Metagenome / Metatranscriptome Family F079825

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079825
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	46 residues
Representative Sequence	MAQLALYETEIVDMPQVFLPFATDAKGQTLYEKMVEGKFLLGDGRE
Number of Associated Samples	86
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	38.39 %
% of genes near scaffold ends (potentially truncated)	32.17 %
% of genes from short scaffolds (< 2000 bps)	89.57 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.087 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (46.087 % of family members)
Environment Ontology (ENVO)	Unclassified (52.174 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (73.043 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.11% β-sheet: 2.70% Coil/Unstructured: 89.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF09926	DUF2158	4.35
PF01078	Mg_chelatase	1.74
PF13551	HTH_29	0.87
PF01548	DEDD_Tnp_IS110	0.87
PF13565	HTH_32	0.87
PF13546	DDE_5	0.87
PF00665	rve	0.87
PF01609	DDE_Tnp_1	0.87
PF02371	Transposase_20	0.87
PF08359	TetR_C_4	0.87
PF04014	MazE_antitoxin	0.87
PF01797	Y1_Tnp	0.87
PF13610	DDE_Tnp_IS240	0.87
PF01471	PG_binding_1	0.87
PF13358	DDE_3	0.87
PF12762	DDE_Tnp_IS1595	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.74
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.87
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.87
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	0.87
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	0.87
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.87
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.87
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	0.87
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.87
COG4584	Transposase	Mobilome: prophages, transposons [X]	0.87
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.87
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.87
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
All Organisms	root	All Organisms	33.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
cellular organisms	root	All Organisms → cellular organisms	32.17 %
Viruses	superkingdom	All Organisms → Viruses	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.30 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	8.70 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.87 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	8.70 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.48 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.87 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.87 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	8.70 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.87 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	8.70 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.87 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.87 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.87 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Candidatus Kerfeldbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria	8.70 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.87 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.09 %
Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	8.70 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.61 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.74 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	0.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.87 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.87 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0323254	Not Available	539	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100759696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1408	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101183066	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	620	Open in IMG/M
3300000559\|F14TC_100211112	Not Available	1865	Open in IMG/M
3300002908\|JGI25382J43887_10165973	Not Available	1103	Open in IMG/M
3300004281\|Ga0066397_10110689	Not Available	587	Open in IMG/M
3300005180\|Ga0066685_10348128	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300005294\|Ga0065705_10187083	All Organisms → cellular organisms → Bacteria	1499	Open in IMG/M
3300005294\|Ga0065705_10242805	Not Available	1188	Open in IMG/M
3300005294\|Ga0065705_10264226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1130	Open in IMG/M
3300005332\|Ga0066388_104058000	Not Available	746	Open in IMG/M
3300005338\|Ga0068868_100902138	Not Available	803	Open in IMG/M
3300005441\|Ga0070700_100879938	Not Available	728	Open in IMG/M
3300005445\|Ga0070708_101811084	Not Available	566	Open in IMG/M
3300005552\|Ga0066701_10898749	Not Available	525	Open in IMG/M
3300005713\|Ga0066905_101668045	Not Available	585	Open in IMG/M
3300005719\|Ga0068861_100378514	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300005764\|Ga0066903_102822705	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300005764\|Ga0066903_104426058	Not Available	750	Open in IMG/M
3300005843\|Ga0068860_100070274	All Organisms → cellular organisms → Bacteria	3328	Open in IMG/M
3300005937\|Ga0081455_10000195	All Organisms → cellular organisms → Bacteria	77088	Open in IMG/M
3300006049\|Ga0075417_10113598	Not Available	1238	Open in IMG/M
3300006049\|Ga0075417_10214096	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300006800\|Ga0066660_11528424	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300006847\|Ga0075431_100477685	Not Available	1239	Open in IMG/M
3300006880\|Ga0075429_100345481	Not Available	1302	Open in IMG/M
3300006880\|Ga0075429_100568239	Not Available	994	Open in IMG/M
3300006904\|Ga0075424_100182194	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	2228	Open in IMG/M
3300007255\|Ga0099791_10304631	Not Available	760	Open in IMG/M
3300007255\|Ga0099791_10343139	Not Available	715	Open in IMG/M
3300007258\|Ga0099793_10118057	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1238	Open in IMG/M
3300007258\|Ga0099793_10199105	Not Available	960	Open in IMG/M
3300007265\|Ga0099794_10279027	Not Available	864	Open in IMG/M
3300007265\|Ga0099794_10364209	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300009012\|Ga0066710_101250078	Not Available	1151	Open in IMG/M
3300009038\|Ga0099829_10415480	Not Available	1113	Open in IMG/M
3300009038\|Ga0099829_11315820	Not Available	597	Open in IMG/M
3300009089\|Ga0099828_11221034	Not Available	666	Open in IMG/M
3300009090\|Ga0099827_10250157	All Organisms → cellular organisms → Bacteria	1489	Open in IMG/M
3300009090\|Ga0099827_10273346	Not Available	1425	Open in IMG/M
3300009090\|Ga0099827_10289803	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300009090\|Ga0099827_10367654	All Organisms → Viruses → Predicted Viral	1225	Open in IMG/M
3300009090\|Ga0099827_10545005	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	998	Open in IMG/M
3300009090\|Ga0099827_11031010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	714	Open in IMG/M
3300009100\|Ga0075418_10053974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4304	Open in IMG/M
3300009143\|Ga0099792_10950944	Not Available	571	Open in IMG/M
3300009147\|Ga0114129_11357734	Not Available	879	Open in IMG/M
3300009162\|Ga0075423_13059987	Not Available	512	Open in IMG/M
3300010043\|Ga0126380_10292230	Not Available	1154	Open in IMG/M
3300010304\|Ga0134088_10453004	Not Available	629	Open in IMG/M
3300010333\|Ga0134080_10458322	Not Available	599	Open in IMG/M
3300010362\|Ga0126377_10860598	Not Available	968	Open in IMG/M
3300010362\|Ga0126377_12123164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	638	Open in IMG/M
3300011269\|Ga0137392_11046954	Not Available	670	Open in IMG/M
3300011270\|Ga0137391_11508198	Not Available	517	Open in IMG/M
3300011271\|Ga0137393_11673275	Not Available	525	Open in IMG/M
3300012096\|Ga0137389_11022857	Not Available	708	Open in IMG/M
3300012189\|Ga0137388_11544360	Not Available	600	Open in IMG/M
3300012198\|Ga0137364_11482850	Not Available	500	Open in IMG/M
3300012199\|Ga0137383_11003135	Not Available	608	Open in IMG/M
3300012204\|Ga0137374_10045271	Not Available	4600	Open in IMG/M
3300012205\|Ga0137362_10178732	Not Available	1823	Open in IMG/M
3300012205\|Ga0137362_10358330	Not Available	1263	Open in IMG/M
3300012205\|Ga0137362_10423457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1153	Open in IMG/M
3300012205\|Ga0137362_11636562	Not Available	531	Open in IMG/M
3300012206\|Ga0137380_10929195	Not Available	746	Open in IMG/M
3300012207\|Ga0137381_11572665	Not Available	549	Open in IMG/M
3300012211\|Ga0137377_10429005	Not Available	1260	Open in IMG/M
3300012211\|Ga0137377_11205912	Not Available	687	Open in IMG/M
3300012349\|Ga0137387_10340670	All Organisms → Viruses → Predicted Viral	1085	Open in IMG/M
3300012361\|Ga0137360_10357796	Not Available	1223	Open in IMG/M
3300012362\|Ga0137361_10303191	Not Available	1462	Open in IMG/M
3300012362\|Ga0137361_10476394	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	1146	Open in IMG/M
3300012362\|Ga0137361_10836272	Not Available	837	Open in IMG/M
3300012362\|Ga0137361_11099817	Not Available	716	Open in IMG/M
3300012363\|Ga0137390_10497744	Not Available	1193	Open in IMG/M
3300012363\|Ga0137390_11031371	Not Available	774	Open in IMG/M
3300012683\|Ga0137398_10687473	Not Available	710	Open in IMG/M
3300012685\|Ga0137397_11362838	Not Available	500	Open in IMG/M
3300012904\|Ga0157282_10182835	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300012917\|Ga0137395_11298014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	503	Open in IMG/M
3300012918\|Ga0137396_10595933	Not Available	817	Open in IMG/M
3300012922\|Ga0137394_11455680	Not Available	545	Open in IMG/M
3300012930\|Ga0137407_10069112	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2936	Open in IMG/M
3300012930\|Ga0137407_10078511	All Organisms → cellular organisms → Bacteria	2774	Open in IMG/M
3300012975\|Ga0134110_10377494	Not Available	625	Open in IMG/M
3300013306\|Ga0163162_12240003	Not Available	627	Open in IMG/M
3300013308\|Ga0157375_12079203	Not Available	676	Open in IMG/M
3300014968\|Ga0157379_10383199	Not Available	1290	Open in IMG/M
3300014968\|Ga0157379_11700279	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	618	Open in IMG/M
3300015264\|Ga0137403_10201360	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	1923	Open in IMG/M
3300015371\|Ga0132258_12708582	Not Available	1237	Open in IMG/M
3300018053\|Ga0184626_10110925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1164	Open in IMG/M
3300018433\|Ga0066667_11208863	Not Available	658	Open in IMG/M
3300019356\|Ga0173481_10070503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1263	Open in IMG/M
3300021086\|Ga0179596_10558256	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	581	Open in IMG/M
3300025910\|Ga0207684_10323417	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300025918\|Ga0207662_10904731	Not Available	625	Open in IMG/M
3300025961\|Ga0207712_10018609	All Organisms → cellular organisms → Bacteria	4527	Open in IMG/M
3300026297\|Ga0209237_1237769	Not Available	561	Open in IMG/M
3300027873\|Ga0209814_10091875	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300027873\|Ga0209814_10291138	Not Available	710	Open in IMG/M
3300027882\|Ga0209590_10180840	Not Available	1325	Open in IMG/M
3300027882\|Ga0209590_10349152	Not Available	953	Open in IMG/M
3300027903\|Ga0209488_10561504	Not Available	831	Open in IMG/M
3300027907\|Ga0207428_10314885	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	1156	Open in IMG/M
3300028536\|Ga0137415_10100826	Not Available	2740	Open in IMG/M
3300028792\|Ga0307504_10247090	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	652	Open in IMG/M
3300030990\|Ga0308178_1167104	Not Available	516	Open in IMG/M
3300031093\|Ga0308197_10111403	Not Available	826	Open in IMG/M
3300031098\|Ga0308191_1004596	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Kerfeldbacteria → Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10	1096	Open in IMG/M
3300033551\|Ga0247830_11158844	Not Available	617	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.13%
Host-Associated	Host-Associated	20.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.26%
Plants	Host-Associated → Plants	20.87%
Aquatic	Environmental → Aquatic	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.22%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.65%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	46.09%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031098	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_186 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_03232541	3300000033	Soil	MTQLVLYETKIVDMPQIFLPFATEAKGQTLYEKVVEGKFLLGLRTEERKI*
INPhiseqgaiiFebDRAFT_1007596964	3300000364	Soil	MLALYETKLVDMPQIFLPFVTEAKGQTLYEKMVAGKFLLGPRPEERKI*
INPhiseqgaiiFebDRAFT_1011830662	3300000364	Soil	MVQLALYETEIVEMPQVFLPFATDAKGQTLYDKMRSGELLLGGG*
F14TC_1002111122	3300000559	Soil	MAQLALYETEIVDMPQVFRSFATDSQTLYEKMVEGKFLGIRGAR*
JGI25382J43887_101659732	3300002908	Grasslands Soil	MAQLALYETEMVDMGQVFLPFATDTKGQTLYEKMAEGKFLRGPGVEEH
Ga0066397_101106891	3300004281	Tropical Forest Soil	MAQLALYATEIVDMSQVFLPFAMEGPKASALREMVEGSFCSGPGQKK*
Ga0066685_103481282	3300005180	Soil	MAQLALYETESVEMPQVFLPLATDIQGQTLYEKRVEGKVL*
Ga0065705_101870831	3300005294	Switchgrass Rhizosphere	RSRMSATAQLALYETEIVEMPQVFLPFATDAKGQTLYEKVEQSKFLLGDGQEES*
Ga0065705_102428052	3300005294	Switchgrass Rhizosphere	MAPLALYETASVAMAQVFLTFATHVKGQTLYEKMVEEKFLGIRGAR*
Ga0065705_102642263	3300005294	Switchgrass Rhizosphere	MTQLALYETKIVDMPQIFLPFATEAKGQTLYEKVVEGKFLLGLRTEERKI*
Ga0066388_1040580001	3300005332	Tropical Forest Soil	MLAPYETKIVDMPQIFLPFVTEAKGQTLYETMVEGKFLLGPGPEERKI*
Ga0068868_1009021381	3300005338	Miscanthus Rhizosphere	MSATAQLALYETEIVEMPQVFLPFATDAKGQTLYEKMVEGKFLLGDGQQE*
Ga0070700_1008799383	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSATAQLALYETEIVEMPQVFLPFATDAKGQTLYEKVEQSKFLLGDGQEES*
Ga0070708_1018110841	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLALYETEIVDMPQVCLPFAMGAKGQTLYEKMVEGKFLLGGGREE*
Ga0066701_108987491	3300005552	Soil	MRNWIMAQLALDEMQTVDMPQVFVPCATNAKGQILYEKVVEGKLLLGPGPEEA*
Ga0066905_1016680452	3300005713	Tropical Forest Soil	MAQLALYETEIVEMPQVFRPFATDATGQTLYDKMRSGELLLGDSWQE*
Ga0068861_1003785141	3300005719	Switchgrass Rhizosphere	MAQLALYETERVEMPQVFFPFATDAKGQTLSEKMVEGKCLLGDGQ*
Ga0066903_1028227052	3300005764	Tropical Forest Soil	MAQLAFYETEIVDMGQVFLPFVTDRHGQTLYEHVQANPRFLLGDGQ*
Ga0066903_1044260582	3300005764	Tropical Forest Soil	LALYETEIVGMPQMFLPFATDGKGQALYEHVESNPQFLLGDGK*
Ga0068860_1000702741	3300005843	Switchgrass Rhizosphere	MSGAEWRLYETERVEMPQVFFPFATDAKGQTLSEKMVEGKCLLGDGQ*
Ga0081455_1000019532	3300005937	Tabebuia Heterophylla Rhizosphere	MAQLALYEKEIVEMPQVFLPFATDAKGQTLYDKMLSGKLLLGPGAEED*
Ga0075417_101135981	3300006049	Populus Rhizosphere	MAQLALYETEIVDMPQVFRSFATDSQTLYEKMVKGKVSLGPGPEDHYT*
Ga0075417_102140963	3300006049	Populus Rhizosphere	MAQLALYETEIVEMPQVRLPFATDAKGQTLYDKMLSAKLLLGPGPQED*
Ga0066660_115284242	3300006800	Soil	MAQLALYETEMVDMGQVFLPFATDTKGQTLYEKMAEGKFLRGPG
Ga0075428_1022582941	3300006844	Populus Rhizosphere	YETEIVDMPQVFLPFATDAKGQTLYEHVQTNPQFLLGSE*
Ga0075431_1004776851	3300006847	Populus Rhizosphere	ALYETEIVDMPQVFLPLATDAKGQTLYEHVQANPQFLLGPGPEED*
Ga0075429_1003454812	3300006880	Populus Rhizosphere	MAQLALYETEIVEMPQVFLPFATDAKGQTLSEKMLNGKLLLGPGSQEE*
Ga0075429_1005682392	3300006880	Populus Rhizosphere	LVLYETEIVDMPQVFLPLATDAKGQTFYEHVQANPRFLLGDGQ*
Ga0075424_1001821943	3300006904	Populus Rhizosphere	MAQLALYETEMVERPQVFLPFATNAKGQTLYEKMMDGKLWLGSGEEE*
Ga0075424_1024978231	3300006904	Populus Rhizosphere	EMPQVFLPFATDAKGQTLYDKMLNGKFLLGPGPEEE*
Ga0099791_103046311	3300007255	Vadose Zone Soil	QLALYETEIVEMPQVFLPFATDAKGQTLYEKMAEGKFLLGPGDVA*
Ga0099791_103431391	3300007255	Vadose Zone Soil	ETEIVDMGQVFLPFATDAKGQTLYEKVAQSKFLLGDGREP*
Ga0099793_101180572	3300007258	Vadose Zone Soil	MAQLALYETEIVDMPQVFLPFATDAKGQTLYEKMVDGKFLLGDGKGE*
Ga0099793_101991051	3300007258	Vadose Zone Soil	MAQLALYETEIIDMPQVFLPFATDAKGQTLYEKMVEGKF
Ga0099794_102790272	3300007265	Vadose Zone Soil	MLALSETERVEMPQVCFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0099794_103642091	3300007265	Vadose Zone Soil	MFSGRIRALAETESVDTPQIFSPFTTDTKGQTLYEKLVEGKFLLGSGQEEP*
Ga0066710_1012500784	3300009012	Grasslands Soil	MLALYETEIVDMPQVCLPFATDDKGQTLYVKMVEEKVLVGEGTGE
Ga0099829_104154802	3300009038	Vadose Zone Soil	MLALYETEIVEMPQVFFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0099829_113158201	3300009038	Vadose Zone Soil	MLTLYETEMVDMPQVCLPFAMDAKEQKLYEKMGEGKFLRRLTIFA*
Ga0099828_112210342	3300009089	Vadose Zone Soil	MLALYETEIVEMPKVSIPFATDAKGQTLYEKVAQSKFLLGDGKQEM*
Ga0099827_102501573	3300009090	Vadose Zone Soil	MAQLALYETEIVDMPQVFLPFATDAKGQTLCEKMVEGKFLLGPGSEKD*
Ga0099827_102733462	3300009090	Vadose Zone Soil	MTQLALSEPETVDLTQVFLLFLTDTKGRTLYQKMGEGKFLLGDGHEQCVYN*
Ga0099827_102898031	3300009090	Vadose Zone Soil	MLALSETEIVNMPQAFLPFAADAKGQALYEKMVEGSICED*
Ga0099827_103676542	3300009090	Vadose Zone Soil	MAQLALYETETRDIPQVFLPFARDAKGQTLEEKMGEGKFLLGDGKEEM*
Ga0099827_105450052	3300009090	Vadose Zone Soil	LYETEIVEMPQVFLPFATDAKGQTLYEKMVDGKFLLGSG
Ga0099827_110310101	3300009090	Vadose Zone Soil	MLAHYEAEIVDMPPRVLTVCRECEGQTLYEKMVEGKFLLGDGREE*
Ga0075418_100539744	3300009100	Populus Rhizosphere	LYETEIVEMPQVFLPFATDAKGQTLSEKMLNGKLLLGPGSQEE*
Ga0099792_109509442	3300009143	Vadose Zone Soil	MAQLALYETEIVEMPQVFLPFATDAKGQTLYEKMAEGKFLLGSGSEES*
Ga0114129_113577341	3300009147	Populus Rhizosphere	MAQLALYETEIVEMPQVFLPFATDAKGQTLSQKMLNGKLLLGPGSQEE*
Ga0075423_130599871	3300009162	Populus Rhizosphere	QLALYETEIVEMPQIFLPFATDAKGQTLYEKVAQSKFLLGDGEKE*
Ga0126380_102922302	3300010043	Tropical Forest Soil	MAQFALYGKEIVEMPQVFLPFATDAKGHTLYDKMLSGKLLLGPGAEED*
Ga0134088_104530041	3300010304	Grasslands Soil	MAQLALYETEMVDMGQVFLPFATDTKGQTLYEKMAEGKFLRGPGVEEH*
Ga0134080_104583221	3300010333	Grasslands Soil	MAQLALYETERVEMPQVFLPCATDTQGQTLYEKRVEGKFL*
Ga0126377_108605981	3300010362	Tropical Forest Soil	QLALYETEIVEMPQVFRPFATDATGQTLYDKMRSGELLLGDSWQE*
Ga0126377_121231642	3300010362	Tropical Forest Soil	MAPLALYETVSVAMAPVFLTFATNTKGQTLYEKMVEGKFLGIRGAR*
Ga0126383_112475022	3300010398	Tropical Forest Soil	ACHYGTERADMPQVCFPFATDAKGQTLYEHVQANPKFLLGLGL*
Ga0137392_110469541	3300011269	Vadose Zone Soil	LGYSDTLFSGRMLALSETERVEMPQVCFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0137391_115081982	3300011270	Vadose Zone Soil	LALYETEIVEMPQVFFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0137393_116732752	3300011271	Vadose Zone Soil	MAQLALYETEIVDMPQVFLPFATDAKGQTLYEKMVEGKFLLGDGRE*
Ga0137389_110228572	3300012096	Vadose Zone Soil	MEQLALYETEIVDMPQVFLPFATDAKGQTLCEKMVEGKFLLGPGSEKD*
Ga0137388_115443601	3300012189	Vadose Zone Soil	EIVDMPQVFLPFATDAKGQTLYEKVAQSKLLLGDGREE*
Ga0137364_114828501	3300012198	Vadose Zone Soil	MAQLALDETQTVDMPQVFMPCATNAKGQTLYEKMVEGKFLLG
Ga0137383_110031351	3300012199	Vadose Zone Soil	MPALSETESVDMPQVCLPFTTDAKGQTLYDKMLNGE
Ga0137374_100452716	3300012204	Vadose Zone Soil	MAQLALYETESVEMPQVFLPFATDIQGQTLYEKRVEGKVLLGDGKE*
Ga0137362_101787321	3300012205	Vadose Zone Soil	IVEMPQVCFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0137362_103583303	3300012205	Vadose Zone Soil	MAQLVLYETEMVDMPQVFLPFATDTRGQTLYEKMVEGKCLLGDGTSEP*
Ga0137362_104234573	3300012205	Vadose Zone Soil	MAQLALYETEIVDMGQVFLPFATDAKGQTLYEKVTQSKFLLGDGREE*
Ga0137362_116365621	3300012205	Vadose Zone Soil	MLALYETEIMDMPQVFLPFATDAKGQTLEEKMVEGKCVLGD*
Ga0137380_109291953	3300012206	Vadose Zone Soil	MAQLALDEMQTVDMPQVFVPCATNAKGQILYEKVVEGKLLLGPGPEEA*
Ga0137381_115726651	3300012207	Vadose Zone Soil	MLALYETEIVEMPQVFFPFATDAKGQTLYEKMLEGKFLLGSGSEE
Ga0137377_104290053	3300012211	Vadose Zone Soil	MAQLALYETESVEMPQVCLPFATDTKGQTLYEKRVEGQFLLGDGKE*
Ga0137377_112059122	3300012211	Vadose Zone Soil	MTQLALYEAEIVDIPQVFLPFAPDAKVKMLAEKEDG*
Ga0137387_103406702	3300012349	Vadose Zone Soil	IIASLPLYETEIVDMPQVCFPFAMDAQGRTLYDKMREGKCLLGSGPEEIEP*
Ga0137360_103577962	3300012361	Vadose Zone Soil	MAQLALYETEIVEMPQVFLPFATDAKGQTLYEKSVEGKFLLGSGPEEP*
Ga0137361_103031912	3300012362	Vadose Zone Soil	MAQLALYETESVEMPQVFLPLATDIQGQTLYEKRVEGKVLLGDGKE*
Ga0137361_104763941	3300012362	Vadose Zone Soil	VAQYPLYEHRGAGGNDRVEMPQVFLPFATDAKGQTLYEKMAEGKFLLGDGRQT*
Ga0137361_108362721	3300012362	Vadose Zone Soil	IRDWVMAQLALYETEIVDMPHVFILFATDAQGQTLYDKMLSGKLLLGPGPEED*
Ga0137361_110998171	3300012362	Vadose Zone Soil	QLALYETEIVDMPQVFLPFATDAKGQTLYEKMVDGKFLLGDGKGE*
Ga0137390_104977441	3300012363	Vadose Zone Soil	EIVDMGQVFLPFATDAKGQTLYEKVAQSKFLLGDGREP*
Ga0137390_110313711	3300012363	Vadose Zone Soil	MAQLALYETEIVEMPQVFLPFATDAQGQTLYEKMVDGKFLLGPGPE*
Ga0137398_106874731	3300012683	Vadose Zone Soil	ETERVEMPQVCFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0137397_113628381	3300012685	Vadose Zone Soil	DTTFSGRMLALYEIEIVNIPQLFLPFVTNAKGQTLYEKMVEEKFLLGEGRET*
Ga0157282_101828351	3300012904	Soil	LALYETEIVEMPQVFLPFATDAKGQTLYEKVEQSKFLLGDGQEES*
Ga0137395_112980141	3300012917	Vadose Zone Soil	MAQLALYETEIVDMPQVFLPFATDAKGQTLYEKMVEGSLCED*
Ga0137396_105959333	3300012918	Vadose Zone Soil	IMAQLALYETEIVDMPQVFLPFATDAKGQTLYEKMVDGKFLLGDGKGE*
Ga0137394_114556801	3300012922	Vadose Zone Soil	MLALSETEIVEMPQVCFPFATDAKGQTLYEKMLEGKFLLGSGSEET*
Ga0137407_100691121	3300012930	Vadose Zone Soil	MTRKLEVHDQIVDMGQVFLLFATDAKGETLYDKMLSGKLLLGPGPQED*
Ga0137407_100785115	3300012930	Vadose Zone Soil	MAQLALYETETMVGQVFLPFATDTKGQTLYEKMVEGKFLLGDGRET*
Ga0134110_103774942	3300012975	Grasslands Soil	YETESVEMPQVFLPLATDIQGQTLYEKRVEGKVL*
Ga0163162_122400032	3300013306	Switchgrass Rhizosphere	LYETERVEMPQVFFPFATDAKGQTLSEKMVEGKCLLGDGQ*
Ga0157375_120792032	3300013308	Miscanthus Rhizosphere	MSATAQLALYETEIVEMPQVFLPFATDAKGQTLYEKVEQSKFLLG
Ga0157379_103831991	3300014968	Switchgrass Rhizosphere	MSATAQLALYETEIVEMPQVFLPFATDAKGQTLYDKVEQSKFLLGDGQEES*
Ga0157379_117002791	3300014968	Switchgrass Rhizosphere	MAQLALYETEIVEMPQVFLPFATDAKGQTLYEKMVEGKFLLGDGQQE*
Ga0137403_102013603	3300015264	Vadose Zone Soil	MAQLALYETEIMVGQVFLPFATDTKGQTLYEKMVEGKFLLGDGRET*
Ga0132258_127085822	3300015371	Arabidopsis Rhizosphere	VMAQLALYETEIVEMPQVFLPFATDARGQTLYEKMVEGKFLLGDGQQE*
Ga0184626_101109252	3300018053	Groundwater Sediment	LNETQIIDMSQVFLPFATNAKGQTLYEKVAQSKFLLEDGGEH
Ga0066667_112088631	3300018433	Grasslands Soil	MAQLALYETESVEMPQVFLPFATDTQGQTLYEKRVEGKVLFGDGKE
Ga0173481_100705032	3300019356	Soil	LYETERVEMPQVFFPFATDAMGQTLSEKMVEGKCLLGDGQ
Ga0179596_105582562	3300021086	Vadose Zone Soil	MAQLALYETEIVDMPQVFLPFATDAKGQTLYEKMVEGKFLLGDGRE
Ga0207684_103234171	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLALYETEIVDMPQVCLPFAMGAKGQTLYEKMVEGKFLLGGGREE
Ga0207662_109047312	3300025918	Switchgrass Rhizosphere	MSATAQLALYETEIVEMPQVFLPFATDAKGQTLYEKVEQSKFLLGDGQEES
Ga0207712_100186092	3300025961	Switchgrass Rhizosphere	MAPLALYETASVAMAQVFLTFATHVKGQTLYEKMVEEKFLGIRGAR
Ga0209237_12377691	3300026297	Grasslands Soil	TEMVDMGQVFLPFATDTKGQTLYEKMAEGKFLRGPGVEEH
Ga0209814_100918751	3300027873	Populus Rhizosphere	MAQLALYETEIVDMPQVFRSFATDSQTLYEKMVKGKVSLGPGPEDHYT
Ga0209814_102911381	3300027873	Populus Rhizosphere	LYETEIVEMPQVFLPFATDAKGQTLSEKMLNGKLLLGPGSQEE
Ga0209590_101808402	3300027882	Vadose Zone Soil	MLALYETEIVEMPQVFFPFATDAKGQTLYEKMLEGKFLLGSGSEET
Ga0209590_103491521	3300027882	Vadose Zone Soil	MLALSETEIVNMPQAFLPFAADAKGQALYEKMVEGSICED
Ga0209488_105615041	3300027903	Vadose Zone Soil	MAQFALYETEIVDMPQVFLPFATDAKGQTLYEKVAESKFLLGFGQEEP
Ga0207428_103148851	3300027907	Populus Rhizosphere	MAQLALYETEMVERPQVFLPFATNAKGQTLYEKMMDGKLWLGSGEEE
Ga0137415_101008266	3300028536	Vadose Zone Soil	MAQLARYETEIVDMPQVFFPFATAAKGQTLYEKMVDGKFLLGDGREA
Ga0307504_102470902	3300028792	Soil	MAQLALYETEIVDMPQVFFPFATDAKGQTLYEKMVEGKFLLGDGRE
Ga0308178_11671041	3300030990	Soil	MAQLALYETEIMDMPQVFFPFATAAKGQTLYEKMVDGKFLLGDGKGE
Ga0308197_101114032	3300031093	Soil	MAQIALYETEVVDIPQVFLPYASYAKGQTLYEKMIEGKLLLRDGKSEP
Ga0308191_10045961	3300031098	Soil	MAQLVLYETEIVDVPQGFLLLVTAAQGQTLYAKVAQSK
Ga0247830_111588441	3300033551	Soil	DWDMAQLALYETEIVDMPQVFLPFATDAKGQTFYEHVQANPRFLLGDGQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F079825

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences