Metagenome / Metatranscriptome Family F080012

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080012
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	109 residues
Representative Sequence	MPASHPILRDDRKHREIATRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLA
Number of Associated Samples	90
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	17.54 %
% of genes near scaffold ends (potentially truncated)	43.48 %
% of genes from short scaffolds (< 2000 bps)	85.22 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (30.435 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.130 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.69% β-sheet: 0.00% Coil/Unstructured: 37.31%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF11146	DUF2905	15.65
PF03976	PPK2	6.96
PF00903	Glyoxalase	2.61
PF13396	PLDc_N	1.74
PF12681	Glyoxalase_2	1.74
PF07883	Cupin_2	1.74
PF13561	adh_short_C2	0.87
PF00496	SBP_bac_5	0.87
PF00107	ADH_zinc_N	0.87
PF00127	Copper-bind	0.87
PF00535	Glycos_transf_2	0.87
PF04264	YceI	0.87
PF05974	DUF892	0.87
PF00150	Cellulase	0.87
PF13460	NAD_binding_10	0.87
PF00296	Bac_luciferase	0.87
PF04828	GFA	0.87
PF13738	Pyr_redox_3	0.87
PF14329	DUF4386	0.87
PF05343	Peptidase_M42	0.87
PF09851	SHOCT	0.87
PF05425	CopD	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	6.96
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	0.87
COG1362	Aspartyl aminopeptidase	Amino acid transport and metabolism [E]	0.87
COG1363	Putative aminopeptidase FrvX	Carbohydrate transport and metabolism [G]	0.87
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.87
COG2195	Di- or tripeptidase	Amino acid transport and metabolism [E]	0.87
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.87
COG2730	Aryl-phospho-beta-D-glucosidase BglC, GH1 family	Carbohydrate transport and metabolism [G]	0.87
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.87
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.87
COG3934	Endo-1,4-beta-mannosidase	Carbohydrate transport and metabolism [G]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
All Organisms	root	All Organisms	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
cellular organisms	root	All Organisms → cellular organisms	40.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.13 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.83 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.87 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.74 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.87 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.87 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.57 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.74 %
Apicomplexa	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa	0.87 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.87 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.87 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.22 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.87 %
Aconoidasida	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida	0.87 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.87 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples	0.87 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.87 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.87 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.87 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.87 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.87 %
Piroplasmida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Piroplasmida	0.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.87 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.87 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.87 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.87 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.87 %
Theileriidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Piroplasmida → Theileriidae	0.87 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.87 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.87 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.87 %
unclassified Nocardioides	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides	0.87 %
Theileria	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Piroplasmida → Theileriidae → Theileria	0.87 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	0.87 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.87 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.22 %
Nocardioides sp. URHA0020	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. URHA0020	0.87 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.87 %
Theileria annulata	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Piroplasmida → Theileriidae → Theileria → Theileria annulata	0.87 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.87 %
Bradyrhizobium sp. Ai1a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	0.87 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.87 %
uncultured Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101962492	Not Available	925	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101964100	Not Available	4155	Open in IMG/M
3300000953\|JGI11615J12901_10966521	Not Available	550	Open in IMG/M
3300000956\|JGI10216J12902_104886345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2604	Open in IMG/M
3300000956\|JGI10216J12902_109157289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1395	Open in IMG/M
3300004156\|Ga0062589_101026538	Not Available	773	Open in IMG/M
3300004156\|Ga0062589_101163558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	735	Open in IMG/M
3300004157\|Ga0062590_100613605	Not Available	959	Open in IMG/M
3300004157\|Ga0062590_101465535	Not Available	683	Open in IMG/M
3300004463\|Ga0063356_100459320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1666	Open in IMG/M
3300004479\|Ga0062595_102620750	Not Available	506	Open in IMG/M
3300004480\|Ga0062592_101641599	Not Available	623	Open in IMG/M
3300004643\|Ga0062591_100011375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3855	Open in IMG/M
3300004643\|Ga0062591_102169990	Not Available	577	Open in IMG/M
3300004643\|Ga0062591_102190196	Not Available	575	Open in IMG/M
3300005093\|Ga0062594_100747885	Not Available	893	Open in IMG/M
3300005093\|Ga0062594_101835476	Not Available	640	Open in IMG/M
3300005329\|Ga0070683_101546593	Not Available	638	Open in IMG/M
3300005332\|Ga0066388_101800804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1088	Open in IMG/M
3300005332\|Ga0066388_102345454	Not Available	967	Open in IMG/M
3300005340\|Ga0070689_100564770	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300005347\|Ga0070668_100833805	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300005354\|Ga0070675_100307883	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300005364\|Ga0070673_100912372	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300005438\|Ga0070701_10561597	Not Available	750	Open in IMG/M
3300005438\|Ga0070701_10583075	Not Available	738	Open in IMG/M
3300005455\|Ga0070663_100684540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300005459\|Ga0068867_101340709	Not Available	662	Open in IMG/M
3300005543\|Ga0070672_100633077	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300005543\|Ga0070672_101815520	Not Available	548	Open in IMG/M
3300005544\|Ga0070686_101247455	Not Available	619	Open in IMG/M
3300005546\|Ga0070696_101134791	Not Available	658	Open in IMG/M
3300005548\|Ga0070665_100491104	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300005615\|Ga0070702_100417273	Not Available	965	Open in IMG/M
3300005719\|Ga0068861_102054771	Not Available	571	Open in IMG/M
3300006049\|Ga0075417_10621558	Not Available	551	Open in IMG/M
3300006580\|Ga0074049_10036533	Not Available	527	Open in IMG/M
3300006844\|Ga0075428_101143303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300006845\|Ga0075421_101715534	Not Available	679	Open in IMG/M
3300006846\|Ga0075430_101460548	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Apicomplexa → Aconoidasida → Piroplasmida → Theileriidae → Theileria → Theileria annulata	562	Open in IMG/M
3300006846\|Ga0075430_101674972	Not Available	522	Open in IMG/M
3300006847\|Ga0075431_100705985	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300006847\|Ga0075431_100896935	Not Available	856	Open in IMG/M
3300006852\|Ga0075433_10053550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3519	Open in IMG/M
3300006853\|Ga0075420_100119685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. URHA0020	2319	Open in IMG/M
3300006854\|Ga0075425_102370454	Not Available	589	Open in IMG/M
3300006871\|Ga0075434_100514732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1217	Open in IMG/M
3300006881\|Ga0068865_101931664	Not Available	535	Open in IMG/M
3300006904\|Ga0075424_102304791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ai1a-2	566	Open in IMG/M
3300006969\|Ga0075419_10114899	Not Available	1739	Open in IMG/M
3300009094\|Ga0111539_10548832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1346	Open in IMG/M
3300009100\|Ga0075418_10401612	Not Available	1466	Open in IMG/M
3300009147\|Ga0114129_10261827	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2317	Open in IMG/M
3300009147\|Ga0114129_10687103	Not Available	1317	Open in IMG/M
3300009148\|Ga0105243_10018875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5229	Open in IMG/M
3300009156\|Ga0111538_10084077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4049	Open in IMG/M
3300009176\|Ga0105242_10668859	Not Available	1012	Open in IMG/M
3300009176\|Ga0105242_11231044	Not Available	769	Open in IMG/M
3300010403\|Ga0134123_12863193	Not Available	551	Open in IMG/M
3300011412\|Ga0137424_1104250	Not Available	583	Open in IMG/M
3300011439\|Ga0137432_1163192	Not Available	717	Open in IMG/M
3300011440\|Ga0137433_1026085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1703	Open in IMG/M
3300012672\|Ga0137317_1023082	Not Available	599	Open in IMG/M
3300012893\|Ga0157284_10344016	Not Available	503	Open in IMG/M
3300012897\|Ga0157285_10314384	Not Available	537	Open in IMG/M
3300012904\|Ga0157282_10163896	Not Available	689	Open in IMG/M
3300012907\|Ga0157283_10222662	Not Available	609	Open in IMG/M
3300012910\|Ga0157308_10331890	Not Available	568	Open in IMG/M
3300012913\|Ga0157298_10235104	Not Available	611	Open in IMG/M
3300012915\|Ga0157302_10063518	Not Available	1077	Open in IMG/M
3300012951\|Ga0164300_10306600	All Organisms → cellular organisms → Bacteria → Terrabacteria group	833	Open in IMG/M
3300012960\|Ga0164301_10584967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	821	Open in IMG/M
3300012961\|Ga0164302_11560746	All Organisms → cellular organisms → Bacteria → Terrabacteria group	547	Open in IMG/M
3300014969\|Ga0157376_11328125	Not Available	749	Open in IMG/M
3300015371\|Ga0132258_10160093	All Organisms → cellular organisms → Bacteria	5411	Open in IMG/M
3300015371\|Ga0132258_10558174	All Organisms → cellular organisms → Bacteria	2870	Open in IMG/M
3300015372\|Ga0132256_100101860	All Organisms → cellular organisms → Bacteria	2798	Open in IMG/M
3300015372\|Ga0132256_100128263	Not Available	2514	Open in IMG/M
3300015372\|Ga0132256_100328421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1620	Open in IMG/M
3300015372\|Ga0132256_102716012	Not Available	594	Open in IMG/M
3300015373\|Ga0132257_101664128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	817	Open in IMG/M
3300015373\|Ga0132257_104165265	Not Available	526	Open in IMG/M
3300015374\|Ga0132255_100792379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1412	Open in IMG/M
3300015374\|Ga0132255_101772370	Not Available	938	Open in IMG/M
3300015374\|Ga0132255_104487035	All Organisms → cellular organisms → Bacteria → Terrabacteria group	592	Open in IMG/M
3300017792\|Ga0163161_10903669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	748	Open in IMG/M
3300017965\|Ga0190266_10187137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium	975	Open in IMG/M
3300017965\|Ga0190266_10370643	Not Available	781	Open in IMG/M
3300017965\|Ga0190266_10427825	Not Available	745	Open in IMG/M
3300018077\|Ga0184633_10141236	Not Available	1248	Open in IMG/M
3300018432\|Ga0190275_10079963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	2833	Open in IMG/M
3300018432\|Ga0190275_11401644	Not Available	776	Open in IMG/M
3300018476\|Ga0190274_13330439	Not Available	541	Open in IMG/M
3300018481\|Ga0190271_10089544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2793	Open in IMG/M
3300018481\|Ga0190271_10459785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1378	Open in IMG/M
3300019263\|Ga0184647_1277524	Not Available	558	Open in IMG/M
3300019356\|Ga0173481_10664296	Not Available	558	Open in IMG/M
3300019361\|Ga0173482_10145165	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300020005\|Ga0193697_1011006	All Organisms → cellular organisms → Bacteria	2203	Open in IMG/M
3300020016\|Ga0193696_1091126	Not Available	787	Open in IMG/M
3300021082\|Ga0210380_10460747	Not Available	582	Open in IMG/M
3300022756\|Ga0222622_10067091	Not Available	2097	Open in IMG/M
3300025899\|Ga0207642_10445911	All Organisms → cellular organisms → Bacteria → Terrabacteria group	783	Open in IMG/M
3300025908\|Ga0207643_10403615	Not Available	864	Open in IMG/M
3300025926\|Ga0207659_11714695	Not Available	535	Open in IMG/M
3300025933\|Ga0207706_10920455	All Organisms → cellular organisms → Bacteria → Terrabacteria group	738	Open in IMG/M
3300026067\|Ga0207678_10509896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1049	Open in IMG/M
3300026089\|Ga0207648_11157986	Not Available	726	Open in IMG/M
3300027909\|Ga0209382_10449510	Not Available	1427	Open in IMG/M
3300028771\|Ga0307320_10378295	Not Available	567	Open in IMG/M
3300028889\|Ga0247827_10944829	Not Available	582	Open in IMG/M
3300031820\|Ga0307473_10893378	Not Available	641	Open in IMG/M
3300032013\|Ga0310906_11276739	Not Available	536	Open in IMG/M
3300034690\|Ga0364923_0054360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	953	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.91%
Host-Associated	Host-Associated	46.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	46.96%
Plants	Host-Associated → Plants	46.09%
Aquatic	Environmental → Aquatic	6.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	33.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.04%
Sediment	Environmental → Aquatic → Sediment	5.22%
Freshwater	Environmental → Aquatic → Freshwater	1.74%
Floodplain	Environmental → Terrestrial → Floodplain	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.17%
Loam	Environmental → Terrestrial → Soil → Loam	7.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.22%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.22%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.35%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.87%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	9.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.35%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.61%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012672	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT266_2	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019263	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1019624923	3300000364	Soil	MGILGEPVLLTTTALAIVVXMPASHPIPPDDRKHREIAPRHASRQRCVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGVLALAWQFAPRRLRLMAGGVAALAFVVLAGSVAALALALTQLA*
INPhiseqgaiiFebDRAFT_1019641005	3300000364	Soil	MSHPIQPNDREHRGVATREASRRRRVADEWTLVEFRPARWLLTALTVLALWLVGPKLGKRGLLALAWQFAPRQLRLVAGGVAALALVVLAGSVAALALVLNQLG*
JGI11615J12901_109665212	3300000953	Soil	MPASHPILPDDRRHADIAPRRVGGQRRVSDDWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWRFAPRRLRLIAGGIAALALVVLAGSVAALALALTQLA*
JGI10216J12902_1048863454	3300000956	Soil	MLHDDREHREIRTGQAIRQRRASDEWTLVEFRPARWLLAALTVLALWLLSPTLGKRGLAGLAWEFAPRRLRLIAGGVATLVLVVLAGSVAAIALALTQLV*
JGI10216J12902_1091572892	3300000956	Soil	MVVQMPASHPALPNNRKHGEVERRETSGRQGVGSDEWTFVEFRPARWLVTTLTVLALWLVSPQLGKRGLLVLGWRLAPRRLRLIAGGAAALSLVLVAGSVAAVALAFTQLV*
Ga0062589_1010265381	3300004156	Soil	MQMPASHPTLRNDRKHREIATGHSTRQGRVSDEWTLVEFRPARWLLTALTVLALWLAGPTLGKRGLLALAWHVAPRRLRLVAGGVAALALVVLVGSFAALALALTQLA*
Ga0062589_1011635582	3300004156	Soil	TALAIVVQMPASHPTPPTDRKHREIATRQASRQRGGSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWQFTPRRLRLIAGGVAALALVVLAGSVAALALALT*
Ga0062590_1006136052	3300004157	Soil	MPASHPTPPTDRKHREIATRQASRQRGGSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWQFTPRRLRLIAGGVAALALVVLAGSVAALALALT*
Ga0062590_1014655352	3300004157	Soil	MPASHPTLRNDRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0063356_1004593201	3300004463	Arabidopsis Thaliana Rhizosphere	MSAAPRLTQPPDYERRDIVARDARERPAADEWRLIEFRPARWLVVSLTLLAFWLVRPALGKRALLALAWRFTPRRVRLMAGGVAALALVVLAGSMAALVLVLDQLT*
Ga0062595_1026207501	3300004479	Soil	GILGQAVSSTALAIVVQMPASHPTLRNDRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0062592_1016415991	3300004480	Soil	MPASHPTLPNDREHREIATKQARRQRRDSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGVLALAWRFAPRRLRLIAGGLATLALVVLAGSVVALALALTQLV*
Ga0062591_1000113754	3300004643	Soil	VVQMPASHPILPDDREHRAIAPRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLSKRGVLALAWQFAPRRLRLIAGGVAALALVVLVGSVAALALALTQLA*
Ga0062591_1021699902	3300004643	Soil	MTLAIVVQMPASHPTLPDDPKHREIATRQASRRRGVSDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLA*
Ga0062591_1021901961	3300004643	Soil	QMPASHPTLRNDRKHREIATGHSTRQGRVSDEWTLVEFRPARWLLTALTVLALWLAGPTLGKRGLLALAWHVAPRRLRLVAGGVAALALVVLVGSFAALALALTQLA*
Ga0062594_1007478852	3300005093	Soil	MPASHPILPDDRKHREIATRQASRQRHVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWRFAPRRLRLVAGGVAALAVVVLAGSVAALALALNQLV*
Ga0062594_1018354761	3300005093	Soil	MPASHPTPPTDRKHREIATRQASRQRGGSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWQFTPRRLRLIAGGVAALALVV
Ga0070683_1015465931	3300005329	Corn Rhizosphere	ILPRDRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0066388_1018008043	3300005332	Tropical Forest Soil	MAAGEPIPPNRRKQRDIATGQAGRRVADEWTLVEFRPARWLVAALTVLWLWLTRPPVGKRALLAVAWRFTPRRLKLIAGGAATLALIVFLGSVAALLLVLNQLA*
Ga0066388_1023454542	3300005332	Tropical Forest Soil	MSASHPIRADDPEGRDRAVPGAVRRGRVGDDWKLVEFRPARWLWVALTLAAFLLVRPPLGKRALLTVAWRFTPRRLRLIAGGAAALALVVLAGSVAAL
Ga0070689_1005647702	3300005340	Switchgrass Rhizosphere	DRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0070668_1008338051	3300005347	Switchgrass Rhizosphere	MTLAIVVQMPASHPTLPDDPKHRAIATRQASRRRGVSDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLT*
Ga0070675_1003078834	3300005354	Miscanthus Rhizosphere	VAPAPSPRQAADPQPSGPSQFYALAIVVQMPAFHPTLPNDPEHRAIARRQARRQRDGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0070673_1009123722	3300005364	Switchgrass Rhizosphere	MPASHPTPPTDRKHREIATRQASRQRGGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0070701_105615972	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MAVDQRILPQDRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0070701_105830752	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VVQMPASHPTLRNDRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0070663_1006845402	3300005455	Corn Rhizosphere	DRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0068867_1013407091	3300005459	Miscanthus Rhizosphere	VAPAPSPRQAADPQPSGPSQFYALAIVVQMPAFHPTLPNDPEHRAIARRQARRQRDGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVV
Ga0070672_1006330771	3300005543	Miscanthus Rhizosphere	DPEHRAIARRQARRQRDGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0070672_1018155201	3300005543	Miscanthus Rhizosphere	SPVGAGILGQAVSSTALAIVVQMPASHPTLRNDRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0070686_1012474551	3300005544	Switchgrass Rhizosphere	SSTALAIVVQMPASHPTLRNDRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0070696_1011347912	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MTLAIVVQMPASHPTLPDDPKHRAIATRQASRRRGVSDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALNQLV*
Ga0070665_1004911042	3300005548	Switchgrass Rhizosphere	PQDRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0070702_1004172731	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MAVDQRILPRDRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0068861_1020547711	3300005719	Switchgrass Rhizosphere	VQMPASHPTLPDDPKHRAIATRQASRRRGVSDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLT*
Ga0075417_106215581	3300006049	Populus Rhizosphere	GQVPASHPTLPDDREHRDIATRQASRPRGGSDEWTLVEFRPARWLVTVLTVLGLWLIGPRVGKRGLLALVWQFAPRRVRLIVGGVAALALIVFVGSVAVLALALIG*
Ga0074049_100365331	3300006580	Soil	ARILGLAVLLRSTALAIVGQMPASQRTLPKDRKHRDSAPRQASRRGSADEWTLVEFRPARWLVSALTLLALWLGGAKLGKRGLLALAWRFAPRRVRLVAGGVAAVALVVLVGSVAALALALTQLV*
Ga0075428_1011433032	3300006844	Populus Rhizosphere	MNTVRSRRDPGPPIVGQVPASHPTLPDDREHRDIATRQASRPRGGSDEWTLVEFRPARWLVTVLTVLGLWLIGPRVGKRGLLALVWQFAPRRVRLIVGGVAALALIVFVGSVAVLALALIG*
Ga0075421_1017155341	3300006845	Populus Rhizosphere	MPASHPILPDDRKHREIATRHPSRQRRISDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWRFAPRRLKLIAGGVAALAFVVLAGSVAALALTQLA*
Ga0075430_1014605481	3300006846	Populus Rhizosphere	MTLAIVVQMPASHPTLPDDPKHREIATRQASRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWRFAPRRLRLVAGGVAALAVVVLVGSVAALALALNQLV*
Ga0075430_1016749722	3300006846	Populus Rhizosphere	AAAPSPYRRRDPGCAVLGCTALAIVAPMPASHPILPDDRKHREIATRHPSRQRRISDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWRFAPRRLKLIAGGVAALAFVVLAGSVAALALTQLA*
Ga0075431_1007059851	3300006847	Populus Rhizosphere	MPASHPILPDDRKHREIATRHPSRQRRISDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWRFAPRRLKLIAGGVAALAFVVLAGSVAALALTQLA*
Ga0075431_1008969351	3300006847	Populus Rhizosphere	MNTVRSRRDPGPPIVGQVPASHPTLPDDREHRDIATRQASRPRGGSDEWTLVEFRPARWLVTVLTVLGLWLIGPRVGKRGLLALVWQFAPRRVRLIVGGVAALALIVF
Ga0075433_100535501	3300006852	Populus Rhizosphere	PDDRKHREIATRKASRRRPVNDQWTVVEFRPARWLLTALTVLALWLVSPTLGKRGLVTLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLG*
Ga0075420_1001196853	3300006853	Populus Rhizosphere	MNTVRSRRDPGPPIVGQVPASHPTLPDDREHRDIATRQASRPRGGSDEWTLVEFRPARWLVTVLTVLGLWLIGPRVGKRGLLALVWQFAPRRVRLIVGGVAALALVVFAGSVAVLALALIG*
Ga0075425_1023704541	3300006854	Populus Rhizosphere	HREITTRQASRQGRVSDEWTLVEFRPARWLLTALTVLTLWLVGPKLGKRGLLAVAWKFAPRRLRLIAGGLAALALVVLAGSIAALALALDHLA*
Ga0075434_1005147323	3300006871	Populus Rhizosphere	TALAIVAQMPASSPIQPNDRKHRAIATREASRQRRVAEEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLVTLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLG*
Ga0068865_1019316641	3300006881	Miscanthus Rhizosphere	ILPQDRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0075424_1023047911	3300006904	Populus Rhizosphere	MLPDDRKHREIATRKASRRRPVNDQWTVVEFRPARWLLTALTVLALWLVSPTLGKRGLVTLAWQFAPRRLRLVAGGVAALALVVLAGSVAALALALT
Ga0075419_101148993	3300006969	Populus Rhizosphere	MPASHPILPDDRKHREIATRHPSTQRRISDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWRFAPRRLKLIAGGVAALAFVVLAGSVAALALTQLA*
Ga0111539_105488322	3300009094	Populus Rhizosphere	MPASHPILPDDRKHREIAPRRASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWRFAPRRLRLVAGGVAALAVVVLAGSVAALALALNQLV*
Ga0075418_104016123	3300009100	Populus Rhizosphere	MPASHPTLPNDRTHREIATKQARRQRRDGDEWTLVEFRPARWLVTALTVLALWLVSPTLGKRGLLALAWQFAPRRLRLIAGGLATLALVVLAGSVVALALALTQLV*
Ga0114129_102618271	3300009147	Populus Rhizosphere	MPAYHPTLPNDRKHREIATKQARRQRRDRDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGVLALAWQFAPRRLRLIAGGLATLALVVLAGSVVALALALTQLV*
Ga0114129_106871031	3300009147	Populus Rhizosphere	MNTVRSRRDPGPPIVGQVPASHPTLPDDREHRDIATRQASRPRGGSDEWTLVEFRPARWLVTVLTVLGLWLIGPRVGKRGLLALVWQFAPPRVRLIVGGVAALALVVFAGSVAVLALALIG*
Ga0105243_100188753	3300009148	Miscanthus Rhizosphere	MAVDQRILPRDRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0111538_100840774	3300009156	Populus Rhizosphere	MPASHPTLPNDRTHREIATKQARRQRRDRDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGVLALAWQFAPRRLRLIAGGLATLALVVLAGSVVALALALTQLV*
Ga0105242_106688592	3300009176	Miscanthus Rhizosphere	MAVAQRILPQDRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA*
Ga0105242_112310442	3300009176	Miscanthus Rhizosphere	SHGEMATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0134123_128631932	3300010403	Terrestrial Soil	VAPAPSPRQAADPQPSGPSQFYALAIVVQMPAFHPTLPNDPEHREIATRQAPRQRGGSDEWTLVEFRPARWLVTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0137424_11042501	3300011412	Soil	VAQTPVPQPIEPHDREHRDVATGEASRKRRVADEWTLVEFRPARWLLASLTLLAFWLVRPTLGKGALLALAWRFTPRRLRLVAGGVAALALVVLAGSIAALVLLA*
Ga0137432_11631922	3300011439	Soil	MPASHPVLPDDRKHREIATRHARQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLV*
Ga0137433_10260852	3300011440	Soil	MPASHPVLPDDRKHREIATRHARRQRPVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALSQLG*
Ga0137317_10230821	3300012672	Soil	MPASHPILPDDRKHREIATRHARRQRPVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLA*
Ga0157284_103440161	3300012893	Soil	TLAIVVQMPASHPILPDDREHREIAPRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWQFTPRRLRLIAGGVAALALVVLAGSVAALALALT*
Ga0157285_103143842	3300012897	Soil	DRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA*
Ga0157282_101638961	3300012904	Soil	NDRKHREIATGHSTRQGRVSDEWTLVEFRPARWLLTALTVLALWLAGPTLGKRGLLALAWHVAPRRLRLVAGGVAALALVVLVGSFAALALALTQLA*
Ga0157283_102226621	3300012907	Soil	VRSTALAIVVQMPASHPILPDDREHREIAPRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGVLALAWRFAPRRLRLIAGGVAALALVVLAGSVVALALALTQLV*
Ga0157308_103318902	3300012910	Soil	ALAIVVQMPASHPTPPTDRKHREIATRQASRQRGGSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWQFTPRRLRLIAGGVAALALVVLAGSVAALALALT*
Ga0157298_102351042	3300012913	Soil	MPASHPILPDDREHRAIAPRHASRQRRVSDEWTLVEFRPARWLLTALTVVALWVVSPKLGKRGLLGLAWQFAPRRLRLIAGGFAALALVVLAGSVAALALALTQLV*
Ga0157302_100635182	3300012915	Soil	VAPAPSPRQAADPQPSGPSQFYALAIVVQMPAFHPTLPNDPEHRSIARRQARRQRDGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0164300_103066001	3300012951	Soil	EIATRQASGQRGGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0164301_105849671	3300012960	Soil	PTLPKDRNHRDSAPRQASGQGSADEWTLVEFRPARWLVSALTLLALWLGGAKLGKRGLLALAWRFATRRVRLVAGGVAAVALVVLVGSVAALALALTQLV*
Ga0164302_115607461	3300012961	Soil	QMRAFHPTLPNDPEHRAIARRQARRQRDGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0157380_102626082	3300014326	Switchgrass Rhizosphere	MAVAQRILPQDRDHRDLDTRDASMRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALLVLVGSVAAFVLVLDQLA*
Ga0157376_113281251	3300014969	Miscanthus Rhizosphere	MPAFHPTLPNDPEHREIATRQAPRQRGGSDEWTLVEFRPARWLVTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0132258_101600937	3300015371	Arabidopsis Rhizosphere	MPASDQMQRRDRKHRDVATREASSQGRVADEWTLVEFRPARWLLTALTVLAFWLAGPKVGNRRLLALAWQFAPRRLRLIAASVAALVLVVVAGSIAALALMLNQLA*
Ga0132258_105581742	3300015371	Arabidopsis Rhizosphere	MPASHPILPDDRKHREISTTQAGRQRRVSDEWALVEFRPARWLLTALTVLALWLVSPALGKRGLVVLAWRFAPRRLRLIAGGVVALALVVLAGSVAALALVLAQLG*
Ga0132256_1001018606	3300015372	Arabidopsis Rhizosphere	MPASDQMQRRDRKHRDVATREASSQGRVADEWTLVEFRPARWLLTALTVLAFWLAGPKVGNRRLLALAWQFAPRRLRLIAASVGALVLVVVAGSIAALALMLNQLA*
Ga0132256_1001282632	3300015372	Arabidopsis Rhizosphere	LVAAEISRTRAGQAVGSTALAIVVQMPASHPILPDDRKHQKIATRQAGRQRRVSDEWALVEFRPARWLLTALTVLALWLVSPALGKRGLVVLAWRFAPRRLRLIAGGVVALALVVLAGSVAALALVLAQLG*
Ga0132256_1003284213	3300015372	Arabidopsis Rhizosphere	VVQMPAFHPTLPNDPEHREIATRQAPRQRGGSDEWTLVEFRPARWLATALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0132256_1027160121	3300015372	Arabidopsis Rhizosphere	MPVPKRMQRHDLERRDVETREASRDRHTAESWTFVEFRPARWLLVSLALFAFWLVRPALGNRAILVLAWRFTPHRLRLIAGGVAALALVTLAGSVATLVLVLDQVA*
Ga0132257_1016641281	3300015373	Arabidopsis Rhizosphere	MAVDQRILPQDRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAACVLVLDQLA*
Ga0132257_1041652651	3300015373	Arabidopsis Rhizosphere	LRPTDRSHSRAGPRRLERLAREGYRTAGARILRVAVLLRSTALAIVGQMPASHPTLPKDRKHRDSAPRQASRRGSADEWTLVEFRPARWLVSALTLLALWLGGAKLGKRGLLALAWRFAPRRVRLVAGGVAAVALVVLAGSVAALALALTQLV*
Ga0132255_1007923791	3300015374	Arabidopsis Rhizosphere	MAVDQRILPQDRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVFVGSVAAFVLVLDQLA*
Ga0132255_1017723702	3300015374	Arabidopsis Rhizosphere	MQRHDLERRDVETREASRNRHTAESWTLVEFRPARWLLASLALLAFWLVRPALGTRAILVLAWRFAPHRLRLIAGGVAALALVTLAGSVATLVLVLDQVA*
Ga0132255_1044870352	3300015374	Arabidopsis Rhizosphere	GPSQFYALAIVVQMPAFHPTLPNDPEHRDIATRQASGHRGGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA*
Ga0163161_109036692	3300017792	Switchgrass Rhizosphere	RILPQDRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA
Ga0190266_101871371	3300017965	Soil	KHREIATRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVRPNLGKRGLLALAWQFAPRRLRLIAGGVAALAFVVLAGSVAALALTQLA
Ga0190266_103706431	3300017965	Soil	MPASHPILRDDRKHREIATRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLA
Ga0190266_104278251	3300017965	Soil	MPASHPVLPDDRKHREIATRHASRQRSVSDEWTLVEFRPARWLLTALTILALWLVSPTLGKRGLVGLAWQFAPRRLRLIAGGVAALALVVL
Ga0184633_101412364	3300018077	Groundwater Sediment	MPASHPILPDDRKHREIATRQASRQRRISDEWTLEFRPARWLLTALTVLALWLVSPNLGKRGLLDLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLV
Ga0190275_100799633	3300018432	Soil	MTYEERTPALAIVMQMPAPHPMLSDDRKHREITTRLASDQRSVSDEWTLVEFRPARWLLTVLTVLALWLVSPTLGKRGLLGLAWQFAPRRLRVIAGGVAALVLVVLAGSVAALALALTQL
Ga0190275_114016442	3300018432	Soil	DRVERLSAAMTHEERTPALAIVKQMPASHPMLPDDREHREITTRLASGQRSVSDEWTLVEFRPARWLLAALTVLALWLVNPKLGKRGLLGLAWQFAPRRLRLIAGSVAALVLVVLAGSLAALALALTQLA
Ga0190274_133304391	3300018476	Soil	VVQMPASHPVLPDDRKHREIATRHARRQRPVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRFRLIAGGVAAIALVVLAGSVAALALALTQLV
Ga0190271_100895441	3300018481	Soil	MPASHPVLPDDRKHREIATRHASRQRPVSDEWTLVEFRPARWLLTVLTILALWLVSPTLGKRGLLGLAWQFAPRRLRLIAGGVTALALVVLAGSVAALALALTQLV
Ga0190271_104597851	3300018481	Soil	MTYEERTPALAIVMQMPASHPMLPDDRNHREITTRLASQQRSVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLGLAWQFAPRRLRLIAGGVAALVLVVLAGSVAALAIALT
Ga0184647_12775241	3300019263	Groundwater Sediment	MPPSHPILPDDRKHREIATRQASRQRRVSDAWTLVEFRPARWLLTALTVLALWLVSPNLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALSQLG
Ga0173481_106642962	3300019356	Soil	MPASHPILPDDREHRAIAPRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGVLALVWQFAPRRLRLIAGGVAALALVVLAGSVA
Ga0173482_101451652	3300019361	Soil	MPASHPTLRNDRKHRKIATDHSTRQRRVSDEWTLVEFRPARWLLTALTVLALWLASPTLGKRGLLALTWHFAPRRLRLVAGGAAALALLVLVGGFAALALALAQLA
Ga0193697_10110065	3300020005	Soil	MPATHPILPDDRKHREIATRHASRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLIGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLV
Ga0193696_10911261	3300020016	Soil	IPPRQASRQRRISDEWTLVEFRPARWLLTALTVLALWLVSPNLGKRGLLDLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLV
Ga0210380_104607471	3300021082	Groundwater Sediment	MPASHPILPDDRKHREIATRQASRQRRVSDAWTLVEFRPARWLLTALTVLALWLVSPNLGKRGLIGLAWQFTPRRLRLIAGGVAALALVVLAGSVAALALALTQLA
Ga0222622_100670913	3300022756	Groundwater Sediment	MPASYPTLPDDRKHREIATRQVSRQRRVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLALAWRFAPRRLRLIAGGVAALALVVLAGGVAALALALTQLA
Ga0207642_104459112	3300025899	Miscanthus Rhizosphere	YALAIVVQMPAFHPTLPNDPEHREIATRQAPRQRGGSDEWTLVEFRPARWLVTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA
Ga0207643_104036151	3300025908	Miscanthus Rhizosphere	MPASHPTLPDDPKHREIATRQASRRRGVSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA
Ga0207659_117146951	3300025926	Miscanthus Rhizosphere	VAPAPSPRQAADPQPSGPSQFYALAIVVQMPAFHPTLPNDPEHRAIARRQARRQRDGSDEWTLVEFRPARWLLTALTVLGLWLVSPKLGKRGLLALAWQFAPRRLRLIAGGVAALALVVVAGSVAALAIALSQLA
Ga0207706_109204552	3300025933	Corn Rhizosphere	RILPQDRDHRDLDTRDASRRDVAGDWTLVEFRPARWLLASLTILTLWLVSPILGKRAVLALAWGFTPRRLRLVAGGVAALALVVVAGSVAALAIALSQLA
Ga0207678_105098963	3300026067	Corn Rhizosphere	RILPRDRDHRDLDTRDASRKDVAGDWTLVEFRPARWLLASLTILTLWLVGPILGKRAVLALAWRFTPRRLRLVAGGVAALALVVLVGSVAAFVLVLDQLA
Ga0207648_111579863	3300026089	Miscanthus Rhizosphere	MTLAIVVQMPASHPTLPDDPKHRAIATRQASRRRGVSDEWTLVEFRPARWLLTALTVLALWLVSPALGKRGLLALAWRFAPRRLRLVAGGVAALAVVVLAGSVAALALALNQLV
Ga0209382_104495103	3300027909	Populus Rhizosphere	MNTVRSRRDPGPPIVGQVPASHPTLPDDREHRDIATRQASRPRGGSDEWTLVEFRPARWLVTVLTVLGLWLIGPRVGKRGLLALVWQFAPRRVRLIVGGVAALALIVFVGSVAVLALALI
Ga0307320_103782951	3300028771	Soil	IPPRQASRQRRISDEWTLVEFRPARWLLTALTVLALWLVSPNLGKRGLLDLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALTQLG
Ga0247827_109448292	3300028889	Soil	STTLAIVVQMPASHPTLPDDPRHRAIATRPASRRRPVSDEWTLVEFRPARWLLTALTVFALWLVSPTLGKRGLLALAWQFAPRRLRLVAGGVAALALVVLAGSVAALALALTQLV
Ga0307473_108933781	3300031820	Hardwood Forest Soil	MRVPQRIHPDYRERRDAVTREASGTRHVADDWTLVEFRPARWLLASLTLLAFLLIRPALGKRALLAFAWRFAPKRLRLIAGGLAALAVVVLAGSVAAVVLVLDQLA
Ga0310906_112767392	3300032013	Soil	YHPTLPNDRKHREIATKQARRQRRDGDEWTLVEFRPARWLVTALTVLALWLVSPTLGKRGLLALAWQFAPRRLRLVAGGVAALALVVLAGSVAALALALTQLV
Ga0364923_0054360_249_614	3300034690	Sediment	MTYEERTPALAIVMQMPAPHPMLPDDRKRREITTRPAGEQRSVSDEWTLVEFRPARWLLTALTVLALWLVSPTLGKRGLLGLAWQFAPRRLRLIAGGVAALALVVLAGSVAALALALSQL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080012

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences