Metagenome / Metatranscriptome Family F080229

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080229
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	105 residues
Representative Sequence	EPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
Number of Associated Samples	90
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.61 %
% of genes near scaffold ends (potentially truncated)	66.96 %
% of genes from short scaffolds (< 2000 bps)	87.83 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (16.522 % of family members)
Environment Ontology (ENVO)	Unclassified (28.696 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 40.77% Coil/Unstructured: 59.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
b.1.33.1: Membrane antigen precursor-like	d3pjla_	3pjl	0.80886
b.1.33.0: automated matches	d3lzla_	3lzl	0.75557
b.1.2.1: Fibronectin type III	d1n26a2	1n26	0.73672
b.1.29.5: Complement C3 MG4-like	d3cu7a4	3cu7	0.73309
b.1.18.2: E-set domains of sugar-utilizing enzymes	d1j0ha1	1j0h	0.70741

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF05231	MASE1	7.83
PF09335	SNARE_assoc	4.35
PF01979	Amidohydro_1	3.48
PF00903	Glyoxalase	1.74
PF03544	TonB_C	0.87
PF01584	CheW	0.87
PF12681	Glyoxalase_2	0.87
PF02770	Acyl-CoA_dh_M	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	7.83
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	7.83
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	7.83
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	4.35
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	4.35
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	4.35
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.87
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	92.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	92.17 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	92.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	92.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	92.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_3023429	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1166	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105489391	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	928	Open in IMG/M
3300000550\|F24TB_12304988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300000559\|F14TC_100944129	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1960	Open in IMG/M
3300001431\|F14TB_101402771	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	822	Open in IMG/M
3300004633\|Ga0066395_10125880	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1270	Open in IMG/M
3300004633\|Ga0066395_10803130	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	565	Open in IMG/M
3300005093\|Ga0062594_100054506	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300005289\|Ga0065704_10568134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300005295\|Ga0065707_11018358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	535	Open in IMG/M
3300005332\|Ga0066388_100430075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1963	Open in IMG/M
3300005345\|Ga0070692_11385093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300005363\|Ga0008090_10469921	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300005540\|Ga0066697_10212682	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300005545\|Ga0070695_101583611	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300005546\|Ga0070696_100581086	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	901	Open in IMG/M
3300005552\|Ga0066701_10528189	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	727	Open in IMG/M
3300005614\|Ga0068856_102387452	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	536	Open in IMG/M
3300005764\|Ga0066903_105528128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300006194\|Ga0075427_10026340	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300006845\|Ga0075421_100473113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1493	Open in IMG/M
3300006845\|Ga0075421_101829373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	652	Open in IMG/M
3300006845\|Ga0075421_102216878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	579	Open in IMG/M
3300006846\|Ga0075430_100709164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	829	Open in IMG/M
3300006854\|Ga0075425_101242302	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300006904\|Ga0075424_100132922	All Organisms → cellular organisms → Bacteria	2633	Open in IMG/M
3300006904\|Ga0075424_100172082	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300006914\|Ga0075436_100748869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	726	Open in IMG/M
3300009100\|Ga0075418_10081361	All Organisms → cellular organisms → Bacteria	3444	Open in IMG/M
3300009100\|Ga0075418_10775904	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1035	Open in IMG/M
3300009100\|Ga0075418_12620319	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300009147\|Ga0114129_10085353	All Organisms → cellular organisms → Bacteria	4380	Open in IMG/M
3300009147\|Ga0114129_11975780	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	706	Open in IMG/M
3300009148\|Ga0105243_12290869	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	578	Open in IMG/M
3300009162\|Ga0075423_10284762	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1731	Open in IMG/M
3300009162\|Ga0075423_11927958	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	639	Open in IMG/M
3300009162\|Ga0075423_11974019	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	631	Open in IMG/M
3300009792\|Ga0126374_11231011	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300009792\|Ga0126374_11814775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300010043\|Ga0126380_10546900	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	900	Open in IMG/M
3300010043\|Ga0126380_11284062	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	636	Open in IMG/M
3300010047\|Ga0126382_10787343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	809	Open in IMG/M
3300010102\|Ga0127453_1102435	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	521	Open in IMG/M
3300010109\|Ga0127497_1007576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	656	Open in IMG/M
3300010154\|Ga0127503_10879628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300010359\|Ga0126376_10163768	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1799	Open in IMG/M
3300010360\|Ga0126372_10022349	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3764	Open in IMG/M
3300010360\|Ga0126372_10617388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1043	Open in IMG/M
3300010360\|Ga0126372_12555541	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	562	Open in IMG/M
3300010362\|Ga0126377_10804559	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	998	Open in IMG/M
3300010362\|Ga0126377_10872793	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	961	Open in IMG/M
3300010362\|Ga0126377_13025685	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	543	Open in IMG/M
3300010362\|Ga0126377_13037249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
3300010366\|Ga0126379_12306614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	638	Open in IMG/M
3300010398\|Ga0126383_12826142	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300010398\|Ga0126383_13116178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	541	Open in IMG/M
3300010400\|Ga0134122_12184229	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	596	Open in IMG/M
3300010868\|Ga0124844_1053989	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1424	Open in IMG/M
3300010868\|Ga0124844_1231680	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300012199\|Ga0137383_10649795	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	771	Open in IMG/M
3300012200\|Ga0137382_10184432	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1429	Open in IMG/M
3300012205\|Ga0137362_10259326	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1502	Open in IMG/M
3300012208\|Ga0137376_11393739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300012356\|Ga0137371_10835007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	701	Open in IMG/M
3300012359\|Ga0137385_10652728	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	881	Open in IMG/M
3300012396\|Ga0134057_1184023	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	734	Open in IMG/M
3300012685\|Ga0137397_10473394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	933	Open in IMG/M
3300012930\|Ga0137407_12333849	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	511	Open in IMG/M
3300012960\|Ga0164301_10773990	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	731	Open in IMG/M
3300015372\|Ga0132256_100053022	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3776	Open in IMG/M
3300015373\|Ga0132257_101090154	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1008	Open in IMG/M
3300015374\|Ga0132255_100172212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3041	Open in IMG/M
3300016319\|Ga0182033_11006718	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300016371\|Ga0182034_10843654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	786	Open in IMG/M
3300017939\|Ga0187775_10230255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	702	Open in IMG/M
3300018081\|Ga0184625_10486395	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300025907\|Ga0207645_11157050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300025940\|Ga0207691_10631301	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	906	Open in IMG/M
3300025942\|Ga0207689_10144734	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1958	Open in IMG/M
3300026088\|Ga0207641_12570322	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	507	Open in IMG/M
3300026089\|Ga0207648_12264862	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	504	Open in IMG/M
3300026328\|Ga0209802_1005093	All Organisms → cellular organisms → Bacteria	8490	Open in IMG/M
3300026328\|Ga0209802_1015373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4350	Open in IMG/M
3300026335\|Ga0209804_1055160	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1925	Open in IMG/M
3300027681\|Ga0208991_1167003	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	647	Open in IMG/M
3300027873\|Ga0209814_10008409	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	4026	Open in IMG/M
3300027873\|Ga0209814_10292779	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	708	Open in IMG/M
3300027874\|Ga0209465_10074099	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1652	Open in IMG/M
3300027874\|Ga0209465_10138241	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1207	Open in IMG/M
3300028381\|Ga0268264_10609583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1077	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10019514	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1746	Open in IMG/M
3300031668\|Ga0318542_10563821	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300031720\|Ga0307469_10323750	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1281	Open in IMG/M
3300031720\|Ga0307469_10513876	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1053	Open in IMG/M
3300031724\|Ga0318500_10269637	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	829	Open in IMG/M
3300031740\|Ga0307468_100157303	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1470	Open in IMG/M
3300031740\|Ga0307468_101987456	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	556	Open in IMG/M
3300031771\|Ga0318546_10033344	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3087	Open in IMG/M
3300031819\|Ga0318568_10322743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	960	Open in IMG/M
3300031820\|Ga0307473_10447590	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	859	Open in IMG/M
3300031831\|Ga0318564_10526162	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300031833\|Ga0310917_10248652	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1196	Open in IMG/M
3300031833\|Ga0310917_11073543	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300031845\|Ga0318511_10259038	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	781	Open in IMG/M
3300031845\|Ga0318511_10347622	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300031846\|Ga0318512_10363610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	725	Open in IMG/M
3300031894\|Ga0318522_10411836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300031897\|Ga0318520_10479529	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300032001\|Ga0306922_10188870	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2210	Open in IMG/M
3300032012\|Ga0310902_10584992	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	739	Open in IMG/M
3300032066\|Ga0318514_10569892	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	603	Open in IMG/M
3300032089\|Ga0318525_10401293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	703	Open in IMG/M
3300032094\|Ga0318540_10267594	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	825	Open in IMG/M
3300032174\|Ga0307470_10646615	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	798	Open in IMG/M
3300032205\|Ga0307472_100041462	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2786	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.04%
Host-Associated	Host-Associated	26.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.30%
Plants	Host-Associated → Plants	26.96%
Aquatic	Environmental → Aquatic	1.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.96%
Freshwater	Environmental → Aquatic → Freshwater	0.87%
Sediment	Environmental → Aquatic → Sediment	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.39%
Loam	Environmental → Terrestrial → Soil → Loam	13.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%
Sand	Environmental → Terrestrial → Soil → Sand	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.35%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	16.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.22%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.61%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.87%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010102	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010109	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0174.00005280	2162886013	Switchgrass Rhizosphere	MTSPRFPDLPRVDVSREPGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP
INPhiseqgaiiFebDRAFT_1054893912	3300000364	Soil	VAPPPPSEPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLADAEVLLLARMPDGTVENVRMDFYPDHGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP*
F24TB_123049881	3300000550	Soil	MSTPVPRQAAVAPPSEPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFXXXRGTYRGSLPTASSPVDLRVRVITGDKR
F14TC_1009441293	3300000559	Soil	MSTPVPRQAAVAPPSEPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPERGTYRGSLPTASSPVDLRVRVITGDKRVEVPIGP*
F14TB_1014027712	3300001431	Soil	RSSEPVRPGPSAPAPREAAVVPQPEPVMRASSPRFAGLPRVELVREGSASGGAYAVKIVDPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSTPVDLRVRVITGDKRVEVPIGP*
Ga0066395_101258802	3300004633	Tropical Forest Soil	PPRQVAALPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFSPDHGTYRGSLRSTPLDMRVRVITGDKRVEIPLGP*
Ga0066395_108031302	3300004633	Tropical Forest Soil	PAEPGSRLSSPRFAGLPRVELSREAGSASGAYTVRIMDPAGKPLGDAEVLLLARMPDGTVENVRMNFYPDHGTYRGALPPSHSSPVDLRVRVITGDKRVEIPLGR*
Ga0062594_1000545061	3300005093	Soil	GSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGSKRIEIPVEP*
Ga0065704_105681342	3300005289	Switchgrass Rhizosphere	QPEPVMRASSPRFAGLPRVELVREGSASGGAYAVKIVDPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSTPVDLRVRVITGDKRVEVPIGP*
Ga0065707_110183581	3300005295	Switchgrass Rhizosphere	PPSESTGRLMTSPRFPDLPRVDVSREPGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0066388_1004300752	3300005332	Tropical Forest Soil	MTPPRSEPMSRLTSPRFAGVPSVDVSREPGSPPGMYSARILDPAGRPLSDADVLLLARMSDGTVENVRMQFSPDRGTYHGALPPTRSSLVDLRVRVITGDKRIEIPVGP*
Ga0070692_113850931	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	PDLPRVDVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGSKRIEIPVEP*
Ga0008090_104699212	3300005363	Tropical Rainforest Soil	SVSPRFAGLPRVELSREGGASATYSARIVDPTGKPLPDAEVLLLARMADGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP*
Ga0066697_102126821	3300005540	Soil	SPRFAGLPRVELSREPGTPNGTYTVRIVDPGGKPLGDAEVLLLARMPDGTVENIRMDFYPDHGTYRGALPPTRSSPVDLRVRVITGDKRVEIPLGP*
Ga0070695_1015836111	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VSRTIAPRFAGLPRVELIREGGSSGSYAVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPEQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0070696_1005810861	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPRQAAVAPPSERVSRSVSPRFAGLPRVELSREAGASGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDQGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP*
Ga0066701_105281891	3300005552	Soil	PEPVSRTIAPRFAGLPRIELIREASASGGAYAVRIADPTGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0068856_1023874521	3300005614	Corn Rhizosphere	PAPRAAIARSTPVAPAPEPEPVSRSVSPRFAGLPRVELSREPSSAGSTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTTASPVDLRVRVITGDKRVEIPLGP*
Ga0066903_1055281281	3300005764	Tropical Forest Soil	APESPRAGAGTSSASVPSQASVEPTEPVSRSVSPRFAGLPRVELSREGGASATYSARIVDPTGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP*
Ga0075427_100263402	3300006194	Populus Rhizosphere	SAAPRETASATLAPDAVSRTIAPRFAGLPRVELIREGGSSGSYVVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPEQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0075421_1004731132	3300006845	Populus Rhizosphere	MTSPRFPDLPRVDVSREPGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0075421_1018293732	3300006845	Populus Rhizosphere	VVPQPEPVMRASSPRFAGLPRVELVREGSASGGAYAVKIVDPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSTPVDLRVRVITGDKRVEVPIGP*
Ga0075421_1022168782	3300006845	Populus Rhizosphere	MPRPSSAAPRETASATLAPDAVSRTIAPRFAGLPRVELIREGGSSGSYVVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPEQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0075430_1007091642	3300006846	Populus Rhizosphere	FAGLPRVELVREGSASGGAYAVKIVDPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSTPVDLRVRVITGDKRVEVPIGP*
Ga0075425_1012423022	3300006854	Populus Rhizosphere	ESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0075424_1001329225	3300006904	Populus Rhizosphere	RLMTSPRFPDLPRVDVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0075424_1001720821	3300006904	Populus Rhizosphere	PPRSEPTSRFTSPRFAGVPSVDVSREPGSPTGMYSARILDPAGRPLSDADVLLLARMSDGTVENVRMQFSPDRGIYRGALPPTRSSLVDLRVRVITGDKRIEIPVGP*
Ga0075436_1007488692	3300006914	Populus Rhizosphere	SVSPRFAGLPRVELSREPSSAGSTYSARIADPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTTASPVDLRVRVITGDKRVEIPLGP*
Ga0075418_100813611	3300009100	Populus Rhizosphere	APEPVVPPSESTGRLMTSPRFPDLPRVDVSREPGGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0075418_107759042	3300009100	Populus Rhizosphere	VVSRTISPRFAGLPRVELIREGGSSGSYAVKIADPAGKPLADAEVLLIARMADGTLENIRMGFVPEQGAYRGMLPPVRSAPVDLRIRVITGDKRVEI
Ga0075418_126203191	3300009100	Populus Rhizosphere	LPRIELMREGSASGGSYAVRIADPAGRPLPDAEVLLIARMADGTTENVRMGFVPEHGTYRGMLPPVRSAPIDLRIRVITGDKRVEIPVGP*
Ga0114129_100853531	3300009147	Populus Rhizosphere	VSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGSKRIEIPVEP*
Ga0114129_119757801	3300009147	Populus Rhizosphere	MTSPRFPDLPRVDVSREPGGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0105243_122908691	3300009148	Miscanthus Rhizosphere	SMSTPVPRQAAVAPPSEPVSRSVSPRFAGLPRVELSHEAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGALPTASSPVDLRVRVITGDKRVEIPLGP*
Ga0075423_102847624	3300009162	Populus Rhizosphere	TSPRFRDLPRVDVSRESGSPNGIYSARIVDPGARPITDADVLLLAGMSDGTVENVMMQFWPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0075423_119279581	3300009162	Populus Rhizosphere	MTSPRFPDLPRVDVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGVYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0075423_119740192	3300009162	Populus Rhizosphere	VVSRTISPRFAGLPRVELIREGGSSGSYAVKIADPAGKPLADAEVLLIARMADGTLENIRMGFVPEQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0126374_112310111	3300009792	Tropical Forest Soil	VSEPAARRTVTAVPPPAEPGSRLSSPRFAGLPRVELSREAGSASGTYTVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMNFYPDHGTYRGSLPPTRSAPLDLRVRVITGDKRVEIPLGP
Ga0126374_118147752	3300009792	Tropical Forest Soil	FPDLPRVDVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0126380_105469001	3300010043	Tropical Forest Soil	VSPRFAGLPRVELSRESGTGNGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFYPDHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP*
Ga0126380_112840622	3300010043	Tropical Forest Soil	VSEPAARRTVTAVPPPAEPGSRLSSPRFAGLPRVELSREAGSASGAYTVRIMDPAGKPLGDAEVLLLARMPDGTVENVRMNFYPDHGTYRGALPPSHSSPVDLRVRVITGDKRVEIPLGP
Ga0126382_107873432	3300010047	Tropical Forest Soil	VPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFYPDHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP*
Ga0127453_11024351	3300010102	Grasslands Soil	LVSPRFAGLPRVELSREPGAPGGTYAVRIADPAGKLLGDAEVLLLARMPDGTVENVRMNFSPDHGTYRGTLPPTRSSPVDLRVRVITGDKRVEIPLGP*
Ga0127497_10075761	3300010109	Grasslands Soil	LVSPRFAGLPRVELSREPGTPNGTYTVRIVDPGGKPLGDAEVLLLARMPDGTVENIRMDFYPDHGTYRGALPPTRSSPVDLRVRVITGDKRVEIPLGP*
Ga0127503_108796281	3300010154	Soil	PSEPLSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTTSSPLDLRVRVITGDKRVEIPVGP*
Ga0126376_101637682	3300010359	Tropical Forest Soil	VSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0126372_100223491	3300010360	Tropical Forest Soil	APAEPGSRLVSPRFAGLPRVELSREPGTGNGTYVVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP*
Ga0126372_106173882	3300010360	Tropical Forest Soil	VTEPAARRTVTAVPPPAEPGSRLSSPRFAGLPRVELSREEGSASGTYTVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMNFYPDHGTYRGALPPSHSSPVDLRVRVITGDKRVEIPLGR
Ga0126372_125555411	3300010360	Tropical Forest Soil	VSEPAARRTVTAVPPPAEPGSRLSSPRFAGLPRVELSREAGSASGTYAVRIVDPAGRTLPDAEVLLLARMPDGTVENVRMNFYPDHGTYRGALPPTRSSPVDLRVRVITGDKRVEIPLGP
Ga0126377_108045592	3300010362	Tropical Forest Soil	VSEPAARRAVTAVPPPAEPGSRLTSPRFAGLPRVELSREAGTASGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMHFYPDGTYRGTLPPTRSSPLDLRVRVITGDKRVEIPLGP*
Ga0126377_108727931	3300010362	Tropical Forest Soil	VPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYVVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP*
Ga0126377_130256851	3300010362	Tropical Forest Soil	SPAPPKSEPVSRFTSPRFAGVPSVDVSREPGSAPEAYSARIVDPAGRPLADADVLLLARMSDGTVENVRMQFVPDRGTYRGALPPTRSSLVDLRVRVITGDKRIEIPVGP*
Ga0126377_130372492	3300010362	Tropical Forest Soil	VSPRFAGLPRVELSREPSAAGSTYSARIVDPAGKPLPDADVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTTASPVDLRVRVNTGDKRVEIPLSP*
Ga0126379_123066141	3300010366	Tropical Forest Soil	LPRVDVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0126383_128261422	3300010398	Tropical Forest Soil	DVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP*
Ga0126383_131161781	3300010398	Tropical Forest Soil	ARRTVTSVPPPAEPGSRLSSPRFAGLPRVELSREEGSASGTYTVRIVDPAGKPLGDAEVLLLARMPDGTVENIRMNFYPDHGTYRGALPPSHSSPVDLRVRVITGDKRVEIPLGR*
Ga0134122_121842291	3300010400	Terrestrial Soil	MPRASSSAPRETASATPAPDAVSRTIAPRFAGLPRVELIREGGSSGAYAVKIADPAGKPLGDAEVLLIARMADGTLENVRMGFVPEQGAYRGTLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0124844_10539891	3300010868	Tropical Forest Soil	VSEPPPRQVAALPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFSPDHGTYRGSLRSTPLDMRIRVITGDKRVEIPLGP*
Ga0124844_12316802	3300010868	Tropical Forest Soil	ALPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFSPDHGTYRGSLRSTPLDMRIRVITGDKRVEIPLGP*
Ga0137383_106497952	3300012199	Vadose Zone Soil	VAPPPSEPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPIDIRVRVITGDKRVEIPLAP*
Ga0137382_101844321	3300012200	Vadose Zone Soil	TPLPRHAAVAPPPPSEPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP*
Ga0137362_102593263	3300012205	Vadose Zone Soil	AAAVPAPAEPVSRLVSPRFAGLPRVELSREPGSPSGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFYPDLGTYRGSLPPTRSSPVDLRVRVITGDKRVEIPLGP*
Ga0137376_113937391	3300012208	Vadose Zone Soil	PRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLAP*
Ga0137371_108350071	3300012356	Vadose Zone Soil	VSRTIAPRFAGLPRVELIREASASGGAYAVRIADPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0137385_106527282	3300012359	Vadose Zone Soil	RFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLAP*
Ga0134057_11840231	3300012396	Grasslands Soil	VSRTIAPRFAGLPRIELIREASASGGAYAVRIADPTGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0137397_104733941	3300012685	Vadose Zone Soil	VSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP*
Ga0137407_123338491	3300012930	Vadose Zone Soil	VLRTIAPRFAGLPRVELIREASASGGAYAVRIADPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGVLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0164301_107739901	3300012960	Soil	ETARPSTSTPVQRQTAVAPPPPSEPVSRSVSPRFAGLPRVELSREAGSSGGTYSVRIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP*
Ga0132256_1000530224	3300015372	Arabidopsis Rhizosphere	SRTIAPRFAGLPRVELIREGGSSGAYAVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPDQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0132257_1010901541	3300015373	Arabidopsis Rhizosphere	VSRTIAPRFAGLPRVELIREGGSSGAYAVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPDQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0132255_1001722123	3300015374	Arabidopsis Rhizosphere	MPRPSSAAPRETASATVAPDTVSRTIAPRFAGLPRVELIREGGSSGAYAVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPDQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP*
Ga0182033_110067182	3300016319	Soil	TVEPSEPVSRSVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0182034_108436542	3300016371	Soil	AGGGTPSGRVPSQATVEPPEPVSRSVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0187775_102302551	3300017939	Tropical Peatland	QPGAGRRAPSPPTSAQSAMATTPDPVSRSVSPRFAGLPRVELSREPGATGGTYSAHIVDPAGKPLPDAEVLLLAHMADGTVANVRMDFYPDRGTYRGSLPTASTPVDLRMRVITGDKRVEIPLGP
Ga0184625_104863951	3300018081	Groundwater Sediment	FPLTEVGAMSRLTSPRFAGLPRVDVSREPGSPTGIYSARIVDPAGRPLRDADVLLLARMSDGTVENVRMEFVPDRGTYRGALPPTRSSFIDLRVRVSTGDKRIDIPVEP
Ga0207645_111570501	3300025907	Miscanthus Rhizosphere	SEPVSRSVSPRFAGLPRVELSHEAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGALPTASSPVDLRVRVITGDKRVEIPLGP
Ga0207691_106313011	3300025940	Miscanthus Rhizosphere	MTSPRFPDLPRVDVSRESGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFLPDRGVYRGALPATRSSIVYLRLRVITGSKRIEIPVEP
Ga0207689_101447342	3300025942	Miscanthus Rhizosphere	VPRQAAVAPPPPSEPLSRSVSPRFAGLPRVELSREAGASGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDQGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
Ga0207641_125703221	3300026088	Switchgrass Rhizosphere	GLPRVELSREAGASGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDQGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
Ga0207648_122648621	3300026089	Miscanthus Rhizosphere	PVPRQAAVAPPPPSEPLSRSVSPRFAGLPRVELSREAGASGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGALPTASSPVDLRVRVITGDKRVEIPLGP
Ga0209802_100509311	3300026328	Soil	PSTPPPREAASVSSPPEAVSRTIAPRFAGLPRVELIREASASGGAYAVRIADPAGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGVLPPVRSAPVDLRIRVITGDKRVEIPIGP
Ga0209802_10153734	3300026328	Soil	ASVPSSPEPVSRTIAPRFAGLPRIELIREASASGGAYAVRIADPTGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGTLPPVRSAPVDLRIRVITGDKRVEIPIGP
Ga0209804_10551601	3300026335	Soil	AGLPRVELIREASASGGAYAVRIADPAGKPLSDAEVLLIARMADGTLENVRMGFVPEHGTYRGMLPPVRSAPVDLRIRVITGDKRVEIPIGP
Ga0208991_11670031	3300027681	Forest Soil	VELIREGSASGGAYSVRIADPSGKPLSDAEVLLIARMADGTLENVRMGFVPEQGTYRGMLPPVRSAPVDLRIRVITGDKRVEIPVGP
Ga0209814_100084091	3300027873	Populus Rhizosphere	MPRPSSAAPRETASATLAPDAVSRTIAPRFAGLPRVELIREGGSSGSYVVKIADPAGKPLGDAEVLLIARMADGTLENVRMGYVPEQGAYRGMLPPVRSAPVDLRIRVITGDKRVEIPIG
Ga0209814_102927791	3300027873	Populus Rhizosphere	RLMTSPRFPDLPRVDVSREPGSPNGIYSARIVDPAGRPLTDADVLLLARMSDGTVENVMMQFSPDRGIYRGALPATRSSIVYLRLRVITGNKRIEIPVEP
Ga0209465_100740993	3300027874	Tropical Forest Soil	PPPRQVAALPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMPDGTVENVRMDFSPDHGTYRGSLRSTPLDMRVRVITGDKRVEIPLGP
Ga0209465_101382411	3300027874	Tropical Forest Soil	VPPPAEPGSRLSSPRFAGLPRVELSREAGSASGAYTVRIMDPAGKPLGDAEVLLLARMPDGTVENVRMNFYPDHGTYRGALPPSHSSPVDLRVRVITGDKRVEIPLGR
Ga0268264_106095833	3300028381	Switchgrass Rhizosphere	STSTPVPRQAAVAPPPPSEPLSRSVSPRFAGLPRVELSREAGASGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDQGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
(restricted) Ga0255310_100195143	3300031197	Sandy Soil	EPVSRAISPRFTGLPRVELTREPGASSGAYAVRIADPAGKPLADAEVLLLARMADGTVENVRMSFFPDQGTYRGTLPPTRSAPLDLRIRVITGDKRVEVPLGPGDAR
Ga0318542_105638211	3300031668	Soil	AGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0307469_103237502	3300031720	Hardwood Forest Soil	MPSVDVSREPGSPTGIYSARIVDPAGRPLGDADVLLLARMSDGTVENVRMEFSPDRGTFRGALPPTRSSLVDLRVRVITGDRRIETPVGP
Ga0307469_105138761	3300031720	Hardwood Forest Soil	HAARLVSPRFAGLPRVELSREPGSADGTYAVRIIDPAGQPMSNAEVLLMARMPDGTVENVRLDFYPDRGTYRGALPPTSSSPMDLRVRVITGDKRVEIPLRP
Ga0318500_102696372	3300031724	Soil	RFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0307468_1001573032	3300031740	Hardwood Forest Soil	MPRQAAVAPPSERVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVHMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
Ga0307468_1019874561	3300031740	Hardwood Forest Soil	MSRLTSPRFAGLPRVDVSRERGSPTGIYSARIVDPAGRPLRDADVLLLARMSDGTVENVRMEFVQDRGTYRGALPPTRSSFIDLRVRVSTGDKRIEIPVEP
Ga0318546_100333441	3300031771	Soil	PPPRQIAAPPAPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0318568_103227431	3300031819	Soil	FAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0307473_104475902	3300031820	Hardwood Forest Soil	PSKSEPTAAARSEPTAPPRSEPTSPPRSEPTSRFTSPRFAGVPSVDVSREPGSPTGMYSARILDPAGRPLSDADVLLLARMSDGTVENVRMQFSPDRGTYRGALPPTRSSLVDLRVRVITGDKRIEIPVGP
Ga0318564_105261622	3300031831	Soil	IRAPPAPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0310917_102486521	3300031833	Soil	VSEPPPRQIAAPPAPAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0310917_110735431	3300031833	Soil	GLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0318511_102590382	3300031845	Soil	PAEPGSRLVSPRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0318511_103476221	3300031845	Soil	SRSVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0318512_103636101	3300031846	Soil	SEPVSRSVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMSFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0318522_104118361	3300031894	Soil	SASAPSQATVEPSEPVSRSVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0318520_104795291	3300031897	Soil	VSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0306922_101888701	3300032001	Soil	ESGAPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0310902_105849921	3300032012	Soil	EPVSRSVSPRFAGLPRVELSREAGSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
Ga0318514_105698922	3300032066	Soil	SVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0318525_104012931	3300032089	Soil	STTSAPESPRAGAGTPSASAPSQATVEPSEPVSRSVSPRFAGLPRVELSREGGASATYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMNFYPDRGTYRGSLPTTSAPVDLRVRVITGDKRVEIPLGP
Ga0318540_102675942	3300032094	Soil	PRFAGLPRVELSREPGTGNGTYAVRIVDPAGKPLGDAEVLLLARMSDGTVENVRMDFYPEHGTYRGSLRSTPLDLRVRVITGDKRVEIPLGP
Ga0307470_106466152	3300032174	Hardwood Forest Soil	MPRQAAVAPPSERVSRSVSPRFPGLPRVELSREAGSSGGTYSARIVDPAGRPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP
Ga0307472_1000414623	3300032205	Hardwood Forest Soil	VPRQTAVAPPPSEPVSRSVSPRFAGLPRVELSREASSSGGTYSARIVDPAGKPLPDAEVLLLARMPDGTVENVRMDFYPDRGTYRGSLPTASSPVDIRVRVITGDKRVEIPLGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters