Metagenome Family F079906

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F079906
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	43 residues
Representative Sequence	RRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Number of Associated Samples	100
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.74 %
% of genes near scaffold ends (potentially truncated)	97.39 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.783 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.217 % of family members)
Environment Ontology (ENVO)	Unclassified (28.696 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.913 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.86% β-sheet: 0.00% Coil/Unstructured: 77.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00221	Lyase_aromatic	18.26
PF07704	PSK_trans_fac	9.57
PF07238	PilZ	6.96
PF01850	PIN	6.09
PF00682	HMGL-like	4.35
PF01557	FAA_hydrolase	3.48
PF13614	AAA_31	2.61
PF07927	HicA_toxin	1.74
PF08241	Methyltransf_11	0.87
PF01656	CbiA	0.87
PF13180	PDZ_2	0.87
PF00497	SBP_bac_3	0.87
PF09346	SMI1_KNR4	0.87
PF04773	FecR	0.87
PF00132	Hexapep	0.87
PF13738	Pyr_redox_3	0.87
PF00246	Peptidase_M14	0.87
PF12704	MacB_PCD	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	18.26
COG4423	Uncharacterized conserved protein	Function unknown [S]	9.57
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	1.74

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.78 %
Unclassified	root	N/A	25.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.78 %
Unclassified	root	N/A	25.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.78 %
Unclassified	root	N/A	25.22 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.96 %
Unclassified	root	N/A	25.22 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.48 %
Thermotogae	phylum	All Organisms → cellular organisms → Bacteria → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.61 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.74 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.61 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.87 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.74 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.87 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.87 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.87 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.87 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.87 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Rhizobium multihospitium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium multihospitium	0.87 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.87 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.22 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.74 %
Streptomyces sp. NBRC 110028	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NBRC 110028	0.87 %
Rhizobium multihospitium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium multihospitium	0.87 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Thermotogae	class	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101095608	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300004082\|Ga0062384_101396714	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300004092\|Ga0062389_103721457	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300004152\|Ga0062386_101306771	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300004479\|Ga0062595_100214451	All Organisms → cellular organisms → Bacteria	1208	Open in IMG/M
3300005167\|Ga0066672_10349366	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300005176\|Ga0066679_11016322	Not Available	515	Open in IMG/M
3300005332\|Ga0066388_105919142	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300005457\|Ga0070662_100980125	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300005526\|Ga0073909_10478042	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300005536\|Ga0070697_101270771	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300005555\|Ga0066692_10629667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300005568\|Ga0066703_10680230	All Organisms → cellular organisms → Bacteria → Proteobacteria	593	Open in IMG/M
3300005576\|Ga0066708_10737158	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300005598\|Ga0066706_10709202	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300005610\|Ga0070763_10550812	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300005921\|Ga0070766_11059489	Not Available	559	Open in IMG/M
3300005983\|Ga0081540_1121841	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300006755\|Ga0079222_12346658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium multihospitium	533	Open in IMG/M
3300006797\|Ga0066659_10437179	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300006800\|Ga0066660_10486127	Not Available	1037	Open in IMG/M
3300006893\|Ga0073928_10566676	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300007265\|Ga0099794_10043463	Not Available	2145	Open in IMG/M
3300007788\|Ga0099795_10458286	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300009038\|Ga0099829_11300117	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae	601	Open in IMG/M
3300009143\|Ga0099792_10933075	Not Available	576	Open in IMG/M
3300010326\|Ga0134065_10384129	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	560	Open in IMG/M
3300010329\|Ga0134111_10327837	Not Available	643	Open in IMG/M
3300010337\|Ga0134062_10324033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	736	Open in IMG/M
3300010358\|Ga0126370_10458666	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1065	Open in IMG/M
3300010358\|Ga0126370_11619073	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300010361\|Ga0126378_10536751	Not Available	1285	Open in IMG/M
3300010362\|Ga0126377_13506231	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300010376\|Ga0126381_101152038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1120	Open in IMG/M
3300010398\|Ga0126383_10335986	Not Available	1525	Open in IMG/M
3300011120\|Ga0150983_14202553	Not Available	895	Open in IMG/M
3300011269\|Ga0137392_10375595	Not Available	1179	Open in IMG/M
3300011269\|Ga0137392_11586964	Not Available	513	Open in IMG/M
3300011270\|Ga0137391_10150052	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300012096\|Ga0137389_11355694	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300012096\|Ga0137389_11574407	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300012189\|Ga0137388_10692990	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300012189\|Ga0137388_10728632	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300012189\|Ga0137388_11123355	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300012202\|Ga0137363_10758475	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300012203\|Ga0137399_11426121	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300012205\|Ga0137362_10499061	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300012205\|Ga0137362_10573563	Not Available	974	Open in IMG/M
3300012205\|Ga0137362_10976949	Not Available	722	Open in IMG/M
3300012361\|Ga0137360_10845548	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300012362\|Ga0137361_11439455	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300012363\|Ga0137390_10446650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1269	Open in IMG/M
3300012685\|Ga0137397_10410852	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300012923\|Ga0137359_10696534	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012924\|Ga0137413_11583746	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300012924\|Ga0137413_11813605	Not Available	504	Open in IMG/M
3300012927\|Ga0137416_12017062	Not Available	529	Open in IMG/M
3300012975\|Ga0134110_10424631	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300015052\|Ga0137411_1197907	All Organisms → cellular organisms → Bacteria → Acidobacteria	1310	Open in IMG/M
3300015242\|Ga0137412_10034028	All Organisms → cellular organisms → Bacteria → Acidobacteria	4162	Open in IMG/M
3300017930\|Ga0187825_10126065	All Organisms → cellular organisms → Bacteria → Acidobacteria	896	Open in IMG/M
3300017936\|Ga0187821_10507620	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300019999\|Ga0193718_1091790	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300020579\|Ga0210407_10306937	All Organisms → cellular organisms → Bacteria → Proteobacteria	1239	Open in IMG/M
3300020581\|Ga0210399_11083804	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300020583\|Ga0210401_11119418	Not Available	646	Open in IMG/M
3300021046\|Ga0215015_10671548	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300021088\|Ga0210404_10465614	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300021088\|Ga0210404_10687071	Not Available	583	Open in IMG/M
3300021168\|Ga0210406_11004303	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300021170\|Ga0210400_10093672	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2372	Open in IMG/M
3300021170\|Ga0210400_11074648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300021171\|Ga0210405_11378703	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300021401\|Ga0210393_10623817	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300021404\|Ga0210389_10046750	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300021404\|Ga0210389_11406727	Not Available	532	Open in IMG/M
3300021405\|Ga0210387_10177679	Not Available	1837	Open in IMG/M
3300021406\|Ga0210386_10747077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	842	Open in IMG/M
3300021432\|Ga0210384_10228122	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300021432\|Ga0210384_11666086	Not Available	543	Open in IMG/M
3300021474\|Ga0210390_11285738	Not Available	587	Open in IMG/M
3300021560\|Ga0126371_13909361	All Organisms → cellular organisms → Bacteria → Acidobacteria	502	Open in IMG/M
3300024232\|Ga0247664_1051050	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300025929\|Ga0207664_11665365	Not Available	560	Open in IMG/M
3300026281\|Ga0209863_10152978	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300026557\|Ga0179587_10265826	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300027660\|Ga0209736_1068325	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	989	Open in IMG/M
3300027692\|Ga0209530_1034325	All Organisms → cellular organisms → Bacteria	1508	Open in IMG/M
3300027706\|Ga0209581_1126478	Not Available	850	Open in IMG/M
3300027725\|Ga0209178_1002512	All Organisms → cellular organisms → Bacteria	5756	Open in IMG/M
3300027725\|Ga0209178_1034406	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300027727\|Ga0209328_10191454	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300027737\|Ga0209038_10182995	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300027867\|Ga0209167_10757642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. NBRC 110028	529	Open in IMG/M
3300027875\|Ga0209283_10334571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	995	Open in IMG/M
3300028906\|Ga0308309_11426714	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300030737\|Ga0302310_10185944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1223	Open in IMG/M
3300031668\|Ga0318542_10011518	All Organisms → cellular organisms → Bacteria → Acidobacteria	3372	Open in IMG/M
3300031715\|Ga0307476_11189543	Not Available	558	Open in IMG/M
3300031718\|Ga0307474_10303292	Not Available	1231	Open in IMG/M
3300031754\|Ga0307475_10716354	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300031754\|Ga0307475_10828875	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300031768\|Ga0318509_10467570	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300031820\|Ga0307473_10847232	Not Available	656	Open in IMG/M
3300031823\|Ga0307478_10016087	All Organisms → cellular organisms → Bacteria → Acidobacteria	5214	Open in IMG/M
3300031831\|Ga0318564_10193418	All Organisms → cellular organisms → Bacteria → Acidobacteria	906	Open in IMG/M
3300031946\|Ga0310910_10024425	All Organisms → cellular organisms → Bacteria	4029	Open in IMG/M
3300031962\|Ga0307479_10757431	Not Available	948	Open in IMG/M
3300032060\|Ga0318505_10071087	Not Available	1534	Open in IMG/M
3300032076\|Ga0306924_12106100	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300032180\|Ga0307471_103055107	Not Available	593	Open in IMG/M
3300032261\|Ga0306920_101425689	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300032261\|Ga0306920_101507282	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300032783\|Ga0335079_10037041	All Organisms → cellular organisms → Bacteria → Acidobacteria	5602	Open in IMG/M
3300032898\|Ga0335072_10573500	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.26%
Host-Associated	Host-Associated	1.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.17%
Aquatic	Environmental → Aquatic	6.09%
Plants	Host-Associated → Plants	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.30%
Freshwater	Environmental → Aquatic → Freshwater	5.22%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.87%
Peat	Environmental → Terrestrial → Peat	0.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Loam	Environmental → Terrestrial → Soil → Loam	8.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.61%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.13%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.74%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.09%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.48%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.48%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.61%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.74%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1010956082	3300000364	Soil	ETLELACGHYSLELAPFSXIAGYRMLTYLRSALA*
Ga0062384_1013967141	3300004082	Bog Forest Soil	RHGANPRTLELPCGHYSLELPVFSYLAGYRMLSFFRTTLA*
Ga0062389_1037214571	3300004092	Bog Forest Soil	RNGAAPKTVELHCGHYSLELAPFSYIAGYRMLTFLRSSLV*
Ga0062386_1013067713	3300004152	Bog Forest Soil	LEALRRHGAPPKTVELHCGHYSLELAPFSYVAGYRMLTFLRSSLV*
Ga0062595_1002144512	3300004479	Soil	SRQMLDALRRHGAHPRSLQLHCGHYSLELAPFSYIAGYRVLAFLRAALGH*
Ga0066672_103493662	3300005167	Soil	DSLRRNGASPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALSAR*
Ga0066679_110163222	3300005176	Soil	EQMLEALRRHTPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0066388_1059191421	3300005332	Tropical Forest Soil	ENGASPKTLELACGHYSLELAPFSYIAGYRMLTYLRSALA*
Ga0070662_1009801251	3300005457	Corn Rhizosphere	RRHGAHPRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAKG*
Ga0073909_104780421	3300005526	Surface Soil	HQPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0070697_1012707712	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RHGAHPRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAKG*
Ga0066692_106296671	3300005555	Soil	HGANPKTLELSCGHYSLELAPFSYIAGIRMLRFLKGALA*
Ga0066703_106802301	3300005568	Soil	LTEQMLEALRRHTPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0066708_107371581	3300005576	Soil	GANPRTLELPCGHYSLELRPFSYIAGYRMLTYLKSALV*
Ga0066706_107092021	3300005598	Soil	RQMLDSLRRHGAAPRTLGLHCGHYSLELFPFSYIAGYRMLTFLRGALSS*
Ga0070763_105508123	3300005610	Soil	TAQMLAALRQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0070766_110594891	3300005921	Soil	PRSLELHCGHYSLELAPFSYIAGYRMLSFLRSALA*
Ga0081540_11218411	3300005983	Tabebuia Heterophylla Rhizosphere	DALHAHGANPRTLELPCGHYSLELKPFSYVAGYRMLTYLRSALA*
Ga0079222_123466581	3300006755	Agricultural Soil	HNANPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALA*
Ga0066659_104371792	3300006797	Soil	SLRRHGAAPRTLGLHCGHYSLELFPFSYIAGYRMLTFLRGALSS*
Ga0066660_104861271	3300006800	Soil	QMLDSLRRHGARPRTLALRCGHYSLELFPFSYVAGYRMLAFLRGALSSSG*
Ga0073928_105666762	3300006893	Iron-Sulfur Acid Spring	RRHGSNPRVLELACGHYSLELRPFSYIAGYRMLSFFRRALS*
Ga0099794_100434633	3300007265	Vadose Zone Soil	AALRRHNANPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALA*
Ga0099795_104582862	3300007788	Vadose Zone Soil	ALHEHGASPRTLELPCGHYSLELRPFSYIAGYRMLTYLKSALA*
Ga0099829_113001173	3300009038	Vadose Zone Soil	AAPRTLQFHCGHYSLELFPFSYVAGYLMLSFFRSALG*
Ga0099792_109330751	3300009143	Vadose Zone Soil	LTEQMLAALRRYHPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0134065_103841291	3300010326	Grasslands Soil	SPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALSAR*
Ga0134111_103278373	3300010329	Grasslands Soil	APRTLALHCGHYSLELAPFSYIAGYRMLSFFRSALT*
Ga0134062_103240331	3300010337	Grasslands Soil	NGASPHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALSAR*
Ga0126370_104586661	3300010358	Tropical Forest Soil	APRTLALHCGHYSLELPLFSHIAGYRMLTFLRDALA*
Ga0126370_116190731	3300010358	Tropical Forest Soil	GASPRTLELPCGHYSLELAPFSYIAGYRMLTFLRSALA*
Ga0126378_105367511	3300010361	Tropical Forest Soil	RQMLDSLRRHGATPRTLALHCGHYSLELFPFSYVAGYRMLSFLRYALSA*
Ga0126377_135062312	3300010362	Tropical Forest Soil	DALNEHGANPRTLQLPCGHYSLELAPFSYIAGYRMLTFLRSALA*
Ga0126381_1011520381	3300010376	Tropical Forest Soil	NGAKPRTLELHCGHYSLELAPFSYVAGYRMLRFLKSALA*
Ga0126383_103359861	3300010398	Tropical Forest Soil	QMLDSLCRHGARPRTLALHCGHYSLELFPFSYLAGYRMLAFLRGALSRPV*
Ga0150983_142025531	3300011120	Forest Soil	EQMLTALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALAQVQLALSN*
Ga0137392_103755951	3300011269	Vadose Zone Soil	PRTLALHCGHYSLELAPFSYIAGYRMLSFFRSALA*
Ga0137392_115869641	3300011269	Vadose Zone Soil	PHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137391_101500521	3300011270	Vadose Zone Soil	LRRHNANPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0137389_113556942	3300012096	Vadose Zone Soil	MLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137389_115744072	3300012096	Vadose Zone Soil	AHPRTLRLPCGHYSLELAPFSYLAGYNMLSFFRSALAS*
Ga0137388_106929901	3300012189	Vadose Zone Soil	RTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0137388_107286322	3300012189	Vadose Zone Soil	RRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137388_111233552	3300012189	Vadose Zone Soil	AALRRHNAHPRTLALHCGHYSLELPPFSHIAGFRMLTFLRQALA*
Ga0137363_107584751	3300012202	Vadose Zone Soil	NMVEALHEHGANPRTLELPCGHYSLELMPFSYIAGYRMLTYLRSALR*
Ga0137399_114261213	3300012203	Vadose Zone Soil	MLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALA*
Ga0137362_104990613	3300012205	Vadose Zone Soil	RHKPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLREALAQ*
Ga0137362_105735634	3300012205	Vadose Zone Soil	AALRKHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137362_109769491	3300012205	Vadose Zone Soil	HGGHPRTLALHCGHYSLELFPFSYIAGYCMLSFLRSALAQ*
Ga0137360_108455481	3300012361	Vadose Zone Soil	PRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA*
Ga0137361_114394552	3300012362	Vadose Zone Soil	ALHEHGANPRTLELPCDRDSLELGAFSYIAGYRMLTYLRSVLA*
Ga0137390_104466501	3300012363	Vadose Zone Soil	TALRRHNPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALA*
Ga0137397_104108523	3300012685	Vadose Zone Soil	LTALTEQMLAALRRHKPHPRTLALHCGHYSLELPPFSHIAGYRMLTFLREALAQ*
Ga0137359_106965343	3300012923	Vadose Zone Soil	LRRHNAHPRTLALHCGHYSLELPPFSHIAGFRMLTFLRSALA*
Ga0137413_115837463	3300012924	Vadose Zone Soil	TAQMVAALRKHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ*
Ga0137413_118136052	3300012924	Vadose Zone Soil	KPYPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALA*
Ga0137416_120170622	3300012927	Vadose Zone Soil	VFRKYDFTFVPALSEQTLTALPRHKPPPSTLTVHCGHYSLKLPPFSHISCYRMLPFFRQALA*
Ga0134110_104246312	3300012975	Grasslands Soil	PHTLGLHCGHYSLELAPFSYIAGYRMLAFLRGALS*
Ga0137411_11979071	3300015052	Vadose Zone Soil	ELTLEMVDALREHGANPRTLELPCGHYSLELGPFSYIAGYRMLTYLRSVLA*
Ga0137412_100340287	3300015242	Vadose Zone Soil	KPYPRTLALHCGHYSLELPPFSHIAGYRMLTFLREALAQ*
Ga0187825_101260651	3300017930	Freshwater Sediment	GAHPRTLRLPCGHYSLELAPFSYLAGYNMLSFFRSALA
Ga0187821_105076201	3300017936	Freshwater Sediment	MLDSLRRHGAHPRSLQLHCGHYSLELPPFRYIAGYRVLSFLRSALA
Ga0193718_10917902	3300019999	Soil	HGANPRTLELPCGHYSLELVPFSYIAGYRMLRYLRSALR
Ga0210407_103069373	3300020579	Soil	RRHGAKPRSMELHCGHYSLELAPFSYIAGYRMLTFLRSALAQ
Ga0210399_110838042	3300020581	Soil	ALRRHGAHPRSLELSCGHYSLELPPFSYIAGYSVLSFLRSALA
Ga0210401_111194182	3300020583	Soil	DSLRRHGAHPRVLELACGHYSLELPFFSYIAGYRMLSYLRSALA
Ga0215015_106715481	3300021046	Soil	MVEALHEHGANPRTLELPCGHYSLELMPFSYIAGYRMLTYLRSALR
Ga0210404_104656141	3300021088	Soil	EQMLAALRLHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFFRQALAQ
Ga0210404_106870713	3300021088	Soil	TEQMLTALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA
Ga0210406_110043031	3300021168	Soil	LPELTAQMLAALRQHHANLRTLELHCGHYSLELPGFSHIAGYRMLTFLRSALAQ
Ga0210400_100936723	3300021170	Soil	EQMLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALAQ
Ga0210400_110746483	3300021170	Soil	TALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLAFLRQALA
Ga0210405_113787032	3300021171	Soil	LRRHGAHPRTLRLPCGHYSLELAPFSYLAGYNMLSFFRSALA
Ga0210393_106238171	3300021401	Soil	MLAALRRHGASPRSLELYCGHYSLELAPFSYIAGYRMLSFLRSALA
Ga0210389_100467505	3300021404	Soil	SHGAHPRSLELHCGHYSLELAPFSYIAGYRVLAFLRSALG
Ga0210389_114067271	3300021404	Soil	LTAQMLAALHQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALA
Ga0210387_101776791	3300021405	Soil	RSMQLHCGHYSLELPPFSYVAGYRVLSFLRSALAH
Ga0210386_107470773	3300021406	Soil	HGARPRSLELHCGHYSLELAPFSYIAGYRVLAFLRSALG
Ga0210384_102281221	3300021432	Soil	ANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRGALAQ
Ga0210384_116660861	3300021432	Soil	AHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALAQ
Ga0210390_112857381	3300021474	Soil	NEAAPRTLELHCGHYSLELAPFSYVAGYRMLTYLRSTLLAR
Ga0126371_139093611	3300021560	Tropical Forest Soil	REHGAAPKTLQLACGHYSLELAPFSYIAGYRMLTYLRSALA
Ga0247664_10510503	3300024232	Soil	PKTLELACGHYSLELAPFSYIAGYRMLSYLRSALA
Ga0207664_116653652	3300025929	Agricultural Soil	GANPRTLELPCGHYSLELVPFNYIAGYRMLTYLRSALR
Ga0209863_101529782	3300026281	Prmafrost Soil	RTGAPPRTLELHCGHYSLELSPFSYIAGYQMLTFLRNSLTNGAIRP
Ga0179587_102658261	3300026557	Vadose Zone Soil	TALRRHTPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALA
Ga0209736_10683252	3300027660	Forest Soil	PRVLELACGHYSLELRPFSYIAGYQMLSFFRRALGNSR
Ga0209530_10343253	3300027692	Forest Soil	TPRTLELHCGHYSLELAPFSHVAGYRMLTYLRSTLLAR
Ga0209581_11264781	3300027706	Surface Soil	LPCGHYSLELAPFSYIAGYRMLSFFRSALIPKSQLA
Ga0209178_10025127	3300027725	Agricultural Soil	HGATPRTLGLHCGHYSLELAPFSYIAGYRMLAFLRSALSQ
Ga0209178_10344061	3300027725	Agricultural Soil	HGAHPRTLELPCGHYSLELAPFSYIAGYRMLSFLRSTLSRDSTS
Ga0209328_101914541	3300027727	Forest Soil	RRHDANLRTLELACGHYSLELPPFSHIAGYRMLTFLHSALAQ
Ga0209038_101829953	3300027737	Bog Forest Soil	QHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Ga0209167_107576421	3300027867	Surface Soil	PELTAQMLAALRQHHANLRTLELHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Ga0209283_103345711	3300027875	Vadose Zone Soil	MLAALRRYTPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRSVLAQ
Ga0308309_114267143	3300028906	Soil	TVELHCGHYSLELAPFSHIAGYKMLTYLRSTLLAG
Ga0302310_101859441	3300030737	Palsa	LRRTGASPRTLELHCGHYSLELSPFSYIAGYRMLTFLRSSLMSSAAHS
Ga0318542_100115181	3300031668	Soil	PKTLELACGHYSLELAPFSYIAGYRMLTYLRSALA
Ga0307476_111895431	3300031715	Hardwood Forest Soil	THPRSLQLHCGHYSLELPPFSYIAGYRVLSFLRSALAA
Ga0307474_103032921	3300031718	Hardwood Forest Soil	DSLRRHGAHPRSLQLHCGHYSLELPPFSYIAGYRVLSFLRSALAA
Ga0307475_107163542	3300031754	Hardwood Forest Soil	ALRRYKPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALT
Ga0307475_108288751	3300031754	Hardwood Forest Soil	YKPHPRTLALHCGHYSLELPPFSHIAGYRMLSFLRQALA
Ga0318509_104675701	3300031768	Soil	ADPQTLELACGHYSLELAPFSYIAGIKMLGFLRSALS
Ga0307473_108472321	3300031820	Hardwood Forest Soil	AFTEQMLAALRRHNANPRTLALHCGHYSLELPPFSHIAGYRMLTFLRSALAQ
Ga0307478_100160877	3300031823	Hardwood Forest Soil	VEALHEHGANPRTLELPCGHYSLELMPFSYIAGYRMLTYLRSALR
Ga0318564_101934183	3300031831	Soil	REHGAAPKTLELACGHYSLELAPFSYIAGYRMLTYLRSALA
Ga0310910_100244251	3300031946	Soil	RPRTLALRCGHYSLELFPFSYVAGYRMLAFLRGALSGSG
Ga0307479_107574312	3300031962	Hardwood Forest Soil	RHGANPRTLALHCGHYSLELAPFSYIAGYRMLSFFRSALA
Ga0318505_100710871	3300032060	Soil	PRTLALRCGHYSLELFPFSYVAGYRMLAFLRGALSGSG
Ga0306924_121061001	3300032076	Soil	GANPKTLELPCGHYSLELAPFSYVAGYRMLSYLRSALA
Ga0307471_1030551071	3300032180	Hardwood Forest Soil	MLAALRRHNAHPRTLALHCGHYSLELPPFSHIAGYRMLTFLRQALAQ
Ga0306920_1014256892	3300032261	Soil	RPRTLSLHCGHYSLELPFFSHIAGYRMITFLRDALA
Ga0306920_1015072821	3300032261	Soil	QHGAAPKTLELACGHYSLELAPFSYIAGYRMLNYFRAELA
Ga0335079_100370413	3300032783	Soil	MPKIRGADPRTLELPCGHYSLELAPFSYIAGYRMLSFFRSSLAQ
Ga0335072_105735001	3300032898	Soil	LRRHGAKPRSLELHCGHYSLELAPFSYIAGYRVLAFLRSALA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F079906

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences