Metagenome Family F080311

Basic Information
Family ID	F080311
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	59 residues
Representative Sequence	YHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Number of Associated Samples	96
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	85.22 %
% of genes from short scaffolds (< 2000 bps)	81.74 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Most Common Taxonomy
Group	Unclassified (50.435 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (16.522 % of family members)
Environment Ontology (ENVO)	Unclassified (25.217 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.957 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.10% β-sheet: 0.00% Coil/Unstructured: 75.90%
Feature Viewer

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Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00593	TonB_dep_Rec	14.78
PF02530	Porin_2	6.96
PF07715	Plug	3.48
PF04392	ABC_sub_bind	2.61
PF01494	FAD_binding_3	2.61
PF12680	SnoaL_2	1.74
PF01522	Polysacc_deac_1	1.74
PF01258	zf-dskA_traR	1.74
PF01070	FMN_dh	1.74
PF01875	Memo	1.74
PF13727	CoA_binding_3	0.87
PF09694	Gcw_chp	0.87
PF13699	DUF4157	0.87
PF07647	SAM_2	0.87
PF04226	Transgly_assoc	0.87
PF10605	3HBOH	0.87
PF00067	p450	0.87
PF08534	Redoxin	0.87
PF13181	TPR_8	0.87
PF01654	Cyt_bd_oxida_I	0.87
PF12551	PHBC_N	0.87
PF09939	DUF2171	0.87
PF13505	OMP_b-brl	0.87
PF00857	Isochorismatase	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3637	Opacity protein LomR and related surface antigens	Cell wall/membrane/envelope biogenesis [M]	6.96
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	5.22
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	2.61
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	2.61
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	2.61
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.61
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	1.74
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	1.74
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	1.74
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	1.74
COG1734	RNA polymerase-binding transcription factor DksA	Transcription [K]	1.74
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.87
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.87
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.87
COG2124	Cytochrome P450	Defense mechanisms [V]	0.87
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
All Organisms	root	All Organisms	49.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
cellular organisms	root	All Organisms → cellular organisms	49.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.00 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.61 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.00 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.87 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.87 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.35 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.87 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.87 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.61 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.87 %
Ponticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus	0.87 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.43 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.61 %
Ponticoccus alexandrii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus → Ponticoccus alexandrii	0.87 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.87 %
Rhodomicrobium vannielii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	0.87 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.87 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459020\|G1P06HT02G4Q38	Not Available	598	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c007394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	969	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1001579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3634	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1010240	All Organisms → cellular organisms → Bacteria → Proteobacteria	1796	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10008449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2450	Open in IMG/M
3300004157\|Ga0062590_102710473	Not Available	528	Open in IMG/M
3300004479\|Ga0062595_101615940	Not Available	605	Open in IMG/M
3300005332\|Ga0066388_100008516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7697	Open in IMG/M
3300005332\|Ga0066388_104873844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	682	Open in IMG/M
3300005335\|Ga0070666_10397638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300005340\|Ga0070689_100564877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300005436\|Ga0070713_101641183	Not Available	624	Open in IMG/M
3300005437\|Ga0070710_10328947	Not Available	1005	Open in IMG/M
3300005437\|Ga0070710_11411627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	521	Open in IMG/M
3300005438\|Ga0070701_10172125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1262	Open in IMG/M
3300005439\|Ga0070711_100340280	Not Available	1203	Open in IMG/M
3300005440\|Ga0070705_100528957	Not Available	900	Open in IMG/M
3300005444\|Ga0070694_101744948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	530	Open in IMG/M
3300005459\|Ga0068867_100170561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1723	Open in IMG/M
3300005549\|Ga0070704_100286618	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300006047\|Ga0075024_100444033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	669	Open in IMG/M
3300006050\|Ga0075028_100512862	Not Available	701	Open in IMG/M
3300006175\|Ga0070712_100644413	Not Available	900	Open in IMG/M
3300006354\|Ga0075021_10798015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	610	Open in IMG/M
3300006805\|Ga0075464_10743612	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300006844\|Ga0075428_100441759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1393	Open in IMG/M
3300006844\|Ga0075428_102175645	Not Available	572	Open in IMG/M
3300009094\|Ga0111539_11805643	Not Available	709	Open in IMG/M
3300009100\|Ga0075418_11661451	Not Available	694	Open in IMG/M
3300009174\|Ga0105241_11769957	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300009174\|Ga0105241_12581407	Not Available	510	Open in IMG/M
3300009177\|Ga0105248_11660668	Not Available	724	Open in IMG/M
3300009545\|Ga0105237_12767527	Not Available	502	Open in IMG/M
3300009792\|Ga0126374_10934988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	675	Open in IMG/M
3300010043\|Ga0126380_10027084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ponticoccus → Ponticoccus alexandrii	2844	Open in IMG/M
3300010043\|Ga0126380_10747139	Not Available	793	Open in IMG/M
3300010043\|Ga0126380_11544899	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300010043\|Ga0126380_11763184	Not Available	558	Open in IMG/M
3300010043\|Ga0126380_12139648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	516	Open in IMG/M
3300010046\|Ga0126384_11174360	All Organisms → cellular organisms → Bacteria → Proteobacteria	707	Open in IMG/M
3300010047\|Ga0126382_10585169	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300010358\|Ga0126370_10194314	All Organisms → cellular organisms → Bacteria → Proteobacteria	1526	Open in IMG/M
3300010361\|Ga0126378_12015644	Not Available	658	Open in IMG/M
3300010362\|Ga0126377_10216758	Not Available	1844	Open in IMG/M
3300010362\|Ga0126377_10919768	Not Available	938	Open in IMG/M
3300010373\|Ga0134128_10039549	All Organisms → cellular organisms → Bacteria → Proteobacteria	5501	Open in IMG/M
3300010376\|Ga0126381_100815735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1340	Open in IMG/M
3300010376\|Ga0126381_102398425	Not Available	757	Open in IMG/M
3300010376\|Ga0126381_105140033	Not Available	501	Open in IMG/M
3300010398\|Ga0126383_12245114	Not Available	632	Open in IMG/M
3300011000\|Ga0138513_100070977	Not Available	537	Open in IMG/M
3300011119\|Ga0105246_11427226	Not Available	647	Open in IMG/M
3300012517\|Ga0157354_1070428	Not Available	546	Open in IMG/M
3300012941\|Ga0162652_100025305	Not Available	858	Open in IMG/M
3300012948\|Ga0126375_10849694	Not Available	728	Open in IMG/M
3300012951\|Ga0164300_10533700	Not Available	678	Open in IMG/M
3300012957\|Ga0164303_10066024	Not Available	1669	Open in IMG/M
3300012960\|Ga0164301_10807411	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300012960\|Ga0164301_11389525	Not Available	573	Open in IMG/M
3300012961\|Ga0164302_10030189	Not Available	2480	Open in IMG/M
3300012961\|Ga0164302_10321216	Not Available	1021	Open in IMG/M
3300012971\|Ga0126369_11853343	Not Available	692	Open in IMG/M
3300012985\|Ga0164308_10039852	Not Available	2950	Open in IMG/M
3300012985\|Ga0164308_10296338	Not Available	1282	Open in IMG/M
3300012986\|Ga0164304_11215755	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300012987\|Ga0164307_10195239	Not Available	1373	Open in IMG/M
3300012988\|Ga0164306_11473616	Not Available	582	Open in IMG/M
3300012989\|Ga0164305_10037966	All Organisms → cellular organisms → Bacteria → Proteobacteria	2712	Open in IMG/M
3300013308\|Ga0157375_10891461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034	Open in IMG/M
3300015371\|Ga0132258_10117659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6308	Open in IMG/M
3300015371\|Ga0132258_11168818	All Organisms → cellular organisms → Bacteria → Proteobacteria	1945	Open in IMG/M
3300015373\|Ga0132257_101194132	Not Available	963	Open in IMG/M
3300015374\|Ga0132255_100457776	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300016270\|Ga0182036_10377074	Not Available	1100	Open in IMG/M
3300017792\|Ga0163161_11425328	Not Available	606	Open in IMG/M
3300017947\|Ga0187785_10766341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	511	Open in IMG/M
3300022694\|Ga0222623_10036143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1887	Open in IMG/M
3300025580\|Ga0210138_1022789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1333	Open in IMG/M
3300025898\|Ga0207692_11061790	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300025906\|Ga0207699_10875626	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300025912\|Ga0207707_10995368	Not Available	688	Open in IMG/M
3300025914\|Ga0207671_10139039	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300025934\|Ga0207686_10886297	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300025937\|Ga0207669_10455905	Not Available	1014	Open in IMG/M
3300025972\|Ga0207668_11044295	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300026067\|Ga0207678_11552617	Not Available	584	Open in IMG/M
3300026849\|Ga0207804_105800	Not Available	1193	Open in IMG/M
3300026889\|Ga0207745_1006599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181	Open in IMG/M
3300027000\|Ga0207803_1013626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1114	Open in IMG/M
3300027478\|Ga0207448_104209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	512	Open in IMG/M
3300027516\|Ga0207761_1074835	Not Available	658	Open in IMG/M
3300027915\|Ga0209069_10570158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	648	Open in IMG/M
3300028791\|Ga0307290_10045856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1572	Open in IMG/M
3300028828\|Ga0307312_10212871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1243	Open in IMG/M
3300028885\|Ga0307304_10022483	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300031199\|Ga0307495_10002393	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2094	Open in IMG/M
3300031231\|Ga0170824_116574872	Not Available	979	Open in IMG/M
3300031572\|Ga0318515_10406904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	728	Open in IMG/M
3300031879\|Ga0306919_10699273	Not Available	781	Open in IMG/M
3300031944\|Ga0310884_10851480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	560	Open in IMG/M
3300031959\|Ga0318530_10359323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	603	Open in IMG/M
3300032059\|Ga0318533_10893408	Not Available	652	Open in IMG/M
3300032955\|Ga0335076_10003924	All Organisms → cellular organisms → Bacteria	14999	Open in IMG/M
3300034090\|Ga0326723_0001052	All Organisms → cellular organisms → Bacteria	10174	Open in IMG/M
3300034090\|Ga0326723_0081173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1390	Open in IMG/M
3300034090\|Ga0326723_0098446	Not Available	1263	Open in IMG/M
3300034090\|Ga0326723_0356799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	660	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.52%
Host-Associated	Host-Associated	22.61%
Engineered	Engineered	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.43%
Plants	Host-Associated → Plants	22.61%
Aquatic	Environmental → Aquatic	6.09%
Solid Waste	Engineered → Solid Waste	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.96%
Sediment	Environmental → Aquatic → Sediment	4.35%
Peat	Environmental → Terrestrial → Peat	3.48%
Marine	Environmental → Aquatic → Marine	1.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.74%
Grass	Engineered → Solid Waste → Grass	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.22%
Loam	Environmental → Terrestrial → Soil → Loam	17.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.35%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.61%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.74%
Coastal	Environmental → Aquatic → Marine → Coastal	0.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.87%
Composting	Engineered → Solid Waste → Grass → Composting	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.61%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.87%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.87%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.09%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.35%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.35%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.48%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.74%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.74%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.87%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012517	Unplanted soil (control) microbial communities from North Carolina - M.Soil.6.yng.070610	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025580	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026849	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 46 (SPAdes)	Environmental	Open in IMG/M
3300026889	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57 (SPAdes)	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027478	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK03-E (SPAdes)	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_01693780	2170459020	Switchgrass, Maize And Mischanthus Litter	MNDIVKQAGLYNGCKFHDCGHVEAAVAHITERPISNAAMEKFKSEQSTANYQP
ARcpr5yngRDRAFT_0073941	3300000043	Arabidopsis Rhizosphere	QYGWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
AF_2010_repII_A01DRAFT_10015793	3300000580	Forest Soil	MYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
AF_2010_repII_A100DRAFT_10102402	3300000655	Forest Soil	PPAYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANXQP
AF_2010_repII_A001DRAFT_100084491	3300000793	Forest Soil	WNKAPAYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
JGI25405J52794_100303161	3300003911	Tabebuia Heterophylla Rhizosphere	QAGLYDGCSFRDCGHIEAVRGTHNRAPNLYAAIEKFKIEQSTANYQP*
Ga0062590_1027104731	3300004157	Soil	MSDIIKQAGLYDGCSFRDCGHIEAVRGTHNRAPNLYAAIEKFKTEQSTANYQP*
Ga0062595_1016159401	3300004479	Soil	WNRGPEFVYHMNKIVIQAGLYNGCTFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0062591_1012249762	3300004643	Soil	KAGLYNGCTFRDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0066388_1000085161	3300005332	Tropical Forest Soil	TGWNRGPAFVYHMSDVIKQAGLYDGCSFHDCGHVEAIRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0066388_1048738441	3300005332	Tropical Forest Soil	DNQYGWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0070666_103976381	3300005335	Switchgrass Rhizosphere	EFVYHMDDIVKKAGLYNGCTFRDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0070689_1005648771	3300005340	Switchgrass Rhizosphere	GPEFVYHMDDIVKKAGLYNGCTFRDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYQP
Ga0070713_1016411831	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	HMNDIVEQAGLFNGCSFRDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYRP*
Ga0070710_103289473	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0070710_114116272	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	SYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0070701_101721251	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	YGWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0070711_1003402801	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0070705_1005289572	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0070694_1017449481	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YIGAACDIQTGWNRGPEFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0068867_1001705612	3300005459	Miscanthus Rhizosphere	HYIGAACDNQYGWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0070704_1002866182	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	GDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0066903_1048429411	3300005764	Tropical Forest Soil	GCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0075024_1004440331	3300006047	Watersheds	GWNRGPQFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0075028_1005128621	3300006050	Watersheds	RAPAYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRAPNLYAAVERFKSEQSTTNYQP*
Ga0070712_1006444132	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	YHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0075021_107980152	3300006354	Watersheds	WNRGPQFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0075464_107436122	3300006805	Aqueous	DFMFHVGDLIRQAGLYDGCSFGDCGHVEAVRGLYNKKPNLYASLAKFKSEISTSSYQP*
Ga0075428_1004417591	3300006844	Populus Rhizosphere	VVKQAGLYNGCSFHDCGHIEAIRGTHNRAPNLYAAMEKFKSDQSTANYQP*
Ga0075428_1021756452	3300006844	Populus Rhizosphere	MGDIVKQAGLYNGCSFRDCGHVEAIRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0111539_118056432	3300009094	Populus Rhizosphere	WNRGPAFVYHMDDIVKQAGLYSGCTFRDCGHVEAVRGLHNRAPNLYAAIEKFKSEQSTANYQP*
Ga0075418_116614512	3300009100	Populus Rhizosphere	NRGPEFVYHMGDIVKQAGLYNGCSFRDCGHVEAIRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0105241_117699571	3300009174	Corn Rhizosphere	DIQTGWNRGPEFVYHMNKIVIQAGLYNGCTFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0105241_125814072	3300009174	Corn Rhizosphere	AACDIQTGWNRGPEFVYHMDDIVKKAGLYNGCTFRDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0105248_116606681	3300009177	Switchgrass Rhizosphere	PEFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0105237_121134501	3300009545	Corn Rhizosphere	QAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0105237_127675271	3300009545	Corn Rhizosphere	EFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0126374_109349882	3300009792	Tropical Forest Soil	RGPAFVYHMSDVIKQAGLYDGCSFHDCGHVEAIRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0126380_100270841	3300010043	Tropical Forest Soil	FVYHMDDIVKQAGLYSGCTFRDCGHVEAVRGLHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0126380_107471392	3300010043	Tropical Forest Soil	FVYHMNDIVTQAGLYNGCRFHDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0126380_115448992	3300010043	Tropical Forest Soil	SGSNHYIGAACDNQTGWNKAPTYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0126380_117631842	3300010043	Tropical Forest Soil	LIKQAGLYSGCSFRDCGHVEAIRGTHNTAPNLYAAMEKFKSEQSTANYQP*
Ga0126380_121396482	3300010043	Tropical Forest Soil	RGPAFVYHMSDVIKQAGLYDGCSFHDCGHVEAIRGTHNRPPNLYAAMEKFKSEQSTANYLS*
Ga0126384_111743602	3300010046	Tropical Forest Soil	AYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRAPNLYAAIEKFKSEQSTANYQP*
Ga0126382_105851692	3300010047	Tropical Forest Soil	IRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0126370_101943142	3300010358	Tropical Forest Soil	SGSNHYIGAACDNQYGWNKAPAYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0126378_120156441	3300010361	Tropical Forest Soil	GAACDIQTGWNRGPEFVYHMSDIVKQAGLYDGCTFRDCGHVEALRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0126377_102167581	3300010362	Tropical Forest Soil	PTFVYRMSDIIKQAGLYDGCSFHDCGHVEAIRGTHNKAPNLYAAIEKFKSEQSTANYRP*
Ga0126377_109197682	3300010362	Tropical Forest Soil	TGWNRGPEFVYHMADIVKQAGLYNGCSFRDCGHVEAIRGTHNRSPNLYAALEKFKSEQSTANYQP*
Ga0126379_110074941	3300010366	Tropical Forest Soil	AGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0134128_100395495	3300010373	Terrestrial Soil	FVYHMNDIVMQAGLFNGCSFRDCGHVDAVRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0126381_1008157353	3300010376	Tropical Forest Soil	WNRGPAFVYHISDVVKQAGLYDGCSFHDCGHVEAIRGTHNRAPNLYAALEKFKSEQSTTNYQP*
Ga0126381_1023984252	3300010376	Tropical Forest Soil	WNKAPTYMYHVGDLIRQAGLYDGCSFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0126381_1051400331	3300010376	Tropical Forest Soil	QTGWNRGPEFVYHMSDIVKQAGLYDGCTFRDCGHVEALRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0126383_122451142	3300010398	Tropical Forest Soil	VYHMNDIVTQAGLYNGCTFRDCGHVEAVRGTHNRPPNLYAAMEKFKAEQSTANYQP*
Ga0138513_1000709772	3300011000	Soil	YMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNSPPNLYAAIEKFKSEQSTANYQP*
Ga0105246_114272263	3300011119	Miscanthus Rhizosphere	GDIIKKADLYDGCSFHDCGHIEAVRGTHNKPPALIASLEKFKAEQSTANYQP*
Ga0157354_10704281	3300012517	Unplanted Soil	NRTIPAMYHAGKWIRQAGLYDGCDFGDCGHIEGIKGTHNAKRVPNLYAAMAKFKAEESTANYQP*
Ga0162652_1000253051	3300012941	Soil	MYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNSPPNLYAAIEKFKSEQSTANYQP*
Ga0126375_108496943	3300012948	Tropical Forest Soil	GAACDIQTGWNRGPEFVYHMADIVKQAGLYNGCSFRDCGHVEAIRGTHNRSPNLYAALEKFKSEQSTANYQP*
Ga0164300_105337003	3300012951	Soil	DIQTGWNRGPAFVYHMDDIVKQAGLYSGCTFRDCGHVEAVRGLRNRAPNLYAAIEKFKSEQSTANYQP*
Ga0164303_100660245	3300012957	Soil	FVYHMDEIVKQAGLYSGCAFRDCGHVEAVRGLYNRAPNLYAAMEKFKSEQSTANYQP*
Ga0164301_108074111	3300012960	Soil	IQTGWNRGPAFVYHMDDIVKQAGLYSGCSFRDCGHVEAVRGTHNTAPNLYAALEKFKSEQSTANYQP*
Ga0164301_113895253	3300012960	Soil	IVKQAGLYSGCAFRDCGHVEAVRGLYNRAPNLYAAMEKFKSEQSTANYQP*
Ga0164302_100301891	3300012961	Soil	IQTGWNRGPEFVYHMNDIVMQAGLFNGCSFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0164302_103212163	3300012961	Soil	IQTGWNRGPEFVYHMNKIVIQAGLYNGCTFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0126369_118533432	3300012971	Tropical Forest Soil	YGWNKAPTYMYHVGDLIRQAGLYDGCSFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0164308_100398521	3300012985	Soil	TGWNRGPEFVYHMNDIVMQAGLFNGCSFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0164308_102963381	3300012985	Soil	RGPEFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0164304_112157551	3300012986	Soil	YMYHVGDLIRQAGLYDGCRSGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0164307_101952391	3300012987	Soil	PAFVYHMDDIVKQAGLYSGCTFRDCGHVEAVRGLRNRAPNLYAAIEKFKSEQSTANYQP*
Ga0164306_114736162	3300012988	Soil	WNRGPEFVYHMDDIVKKAGLYNGCTFRDCGHVEAVRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0164305_100379661	3300012989	Soil	DLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0157375_108914611	3300013308	Miscanthus Rhizosphere	HVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP*
Ga0132258_101176591	3300015371	Arabidopsis Rhizosphere	DIVMQAGLFNGCSFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0132258_111688183	3300015371	Arabidopsis Rhizosphere	GPEFVYHMNDIVMQAGLFNGCSFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0132257_1011941322	3300015373	Arabidopsis Rhizosphere	FIGAACDIQTGWNRGPAFVFHMDNIVTQAGLYSGCAFRDCGHVEAIRGTHNRPPNLYAAMEKFKSEQSTANYQP*
Ga0132255_1004577761	3300015374	Arabidopsis Rhizosphere	AGLFNGCSFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP*
Ga0182036_103770741	3300016270	Soil	YHMSDIVKQAGLYNDCSFHDCGHVEAIRGTHNRAPNFYAAMEKFKSEQSTANYQP
Ga0163161_114253281	3300017792	Switchgrass Rhizosphere	DMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0187785_107663412	3300017947	Tropical Peatland	IQTGWNRGPAFVYHMHDLVRQAGLYDGCAFHDCGHVEAVRGTHNRAPNLYAAMEKFKADQSTANYQP
Ga0187765_100374542	3300018060	Tropical Peatland	GLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0222623_100361431	3300022694	Groundwater Sediment	MDDIVKQAGLYSGCTFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0210138_10227893	3300025580	Natural And Restored Wetlands	HVGDLIRRAGLYDGCRFGDCGHVEAVPGTHNRPPNRYAALERFKSEQSTASYQP
Ga0207692_110617901	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	SYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0207699_108756262	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	IGAACDNQYGWNKAPSYMYHVGDLIRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0207707_109953681	3300025912	Corn Rhizosphere	TIPAMYHAGKWIRQAGLYDGCDFGDCGHIEGIKGTHNAKRVPNLYAAMAKFKAEESTANYQP
Ga0207671_101390391	3300025914	Corn Rhizosphere	YHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0207649_104536101	3300025920	Corn Rhizosphere	RQAGLFYGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0207686_108862972	3300025934	Miscanthus Rhizosphere	MQAGLFNGCSFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0207669_104559051	3300025937	Miscanthus Rhizosphere	PEFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0207668_110442952	3300025972	Switchgrass Rhizosphere	RGPAFVYHMDDIVKQAGLYSGCSFRDCGHVEAVRGTHNTAPNLYAALEKFKSEQSTANYQ
Ga0207678_115526171	3300026067	Corn Rhizosphere	QTGWNRGPEFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0207804_1058001	3300026849	Tropical Forest Soil	GAACDIQTGWNRGPEFVYHMSDIVKQAGLYNGCSFHDCGHVEAIRGTHNRAPNFYAAMEKFKSEQSTANYQP
Ga0207745_10065992	3300026889	Tropical Forest Soil	QAGLYNGCSFHDCGHVEAIRGTHNTAPNFYAAMEKFKSEQSTADYQP
Ga0207803_10136261	3300027000	Tropical Forest Soil	VVKQAGLYNGCSFHDCGHVEAIRGTHNTAPNFYAAMEKFKSEQSTADYQP
Ga0207448_1042092	3300027478	Soil	GWNKAPAYMYHVGDLIRQAGLFDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0207761_10748351	3300027516	Tropical Forest Soil	VVKQAGLYNGCSFHDCGHVEAIRGTHNRAPNFYAAMEKFKSEQSTANYQP
Ga0209069_105701581	3300027915	Watersheds	ACDIQTGWNRGPQFVYHMNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0307290_100458562	3300028791	Soil	MNDIVKKAGLYNGCTFRDCGHVEAVRGTHNRAPNLYAAIEKFKSEQSTANYQP
Ga0307312_102128711	3300028828	Soil	EFVYHMNDIVKKAGLYNGCTFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0307304_100224835	3300028885	Soil	MDDIVKKAGLYNGCTFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0307495_100023934	3300031199	Soil	MDDIVKQAGLYSGCTFHDCGHFEAVRGTYNRAPNLYAAMEKFKSEQSTANYQP
Ga0170824_1165748721	3300031231	Forest Soil	IQTGWNRGPEFVYHMDEIVKKAGLYNGCTFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0318515_104069042	3300031572	Soil	IRQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0318496_108347421	3300031713	Soil	AGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0306919_106992731	3300031879	Soil	HMSDIVKQAGLYNGCSFHDCGHVEAIRGTHNRAPNFDAAMEKFKSEQSTANYQP
Ga0310884_108514802	3300031944	Soil	IVKQAGLYSGCTFCDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0318530_103593231	3300031959	Soil	RQAGLYDGCRFGDCGHVEAVRGTHNRPPNLYAAIEKFKSEQSTANYQP
Ga0318533_108934081	3300032059	Soil	ACDIQTGWNRGPDFVYHMSNVVKQAGLYNGCSFHDCGHVEAIRGTHNRAPNFYAAMEKFKSEQSTANYQP
Ga0335076_100039241	3300032955	Soil	HMSDIVEQAGLYNGCSFHDCGHVEAVRGTHNKAPNLYAAMEKFKSEQSTANYQP
Ga0326723_0001052_10006_10167	3300034090	Peat Soil	MNDIVTQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEQFKSEQSTANYQP
Ga0326723_0081173_1194_1355	3300034090	Peat Soil	MNAIVEQAGLYNGCTFRDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0326723_0098446_8_169	3300034090	Peat Soil	MNDIVTQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP
Ga0326723_0356799_13_174	3300034090	Peat Soil	MNDIVEQAGLFNGCSFHDCGHVEAVRGTHNRAPNLYAAMEKFKSEQSTANYQP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080311

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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