F079095

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F079095
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 42 residues
Representative Sequence VPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILL
Number of Associated Samples 101
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 59.48 %
% of genes near scaffold ends (potentially truncated) 33.62 %
% of genes from short scaffolds (< 2000 bps) 87.93 %
Associated GOLD sequencing projects 99
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil
(7.759 % of family members)
Environment Ontology (ENVO) Unclassified
(21.552 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.586 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 47.14%    β-sheet: 0.00%    Coil/Unstructured: 52.86%
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Variant

510152025303540VPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILLExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Soil
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Surface Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Permafrost
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Rice Paddy Soil
Peatland
Tropical Peatland
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Rhizosphere
Corn Rhizosphere
7.8%3.4%7.8%3.4%4.3%6.0%3.4%4.3%4.3%7.8%3.4%6.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1006699823300000597Forest SoilVPSVATYNAGEKLSMFVLAAAVLAGAIGSAFAAGWVIGRILL*
JGI1027J12803_10531205823300000955SoilVPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
A3PFW1_1003338033300001535PermafrostVASTATHNPPENRHQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL*
soilH2_1028322923300003324Sugarcane Root And Bulk SoilMATTATHRPGEKLSIFALAAFVLAGAIGSAFAAGFLIGRMLL*
Ga0062589_10226416623300004156SoilVPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0062590_10163409423300004157SoilVPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL*
Ga0062592_10065367923300004480SoilVPSTATYNTSESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0066395_1030330933300004633Tropical Forest SoilVPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILL*
Ga0062591_10104090933300004643SoilTHNPPESRAEKLSMFVLAFGVLTGAIGSAFAAGWVIGRMLL*
Ga0062591_10232930023300004643SoilVPPTATTYNAGEKVSMFMLAALVLAAATGSAFAAGWVIGRMLL*
Ga0066673_1012153243300005175SoilATHSPPESRAQKLSMFAFAAIVLAAAIGSAFAAGWVIGRMLL*
Ga0066673_1023482413300005175SoilVPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAAGWVIGRILL*
Ga0066690_1010104543300005177SoilYVASTATYNPPAGRYERLSMFALAATVLVGAIGSAFAAGWLIGRMLL*
Ga0066688_1081244423300005178SoilVASTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL*
Ga0066388_10183849123300005332Tropical Forest SoilVPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWVIGRILL*
Ga0066388_10353683823300005332Tropical Forest SoilVPSAATYNAGEKLSMFVLAAAILAGAIGSAFAAGWVIGRILL*
Ga0070682_10004079913300005337Corn RhizosphereVPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRM
Ga0070682_10080071923300005337Corn RhizosphereVPSTATYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0070660_10139658023300005339Corn RhizosphereVLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMPV*
Ga0070709_1027497723300005434Corn, Switchgrass And Miscanthus RhizosphereVLSTATYNVGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL*
Ga0066687_1012167843300005454SoilVASTATYNPPAGRYERLSMFGLAATVLVGAIGSAFAAGWLIGRMLL*
Ga0070699_10171668623300005518Corn, Switchgrass And Miscanthus RhizosphereVASTVTHNPGEKLAMFALAAFVLSLAVGTAFAAGWVIGRIVL*
Ga0073909_1067626213300005526Surface SoilVPSTATYNPPESRAEKLSMLVLAFAVLAVAIGSAFAAGWVIGRMLL*
Ga0070739_1000287333300005532Surface SoilVVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL*
Ga0068853_10092157813300005539Corn RhizosphereTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL*
Ga0070686_10171827023300005544Switchgrass RhizosphereVPPTATTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP*
Ga0070693_10145643423300005547Corn, Switchgrass And Miscanthus RhizosphereVPPTTTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP*
Ga0066703_1012986043300005568SoilRTATYNPGEKLTMFALAAFVLSLAVGTAFAAGWVIGRIVL*
Ga0068856_10008171733300005614Corn RhizosphereVLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMPL*
Ga0070702_10138316313300005615Corn, Switchgrass And Miscanthus RhizospherePPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL*
Ga0066903_10118943233300005764Tropical Forest SoilVPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWIIGR
Ga0075269_1002182133300005905Rice Paddy SoilNATHSAGEVLSMFILATIVLAGAIGSAFAAGFVIGRILL*
Ga0070717_1163283913300006028Corn, Switchgrass And Miscanthus RhizosphereVPSSATYNVGEKLSMIALAAIVLAAAIGSAFAAGWVIGR
Ga0070716_10095829423300006173Corn, Switchgrass And Miscanthus RhizosphereVQNTATYNVGEKLSMIALAIFVLAAATGSAFAAGWVIGRMLL*
Ga0066660_1092035233300006800SoilYNPPAGRYERLSMFGLAATVLVGAIGSAFAAGWLIGRMLL*
Ga0079221_1035326623300006804Agricultural SoilVASSATHNPRAGRYEKLSMFLLAFVVLGGAIGSAFAAGFFIGRILL*
Ga0079220_1175910213300006806Agricultural SoilTYNAGEKLSMFVLAALVLAAAIGSAFAAGWVIGRILL*
Ga0075433_1129315513300006852Populus RhizosphereVPSPATYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0075425_10296441223300006854Populus RhizosphereTATTYNAGEKLSMFVLAAAVLAAAIGSAFAAGWIIGRILL*
Ga0066709_10105748623300009137Grasslands SoilMTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL*
Ga0066709_10154210513300009137Grasslands SoilVPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAACWVIGRILL*
Ga0105248_1066623213300009177Switchgrass RhizosphereTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0126380_1057359733300010043Tropical Forest SoilLRISVPSTATYSPPISRQEKLSMFVLAAVVLVAVVGTAFAAGWLIGRILL*
Ga0126384_1188798613300010046Tropical Forest SoilPATHKVGDKLTMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0126318_1048393723300010152SoilATYNAGEKLSIFALAALVLAAAIGSAFAAGWVIGRILL*
Ga0126372_1000572363300010360Tropical Forest SoilVPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWIIGRILL*
Ga0126378_1061167633300010361Tropical Forest SoilMPGPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0126377_1217400523300010362Tropical Forest SoilVPSTATYNAGEKLSMFVLAAAVLASAIGSAFAAGWVIGRILL*
Ga0134066_1039886023300010364Grasslands SoilVPSTATYNPPKDKADKLSMFVLAFAVLAVAIGSAFAAGWVIGRILL*
Ga0134128_10007989113300010373Terrestrial SoilVAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL*
Ga0126381_10109400213300010376Tropical Forest SoilMPRPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0126381_10213133033300010376Tropical Forest SoilVPSAATYNAGEKLSMFILAAAVLAGSIGSAFAAGWVIGRILL*
Ga0126381_10224065913300010376Tropical Forest SoilMPRPATDKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL*
Ga0134126_1025027023300010396Terrestrial SoilVAKTSAYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL*
Ga0137383_1028965323300012199Vadose Zone SoilVTHSRPESWYTKLSIFALATAVLASAIGSAFAAGWVIGRMLL*
Ga0137383_1072108823300012199Vadose Zone SoilVARTATYNPGEKLTMFALAAFVLSLAVGTAFAAGWVIGRIVL*
Ga0137379_1182738813300012209Vadose Zone SoilVASNATHNPPESRHEKLAMFALAALVLAGAIGTAFAAGWVIGRMVL*
Ga0137377_1131172213300012211Vadose Zone SoilVASTATHNPPESRHEKLAMFALAALVLVGAIGTAFAAGWVIGRIVL*
Ga0134061_112063023300012399Grasslands SoilSGEKLSMFAFAALVLAAATGSAFAAGWVIGRMLL*
Ga0157301_1033548613300012911SoilVPSTATYNPPESKAEKLSMFVLAFAVLAGAIGSAFAAGWVIGRILL*
Ga0126375_1107767323300012948Tropical Forest SoilVPSAATYNAGEKLSMFVLAAAVLASAIGSAFAAGWVIGRILL*
Ga0164298_1084872323300012955SoilVGEKLSMIALAIFVLAAATGSAFAAGCVIGRMLL*
Ga0164301_1172597623300012960SoilVPSTATYNVGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL*
Ga0134077_1039605223300012972Grasslands SoilVPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAAGWVIGRMLL*
Ga0134110_1008469713300012975Grasslands SoilTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL*
Ga0164306_1196510523300012988SoilVPSFATYNAGEKLSMFILAAAVLAAAIGSAFAAGWIIGRILL*
Ga0164305_1132596913300012989SoilTTTYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL*
Ga0120179_105595413300013763PermafrostAPCTFSRSSVASTATHNPPENRHQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL*
Ga0120158_1029749123300013772PermafrostVASTATYNPPESWHEKLAIFALAALVLAGAVGSAFAAGWVIGRIVL*
Ga0182008_1039598423300014497RhizosphereVASNATYNHGEKLSMFVLAALVLVGSIGSAFAAGFVIGRILL*
Ga0182006_132700523300015261RhizosphereVPPTATHSAGEKLSIFVLAALVLAAAIGSAFAAGWVIGRMLL*
Ga0182005_128836923300015265RhizosphereVATTAIYNRPLGRYEKLSMWALAATVLVVAIGSAFAAGFVIGRILL*
Ga0182034_1042113223300016371SoilMPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRIFL
Ga0187779_1072510423300017959Tropical PeatlandMASAATYNHGEKPSMFLLAAVVLVGAVGSAFAAAWTIGRILS
Ga0187780_1037015623300017973Tropical PeatlandMASAATYNHGEKPSMFLLVSVVLVGAVGSAFAAAWTIGRILS
Ga0066655_1143837613300018431Grasslands SoilPDPREKLSMFALAAFVLAGAIGSAFAAGWMIGRILL
Ga0193751_100229683300019888SoilVASTATYNPPESRHEKLAIFALAALVLAAAVGTAFAAGWVIGRIVL
Ga0193751_103248623300019888SoilVASTATDNPPGSRYQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL
Ga0206356_1030555633300020070Corn, Switchgrass And Miscanthus RhizosphereVPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL
Ga0206353_1205727823300020082Corn, Switchgrass And Miscanthus RhizosphereVPPTATTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLL
Ga0182009_1012534633300021445SoilVPPTATTYNAGEKVSMFMLAALVLAAATGSAFAAGWVIGRMLL
Ga0182009_1020631223300021445SoilVPPTATTYNAGEKLSLFVLAALVLAAAIGSAFAAGWVIGRMLL
Ga0224712_1013165713300022467Corn, Switchgrass And Miscanthus RhizosphereTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL
Ga0247688_100767423300024186SoilVLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMRV
Ga0247674_102705813300024275SoilVLSTATYNAGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL
Ga0247668_111280023300024331SoilNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL
Ga0207662_1045320223300025918Switchgrass RhizosphereVPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL
Ga0207652_1023903513300025921Corn RhizosphereVPPTTTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP
Ga0207665_1032285733300025939Corn, Switchgrass And Miscanthus RhizosphereVQNTATYNVGEKLSMIALAIFVLAAATGSAFAAGWVIGRMLL
Ga0207676_1163675013300026095Switchgrass RhizosphereVPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGMALPFL
Ga0209027_120821823300026300Grasslands SoilVASTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL
Ga0209159_125679313300026343SoilTHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL
Ga0209810_1000715403300027773Surface SoilVARTVVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL
Ga0307276_1004509133300028705SoilTATYNAPEGKHERLSMFVLAFAVLAGAIGSAFAAGWVIGRMLL
Ga0307506_1032137623300031366SoilVASRVIHSPGGKLSMFALAAVVLAAAIGSAFAAGWVIGRMLL
Ga0170820_1441347613300031446Forest SoilNDPKEKLSMFVPAACVLAAVVGTAFARGFMIGKILL
Ga0318534_1005126323300031544SoilMPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL
Ga0308175_10035172443300031938SoilVPSSETYNSGEKLSMFAFAALVLAAATGSAFAAGWVIGRMLL
Ga0308175_10322245223300031938SoilVPPTATHSPGTDGHEKLSMFALAFVVLVAAIGSAFAAGWVIGRMLL
Ga0306926_1042211543300031954SoilTSMPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL
Ga0308176_1111462713300031996SoilVAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL
Ga0318524_1012009613300032067SoilATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL
Ga0308173_1114982323300032074SoilWRSWSSEVAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL
Ga0308173_1118982013300032074SoilVAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIG
Ga0307471_10193855223300032180Hardwood Forest SoilVPNSATYKVGEKLSMFILAAAVLATAIGSAFGAGWIIGRILL
Ga0335085_1027344923300032770SoilMTSSATHNPGGKLSIFALAMVVLLGAVGSAFAAGWVIGRMLL
Ga0335085_1112271523300032770SoilVPNTATYNAGEKLSMIAMAIFVLAAATGSAFAAGWVIGRMLL
Ga0335082_1006178233300032782SoilVARTATYNPSEKLSMFALAAFVFVAAIGSAFAAGWMIGRMLL
Ga0335082_1016678153300032782SoilVPSTATYNVGDKLSMIALAVFVLAAATGSAFAAGWVIGRMLL
Ga0335082_1025441233300032782SoilVPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWVIGRMLL
Ga0335079_1032250323300032783SoilMPRPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL
Ga0335070_1022104933300032829SoilVPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWVI
Ga0335071_1018447313300032897SoilVPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWV
Ga0335072_1130174023300032898SoilMPRPATHKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL
Ga0314862_0186043_172_3003300033803PeatlandVPNTATYNLSEKLSMIAFATLVLAAAIGSAFAAGCVIGRILL
Ga0314864_0175963_194_3223300033805PeatlandVPNTATYNLSEKLSMIAFATLVLAAAIGSAFAAGWVIGRILL


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