Metagenome / Metatranscriptome Family F080362

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080362
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	64 residues
Representative Sequence	MMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA
Number of Associated Samples	85
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	42.11 %
% of genes near scaffold ends (potentially truncated)	37.39 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.957 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.565 % of family members)
Environment Ontology (ENVO)	Unclassified (26.957 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.22% β-sheet: 27.17% Coil/Unstructured: 57.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00589	Phage_integrase	2.61
PF04226	Transgly_assoc	1.74
PF01695	IstB_IS21	1.74
PF05532	CsbD	0.87
PF13561	adh_short_C2	0.87
PF12832	MFS_1_like	0.87
PF13426	PAS_9	0.87
PF00011	HSP20	0.87
PF00211	Guanylate_cyc	0.87
PF05974	DUF892	0.87
PF06568	DUF1127	0.87
PF11272	DUF3072	0.87
PF10066	DUF2304	0.87
PF08734	GYD	0.87
PF01068	DNA_ligase_A_M	0.87
PF12277	DUF3618	0.87
PF13495	Phage_int_SAM_4	0.87
PF01263	Aldose_epim	0.87
PF07885	Ion_trans_2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	1.74
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	1.74
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.87
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.87
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.87
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.87
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.87
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.87
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.87
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.87
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.87
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
All Organisms	root	All Organisms	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
cellular organisms	root	All Organisms → cellular organisms	32.17 %
Viruses	superkingdom	All Organisms → Viruses	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	32.17 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.87 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.87 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.52 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.87 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.09 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.74 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.87 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.22 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	0.87 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.87 %
unclassified Bradyrhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae	0.87 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.61 %
Mesorhizobium delmotii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium delmotii	0.87 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.87 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.87 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Bradyrhizobium sp. ARR65	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	2.61 %
Novosphingobium sp. Gsoil 351	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Gsoil 351	0.87 %
Mesorhizobium delmotii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium delmotii	0.87 %
Bradyrhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	0.87 %
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	0.87 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101992351	Not Available	691	Open in IMG/M
3300003505\|JGIcombinedJ51221_10061555	Not Available	1447	Open in IMG/M
3300004104\|Ga0058891_1374986	Not Available	618	Open in IMG/M
3300005332\|Ga0066388_101032660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1382	Open in IMG/M
3300005332\|Ga0066388_105029443	Not Available	672	Open in IMG/M
3300005340\|Ga0070689_100196897	Not Available	1643	Open in IMG/M
3300005354\|Ga0070675_100609527	Not Available	990	Open in IMG/M
3300005354\|Ga0070675_100968783	Not Available	781	Open in IMG/M
3300005364\|Ga0070673_100775039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	884	Open in IMG/M
3300005436\|Ga0070713_101113921	Not Available	763	Open in IMG/M
3300005439\|Ga0070711_100459210	Not Available	1044	Open in IMG/M
3300005439\|Ga0070711_101771327	Not Available	542	Open in IMG/M
3300005564\|Ga0070664_101597714	Not Available	618	Open in IMG/M
3300005602\|Ga0070762_10133013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1473	Open in IMG/M
3300005617\|Ga0068859_100145602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2444	Open in IMG/M
3300005764\|Ga0066903_106427491	Not Available	613	Open in IMG/M
3300005921\|Ga0070766_10934921	Not Available	594	Open in IMG/M
3300006028\|Ga0070717_10408638	Not Available	1220	Open in IMG/M
3300006041\|Ga0075023_100064995	All Organisms → cellular organisms → Bacteria → Proteobacteria	1182	Open in IMG/M
3300006052\|Ga0075029_101126138	Not Available	546	Open in IMG/M
3300006102\|Ga0075015_100530269	Not Available	682	Open in IMG/M
3300006162\|Ga0075030_101260562	Not Available	580	Open in IMG/M
3300006173\|Ga0070716_101801871	Not Available	507	Open in IMG/M
3300006174\|Ga0075014_100068925	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1573	Open in IMG/M
3300006579\|Ga0074054_11869676	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300006871\|Ga0075434_102481387	Not Available	520	Open in IMG/M
3300006903\|Ga0075426_11132281	Not Available	593	Open in IMG/M
3300006954\|Ga0079219_12193927	Not Available	531	Open in IMG/M
3300007076\|Ga0075435_100262466	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	1472	Open in IMG/M
3300007982\|Ga0102924_1013184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6678	Open in IMG/M
3300009174\|Ga0105241_10540804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1044	Open in IMG/M
3300009174\|Ga0105241_10816320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	860	Open in IMG/M
3300009522\|Ga0116218_1122760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1182	Open in IMG/M
3300009553\|Ga0105249_12594740	Not Available	579	Open in IMG/M
3300009824\|Ga0116219_10648189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	579	Open in IMG/M
3300010154\|Ga0127503_10653144	Not Available	586	Open in IMG/M
3300010154\|Ga0127503_10722239	Not Available	536	Open in IMG/M
3300010373\|Ga0134128_10654398	Not Available	1168	Open in IMG/M
3300010373\|Ga0134128_11116439	Not Available	870	Open in IMG/M
3300010373\|Ga0134128_12150914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	615	Open in IMG/M
3300010375\|Ga0105239_12859310	Not Available	563	Open in IMG/M
3300010379\|Ga0136449_102178154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium delmotii	810	Open in IMG/M
3300010379\|Ga0136449_103731117	Not Available	575	Open in IMG/M
3300010396\|Ga0134126_12428548	Not Available	570	Open in IMG/M
3300010397\|Ga0134124_12971037	Not Available	518	Open in IMG/M
3300010401\|Ga0134121_11453999	Not Available	698	Open in IMG/M
3300010401\|Ga0134121_12666584	Not Available	544	Open in IMG/M
3300011120\|Ga0150983_11216266	Not Available	790	Open in IMG/M
3300011120\|Ga0150983_12355441	Not Available	687	Open in IMG/M
3300011120\|Ga0150983_16241556	Not Available	554	Open in IMG/M
3300012089\|Ga0153924_1029905	Not Available	1073	Open in IMG/M
3300013306\|Ga0163162_12911431	Not Available	551	Open in IMG/M
3300015371\|Ga0132258_12131108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1409	Open in IMG/M
3300015372\|Ga0132256_100911992	Not Available	995	Open in IMG/M
3300015373\|Ga0132257_101366729	Not Available	901	Open in IMG/M
3300015374\|Ga0132255_103742904	Not Available	646	Open in IMG/M
3300015374\|Ga0132255_105487950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300016319\|Ga0182033_11526669	Not Available	603	Open in IMG/M
3300016422\|Ga0182039_11854009	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300016445\|Ga0182038_11134959	Not Available	695	Open in IMG/M
3300017822\|Ga0187802_10383738	Not Available	555	Open in IMG/M
3300020081\|Ga0206354_10525112	Not Available	500	Open in IMG/M
3300020579\|Ga0210407_10029552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4070	Open in IMG/M
3300020579\|Ga0210407_10032540	Not Available	3881	Open in IMG/M
3300020579\|Ga0210407_10092454	Not Available	2291	Open in IMG/M
3300020579\|Ga0210407_10457133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	998	Open in IMG/M
3300020579\|Ga0210407_10568612	Not Available	884	Open in IMG/M
3300020579\|Ga0210407_11394763	Not Available	520	Open in IMG/M
3300020579\|Ga0210407_11422569	Not Available	514	Open in IMG/M
3300020581\|Ga0210399_10280598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1390	Open in IMG/M
3300020581\|Ga0210399_10706613	Not Available	828	Open in IMG/M
3300020581\|Ga0210399_10915314	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300020581\|Ga0210399_11119935	Not Available	629	Open in IMG/M
3300020581\|Ga0210399_11290425	Not Available	575	Open in IMG/M
3300020582\|Ga0210395_10811285	Not Available	697	Open in IMG/M
3300020583\|Ga0210401_10181492	Not Available	1960	Open in IMG/M
3300021168\|Ga0210406_10133175	All Organisms → cellular organisms → Bacteria	2093	Open in IMG/M
3300021180\|Ga0210396_10976374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp. Gsoil 351	719	Open in IMG/M
3300021180\|Ga0210396_10977596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → unclassified Bradyrhizobiaceae → Bradyrhizobiaceae bacterium	718	Open in IMG/M
3300021181\|Ga0210388_10343870	Not Available	1312	Open in IMG/M
3300021401\|Ga0210393_10426997	Not Available	1081	Open in IMG/M
3300021401\|Ga0210393_11260672	Not Available	594	Open in IMG/M
3300021404\|Ga0210389_10504475	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300021405\|Ga0210387_10297314	All Organisms → cellular organisms → Bacteria	1420	Open in IMG/M
3300021405\|Ga0210387_11830074	Not Available	511	Open in IMG/M
3300021420\|Ga0210394_10319712	Not Available	1362	Open in IMG/M
3300021432\|Ga0210384_10620113	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300021478\|Ga0210402_10048804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3697	Open in IMG/M
3300021478\|Ga0210402_10388185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1296	Open in IMG/M
3300021478\|Ga0210402_10933614	Not Available	794	Open in IMG/M
3300021559\|Ga0210409_10809179	Not Available	810	Open in IMG/M
3300021559\|Ga0210409_11243790	Not Available	620	Open in IMG/M
3300022557\|Ga0212123_10075620	All Organisms → cellular organisms → Bacteria → Proteobacteria	2874	Open in IMG/M
3300022724\|Ga0242665_10368989	Not Available	518	Open in IMG/M
3300024227\|Ga0228598_1003457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3399	Open in IMG/M
3300024271\|Ga0224564_1117442	Not Available	544	Open in IMG/M
3300025931\|Ga0207644_10716552	Not Available	835	Open in IMG/M
3300025933\|Ga0207706_11573416	Not Available	533	Open in IMG/M
3300025960\|Ga0207651_11552275	Not Available	596	Open in IMG/M
3300027884\|Ga0209275_10303538	Not Available	886	Open in IMG/M
3300027911\|Ga0209698_10197718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1628	Open in IMG/M
3300027911\|Ga0209698_11023491	Not Available	615	Open in IMG/M
3300030494\|Ga0310037_10262587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ARR65	745	Open in IMG/M
3300030707\|Ga0310038_10346630	Not Available	658	Open in IMG/M
3300031231\|Ga0170824_101412989	Not Available	569	Open in IMG/M
3300031708\|Ga0310686_103904369	Not Available	1244	Open in IMG/M
3300031708\|Ga0310686_115350046	Not Available	561	Open in IMG/M
3300031716\|Ga0310813_12359159	Not Available	505	Open in IMG/M
3300031781\|Ga0318547_10396427	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300031947\|Ga0310909_10550171	Not Available	966	Open in IMG/M
3300031954\|Ga0306926_11288381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	854	Open in IMG/M
3300032068\|Ga0318553_10444433	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300032180\|Ga0307471_104019172	Not Available	520	Open in IMG/M
3300032515\|Ga0348332_14062076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1594	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.13%
Host-Associated	Host-Associated	20.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.70%
Plants	Host-Associated → Plants	20.00%
Aquatic	Environmental → Aquatic	10.43%
Fungi	Host-Associated → Fungi	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.78%
Sediment	Environmental → Aquatic → Sediment	6.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.22%
Freshwater	Environmental → Aquatic → Freshwater	2.61%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.74%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.87%
Mycelium	Host-Associated → Fungi → Mycelium	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.04%
Loam	Environmental → Terrestrial → Soil → Loam	14.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.48%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.48%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.74%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.57%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.09%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.09%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.22%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.48%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.61%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.74%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.87%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1019923512	3300000364	Soil	MMIQMPVITAIKPEERSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV*
JGIcombinedJ51221_100615552	3300003505	Forest Soil	MMIQMPVTTAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV*
Ga0058891_13749862	3300004104	Forest Soil	MLPVITSIKPELRSKGLDRRQCCWHVSYQFCDLSAEITVYAESEADARAKAVDQLRLRGLKVA*
Ga0066388_1010326601	3300005332	Tropical Forest Soil	TSIKPELRSKQLHNLRCWHVGYRFCDLCAEVTVYAEDEAEARAKAVDQLRRRGLKLASAA
Ga0066388_1050294432	3300005332	Tropical Forest Soil	MIPMIDGVRPELRSKGLDRLQCCWHVRYQFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA*
Ga0070689_1001968971	3300005340	Switchgrass Rhizosphere	PELRSKGLDRLRCGWHVRYEFCGLSAEIAVTAENEAEARVKAGDQLRRRGLKLAV*
Ga0070675_1006095272	3300005354	Miscanthus Rhizosphere	MSPVIISVRPESRSRGVDRLRCCWHVLYQFCDLPAEITVYAEDEVAARAKAIDQLRQRGLKVA*
Ga0070675_1009687833	3300005354	Miscanthus Rhizosphere	MPPVIIAVKPELRSKGLDRLRCGYEFCGLSAEIAVTAENEAEARVKAGDQLRRRGRKLAV
Ga0070673_1007750391	3300005364	Switchgrass Rhizosphere	PLRDVIPKMPFIVGIRPEKRSKGLDRLQCCWHVLYQFCGLSAEIIVHAQSEAEARVNAVDELRARGLKVVLLENSRHPC*
Ga0070713_1011139211	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPAIEGVRPETHSKGLDRLRCSWHVGYRFCGLTAQITVHAENEAAARAKAVDQLRRR
Ga0070711_1004592103	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPPVIIAVKPELRSKGLDRLRCGWHVRYEFCGLSAEIAVTAENEAEARVKAGDQLRRRGLKLAV*
Ga0070711_1017713271	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KRKRIGISGRGAGSTAIVPRYAPMMPVITEVTSEKRSSRGLDHLQCCWHVRYEFCGLSAQIAVYAENEAEARAKAVEQLRLRGLKVA*
Ga0070664_1015977141	3300005564	Corn Rhizosphere	EIKPGLRSKDLDRLQCSWRVGYQFCGLWAEVTVSAKDQTDARAKAVDQLHLRGLKVA*
Ga0070762_101330131	3300005602	Soil	TAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV*
Ga0068859_1001456024	3300005617	Switchgrass Rhizosphere	MTPVITTVKPELRSKYSTDLHRWHVEYRFCELSAEITVHADNETAARAKPVDQLRLRGLKVT*
Ga0066903_1064274911	3300005764	Tropical Forest Soil	MLPVIIGGRPEPRGKGVDRLQRCWHVRYQFCGLSAEVTVYAENEAEALGKAVDQLRGRGLKVA*
Ga0070766_109349211	3300005921	Soil	MMIQMPVITAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAV
Ga0070717_104086382	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MMPVITEVKPGLQSEGLDGLRCCWHVRYQFCGLSPEITVYAENEAAARAKAVDQLRKRGLKVA*
Ga0075023_1000649951	3300006041	Watersheds	VTAVITAVRLERRSKGVNDLRCWHVHYRFCGVSAEITVYANDEKEARAKAVDQLRRRGLKVA*
Ga0075029_1011261382	3300006052	Watersheds	TKRQHVTAVITAVRLERRSKGVNDLRCWHVNYRFCGVSAETTVYAHDKAEARAMALNQLRRRGLKVARSLK*
Ga0075015_1005302692	3300006102	Watersheds	MMAVITGVRLERRSKGANDLRCWHVNYRFCGVSAETTVYAHDKAEARAMALNQLRRRGLKVARSLK*
Ga0075030_1012605622	3300006162	Watersheds	MVMPIIKSIRPELRSKGLDRLRCCWHVGYQFCGLLAEITVYAENEAEARRKAVDQLRLRGLKVAEPRVASPRG*
Ga0070716_1018018711	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MMIQMPVITAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRLRGLKVA*
Ga0075014_1000689253	3300006174	Watersheds	MMAVITAVRLERRSKGVNDLRCWHVNYRFCGVSAETTVYAHDKAEARAMALNQLRRRGLKVARSLK*
Ga0074054_118696762	3300006579	Soil	MTAVITAVRLERRSKGLNDLRCWHVHYRFCGVSAEITVYANHEKEARAKAVDQLRRRGLKVA*
Ga0075434_1024813872	3300006871	Populus Rhizosphere	MQPPIILGVRPELRSKGLDRLRCCWHVRYEFCGLSAEIAVTAENEGEARAKAVDQLRRRGLKVAAPAA*
Ga0075426_111322812	3300006903	Populus Rhizosphere	MQSPTILGVRPELRSKGLDRLRCCWHVRYEFCGLSAEIAVTAENEAEARARAADQLRRRGLKLTA*
Ga0079219_121939271	3300006954	Agricultural Soil	MQPPIILGVRPELRSKGLDRLRCCWHVRYEFCGLSAEIVVTAANETEARAKAVDQLRRRGLKLAA*
Ga0075435_1002624662	3300007076	Populus Rhizosphere	MQPPIILLRSKGLDRLRCCWHVRYEFCGLSAEIAVTAENEAEARARAADQPRRRGLKLTA
Ga0102924_10131846	3300007982	Iron-Sulfur Acid Spring	MPVITALRPEERSKALHDLRCWHVGYKFCGLTAEVTVYAKDEAEARAKAVDQLRARGLRVPELSA*
Ga0105241_105408041	3300009174	Corn Rhizosphere	MMAAIDRVRPETHSKGLDRLRCIWHVGYRFCGLTAQITVHAENEAAARAKAVDQLRRRGLKVAAPAA*
Ga0105241_108163203	3300009174	Corn Rhizosphere	GSGPRIARYVFMMPVITEIKPGLRSKGLDRLQCSWRVGYQFCGLWAEVTVSAEDQTDARAKAVDQLHLRGLKVA*
Ga0116218_11227602	3300009522	Peatlands Soil	MMIQMPVITAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV*
Ga0105249_125947401	3300009553	Switchgrass Rhizosphere	MPPVIIAVKPELRSKGLDRLRCGWHVRYEFCGLSAEIAVTAENEAEARVKAGDQLRRRVLKLAV*
Ga0116219_106481891	3300009824	Peatlands Soil	MMIQMPVITAIKPEERSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRLRGLKVA*
Ga0127503_106531442	3300010154	Soil	MMPPVITSIAPELRSRGLDRRQCCWHASYQFCGLSAEITVYAENEAEARTKAVSQLRQRGLKVA*
Ga0127503_107222393	3300010154	Soil	ACMMPPVITSIKSELRSKGLDRRQCCWHVSYQFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA*
Ga0134128_106543982	3300010373	Terrestrial Soil	MMPVITEIKPGLRSKDLDRLQCSWRVGYQFCGLWAEVTVSAKDQTDARAKAVDQLRLRGLKVA*
Ga0134128_111164392	3300010373	Terrestrial Soil	MPAIDAVRPETHSKGLDRLRCIWHVGYRFCGLTAQITVHAENEAAARAKAVDQLRRRGLKVAAPAA*
Ga0134128_121509141	3300010373	Terrestrial Soil	RMMPIIDDIRPGSRSEGTLQCCWQVRYRFCGLLAVITVYAHNEADARANAVEQLRLRGLKIA*
Ga0105239_128593101	3300010375	Corn Rhizosphere	MPFIVGIRPEKRSKGLDRLQCCWHVLYQFCGLSAEIIVHAQSEAEARVNAVDEL
Ga0136449_1021781542	3300010379	Peatlands Soil	MMIQMPVITAIKPEERSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVH
Ga0136449_1037311172	3300010379	Peatlands Soil	MMIQMPVITAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVH
Ga0134126_124285481	3300010396	Terrestrial Soil	MIPVIHDIRPGLRPKGALQIRCWHVTYQFCGVSAEITVSAENADEARAKAVKQLRRRGLKVA*
Ga0134124_129710372	3300010397	Terrestrial Soil	VIPLHALIPKLPVIAGIRPEKRSRGLDRLQCCWHVLYEFCGLSAEIIVHAQNEAEAREKAVDQLRDRGLKVVPLN
Ga0134121_114539991	3300010401	Terrestrial Soil	MPPVIIAVKPELRSKGLDRLRCGWHVRYEFCGLSAEIAVTAENEAEARTKAVNQLRRRGLKLAA*
Ga0134121_126665842	3300010401	Terrestrial Soil	MTPVITTVKPELRSKYSTDLHRWHVEYRFCELSAEITVHADNETAARAKPVDQLRL
Ga0150983_112162662	3300011120	Forest Soil	MMLPVITSIKPELRSKGLDRRQCCWHVSYQFCDLSAEITVYAESEADARAKAVDQLRLRGLKVA*
Ga0150983_123554412	3300011120	Forest Soil	MMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEIPVYAENEAETRAKAVDQLRLRGLKVVA*
Ga0150983_162415562	3300011120	Forest Soil	MMRPVITSIKAELRSKGLDRRQCCWHVSYQFCGLSAEITVYVENEAEARAKAVDQLRLRGLKVA
Ga0153924_10299051	3300012089	Attine Ant Fungus Gardens	MMPAIDSVRPEVRSEGLDHLRCSWHVGYQFCGMSAEITVHAENEADARAKAVDQLRMRGLRIA*
Ga0157371_114282133	3300013102	Corn Rhizosphere	KGLDRLRCGWHVRYEFCGLSAEIAVTAENEAEARVKAGDQLRRRGLKLAV*
Ga0163162_129114312	3300013306	Switchgrass Rhizosphere	MLPVITEVTSEKRSSKGLDHLQCCWHVRYEFCGLSAQIAVYAENEAEARAKAVEQLRLRGLKVA*
Ga0132258_121311082	3300015371	Arabidopsis Rhizosphere	MMPVITEIKPGLRSKDLDRLQYSWRVGFCGLWAEVTVSAKDQTDARAKAVDQLRLRGLKVA*
Ga0132256_1009119921	3300015372	Arabidopsis Rhizosphere	MPPVIIAVKPELRSKGLDRLRCGWHVRYEFCGLSVQIAVYAENEAEARAKAVEQLRLRGLKVA*
Ga0132257_1013667292	3300015373	Arabidopsis Rhizosphere	MPPVIIAVKPELRSKGLDRLRCGWHVRYEFCGLSAEIAVTAENEAEARVKAGDQPRRRGLKLAV*
Ga0132255_1037429041	3300015374	Arabidopsis Rhizosphere	MMPVITEVTSEKRSSKGLGHPQCCWHVRYEFCGLSAQIAVYAENEAEARAKAVEQLRLRGLKVA*
Ga0132255_1054879501	3300015374	Arabidopsis Rhizosphere	VRPELRSKGLDRLRCGWHVRYEFCGLSEIAVTAENEAEARVKADDQLRRRGLKLAV*
Ga0182033_115266692	3300016319	Soil	MTPVITGTRPELRSKSADHCWHVSYQFCGLSAEITVYAENEVEARAMAVDQ
Ga0182039_118540092	3300016422	Soil	VIIGGRPEPRGKGVDRLQRCWHVRYQFCGLSAEVTVYAENEAEALGKAVGQLRGRGLKVDANMVRSP
Ga0182038_111349591	3300016445	Soil	RSELRGKRADRLQRCWHVRYQLCGLSAEIIVYAETEAEARAKAADELRLRGLKVA
Ga0187802_103837381	3300017822	Freshwater Sediment	MMIQMPVITAIKPEERSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRLRGLKVA
Ga0206354_105251121	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MTPVITTVKPELRSKYSTDLHRWHVEYRFCELSAEITVHADNETAARAKPVDQLRLRGLKVT
Ga0210407_100295525	3300020579	Soil	MMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENEAEARAKAVGQLRQRGLKVA
Ga0210407_100325405	3300020579	Soil	MMIQMPVTTAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV
Ga0210407_100924544	3300020579	Soil	MMPPVITSIKSELRSKGLDRRQCCWHVSHQFCDLSAEITVYAENEADARAQAVRQLRRRGLKVE
Ga0210407_104571332	3300020579	Soil	MVPVIEDIRPELRSNGLDRRQCCWHVRYRFCDLSAEIAVYAKNEAEARAQAVGQLRRRGLKVE
Ga0210407_105686121	3300020579	Soil	MMRPVITSIKAELRSKGLDRRQCCWHVSYQFSGLSAENTVYAENEAEARAKAVDQLRLRGLKVA
Ga0210407_113947632	3300020579	Soil	KSIRPELRSKGLDRLRCCWHVGYQFCGLLAEITVYAENEAEARRKAVDQLRLRGLKVAEPRVASPRG
Ga0210407_114225692	3300020579	Soil	MMPPVITSVKPELRSKGLARRQCCWHVSYRFCGLSAEITVYAANEAEARAKAVDQLRLRGLKVA
Ga0210399_102805981	3300020581	Soil	MMRPVITSIKAELRSKGLDRRQCCWHVSYQFSGLSAENTVYAENEAEARAKAVDQLRL
Ga0210399_107066132	3300020581	Soil	MPVITALRPEERCKALHDLRCWHVGYKFCGLTAEVTVYAKDEAEARAKAVDQLRARGLRVPELSA
Ga0210399_109153141	3300020581	Soil	KERQIACMMRPVITSIKAELRSKGLDRRQCCWHVSYQFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA
Ga0210399_111199351	3300020581	Soil	MMPPVITSVRPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAANEAEARAKAVDQLRLRGLKVA
Ga0210399_112904251	3300020581	Soil	KPELRSKGLDRRQCCWHVSYQFCDLSAEITVYAESEADARAKAVDQLRLRGLKVA
Ga0210395_108112852	3300020582	Soil	MMIQMPVTTAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQL
Ga0210401_101814921	3300020583	Soil	MPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENEAEARAKAVGQLRQRGLKVA
Ga0210406_101331755	3300021168	Soil	MMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEIPVYAENEAETRAKAVDQLRLRGLKVVA
Ga0210396_109763741	3300021180	Soil	SGKERQIACMMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEIPVYAENEAETRAKAVDQLRLRGLKVVA
Ga0210396_109775962	3300021180	Soil	GSGSHQSSIEQSESAMLMPVIDGIRPVLGSRELDRLRCCWHVGYQFCGLSAEITVSAENEAEARTKAVHQLRLRGLKIA
Ga0210388_103438703	3300021181	Soil	MMLPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENKAEARAKAVGQLRQRGLKVA
Ga0210393_104269971	3300021401	Soil	VITALRPEERSKALHDLRCWHVGYKFCGLTAEVAVYARDEAEARAKAVDQLRTRGLRVPELSA
Ga0210393_112606722	3300021401	Soil	PVITSIKPELRSKGLDRRRCCWHVSCQFCDLSAEITVYAESEADARAKAVDQLRLRGLKV
Ga0210389_105044752	3300021404	Soil	MMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA
Ga0210387_102973143	3300021405	Soil	MMRPVITSIKAELRSKGLDRRQCCWHVSYQFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA
Ga0210387_118300742	3300021405	Soil	MIQMPVTTAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV
Ga0210394_103197121	3300021420	Soil	MMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENEAEARAKAVGQLRQRGLQVA
Ga0210384_106201132	3300021432	Soil	MMRPVITSIKTELRSKGLDRRQCCWHVSYQFCGLSAEITVYAENEAEARAKAVDQLRLRGLKVA
Ga0210402_100488043	3300021478	Soil	MLPVITSIKPELRSKGLDRRQCCWHVSYQFCDLSAEITVYAESEADARAKAVDQLRLRGLKVA
Ga0210402_103881853	3300021478	Soil	MMPPLITSIKPDLRSKGLDRRQCCWHVGYQFCDLSAEIIVYAENEADARAKAVDQLRLRGLKVA
Ga0210402_109336142	3300021478	Soil	LWIRRKPGSSNRFVGKERQIACMMPPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEIPVYAENEAETRAKAVDQLRLRGLKVVA
Ga0210409_108091791	3300021559	Soil	LRSKGLDRRRCCWHVSYQFCDLSAEITVYAESEADARAKAVDQLRLRGLKVA
Ga0210409_112437902	3300021559	Soil	MMLPVITSIKPELRSKGLDRRQCCWHVSYQFCDLSAEITVYAESEADARAKAVAQLRLRGLKVA
Ga0212123_100756207	3300022557	Iron-Sulfur Acid Spring	MPVITALRPEERSKALHDLRCWHVGYKFCGLTAEVTVYAKDEAEARAKAVDQLRARGLRVPELSA
Ga0242665_103689891	3300022724	Soil	ESSSRFVGKRATDSCACMMLPVITSIKPELRSKGLDRRQCCWHVSYRFCGLSAEITVYAENEAEARAKAVGQLRQRGLKVA
Ga0228598_10034572	3300024227	Rhizosphere	MTAMIAAVRLERRSKGLNDLRCWHVHYRFCGVSAETTVYAHDKTGARAKALDQLRRRGLKISRRPGPRLQ
Ga0224564_11174421	3300024271	Soil	VGKRATDSYACMMPPLITSIKPDLRSKGLDRRQCCWHVGYQFCDLSAEIIVYAENEADARAKAVDQLRLRGLKVA
Ga0207644_107165522	3300025931	Switchgrass Rhizosphere	MPPVIIAVKPELRSKGLDRLRCGYEFCGLSAEIAVTAENEAEARVKAGDQLRRRGLKLAV
Ga0207706_115734162	3300025933	Corn Rhizosphere	GSTAIMPRYAPMLPVITEVTSEKRSSKGLDHLQCCWHVRYEFCGLSAQIAVYAENEAEARAKAVEQLRLRGLKVA
Ga0207651_115522751	3300025960	Switchgrass Rhizosphere	MSPIIIGVKPELRSKGLDRLQCGWHVRYEFCGLSAEIVVTAENEAEARAKAVDQLRRRGLKLAA
Ga0209275_103035382	3300027884	Soil	MMIQMPVITAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV
Ga0209698_101977182	3300027911	Watersheds	MMIQMPVITAIMPKRRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV
Ga0209698_110234911	3300027911	Watersheds	MVMPIIKSIRPELRSKGLDRLRCCWHVGYQFCGLLAEITVYAENEAEARAKAVDQLRLRGLKVA
Ga0310037_102625872	3300030494	Peatlands Soil	MMIQMPVITAIKPERRSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRLRGLKVA
Ga0310038_103466302	3300030707	Peatlands Soil	MMIQMPVITAIKPEERSKGLDDLRCWHVAYRFCGLTAEIIVYAQDDAEARAKAVHQLRVRGLKV
Ga0170824_1014129891	3300031231	Forest Soil	MPVITALRPEERSKARHDLRSWHVEYKFCGLTAEVTVYAKDEAEARAKAVDQLRARGLRVPELSA
Ga0310686_1039043691	3300031708	Soil	MPVITALRPEERSKARHDLRCWHVEYKFCGLTAEVTVYAKDEAEARAKAVDQLRARGLRVPELSA
Ga0310686_1153500462	3300031708	Soil	MPVITALRPEERCKALHDLRCWHVGYKFCGLTAEVTVYAKDEAEARAKAVDQLRAR
Ga0310813_123591592	3300031716	Soil	MPLIVGIRPEKRSKGLDRSQCCWHVSYQFCGLSADIIVRARDEAEAHTKAADQLRDRGL
Ga0318547_103964272	3300031781	Soil	MTPVITGTRPELRSKSADHCWHVSYQFCGLSAEITVYAENEAEARAKGVDQLRLRGLKVT
Ga0310909_105501712	3300031947	Soil	MSPVIVGVRLETRSRGLDRLKCCWHVLYRVCGLTAEVTVYAANEADARAKAADQLRRRGLKLAA
Ga0306926_112883813	3300031954	Soil	MPVIIAVRPQLRAEADRPQRFCWHVSYQFCNLPAEITVRAENADEARAKAVEQLRLRGLKVA
Ga0318553_104444332	3300032068	Soil	MTPVITGTRPELRSKSADHCWHVSYQFCGLSAEITVYAENEAEARAKGVD
Ga0307471_1040191721	3300032180	Hardwood Forest Soil	SRFVGKRATDSFTCMMPPVITSIKSELRSKGLDRRQCCWHVSHQFCDLSAEITVYAENEADARAQAVRQLRRRGLKVE
Ga0348332_140620761	3300032515	Plant Litter	MMPPVITSVKPEQRSKGSDRQQCCWHVSYQFCDLSAEITVYAENEADARAKAIDQLRLRGLKVT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080362

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences