Basic Information | |
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Family ID | F080347 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 115 |
Average Sequence Length | 49 residues |
Representative Sequence | MATMSEKPANVFGPTLSRRQFIKAGGILVVGFSFVGPELLKADTAKP |
Number of Associated Samples | 108 |
Number of Associated Scaffolds | 115 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 98.26 % |
% of genes from short scaffolds (< 2000 bps) | 86.09 % |
Associated GOLD sequencing projects | 103 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.40 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (97.391 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.652 % of family members) |
Environment Ontology (ENVO) | Unclassified (20.000 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (43.478 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 25.33% β-sheet: 0.00% Coil/Unstructured: 74.67% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.40 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Bog Peatland Freshwater Sediment Natural And Restored Wetlands Sediment Watersheds Soil Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Peatlands Soil Agricultural Soil Arctic Peat Soil Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Untreated Peat Soil Tropical Peatland Prmafrost Soil Tropical Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Fen Palsa Bog Avena Fatua Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1027J12803_1007349041 | 3300000955 | Soil | MATMSEKTASVLGPTLSRRQFVKAGGALVVGFKLIGPALLKADSAKPATFKNSLDP |
Ga0055438_102563151 | 3300003995 | Natural And Restored Wetlands | MATMSEEARNVFGATLSRRHFMKAGGILAVGFSVVGPDLLKGETAIPSPLKNSLDPTLPGSW |
Ga0062385_101489423 | 3300004080 | Bog Forest Soil | MATMSEKPVNVFGPTLSRRQFVKAGGILVVGFSFVGPEFLRGDAGKPAALKNS |
Ga0062386_1007317181 | 3300004152 | Bog Forest Soil | MATMSEKPGNMFGATLTRRQFVKTGGALVVGFSLVGTEILEADAPKTAAMKNSLDPTLPS |
Ga0066395_108058261 | 3300004633 | Tropical Forest Soil | MATMSERPTTVLGPTLSRRQFIKAGGILVVGFSVAGSELLKGDTAKPT |
Ga0066869_100845871 | 3300005165 | Soil | MATMSEKPTNVFGPTLSRRQFVKAGGALVVGFGLMGPEILKGD |
Ga0070709_109128161 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | MATVSNKPADAFGPTFSRRAFIKTGGVLVVGFGLVGPELLKGDAVK |
Ga0073909_103191111 | 3300005526 | Surface Soil | MATMSERPSNVFGPTLSRRQFVKAGGALVVGFSLVGPEIL |
Ga0070730_110499711 | 3300005537 | Surface Soil | MATMSEKPGNVFGATLSRRQFIKTGGVLVVGFSFVGT |
Ga0070732_107672041 | 3300005542 | Surface Soil | MATMSEKPANVFGPTLSRRQFIKAGGVLVVGFSFVGPELLKADTAKSGTLKNTLDPTLPSSWIE |
Ga0066903_1025187131 | 3300005764 | Tropical Forest Soil | MATMSERPTTVLGPTLSRRQFIKAGGILVVGFSVAGSELLKGNTAKPTTFKNSLDPSLGSSWIEIH |
Ga0068858_1002930971 | 3300005842 | Switchgrass Rhizosphere | MTTVSAKSGNVFGATLSRRQFVKAGGALVVGVSLVGPRFLKGDTAKS |
Ga0075023_1003290521 | 3300006041 | Watersheds | MATMSEKPRNVVGPTLSRRQFVKTGGALVVGFGLIGPKLAKGDATPASLKNSLDPT |
Ga0075015_1001225301 | 3300006102 | Watersheds | MATISEIPGNAFAPTLSRRQFIKAGGILVVGFSFAGPEL |
Ga0075015_1003945692 | 3300006102 | Watersheds | MATMSEKPRDIFGPTLSRRQFVKAGGALVVGFSLIGPELLKADTAKS |
Ga0075014_1005241121 | 3300006174 | Watersheds | MATMSERPRSVFEPTLSRRHFIKAGGVLVVGFSLVGPELLKGD |
Ga0070765_1022404361 | 3300006176 | Soil | MATMGGTIKREKPGNVFVPTLSRRQFIKAGGILVVGFSLAGPELLKGDS |
Ga0097621_1019774291 | 3300006237 | Miscanthus Rhizosphere | MATISEEKLLGPTLSRRQFVKAGGALVVGFKFMGP |
Ga0068871_1010707342 | 3300006358 | Miscanthus Rhizosphere | MATMSTKPENVFGATLSRRQFVKAGGALVVGFGLVGPRFLKGDTPPVPT |
Ga0079220_104866771 | 3300006806 | Agricultural Soil | MATMSEKPSNVFGPTLSRRQFVKTGGALVVGFSVVVPKCLKADAAKP |
Ga0066793_104036741 | 3300009029 | Prmafrost Soil | MATMSEKPENIFGPTLSRRQFVKTGGALVVGFGLIGSKFLKGDAAKTATLK |
Ga0116214_14066572 | 3300009520 | Peatlands Soil | MATMSERPQNVLAPTLSRRQFIKAGGILVVGFSVAGPELLKADTAKPAVLK |
Ga0116138_10143124 | 3300009552 | Peatland | MATMSEKPRNVFGPTLSRRQFVKTGGALVVGFSLVGPKFLKGDAAKTATF |
Ga0116133_10488073 | 3300009623 | Peatland | MATMSERPAVVGPTLSRRQFIKAGGILVVGFSFAGPELLKGHTAKPAVLKNSLDPTLSTSWIEI |
Ga0126380_116067511 | 3300010043 | Tropical Forest Soil | MASMSENPRSVIGPTLSRRQFVKAGGALVVGFKVIGPGVLKANAKPALFMNSLDPSLGSSWVE |
Ga0126384_115699151 | 3300010046 | Tropical Forest Soil | MATMSERPTNVLAPTLSRRQFIKAGGILVVGFSFASPELLKADA |
Ga0126373_122584102 | 3300010048 | Tropical Forest Soil | MATTSENPVNLLGPTLSRRQFIKAGGILVVGFSFAG |
Ga0126373_132344151 | 3300010048 | Tropical Forest Soil | MSENPRTPIGPTLSRRQFVKAGGALIVGFKLIGPGVLKAAEPALF |
Ga0126370_102345841 | 3300010358 | Tropical Forest Soil | MATLSERPANLVGPTLSRRQFVKAGGALVVGFSLVGPEILKAAPSATPATRNTLDPTLGS |
Ga0126372_113496322 | 3300010360 | Tropical Forest Soil | MATVREKTMNVYGATLSRRQFVKAGGALVVGISLVGPEVLKR |
Ga0137776_17384058 | 3300010937 | Sediment | MSEEQQNVFGVTLSRRQFMKTGGVLVVGFSLVGPELLKADAAK |
Ga0137391_111949012 | 3300011270 | Vadose Zone Soil | MATMSSKTSNVFGPTLSRRQFIKAGGALVVGFSFVGPGLLKGDTV |
Ga0137388_113043021 | 3300012189 | Vadose Zone Soil | MPTMNEKPGIVFGAKLSRRQFVKTGGALVVGFSLVGPELLKGDSQKPATLIQPSFREQS* |
Ga0137365_105944461 | 3300012201 | Vadose Zone Soil | MATMSEKPANVFGPTLSRRQFIKAGGALVVGFSFVGPGLLKGETAKSNITKNSLDPTIAS |
Ga0137378_108828753 | 3300012210 | Vadose Zone Soil | MSEKPANVFGPTLSRRQFIKAGGALVVGFSFVSPGLLKGETAK |
Ga0150985_1168023491 | 3300012212 | Avena Fatua Rhizosphere | MATMSEKPGNVFGAKLSRRQFVKTGGVLVVSFSLVGP |
Ga0137397_111471771 | 3300012685 | Vadose Zone Soil | MATMSEKPVSVFGPTLSRRQFVKAGGALVVGFSLVGPEIL |
Ga0137404_122866631 | 3300012929 | Vadose Zone Soil | MTTLSEKPCILRPTLSRRQFIKAGGILVVSFSFARSELLKA |
Ga0137410_116788851 | 3300012944 | Vadose Zone Soil | MATMSEKPVSVFGPTLSRRQFVKAGGALVVGFSLVGPEILKADAAKPAT |
Ga0164302_107709601 | 3300012961 | Soil | MSEKPANAFGPTLSRRGFIKAGGVLVVGFSFVGTELLKGDTAKPAMKNTLDP |
Ga0164309_103256224 | 3300012984 | Soil | MATTSAGKAEKQMNVFGATLSRRQFVKTGGSLVVGVSLVGSGLL |
Ga0157378_116600221 | 3300013297 | Miscanthus Rhizosphere | MATVRTTPENVFGATLSRRQFVKAGGALVVGFSLVGPQ |
Ga0157372_107685351 | 3300013307 | Corn Rhizosphere | MATTSAGKAEKQMNVFGATLSRRQFVKTGGSLVVGVSLVGSGLLKS |
Ga0181531_100193991 | 3300014169 | Bog | MATLSERPFGPTLSRRQFVKAGGALVVGFSVVGPGILKGVAKPEVMKNSLDPTL |
Ga0181522_106452442 | 3300014657 | Bog | MATLSESQQNVFGPTLSRRQFVKTGGALVVGFSVIGPKFLKGDTAKTALVKNSLDPT |
Ga0137409_106595961 | 3300015245 | Vadose Zone Soil | MATMSEKPVSVFGPTLSRRQFVKAGGALVVGFSLVGPEILKADAAKPATYKNSLDPTL |
Ga0182036_119117721 | 3300016270 | Soil | MATMSERPVNVLGPTLSRRQFIKAGGVLVVGFSFVGSELLKADAPKPTALLNS |
Ga0182035_115689112 | 3300016341 | Soil | MATMSERPVNVLGPTLSRRQFIKAGGVLVVGFSFV |
Ga0182039_106814701 | 3300016422 | Soil | MATVREKTMNVYGATLSRRQFVKAGGALVVGISLVGPE |
Ga0182039_108656731 | 3300016422 | Soil | MASMSENPHTAIGPTLSRRQFVKAGGALVVGFKVIGPGILKAAAKPALYMNSLDPALGSS |
Ga0187818_102575212 | 3300017823 | Freshwater Sediment | MATMSEKPGNVFGATLSRRQFMKAGGVLVVGFSFVGTELVKGDAAKPATL |
Ga0187824_100941441 | 3300017927 | Freshwater Sediment | MATMSEKPANTFAPRLSRRQFVKAGGALVVGFGLIGPELLKGDAAKPALFKNSLDPT |
Ga0187806_13046011 | 3300017928 | Freshwater Sediment | MATRSESPVNVFGPTLSRRQFIKAGGVLVVGFSFVGTEVLKGDTAKPA |
Ga0187848_100666813 | 3300017935 | Peatland | MATMSEKNSGAFGPTLSRRQFVKAGGALVVGFSLVG |
Ga0187817_100246331 | 3300017955 | Freshwater Sediment | MATMSEKPANIVGPTLSRRQFMKAGGILVVGFQFVGSELLKADTAKPAAMMNT |
Ga0187805_105384892 | 3300018007 | Freshwater Sediment | MATMSEKPANVFGPTLSRRQFIKAGGILVVGFSFVGPELLKADTAKP |
Ga0187871_104355801 | 3300018042 | Peatland | MATMSEKPSNVIGPTLSRRQFIKAGGVLAVGFSFVGTELLKADTAKPATFKNSLDPTLGSSWIEIH |
Ga0187890_108131851 | 3300018044 | Peatland | MATMSEKNSGAFGPTLSRRQFVKAGGALVVGFSLVGPELLKGDTKSAAMKNSLDPTLLSSWIE |
Ga0187766_106095932 | 3300018058 | Tropical Peatland | MATMSERPVNVLGPTLSRRQFIKAGGVLVVGFSFVGPELVKGDNAKPATFENSLD |
Ga0187784_111176642 | 3300018062 | Tropical Peatland | MATMSERPGNAFGPTLSRRQFVKSGGALIVGFKLIGPQILRANPSRPATMMN |
Ga0193727_10149602 | 3300019886 | Soil | MATMNEVPVNVFGATLSRRQFIRAGGVLVVGGSLIGPKLLKGEGGGSPLR |
Ga0210403_100304701 | 3300020580 | Soil | MATMGGTIKREKPGNVIGPTLSRRQFIKAGGILVVGFSVAGPEFLRGDSAKATTLKNTLDPTLPSSW |
Ga0210395_101355545 | 3300020582 | Soil | MATMGGTIKREKPGNVIGPTLSRRQFIKAGGILVVGFSVAGPEFLRGDSAKATTLKNTL |
Ga0210401_103366301 | 3300020583 | Soil | MATMSEKPANIFGPTLSRRQFIKAGGILVVGFSVAGPELLKGDTAKAGVLKNTLDPTLLS |
Ga0210397_101057464 | 3300021403 | Soil | MATMSEKPASVFGPTLSRRGFIKAGGILVVGFSFAGPEFLKGDSAKPTT |
Ga0210386_108657631 | 3300021406 | Soil | MATMSEKPGNVIGPTLSRRQFIKAGGILVVGFSVAGPELLKGDSVKPTALKNTLDPTLPSSWI |
Ga0210410_101364404 | 3300021479 | Soil | MATLSEKPAHVFGPTLSRRQFVKAGGALVVGFGLVGPEFLKSDTAK |
Ga0210410_101555041 | 3300021479 | Soil | MATMSEKPASVFGPTLSRRGFIKAGGILVVGFSFAGPEFLKGDSAKPTTFKNSLDPTL |
Ga0210409_100461797 | 3300021559 | Soil | MATLSEKPSNVFGPTLSRRQFVKAGGALVVGFGLVGPEFLKSD |
Ga0242656_10396632 | 3300022525 | Soil | MATMSEKPASVFGPTLSRRGFIKAGGILVVGFSFAGPEFLKGDSAKPTTFKNSLD |
Ga0208194_10756502 | 3300025412 | Peatland | MATMSERPAVVGPTLSRRQFIKAGGILVVGFSFAGPELLKGHTAKPAVLKNSLDPTLSTS |
Ga0208850_10742291 | 3300025457 | Arctic Peat Soil | MATMSEKLGNIFGPTLSRRQFVKAGGALVVGFSLVGLKFLKG |
Ga0208715_10186084 | 3300025482 | Arctic Peat Soil | MATMSEKLGNIFGPTLSRRQFVKAGGALVVGFSLVGLKFLKGDAAKT |
Ga0207665_109879081 | 3300025939 | Corn, Switchgrass And Miscanthus Rhizosphere | MATLSERQRNIFGAKLSRRQFVKTGGVLVVGFSLVGPELLKADSQKPATLK |
Ga0207741_10311382 | 3300026941 | Tropical Forest Soil | MATMGKDAMTEKPGDGFAPTLSRRQFIKTGGILVVGFSFAGPELLKGDTSKPSTMMKN |
Ga0207783_10078053 | 3300026942 | Tropical Forest Soil | MATTSEKPVSVFGATLSRRHFVKTGGAMVVGFSLVGPDFLKRAAEQPGTMKNSLDPTLLS |
Ga0209448_101351701 | 3300027783 | Bog Forest Soil | MATMSEKPGNVFGATLTRRQFVKTGGVLVVGFSLVGSELLRGDTPKV |
Ga0209039_103186661 | 3300027825 | Bog Forest Soil | MATMRENPVNVFGATLSRRNFVKTGGALIVGVSLVGRELL |
Ga0302165_102344001 | 3300028678 | Fen | MATQSEKLTTEKTENVFGATLSRRQFIKTGGVLVVGFSFIGSGLLKADT |
Ga0265338_103948542 | 3300028800 | Rhizosphere | MATASERPAKVVGPTLSRRQFVKAGGALVVGFKFMGPSLLKA |
Ga0311340_107746372 | 3300029943 | Palsa | MATTSEKPPNVFGPTLSRRQFVKTGGALVVGFSLVGPKFLKGDA |
Ga0311365_117625061 | 3300029989 | Fen | MATMSEKPGNVFGATLTRRQFVKTGGALVVGFSLVGTEILKADTP |
Ga0302271_101694263 | 3300029998 | Bog | MATQSEKLTTEKTENVFGATLSRRQFIKTGGVLVVGFSFIGSGLLKADTTK |
Ga0311348_114081781 | 3300030019 | Fen | MATQSEKLTTEKTGNVFGATLSRRQFMKTGGVLVVGFSFVGTELLKAETAKP |
Ga0311335_112776382 | 3300030838 | Fen | MATMSEKPRNVFGATLTRRQFVKTGGALVVGLGLVGSEILE |
Ga0170834_1094768121 | 3300031057 | Forest Soil | MASKQETPVSAMGATLSRRQFVKAGGALFVAFAVVGPELLK |
Ga0170824_1030005373 | 3300031231 | Forest Soil | MATMSEKPVTTFGPTLSRRQFVKAGGALVVGFSVVGPGFLKADAAKPATLKNSLDPTLG |
Ga0265325_102534811 | 3300031241 | Rhizosphere | MATMSEKPGNVLRPTLSRRQFIKAGGILVVGFGLAGPELLKGDTAKV |
Ga0265325_104503081 | 3300031241 | Rhizosphere | MATMSEKPAHVFGPTLSRRQFVKAGGALVVGFSLMGPEIL |
Ga0265340_100559981 | 3300031247 | Rhizosphere | MATMSEKPGDVLRPTLSRRQFIKAGGILVVGFSFAGPELL |
Ga0265316_101176611 | 3300031344 | Rhizosphere | MATASERPAKVVGPTLSRRQFVKAGGALVVGFKFMGPSLLKADSAKSALMKNSLDPTL |
Ga0318538_101544401 | 3300031546 | Soil | MTTMSERPTNAFGPTLSRRQFVKTGGALVVGFKLIGPGLLRGDAAK |
Ga0310915_103855941 | 3300031573 | Soil | MATMSERPTTVLGPTLSRRQFIKAGGILVVGFSVAG |
Ga0310686_1131440503 | 3300031708 | Soil | MATMSEKPGNVLGPTLSRRQFMKAGGVLVVGFSFAGTELLKG |
Ga0307469_116194432 | 3300031720 | Hardwood Forest Soil | MATTSERPGNVLGAKLSRRQLVKTGGVLVVGFSLVGP |
Ga0318521_104496142 | 3300031770 | Soil | MATMSDRPTNAFGPTLSRRQFVRAGGALVVGFKLIGPGLLRGDAAKPALFK |
Ga0318565_103161501 | 3300031799 | Soil | MATMSEKPGNIFGATLTRRQFVKTGGVLVVGFSLVGTELLKGDTP |
Ga0306923_102611974 | 3300031910 | Soil | MATMSERPTNAFGPTLSRRQFVKAGGALVVAFKLIG |
Ga0311367_102810254 | 3300031918 | Fen | MATQSEKLTTEKTENVFGATLSRRQFIKTGGVLVVGFSFIGSGLLKADTT |
Ga0310916_100530461 | 3300031942 | Soil | MATMSERPTNAFGPTLSRRQFVKAGGALVVAFKLIGPGLLRGDAAKPALFKNSLDPTLASSWI |
Ga0310910_100302191 | 3300031946 | Soil | MATMSDRPTNAFGPTLSRRQFVRAGGALVVGFKLIGPGLLRGDAAKPALFKNS |
Ga0311373_119736511 | 3300031964 | Palsa | MATLSEKPFGPTLSRRQFVKAGGALVVGFSVVGPGILKGAPKPAAMKN |
Ga0318531_102000481 | 3300031981 | Soil | VATMSEKPGNIFGATLTRRQFVKTGGVLVVGFSLVGTELLK |
Ga0318505_102673221 | 3300032060 | Soil | MATMSERPTNAFGPTLSRRQFVKAGGALVVAFKLIGPG |
Ga0318510_102658542 | 3300032064 | Soil | VATMSEKPGNIFGATLTRRQFVKTGGVLVVGFRLVGTELLKGDT |
Ga0311301_117369872 | 3300032160 | Peatlands Soil | MATMSEKPANSFVPTLSRRQFIRAGGVLVVGFSVVGPEL |
Ga0307471_1019859321 | 3300032180 | Hardwood Forest Soil | MATMSEKPGYVFGPTLSRRQFIKAGGVLVVGFSFVGPELLKGDAAKPAAIKNSL |
Ga0335079_101516181 | 3300032783 | Soil | MATMSERPVNAFGPSLSRRQFIKAGGILVVGFSVV |
Ga0335079_109613951 | 3300032783 | Soil | MATMSEKPRNVFGPTLSRRQFIKAGGVLVVGFSVAGPELLKGDAAKPAVFKNSLDPTL |
Ga0335080_100353611 | 3300032828 | Soil | MATMSEKPTTVVGPTLSRRQFIKAGGVLVVGFSFAGPELLKGDTAKPATFMNSLDPTLGS |
Ga0335081_102742946 | 3300032892 | Soil | MATMSEKPTTVVGPTLSRRQFIKAGGVLVVGFSFAGPELLKGDTAKP |
Ga0335081_119137361 | 3300032892 | Soil | MATVSATPVNVFGAKLSRRQFVKAGGALIVGFSLVGSELLKGDAGKA |
Ga0335083_107538291 | 3300032954 | Soil | MATMSEKPRDVFGATLSRRQFMKTGGVLVVGFSVIGTGLLKADTGKSATLKNSLDPA |
Ga0335077_106205523 | 3300033158 | Soil | MATTSENPQTTIGPTLSRRQFVKAGGALVVGFKLIGPGILKVTAKPALFMNS |
Ga0370492_0357555_3_107 | 3300034282 | Untreated Peat Soil | MATLSERPQNFSGPRLSRRQFVKAGGALVVGFHLI |
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