Metagenome Family F079667

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079667
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	39 residues
Representative Sequence	VKSPLDIKIASYLDVKVPFTSSREEDDGLIQNKKEMEST
Number of Associated Samples	5
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	1.74 %
% of genes from short scaffolds (< 2000 bps)	1.74 %
Associated GOLD sequencing projects	4
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (93.913 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules (92.174 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.42% β-sheet: 0.00% Coil/Unstructured: 83.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00078	RVT_1	4.39
PF08284	RVP_2	2.63
PF13456	RVT_3	2.63
PF03732	Retrotrans_gag	2.63
PF10551	MULE	0.88
PF02689	Herpes_Helicase	0.88
PF00098	zf-CCHC	0.88
PF14244	Retrotran_gag_3	0.88
PF00665	rve	0.88
PF05659	RPW8	0.88
PF00759	Glyco_hydro_9	0.88
PF14227	Obsolete Pfam Family	0.88
PF02458	Transferase	0.88
PF12550	GCR1_C	0.88
PF13963	Transpos_assoc	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.88
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.88
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.88
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
All Organisms	root	All Organisms	6.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
cellular organisms	root	All Organisms → cellular organisms	6.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	5.22 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	5.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	5.22 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	5.22 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	5.22 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	5.22 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	5.22 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	5.22 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Fabales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Fabaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Papilionoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
50 kb inversion clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
NPAAA clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
indigoferoid/millettioid clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Phaseoleae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	5.22 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Vigna	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna	3.48 %
Glycine	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine	0.87 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3.48 %
Glycine subgen. Soja	subgenus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja	0.87 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.91 %
Vigna unguiculata	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3.48 %
Glycine max	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	0.87 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006943\|Ga0099822_1004638	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae	17920	Open in IMG/M
3300006943\|Ga0099822_1030651	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	4036	Open in IMG/M
3300006943\|Ga0099822_1042513	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	2369	Open in IMG/M
3300006943\|Ga0099822_1067620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1050	Open in IMG/M
3300006943\|Ga0099822_1087458	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	715	Open in IMG/M
3300021320\|Ga0214544_1022215	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Glycine → Glycine subgen. Soja → Glycine max	3899	Open in IMG/M
3300021320\|Ga0214544_1022747	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → NPAAA clade → indigoferoid/millettioid clade → Phaseoleae → Vigna → Vigna unguiculata	3692	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	92.17%
Root Nodules	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Root Nodules	7.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006943	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW	Host-Associated	Open in IMG/M
3300006944	Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW	Host-Associated	Open in IMG/M
3300021320	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3	Host-Associated	Open in IMG/M
3300021321	Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1	Host-Associated	Open in IMG/M
3300027357	Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0099822_100328148	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNEKEMEST*
Ga0099822_100351339	3300006943	Root Nodules	VKFPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEST*
Ga0099822_10046382	3300006943	Root Nodules	VKSPLDIKIASYLDVEVLSQSSREEDDGLIQNKKEMEGT*
Ga0099822_100663819	3300006943	Root Nodules	VKSPLNIKIASYLDVKVPFTKLKEEDDGLIQNKKE
Ga0099822_101010015	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEM
Ga0099822_10125633	3300006943	Root Nodules	VKSPLDIKIASYLDVKVTFTKLKEEDDGFIQNEKEMEST*
Ga0099822_101705317	3300006943	Root Nodules	VKSPLDIKKASYLDVKVLSQSSREEDDGLIQNKKEIEIT*
Ga0099822_10178421	3300006943	Root Nodules	VKSPLDIKIASYLDMKVPFTSSREEDDGLIQNKKERENT*
Ga0099822_10186741	3300006943	Root Nodules	VKSPLDIKITSYLDVKVPFTKLKEEDDGLIQNKKEMEGT*
Ga0099822_10191851	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKFKEEDDGLLQNKKEMEST*
Ga0099822_101918512	3300006943	Root Nodules	VKSPLDIKIASYLVVKVPFTKLKEEDDGLIQNEKEMENT*
Ga0099822_101942118	3300006943	Root Nodules	VKSPLDIKIACYLDVKVLSQSSKEEDDGLIQNKKEMEGT*
Ga0099822_10213429	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFVKLKEEDDGLIQNKKEMEST*
Ga0099822_10225451	3300006943	Root Nodules	MKSPLDIKIANYLDVNVPFTKPREEDDGLIQNKKEMEGT*
Ga0099822_10229462	3300006943	Root Nodules	VKSPLDIKIACYLDVKVPLTKLKRRSDGLIQTKKEMEGT*
Ga0099822_10260828	3300006943	Root Nodules	VKSPLDIKIAGYLDVKVPFTKLKEEDDGLIQNKKKMEST*
Ga0099822_10306516	3300006943	Root Nodules	VKFLLDIKIASYLDVKVRFTKLKEEDDGLIQNKKEMEST*
Ga0099822_103161010	3300006943	Root Nodules	VKSPLGIKIASYLDVKVLSQSSREEDDGLIQNKKEMEST
Ga0099822_10355153	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSESSREEDDGLIQNKKEMEST*
Ga0099822_10367731	3300006943	Root Nodules	MKSPHIKIASYLDVKVPFTKQREEYDGLIQNKKEMEGT*
Ga0099822_10385345	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEST*
Ga0099822_10400238	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSQSSREEDDGLIQNEKEMES
Ga0099822_10425132	3300006943	Root Nodules	VKSPLDIKIASYPDVKVPFTSSREEDDVLIQNKKEMEST*
Ga0099822_10436981	3300006943	Root Nodules	VKSPLDIMIASYLDVKVPFTKPREEDDGLIQNKKEMEST*
Ga0099822_10456234	3300006943	Root Nodules	LDIKIASYLDVKVLSQSSREEDDGLIQNEKERKAHKPYKT
Ga0099822_10460141	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKPKEEDDGLIQNKKEMEST*
Ga0099822_10470451	3300006943	Root Nodules	VKSPLDIKIANYLDVKVPFTKPREEDDELTQNKKEMEST*
Ga0099822_10507242	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSESSREEDDGLIQNEKEMEST*
Ga0099822_10524271	3300006943	Root Nodules	MKAKRNPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEME
Ga0099822_10526532	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKVKEEDDGLIQNKKEMEIT*
Ga0099822_10530961	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMENT*
Ga0099822_10534084	3300006943	Root Nodules	VKSPLDIKIASYLYVKVPFTKLKEEDDGLIQNKKEMEST
Ga0099822_10554152	3300006943	Root Nodules	VKSALDIKIASYLDVKLPFTSSREEDDGLIQNKKEMEST*
Ga0099822_10571441	3300006943	Root Nodules	VKSILDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEST*
Ga0099822_10579411	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFPKPGEEDDGLIQNKKEMEST*
Ga0099822_10582942	3300006943	Root Nodules	VKFPLDIKIASYLDVKVLSQSSREEDDGLIQNEKEMEST*
Ga0099822_10586364	3300006943	Root Nodules	MKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEST*
Ga0099822_10596452	3300006943	Root Nodules	VKFPLDIKIASYLDVKVPSQSSREEDDGLTQNKKEMEST*
Ga0099822_10607533	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSQSSREEDDGLIQNEKEMEST*
Ga0099822_10612653	3300006943	Root Nodules	MKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKERKAHK
Ga0099822_10628463	3300006943	Root Nodules	VTSPLDIKIASYLDVKFISQSSREEGDGLIPKKMEMEST*
Ga0099822_10645053	3300006943	Root Nodules	VKFPLDIKIASYLDVKVLSQSLREEDDALIQNKKEMENT*
Ga0099822_10651742	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEMEST*
Ga0099822_10676201	3300006943	Root Nodules	DIKIACYLDVKVPFTKLKEEDDGLIQNKKEMEGT*
Ga0099822_10702852	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSQSSKEEDDGLIQNKKEMEST*
Ga0099822_10715712	3300006943	Root Nodules	VKSPLDIKIASFLDVKVPFTKPKEEDDGLIQNEKEMEST*
Ga0099822_10724993	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEIT*
Ga0099822_10771362	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKPKEEDDGLIQNEKEMESK*
Ga0099822_10789602	3300006943	Root Nodules	VKSPLDIKIACYLDVKVLSQSSREEDDGLIQNKKEMES
Ga0099822_10801443	3300006943	Root Nodules	VKSPLDIKIAIYLDVKVLSQSSREEDDGLIENEKEMEST*
Ga0099822_10816521	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTDLMEEDDGLIQNKKEMEGT*
Ga0099822_10821561	3300006943	Root Nodules	MDIKIASYLDVTVPFTKPREEDDGLIQNKKEMERT*
Ga0099822_10826643	3300006943	Root Nodules	VKSPLDIKIANYLDVKVLSQSSREEDDGLIQNKKEMEST*
Ga0099822_10839013	3300006943	Root Nodules	VKFPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEM
Ga0099822_10841761	3300006943	Root Nodules	VKSPLDIKIASYIDVKVPFTKLKEEDDGLIQNKKEMEAHKP*
Ga0099822_10874582	3300006943	Root Nodules	VKSPLDIKIVSYLDVKVPFTKLKEEDDGLIQNKKEMES
Ga0099822_10882232	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTSSREEDDGLIQNKKEMEST*
Ga0099822_10893041	3300006943	Root Nodules	LDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEIT*
Ga0099822_10924912	3300006943	Root Nodules	VKSPLDIKITSYLDVKVLSQNLRDEDDGLIQNKKEMKNT*
Ga0099822_10925121	3300006943	Root Nodules	MKSPLDIKIASYLDVKVPFTKPKEEDDGLIENKMEMEST*
Ga0099822_10962752	3300006943	Root Nodules	VKSPLDIKIACYLDVKVLSQSSREEDDGLIQNKKEM
Ga0099822_10965331	3300006943	Root Nodules	DIKIASYLDVKIPFTKLKEEDDGLIQNKKEMEST*
Ga0099822_10981692	3300006943	Root Nodules	VKSPLDIMIASYLDMKVLSQSSREEDDGLIPNKMEMEST*
Ga0099822_10992512	3300006943	Root Nodules	VKYPLDIKVASYLNVKVLSESSREEDDGLIQNKKEMENT*
Ga0099822_10998662	3300006943	Root Nodules	VKSTLDIKIACYLDVKVPFTKLKEEDDGLIQNKKEMEGT*
Ga0099822_11003921	3300006943	Root Nodules	VKSLLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMES
Ga0099822_11017261	3300006943	Root Nodules	VKSPLDIKIACYLDVKVPFTKLKEEDDGLIQNKKEM
Ga0099822_11021162	3300006943	Root Nodules	VKSPLDIKIASYLDVKVPFTKPKEENDGLIQNKKEMEST*
Ga0099822_11058921	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEMENT*
Ga0099822_11087741	3300006943	Root Nodules	PLGIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEST*
Ga0099822_11093022	3300006943	Root Nodules	VKSSLDIKIASYLDVKVLSQSSREEDDGLIQNEKEMEST*
Ga0099822_11118812	3300006943	Root Nodules	VKSLLDIKIASYLDVKVLSQSSREEDDGLIQNKKEMEST
Ga0099822_11135511	3300006943	Root Nodules	VKSPLDIKIACYLDVKVPFTKPKEEDDVLIQNEKEMEST*
Ga0099822_11155111	3300006943	Root Nodules	PLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMKGT*
Ga0099822_11161212	3300006943	Root Nodules	VKSPLDIKIASYLDVKVLSQSSKEEDDGLIQNKKEME
Ga0099823_100510430	3300006944	Root Nodules	MKSPLDIKIANYLDVNVPFTKLKEEDDGLIQNKKEMEGT*
Ga0099823_10128411	3300006944	Root Nodules	VKSPLDIKIACYLDVKVLSQSSREEDDGLIQNKKEMENT
Ga0099823_102198712	3300006944	Root Nodules	VKSPLNIKIASYLDVKVLSQSLREEDDGLIQNKKEMES
Ga0099823_10275105	3300006944	Root Nodules	VKSALDIKIASYLDVKVPFTKLKEEDDGLIQKKKEM
Ga0099823_10360441	3300006944	Root Nodules	VKSPLGIKIASYLDVKVPFTKLKEEDDGLIQNKKEMEST
Ga0099823_10506185	3300006944	Root Nodules	VKSPLHIKIASYLDVKVPFTKLKEEDDGLIQNKKE
Ga0099823_10515141	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKPREEDDGLIQNKKEMKAHK
Ga0099823_10515326	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNEKEMES
Ga0099823_10548191	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKEMVKM*
Ga0099823_10649753	3300006944	Root Nodules	VKSSLDIKIASYLDVKVLSQSSREEDDGLIQNEKEMENT*
Ga0099823_10687012	3300006944	Root Nodules	VKSPLEIKIASYLDVKVLSQSSREEDDGLIQNKKE
Ga0099823_10717671	3300006944	Root Nodules	VKYPLDIKIASYLDVKVLSQSLREEDDELIQNKKEMEGT*
Ga0099823_10730141	3300006944	Root Nodules	VKSPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEMEGT
Ga0099823_10759992	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKVKEEDDGLIQNKKEM
Ga0099823_10847081	3300006944	Root Nodules	VKSSLDIKIASYLDVKVPFTKPREEDDGLIQNKKEMEGT*
Ga0099823_10866374	3300006944	Root Nodules	VQSPLDIKIASYLDVKVLSQSSKDEDDGLIQNKKEMKST*
Ga0099823_10979884	3300006944	Root Nodules	VKSLLDIKIASYLDVKVPFTKLKEEDDGLIQNEKEIE
Ga0099823_11018412	3300006944	Root Nodules	MIKKAKRNPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEMEST
Ga0099823_11055592	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKPKEKDDGLIQNEKAMEST*
Ga0099823_11065762	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFQSSGEEDDGLIQNKKEMEST*
Ga0099823_11189871	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKPREEDDGLIQNEKEMENT*
Ga0099823_11192722	3300006944	Root Nodules	VKSPLDIKIASYLDVKVLSQSSREEDDGLIQNKKEME
Ga0099823_11205881	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKPREEDDGLIQNKKEMEST
Ga0099823_11216851	3300006944	Root Nodules	VKSPLDIKIASYLDVKVPFTKLKEEDDGLIQNKKETEST*
Ga0099823_11220512	3300006944	Root Nodules	MKSPLDIKIASYLDVKVLSQSSKEEDDGLIENKMEMEST*
Ga0099823_11254252	3300006944	Root Nodules	VKFPLDIKIASYLDVKVLSQSSREEDDGLIQNEKERKAHKPYK
Ga0099823_11340181	3300006944	Root Nodules	VKSPLDIKIVSYLDVKVHFKSSREEDDGLIQNKKEMEST*
Ga0099823_11389342	3300006944	Root Nodules	VKSPLDIKIACYLDVKVLSQSSREEDDGLIQKQKGNGKHI
Ga0099823_11418091	3300006944	Root Nodules	PLDIKIASYLDVKVPFTKLKEEDDGLIQNEKEIEST*
Ga0099823_11474611	3300006944	Root Nodules	VKFPLDINIASYLDVKVPFSQSSREEDDGLIQNKKEMEST*
Ga0214544_10111565	3300021320	Root Nodules	VKSPLDIKIACYLDVKVPLTKLKRRSDGLIQTKKEMEGT
Ga0214544_10168221	3300021320	Root Nodules	VKSPLDIKIANYLDVKVLSQSSREEDDGLIQNKKEMEST
Ga0214544_10222155	3300021320	Root Nodules	VKSPLDIKIASNLDVKVLSQSSREEDDGLIQNKKEMEST
Ga0214544_10227478	3300021320	Root Nodules	VKSPLDIKIASYPDVKVPFTSSREEDDVLIQNKKEMEST
Ga0214544_10240803	3300021320	Root Nodules	VKSALDIKIASYLDVKLPFTSSREEDDGLIQNKKEMEST
Ga0214544_10252111	3300021320	Root Nodules	VKFPLDIKIASYLDVKVPSQSSREEDDGLTQNKKEMEST
Ga0214544_10306921	3300021320	Root Nodules	VKSPLDIKIASYLDVKVPFTSSREEDDGLIQNKKEMEST
Ga0214544_10335961	3300021320	Root Nodules	VKSPLDIKIASYLDVKVPFSQSSKEEDDGLIQNEKEMEST
Ga0214542_10064441	3300021321	Root Nodules	VKSPLDIKIASYLDMKVPFTSSREEDDGLIQNKKERENT
Ga0209589_10183921	3300027357	Root Nodules	VKSPLDIKIAGYLDVKVHFTREEDDRLIQKKKEMEST

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079667

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences