Basic Information | |
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Family ID | F079095 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 116 |
Average Sequence Length | 42 residues |
Representative Sequence | VPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILL |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 116 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 59.48 % |
% of genes near scaffold ends (potentially truncated) | 33.62 % |
% of genes from short scaffolds (< 2000 bps) | 87.93 % |
Associated GOLD sequencing projects | 99 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (7.759 % of family members) |
Environment Ontology (ENVO) | Unclassified (21.552 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (52.586 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.14% β-sheet: 0.00% Coil/Unstructured: 52.86% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grasslands Soil Surface Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Agricultural Soil Sugarcane Root And Bulk Soil Permafrost Soil Grasslands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Soil Rice Paddy Soil Peatland Tropical Peatland Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A1DRAFT_100669982 | 3300000597 | Forest Soil | VPSVATYNAGEKLSMFVLAAAVLAGAIGSAFAAGWVIGRILL* |
JGI1027J12803_1053120582 | 3300000955 | Soil | VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
A3PFW1_100333803 | 3300001535 | Permafrost | VASTATHNPPENRHQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL* |
soilH2_102832292 | 3300003324 | Sugarcane Root And Bulk Soil | MATTATHRPGEKLSIFALAAFVLAGAIGSAFAAGFLIGRMLL* |
Ga0062589_1022641662 | 3300004156 | Soil | VPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
Ga0062590_1016340942 | 3300004157 | Soil | VPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL* |
Ga0062592_1006536792 | 3300004480 | Soil | VPSTATYNTSESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
Ga0066395_103033093 | 3300004633 | Tropical Forest Soil | VPSTATYNAGEKLSMFVLAAAVLAAAIGSAFAAGWVIGRILL* |
Ga0062591_1010409093 | 3300004643 | Soil | THNPPESRAEKLSMFVLAFGVLTGAIGSAFAAGWVIGRMLL* |
Ga0062591_1023293002 | 3300004643 | Soil | VPPTATTYNAGEKVSMFMLAALVLAAATGSAFAAGWVIGRMLL* |
Ga0066673_101215324 | 3300005175 | Soil | ATHSPPESRAQKLSMFAFAAIVLAAAIGSAFAAGWVIGRMLL* |
Ga0066673_102348241 | 3300005175 | Soil | VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAAGWVIGRILL* |
Ga0066690_101010454 | 3300005177 | Soil | YVASTATYNPPAGRYERLSMFALAATVLVGAIGSAFAAGWLIGRMLL* |
Ga0066688_108124442 | 3300005178 | Soil | VASTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL* |
Ga0066388_1018384912 | 3300005332 | Tropical Forest Soil | VPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWVIGRILL* |
Ga0066388_1035368382 | 3300005332 | Tropical Forest Soil | VPSAATYNAGEKLSMFVLAAAILAGAIGSAFAAGWVIGRILL* |
Ga0070682_1000407991 | 3300005337 | Corn Rhizosphere | VPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRM |
Ga0070682_1008007192 | 3300005337 | Corn Rhizosphere | VPSTATYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
Ga0070660_1013965802 | 3300005339 | Corn Rhizosphere | VLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMPV* |
Ga0070709_102749772 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | VLSTATYNVGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL* |
Ga0066687_101216784 | 3300005454 | Soil | VASTATYNPPAGRYERLSMFGLAATVLVGAIGSAFAAGWLIGRMLL* |
Ga0070699_1017166862 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | VASTVTHNPGEKLAMFALAAFVLSLAVGTAFAAGWVIGRIVL* |
Ga0073909_106762621 | 3300005526 | Surface Soil | VPSTATYNPPESRAEKLSMLVLAFAVLAVAIGSAFAAGWVIGRMLL* |
Ga0070739_100028733 | 3300005532 | Surface Soil | VVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL* |
Ga0068853_1009215781 | 3300005539 | Corn Rhizosphere | TATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL* |
Ga0070686_1017182702 | 3300005544 | Switchgrass Rhizosphere | VPPTATTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP* |
Ga0070693_1014564342 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | VPPTTTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP* |
Ga0066703_101298604 | 3300005568 | Soil | RTATYNPGEKLTMFALAAFVLSLAVGTAFAAGWVIGRIVL* |
Ga0068856_1000817173 | 3300005614 | Corn Rhizosphere | VLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMPL* |
Ga0070702_1013831631 | 3300005615 | Corn, Switchgrass And Miscanthus Rhizosphere | PPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL* |
Ga0066903_1011894323 | 3300005764 | Tropical Forest Soil | VPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWIIGR |
Ga0075269_100218213 | 3300005905 | Rice Paddy Soil | NATHSAGEVLSMFILATIVLAGAIGSAFAAGFVIGRILL* |
Ga0070717_116328391 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VPSSATYNVGEKLSMIALAAIVLAAAIGSAFAAGWVIGR |
Ga0070716_1009582942 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | VQNTATYNVGEKLSMIALAIFVLAAATGSAFAAGWVIGRMLL* |
Ga0066660_109203523 | 3300006800 | Soil | YNPPAGRYERLSMFGLAATVLVGAIGSAFAAGWLIGRMLL* |
Ga0079221_103532662 | 3300006804 | Agricultural Soil | VASSATHNPRAGRYEKLSMFLLAFVVLGGAIGSAFAAGFFIGRILL* |
Ga0079220_117591021 | 3300006806 | Agricultural Soil | TYNAGEKLSMFVLAALVLAAAIGSAFAAGWVIGRILL* |
Ga0075433_112931551 | 3300006852 | Populus Rhizosphere | VPSPATYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
Ga0075425_1029644122 | 3300006854 | Populus Rhizosphere | TATTYNAGEKLSMFVLAAAVLAAAIGSAFAAGWIIGRILL* |
Ga0066709_1010574862 | 3300009137 | Grasslands Soil | MTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL* |
Ga0066709_1015421051 | 3300009137 | Grasslands Soil | VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAACWVIGRILL* |
Ga0105248_106662321 | 3300009177 | Switchgrass Rhizosphere | TATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
Ga0126380_105735973 | 3300010043 | Tropical Forest Soil | LRISVPSTATYSPPISRQEKLSMFVLAAVVLVAVVGTAFAAGWLIGRILL* |
Ga0126384_118879861 | 3300010046 | Tropical Forest Soil | PATHKVGDKLTMFALAGIVLAAAIGSAFAAGWVIGRILL* |
Ga0126318_104839372 | 3300010152 | Soil | ATYNAGEKLSIFALAALVLAAAIGSAFAAGWVIGRILL* |
Ga0126372_100057236 | 3300010360 | Tropical Forest Soil | VPSAATYNAGEKLSMFVLAAAVLAGTIGSAFAAGWIIGRILL* |
Ga0126378_106116763 | 3300010361 | Tropical Forest Soil | MPGPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL* |
Ga0126377_121740052 | 3300010362 | Tropical Forest Soil | VPSTATYNAGEKLSMFVLAAAVLASAIGSAFAAGWVIGRILL* |
Ga0134066_103988602 | 3300010364 | Grasslands Soil | VPSTATYNPPKDKADKLSMFVLAFAVLAVAIGSAFAAGWVIGRILL* |
Ga0134128_1000798911 | 3300010373 | Terrestrial Soil | VAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL* |
Ga0126381_1010940021 | 3300010376 | Tropical Forest Soil | MPRPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL* |
Ga0126381_1021313303 | 3300010376 | Tropical Forest Soil | VPSAATYNAGEKLSMFILAAAVLAGSIGSAFAAGWVIGRILL* |
Ga0126381_1022406591 | 3300010376 | Tropical Forest Soil | MPRPATDKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL* |
Ga0134126_102502702 | 3300010396 | Terrestrial Soil | VAKTSAYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL* |
Ga0137383_102896532 | 3300012199 | Vadose Zone Soil | VTHSRPESWYTKLSIFALATAVLASAIGSAFAAGWVIGRMLL* |
Ga0137383_107210882 | 3300012199 | Vadose Zone Soil | VARTATYNPGEKLTMFALAAFVLSLAVGTAFAAGWVIGRIVL* |
Ga0137379_118273881 | 3300012209 | Vadose Zone Soil | VASNATHNPPESRHEKLAMFALAALVLAGAIGTAFAAGWVIGRMVL* |
Ga0137377_113117221 | 3300012211 | Vadose Zone Soil | VASTATHNPPESRHEKLAMFALAALVLVGAIGTAFAAGWVIGRIVL* |
Ga0134061_11206302 | 3300012399 | Grasslands Soil | SGEKLSMFAFAALVLAAATGSAFAAGWVIGRMLL* |
Ga0157301_103354861 | 3300012911 | Soil | VPSTATYNPPESKAEKLSMFVLAFAVLAGAIGSAFAAGWVIGRILL* |
Ga0126375_110776732 | 3300012948 | Tropical Forest Soil | VPSAATYNAGEKLSMFVLAAAVLASAIGSAFAAGWVIGRILL* |
Ga0164298_108487232 | 3300012955 | Soil | VGEKLSMIALAIFVLAAATGSAFAAGCVIGRMLL* |
Ga0164301_117259762 | 3300012960 | Soil | VPSTATYNVGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL* |
Ga0134077_103960522 | 3300012972 | Grasslands Soil | VPSTATYNPPKDKAEKLSMFVLAFAVLAVAIGSAFAAGWVIGRMLL* |
Ga0134110_100846971 | 3300012975 | Grasslands Soil | TATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL* |
Ga0164306_119651052 | 3300012988 | Soil | VPSFATYNAGEKLSMFILAAAVLAAAIGSAFAAGWIIGRILL* |
Ga0164305_113259691 | 3300012989 | Soil | TTTYNPPESRAEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL* |
Ga0120179_10559541 | 3300013763 | Permafrost | APCTFSRSSVASTATHNPPENRHQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL* |
Ga0120158_102974912 | 3300013772 | Permafrost | VASTATYNPPESWHEKLAIFALAALVLAGAVGSAFAAGWVIGRIVL* |
Ga0182008_103959842 | 3300014497 | Rhizosphere | VASNATYNHGEKLSMFVLAALVLVGSIGSAFAAGFVIGRILL* |
Ga0182006_13270052 | 3300015261 | Rhizosphere | VPPTATHSAGEKLSIFVLAALVLAAAIGSAFAAGWVIGRMLL* |
Ga0182005_12883692 | 3300015265 | Rhizosphere | VATTAIYNRPLGRYEKLSMWALAATVLVVAIGSAFAAGFVIGRILL* |
Ga0182034_104211322 | 3300016371 | Soil | MPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRIFL |
Ga0187779_107251042 | 3300017959 | Tropical Peatland | MASAATYNHGEKPSMFLLAAVVLVGAVGSAFAAAWTIGRILS |
Ga0187780_103701562 | 3300017973 | Tropical Peatland | MASAATYNHGEKPSMFLLVSVVLVGAVGSAFAAAWTIGRILS |
Ga0066655_114383761 | 3300018431 | Grasslands Soil | PDPREKLSMFALAAFVLAGAIGSAFAAGWMIGRILL |
Ga0193751_10022968 | 3300019888 | Soil | VASTATYNPPESRHEKLAIFALAALVLAAAVGTAFAAGWVIGRIVL |
Ga0193751_10324862 | 3300019888 | Soil | VASTATDNPPGSRYQKLSIFALAFIVLVGAVGTAFAAGWIIGRMLL |
Ga0206356_103055563 | 3300020070 | Corn, Switchgrass And Miscanthus Rhizosphere | VPPTATTYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL |
Ga0206353_120572782 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | VPPTATTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLL |
Ga0182009_101253463 | 3300021445 | Soil | VPPTATTYNAGEKVSMFMLAALVLAAATGSAFAAGWVIGRMLL |
Ga0182009_102063122 | 3300021445 | Soil | VPPTATTYNAGEKLSLFVLAALVLAAAIGSAFAAGWVIGRMLL |
Ga0224712_101316571 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | TYNAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL |
Ga0247688_10076742 | 3300024186 | Soil | VLSTATYNVREKLSMFALAALILAAAIGSAFAPGRVIGRMRV |
Ga0247674_10270581 | 3300024275 | Soil | VLSTATYNAGEKLSMFAVAAIVLAAAIGSAFAAGWVIGRMLL |
Ga0247668_11128002 | 3300024331 | Soil | NAGEKLSMFALAALVLAAVIGSAFAAGWVIGRMLL |
Ga0207662_104532022 | 3300025918 | Switchgrass Rhizosphere | VPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGRMLL |
Ga0207652_102390351 | 3300025921 | Corn Rhizosphere | VPPTTTYNAGEKLSMFLLAALVLAAAIGSAFAAGWVIGRMLP |
Ga0207665_103228573 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | VQNTATYNVGEKLSMIALAIFVLAAATGSAFAAGWVIGRMLL |
Ga0207676_116367501 | 3300026095 | Switchgrass Rhizosphere | VPSTATYNTPESRTEKLSMFVLAFAVLAVAIGSAFTAGWVIGMALPFL |
Ga0209027_12082182 | 3300026300 | Grasslands Soil | VASTATHSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL |
Ga0209159_12567931 | 3300026343 | Soil | THSPPESRTQKLSMFAMAAIVLAAAIGSAFAAGWIIGRILL |
Ga0209810_100071540 | 3300027773 | Surface Soil | VARTVVFNPGEKLSIFTLAAVVLFGAIGSAFAAGWLIGRMLL |
Ga0307276_100450913 | 3300028705 | Soil | TATYNAPEGKHERLSMFVLAFAVLAGAIGSAFAAGWVIGRMLL |
Ga0307506_103213762 | 3300031366 | Soil | VASRVIHSPGGKLSMFALAAVVLAAAIGSAFAAGWVIGRMLL |
Ga0170820_144134761 | 3300031446 | Forest Soil | NDPKEKLSMFVPAACVLAAVVGTAFARGFMIGKILL |
Ga0318534_100512632 | 3300031544 | Soil | MPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL |
Ga0308175_1003517244 | 3300031938 | Soil | VPSSETYNSGEKLSMFAFAALVLAAATGSAFAAGWVIGRMLL |
Ga0308175_1032224522 | 3300031938 | Soil | VPPTATHSPGTDGHEKLSMFALAFVVLVAAIGSAFAAGWVIGRMLL |
Ga0306926_104221154 | 3300031954 | Soil | TSMPRPATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL |
Ga0308176_111146271 | 3300031996 | Soil | VAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL |
Ga0318524_101200961 | 3300032067 | Soil | ATYKVGEKLSMFALAGIVLAAAIGSAFVAGWVIGRILL |
Ga0308173_111498232 | 3300032074 | Soil | WRSWSSEVAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIGRILL |
Ga0308173_111898201 | 3300032074 | Soil | VAKTSTYNPGETLSMFMLAAVVLVGSIGSAFAAGFFIG |
Ga0307471_1019385522 | 3300032180 | Hardwood Forest Soil | VPNSATYKVGEKLSMFILAAAVLATAIGSAFGAGWIIGRILL |
Ga0335085_102734492 | 3300032770 | Soil | MTSSATHNPGGKLSIFALAMVVLLGAVGSAFAAGWVIGRMLL |
Ga0335085_111227152 | 3300032770 | Soil | VPNTATYNAGEKLSMIAMAIFVLAAATGSAFAAGWVIGRMLL |
Ga0335082_100617823 | 3300032782 | Soil | VARTATYNPSEKLSMFALAAFVFVAAIGSAFAAGWMIGRMLL |
Ga0335082_101667815 | 3300032782 | Soil | VPSTATYNVGDKLSMIALAVFVLAAATGSAFAAGWVIGRMLL |
Ga0335082_102544123 | 3300032782 | Soil | VPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWVIGRMLL |
Ga0335079_103225032 | 3300032783 | Soil | MPRPATYKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL |
Ga0335070_102210493 | 3300032829 | Soil | VPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWVI |
Ga0335071_101844731 | 3300032897 | Soil | VPNTATYNVGEKLSMIAMAIFVLAAATGSAFAAGWV |
Ga0335072_113017402 | 3300032898 | Soil | MPRPATHKVGEKLSMFALAGIVLAAAIGSAFAAGWVIGRILL |
Ga0314862_0186043_172_300 | 3300033803 | Peatland | VPNTATYNLSEKLSMIAFATLVLAAAIGSAFAAGCVIGRILL |
Ga0314864_0175963_194_322 | 3300033805 | Peatland | VPNTATYNLSEKLSMIAFATLVLAAAIGSAFAAGWVIGRILL |
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