NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F079728

Metagenome Family F079728

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F079728
Family Type Metagenome
Number of Sequences 115
Average Sequence Length 86 residues
Representative Sequence ITPRFPRPPLWIAVGVVALLWRRPRGWPTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA
Number of Associated Samples 99
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.91 %
% of genes near scaffold ends (potentially truncated) 86.96 %
% of genes from short scaffolds (< 2000 bps) 82.61 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (86.957 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(16.522 % of family members)
Environment Ontology (ENVO) Unclassified
(39.130 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(51.304 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 51.82%    β-sheet: 0.00%    Coil/Unstructured: 48.18%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF13231PMT_2 42.61
PF00535Glycos_transf_2 7.83
PF01061ABC2_membrane 4.35
PF02709Glyco_transf_7C 3.48
PF14524Wzt_C 0.87
PF06841Phage_T4_gp19 0.87
PF13489Methyltransf_23 0.87
PF13704Glyco_tranf_2_4 0.87


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms86.96 %
UnclassifiedrootN/A13.04 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908008|FWIREl_GJ4R3DH02HD9TAAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium506Open in IMG/M
2228664021|ICCgaii200_c0929744All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium623Open in IMG/M
2228664021|ICCgaii200_c0934230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1236Open in IMG/M
3300000953|JGI11615J12901_10510985All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium679Open in IMG/M
3300004114|Ga0062593_100083397All Organisms → cellular organisms → Bacteria2175Open in IMG/M
3300004479|Ga0062595_101505354All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria621Open in IMG/M
3300004480|Ga0062592_101239609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium700Open in IMG/M
3300005162|Ga0066814_10034610All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300005329|Ga0070683_100149465All Organisms → cellular organisms → Bacteria2214Open in IMG/M
3300005329|Ga0070683_100284294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1574Open in IMG/M
3300005337|Ga0070682_100788563All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria771Open in IMG/M
3300005354|Ga0070675_100032967All Organisms → cellular organisms → Bacteria4196Open in IMG/M
3300005356|Ga0070674_101790127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium557Open in IMG/M
3300005365|Ga0070688_100946717All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria681Open in IMG/M
3300005441|Ga0070700_100835693All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium745Open in IMG/M
3300005457|Ga0070662_100702614All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei856Open in IMG/M
3300005466|Ga0070685_11160531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria586Open in IMG/M
3300005468|Ga0070707_101492065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium643Open in IMG/M
3300005518|Ga0070699_102115934All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
3300005539|Ga0068853_102255177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium528Open in IMG/M
3300005547|Ga0070693_101494709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium528Open in IMG/M
3300005564|Ga0070664_100393302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1267Open in IMG/M
3300005564|Ga0070664_101567467All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei624Open in IMG/M
3300006058|Ga0075432_10066633All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1289Open in IMG/M
3300006852|Ga0075433_11216323All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium654Open in IMG/M
3300009100|Ga0075418_11250663All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium805Open in IMG/M
3300009162|Ga0075423_10932712All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium921Open in IMG/M
3300009162|Ga0075423_11139001All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium831Open in IMG/M
3300009177|Ga0105248_11474919All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium770Open in IMG/M
3300009545|Ga0105237_12721175All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium506Open in IMG/M
3300009551|Ga0105238_12368947All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium566Open in IMG/M
3300009792|Ga0126374_11595815All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300012093|Ga0136632_10507526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium535Open in IMG/M
3300012483|Ga0157337_1038742All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium518Open in IMG/M
3300012681|Ga0136613_10097869All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1680Open in IMG/M
3300012681|Ga0136613_10605741All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300012681|Ga0136613_10620686All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium580Open in IMG/M
3300012684|Ga0136614_10757488All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300012684|Ga0136614_11230378All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300012897|Ga0157285_10188109All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium641Open in IMG/M
3300012900|Ga0157292_10171707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium706Open in IMG/M
3300012943|Ga0164241_11447170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium505Open in IMG/M
3300012951|Ga0164300_11132691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
3300012985|Ga0164308_10481958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1034Open in IMG/M
3300013100|Ga0157373_11239231All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium563Open in IMG/M
3300013297|Ga0157378_12359443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium584Open in IMG/M
3300013307|Ga0157372_10578114All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1309Open in IMG/M
3300013307|Ga0157372_12945422All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium545Open in IMG/M
3300013308|Ga0157375_10865327All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1050Open in IMG/M
3300013308|Ga0157375_11382295All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium829Open in IMG/M
3300014267|Ga0075313_1152053All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium595Open in IMG/M
3300014325|Ga0163163_13079680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium520Open in IMG/M
3300014745|Ga0157377_10529501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium829Open in IMG/M
3300014745|Ga0157377_10695911All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium737Open in IMG/M
3300014969|Ga0157376_13126808All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium501Open in IMG/M
3300015371|Ga0132258_10437993All Organisms → cellular organisms → Bacteria3256Open in IMG/M
3300015371|Ga0132258_11011778All Organisms → cellular organisms → Bacteria2100Open in IMG/M
3300017787|Ga0183260_10905297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium547Open in IMG/M
3300017789|Ga0136617_11474953All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium507Open in IMG/M
3300017965|Ga0190266_10556826All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300018432|Ga0190275_10671849All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1090Open in IMG/M
3300018469|Ga0190270_10635929All Organisms → cellular organisms → Bacteria1047Open in IMG/M
3300019361|Ga0173482_10338612All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium677Open in IMG/M
3300019487|Ga0187893_10930448Not Available517Open in IMG/M
3300019884|Ga0193741_1096429All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300020003|Ga0193739_1046970All Organisms → cellular organisms → Bacteria1113Open in IMG/M
3300025901|Ga0207688_10110670All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1594Open in IMG/M
3300025903|Ga0207680_11150739All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium554Open in IMG/M
3300025909|Ga0207705_11542038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium502Open in IMG/M
3300025917|Ga0207660_10073468All Organisms → cellular organisms → Bacteria2493Open in IMG/M
3300025926|Ga0207659_10751912All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium836Open in IMG/M
3300025933|Ga0207706_10803937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium799Open in IMG/M
3300025935|Ga0207709_10731079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium794Open in IMG/M
3300025935|Ga0207709_11353789All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300025936|Ga0207670_11501350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium573Open in IMG/M
3300026023|Ga0207677_10248715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1443Open in IMG/M
3300026035|Ga0207703_11052267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium781Open in IMG/M
3300026041|Ga0207639_10548964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1061Open in IMG/M
3300026075|Ga0207708_11266474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium646Open in IMG/M
3300026111|Ga0208291_1057147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium697Open in IMG/M
3300026116|Ga0207674_10640553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1026Open in IMG/M
3300026118|Ga0207675_100861603All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium921Open in IMG/M
3300026142|Ga0207698_11108947All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium804Open in IMG/M
3300026933|Ga0207578_1010407Not Available672Open in IMG/M
3300027650|Ga0256866_1225647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium504Open in IMG/M
(restricted) 3300027799|Ga0233416_10006976All Organisms → cellular organisms → Bacteria → Proteobacteria3649Open in IMG/M
3300027909|Ga0209382_10045520All Organisms → cellular organisms → Bacteria5243Open in IMG/M
3300028596|Ga0247821_11155570All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium524Open in IMG/M
3300028596|Ga0247821_11253577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium505Open in IMG/M
3300028710|Ga0307322_10213752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium528Open in IMG/M
3300028768|Ga0307280_10374912All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300028782|Ga0307306_10202122Not Available569Open in IMG/M
3300028784|Ga0307282_10435847All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300030006|Ga0299907_11208168All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium542Open in IMG/M
3300030336|Ga0247826_10267531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1209Open in IMG/M
3300030336|Ga0247826_10891421All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium701Open in IMG/M
3300031576|Ga0247727_10480326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium973Open in IMG/M
3300031847|Ga0310907_10740797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium546Open in IMG/M
3300031873|Ga0315297_10838581All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium765Open in IMG/M
3300032013|Ga0310906_10497238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium824Open in IMG/M
3300032401|Ga0315275_10497444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1366Open in IMG/M
3300033412|Ga0310810_10723720All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium919Open in IMG/M
3300033550|Ga0247829_11220534All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium623Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil8.70%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand6.96%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.22%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere5.22%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere5.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.35%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.35%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.35%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere3.48%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.61%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands2.61%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.61%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.74%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.87%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.87%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.87%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.87%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908008Soil microbial communities from sample at FACE Site Metagenome WIR_Elev2EnvironmentalOpen in IMG/M
2228664021Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005162Soil and rhizosphere microbial communities from Laval, Canada - mgLABEnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300012093Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)EnvironmentalOpen in IMG/M
3300012483Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610Host-AssociatedOpen in IMG/M
3300012681Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)EnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012900Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014267Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1EnvironmentalOpen in IMG/M
3300014271Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017787Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)EnvironmentalOpen in IMG/M
3300017789Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)EnvironmentalOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018432Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300019884Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2EnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300022893Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4EnvironmentalOpen in IMG/M
3300025559Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025792Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025917Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026111Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026933Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10K4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027650Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeqEnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028710Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380EnvironmentalOpen in IMG/M
3300028768Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119EnvironmentalOpen in IMG/M
3300028782Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031873Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
FWIREl_084940402124908008SoilPGLGDGDPRPDHAALPRPPLWIVVGIVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSA
ICCgaii200_092974412228664021SoilEILNRITPRFPRPPLWIAVGAIALVWRRPRGWRAIVVLWSAATAVLLIHASSQGLAPEFSLPLYPLFIVTAL
ICCgaii200_093423012228664021SoilFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE
JGI11615J12901_1051098513300000953SoilPPLWLAAGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE*
Ga0062593_10008339713300004114SoilELPSRSGQTWVTEILNRITPRFPRPPLWLAVGAIALVWRRPRGWRAIVVLWSAAAAVLLVHAVSQGLAPEFALPLYPLFIVTALGALAGERSAPPSPT*
Ga0062589_10082357023300004156SoilLWLAVGVVAVLVRRPRGRQTILALWLSAGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPRDGSSSGMSAG*
Ga0062595_10150535413300004479SoilLPSRSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGQARRSSA*
Ga0062592_10123960923300004480SoilWVTGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE*
Ga0066814_1003461013300005162SoilFPRPPLWIAVGAVGLLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA*
Ga0070683_10014946533300005329Corn RhizosphereVGVVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSA*
Ga0070683_10028429423300005329Corn RhizosphereSRAGKAWVTGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE*
Ga0070682_10078856313300005337Corn RhizosphereFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLLIHAASQGIAPEFALPLYPLFIVTALAALAGDREPARLSSG*
Ga0070661_10046423123300005344Corn RhizosphereTPRFPRPPLWLAVGAVALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALGGERGGPASRACVDSTQGSSA*
Ga0070675_10003296753300005354Miscanthus RhizosphereWVTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS*
Ga0070674_10179012723300005356Miscanthus RhizosphereTEILNRITPRLPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS*
Ga0070688_10094671723300005365Switchgrass RhizosphereGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLLIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSA*
Ga0070700_10083569313300005441Corn, Switchgrass And Miscanthus RhizosphereVVALLWRRPRGWPTILVLWGAAAAVLLIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSG*
Ga0070662_10070261423300005457Corn RhizosphereRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE*
Ga0070685_1116053113300005466Switchgrass RhizosphereGRQWVTEILDRITPRFPRPPLWIAAGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA*
Ga0070707_10149206513300005468Corn, Switchgrass And Miscanthus RhizosphereFPRPPLWIAVGVVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSAWCVPPR*
Ga0070699_10211593423300005518Corn, Switchgrass And Miscanthus RhizosphereRFPRPPLWIAVGVVALLWRRPRGWPTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA*
Ga0068853_10225517723300005539Corn RhizosphereILNRITPRFPRPPLWLAVGVIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALGGERGGPASRACVDSTQGSSA*
Ga0070693_10149470923300005547Corn, Switchgrass And Miscanthus RhizosphereLNRITPRFPRPPLWLAVGVIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALGGERGGPRHDSPSAA*
Ga0070664_10039330223300005564Corn RhizosphereRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS*
Ga0070664_10156746723300005564Corn RhizosphereRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSAE*
Ga0068857_10079962613300005577Corn RhizosphereRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS*
Ga0075432_1006663323300006058Populus RhizosphereRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA*
Ga0075433_1121632313300006852Populus RhizosphereTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWPTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA*
Ga0075418_1125066323300009100Populus RhizosphereRAWDAELPSRKGVSFVPELLNRITPRFPTPILWIVVGLVALVVRRPRGSRTILVLWGSAFLVLLIHAASQGVAPEFALPLYPVFIVTAL*
Ga0075423_1093271223300009162Populus RhizosphereGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE*
Ga0075423_1113900123300009162Populus RhizosphereDAELPSRSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWPTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA*
Ga0105248_1147491913300009177Switchgrass RhizosphereRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIDAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA*
Ga0105237_1272117513300009545Corn RhizosphereRSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA*
Ga0105238_1236894713300009551Corn RhizosphereQNWVTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS*
Ga0126374_1159581523300009792Tropical Forest SoilGVAFVPEVLNRITPRFPRPPLWLAVGLVALIVRRPAGWRTILVLWVGSFLVLLIHAASQGVAPEFALPLYPVFIVTALGALAGDRTPAGSLASAR*
Ga0136632_1050752613300012093Polar Desert SandSREGVDIVTELLNRVTPRFPRPPFWLALGLVGLVLRRPRDWRLIVALWISAGFVLLVHAASQGVTPEFALPLYPVFIVTALGALAGEPHRATENLALDSSRVV*
Ga0157337_103874223300012483Arabidopsis RhizosphereWIAVGVVALVWRRPRGWQTILVLWAAAAAVLLIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSG*
Ga0136613_1009786923300012681Polar Desert SandPRFPRPPFWLALGLIGLVVRRPRDWRTIVVLWVAAGLVLLIHAASQGVAPEFALPLYPVFIVAALGALAGARTRAAHD*
Ga0136613_1060574113300012681Polar Desert SandRVTPRYPRPPFWLALGLVGLVFRRPRGWRTILALWASAALVLLIHAASQGVAPEFALPLYPVFIVTALGAIAGESRLHAQRSVLGAG*
Ga0136613_1062068613300012681Polar Desert SandREGVDVVTEVLNRVTPRFPRPPFWLALGLIGLVFRRPRDWRIIVALWICAALVLLIHAASQGVAPEFALPLYPVFIVTALGALGGARIPRAKSPTE*
Ga0136614_1075748813300012684Polar Desert SandFPRPPFWLALGLVGLVFRRPRGWRTIVTLWACAALVLLIHAASQGVAPEFALPLYPVFIVTALGAIAGESRARTHRSVLGPG*
Ga0136614_1123037813300012684Polar Desert SandLAVGAIALLWRRPRGSRTIVVLWAASAAVLLIHAGSQGVAPEFALPLYPVFIVTALGAVGGERQARKGRHLTRGSSGRGARSRRPRR*
Ga0157285_1018810923300012897SoilFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLLIHAASQGIAPEFALPLYPLFIVTALAALAGDRGPARLSSG*
Ga0157292_1017170713300012900SoilPRPPLWIAVSVVALLWRRPRGWPTILVLWGAAAAVLLIHAASQGVAPEFALPLYPLFIVTALAALAGDREPARLSSG*
Ga0157306_1035449823300012912SoilAVLVRRPRGRQTILALWLSAGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPRDGSSSGMSAG*
Ga0164241_1144717013300012943SoilGKSWVTGILNRITPRFPRPPLWLAVGVIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALGGERGGSPPAT*
Ga0164300_1113269113300012951SoilQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALGALAGDRSRGASVRDEM*
Ga0164308_1048195823300012985SoilILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA*
Ga0157373_1123923123300013100Corn RhizosphereWIAVGVVALLWRRPRGWPTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA*
Ga0157378_1235944323300013297Miscanthus RhizosphereAGILNRITPRFPRPPLWLAVGAVALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEVSLPLYPLFIVTALGALGGERGGPASRACVDSTQGSSA*
Ga0157372_1057811423300013307Corn RhizosphereWVTEILDRITPRFPRPPLWIAVGVVALLWRRPGGWQTIFVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRSPARRSSA*
Ga0157372_1294542223300013307Corn RhizosphereAVGVVALLWRRPRGWQTILVLCGAAAAVLLIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSA*
Ga0157375_1086532713300013308Miscanthus RhizosphereRTGQNWVTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS*
Ga0157375_1138229513300013308Miscanthus RhizosphereGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPTGISSR*
Ga0075313_115205313300014267Natural And Restored WetlandsRITPRFPTPVLWLAVGMVALVWRRPRGWRTILLLWLAAFLVLLIHAASQGVAPEFALPVYPVFIVTALCALAGDRGGQPGRQLASAG*
Ga0075326_104161213300014271Natural And Restored WetlandsRITPRFPRPPLWLAVGIVALVVRRPRGRQTILALWLSAGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPKDGSPSGMSAG*
Ga0163163_1307968023300014325Switchgrass RhizospherePSRSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLLIHAASQGIAPEFALPLYPLFIVTALAALAGDREPARLSSG*
Ga0157377_1052950133300014745Miscanthus RhizosphereGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE*
Ga0157377_1069591123300014745Miscanthus RhizosphereLPSRSGQQWVTEILDRITPRFPRPPLWIAVGVVALIWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA*
Ga0157376_1312680823300014969Miscanthus RhizosphereVGVIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALGGERGGPRHDSPSAA*
Ga0132258_1043799343300015371Arabidopsis RhizosphereVGAVALVWRRPRGWQTILVLWAAAAAVLLIHAASQGIAPEFALPLYPVFIVTALAALAGDRGPTRISAR*
Ga0132258_1101177833300015371Arabidopsis RhizosphereTEILDRITPRFPRPPLWIAVGVVALVWRRPREWRTILVLWSAAAAVLLIHAASQGVAPEFALPLYPLFIVTALGALAGERSTGVVARKDT*
Ga0183260_1090529723300017787Polar Desert SandWDADLPARSGVDIVTELLNRITPRFPRPPFWLALGAIGLVVRRPRDWRLIVVLWVAAGLVLLIHAASQGVAPEFALPLYPVFILTALGALGGERVRPAHE
Ga0136617_1147495323300017789Polar Desert SandPRPPFWLALGLVGLVLRRPRDWRLIVALWIAAGLVLLIHAASQGVTPEFALPLYPVFIVTALGALAGERRVRRESASL
Ga0190266_1055682613300017965SoilLPSREGANVVPELLNRITPRYPTPVLWLAVGVVGLLWRRPRGWRTIVLLWVAAFLVLLIHAASQGVAPEFALPVYPVFIVTALCALAGDRGGQPGRQLASSG
Ga0190275_1067184913300018432SoilLWLAVGVVALAWRRPRGWRTIVVLWAAAAAVLLVHAVSQGVAPEFALPLYPLFIVTALGALAGERDTRRTAAR
Ga0190270_1063592913300018469SoilTREGSSFVPEILNRITPRYPTPVLWLVVGAVALVWRRPRGWPTIVLLWVAAFLVLLIHAASQGVAPEFALPVYPVFIVTVLCALAGERGPRTQLASTE
Ga0173482_1033861213300019361SoilLNRITPRFPRPPLWLAVGAVALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALGGERGGPASRACVDSTQGSSA
Ga0187893_1093044823300019487Microbial Mat On RocksMKTGPQTPWMLLVGAVALVARRPRDWRTILLLWTAGFLVLVIHAASQGVAPEFALPVYPLFIVGALGAVAGDRGPRPQLASTA
Ga0193741_109642913300019884SoilILNRVTPRFPTPPLWLAVGVVALVVRRPRDWPTILLLWTAAFLVLLVHAASQGVAPEFALPLYPIFIVTALGALAGDRKGQPDRQLASTG
Ga0193739_104697013300020003SoilRFPTPVLWLAVGVVALISRRPRGWRAIVLLWLAAFLVLLVHAASQGVAPEFALPLYPVFIVTALCAVAGERGRERS
Ga0247787_101634013300022893SoilAVALVVRRPRGTRTVLALWLAAGLVLLVHAVSQGVAPEFALPLYPVFIVTALVAVAGDLPRRGEMSASGMSSR
Ga0210087_100785513300025559Natural And Restored WetlandsWLAVGIVALVVRRPRGRQTILALWLSSGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPKDGSPSGMSAG
Ga0210143_103658413300025792Natural And Restored WetlandsFPRPPLWLAVGIVALVVRRPRGRQTILALWLSSGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPKDGSPSGMSAG
Ga0207688_1011067023300025901Corn, Switchgrass And Miscanthus RhizosphereSRAGKAWVTGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSAE
Ga0207680_1115073913300025903Switchgrass RhizospherePLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA
Ga0207705_1154203823300025909Corn RhizosphereGVVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALASLAGDRGPARRSSA
Ga0207660_1007346813300025917Corn RhizospherePPLWIAAGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA
Ga0207659_1075191213300025926Miscanthus RhizosphereWPTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS
Ga0207706_1080393723300025933Corn RhizosphereGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE
Ga0207709_1073107913300025935Miscanthus RhizosphereLDRITPRFPRPPLWIAVGVVALIWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA
Ga0207709_1135378913300025935Miscanthus RhizosphereDRITPRFPRPPLWIAVGVVALIWRRPRGWQTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA
Ga0207670_1150135013300025936Switchgrass RhizosphereSRSGQAWVTELLDRITPRFPRPPLWIAVGVVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSA
Ga0207677_1024871523300026023Miscanthus RhizosphereITPRFPRPPLWIAVGVVALIWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGQVRRSSA
Ga0207703_1105226713300026035Switchgrass RhizospherePSRSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWPTILVLWGAAAAVLLIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARLSSG
Ga0207639_1054896423300026041Corn RhizospherePSRTGQNWVTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS
Ga0207708_1126647423300026075Corn, Switchgrass And Miscanthus RhizosphereAELPSRAGKAWVTGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE
Ga0208291_105714723300026111Natural And Restored WetlandsLLNRVTPRYPRPPLWLAVGAIALVWRRPRGTRTILVLWTAAALVLLVHAVSQGVAPEFALPVYPMFVVTALGALAGERRSPAGVSASGMSAR
Ga0207674_1064055313300026116Corn RhizosphereGQNWVTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS
Ga0207675_10086160323300026118Switchgrass RhizosphereLWIAVGAVALVWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGQARRSSA
Ga0207698_1110894713300026142Corn RhizosphereILNRITPRFPRPPLWIAVGVVALLWRRPRGWATILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA
Ga0207578_101040723300026933SoilVSSREKLFAALAAVGLIVGIVALVWRRPRGWQTILVLWGAAAAVLLIHAASQGIAPEFALPLYPLFIVTALAALAGDRGPARLSAG
Ga0256866_122564723300027650SoilAWDALLPARDGVDLVTEFLNRVTPRFPRPPFWLALGLIGLVVRRPRDWRLIVTLWISAGLVLLIHAASQGVTPEFALPLYPVFIVTALGAIAGARRQQDPPLDSGTVV
(restricted) Ga0233416_1000697613300027799SedimentITPRFPRPPLWLAVGLVALLVRRPAGWRTIVVLWGGSFLVLLIHAASQGVAPEFALPVYPVFVVTALGAVAGERRPPRPLASSG
Ga0209382_1004552013300027909Populus RhizospherePRFPRPPLWLAVGLVALVVRRPARWRIIVVLWAAAFLVLLVHAASQGVAPEFALPLYPIFIVTALGALTGSRGHPA
Ga0268265_1207470623300028380Switchgrass RhizosphereRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS
Ga0247821_1115557023300028596SoilELPSRTGQNWVTEILNRITPRFPRPPLWIAVGAIALLWRRPRGWRAIVVLWSAAAAVLLIHAASQGLAPEFSLPLYPLFIVTALGALAGERAGSSARACVDSTQAASS
Ga0247821_1125357713300028596SoilELPSRSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA
Ga0307322_1021375213300028710SoilEWDAELPSRTGVAFVPEVLNRITPRFPRPPLWLAVGLVALIVRRPAAWRTMVVLWVGAFLVLLVHAASQGVAPEFALPLYPVFIVTALGALAGDRKPAGSLASTG
Ga0307280_1037491223300028768SoilTGVAFVPEILNRITPRFPRPPLWLAAGLVALIVRRTAGWRTIVVLWAGAFLVLLVHAASQGVAPEFALPLYPVFIVTALGALAGERTPPGSLASAG
Ga0307306_1020212213300028782SoilITPRFPRPPLWLAVGLIAMILRRPAGWRTMVVLWVGAFLVLLVHAASQGVAPEFALPLYPVFIVTALGALAGDRKPAGSLASTG
Ga0307282_1043584723300028784SoilWLAVGLVALVVRRPAGWRTIVVLWAGAFLVLLVHAASQGVAPEFALPLYPVFIVTALGALAGDRKPAGSLASTG
Ga0299907_1120816813300030006SoilSSVPEVLNRITPRFPRPPLWLAVGVVALAVRRPRDWRTIVVLWLAAGLVLLIHAASQGVAPEFALPLYPVFIVTALGALAGERRGARPSAT
Ga0247826_1010873213300030336SoilLWLAVGVVAVLVRRPRGRQTILALWLSAGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPRDGSSSGMSAG
Ga0247826_1026753113300030336SoilAELPSRTGQAWSTEILNRITPRFPRPPLWLAVGVVALVWRRPRGWRTIVVLWTAAAAVLLIHAASQGVAPEFALPLYPVFIVTALGALVGVRGTRGAATG
Ga0247826_1089142123300030336SoilVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRRPARRSSA
Ga0247727_1048032613300031576BiofilmVGLVALVWRRPRGWRTILILWAGAFLVLLIHAASQGVAPEFALPLYPVFIVTALAAVAGDRGPREDLSSAGRSAR
Ga0310907_1074079713300031847SoilFPRPPLWLAVGLVALVWRRPLGWRTIVVLWASAAAVLLIHAVSQGVAPEFALPLYPLFIVTALGALAGDRGTQRPAAG
Ga0315297_1083858113300031873SedimentVAFVPEILNRVTPRFPRPPLWLAVGLVALLWRRPRGWRTIVVLWVGAFLVLLVHAASQGVAPEFALPLYPVFIVTALAALAGDRGPPGPQSSES
Ga0310906_1049723823300032013SoilITPRFPRPPLWIAVGVVALLWRRPRGWPTIVVLWGAAAAVLGIHAASQGVAPEFALPLYPLFIVTALAALAGDRGPARRSSA
Ga0310890_1148829413300032075SoilRRPRGTRTVLALWLAAGLVLFVHAASQGVAPEFALPLYPVFIVTALVAVAGELPRRGEMSASALSSR
Ga0315275_1049744423300032401SedimentRITPRFPRPPLWLAVGLVALLWRRPRGWRTIVVLWVGAFLVLLVHAASQGVAPEFALPLYPVFIVTALAALAGDRGPPGPQSSES
Ga0310810_1072372013300033412SoilAWDAELPSRAGKAWVTGILNRITPRFPRPPLWLAVGLVALVWRRPRDWRTILVLWGAALAVLLIHAASQGLAPEFALPLYPVFIVTAVGALAGERSPVRSTE
Ga0247829_1014624113300033550SoilALLVRRPRGRQTILALWLSAGLVLLVHAVSQGVAPEFALPVYPVFLVTALVALAGERASPRDGSSSGMSAG
Ga0247829_1122053413300033550SoilSGQQWVTEILDRITPRFPRPPLWIAVGVVALLWRRPRGWQTILVLWGAAAAVLGIHAASQGIAPEFALPLYPLFILTALAALAGDRGPARHSSA

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.