NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F080379

Metagenome / Metatranscriptome Family F080379

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F080379
Family Type Metagenome / Metatranscriptome
Number of Sequences 115
Average Sequence Length 45 residues
Representative Sequence LSLVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQ
Number of Associated Samples 76
Number of Associated Scaffolds 115

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 46.96 %
% of genes near scaffold ends (potentially truncated) 68.70 %
% of genes from short scaffolds (< 2000 bps) 96.52 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (79.130 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil
(12.174 % of family members)
Environment Ontology (ENVO) Unclassified
(26.957 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(62.609 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 115 Family Scaffolds
PF02371Transposase_20 13.91
PF13358DDE_3 7.83
PF12762DDE_Tnp_IS1595 2.61
PF05598DUF772 1.74
PF01609DDE_Tnp_1 1.74
PF13546DDE_5 1.74
PF07589PEP-CTERM 1.74
PF11154DUF2934 0.87
PF14559TPR_19 0.87
PF00296Bac_luciferase 0.87
PF13384HTH_23 0.87
PF01526DDE_Tnp_Tn3 0.87
PF02518HATPase_c 0.87
PF13340DUF4096 0.87
PF02308MgtC 0.87
PF16694Cytochrome_P460 0.87
PF01507PAPS_reduct 0.87
PF01527HTH_Tnp_1 0.87
PF13419HAD_2 0.87
PF01964ThiC_Rad_SAM 0.87
PF00106adh_short 0.87
PF00023Ank 0.87
PF07542ATP12 0.87
PF07859Abhydrolase_3 0.87
PF00903Glyoxalase 0.87
PF13545HTH_Crp_2 0.87
PF13586DDE_Tnp_1_2 0.87
PF00027cNMP_binding 0.87
PF13565HTH_32 0.87
PF00665rve 0.87

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 115 Family Scaffolds
COG3547TransposaseMobilome: prophages, transposons [X] 13.91
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 1.74
COG3293TransposaseMobilome: prophages, transposons [X] 1.74
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 1.74
COG5421TransposaseMobilome: prophages, transposons [X] 1.74
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 1.74
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 1.74
COG04224-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiCCoenzyme transport and metabolism [H] 0.87
COG0657Acetyl esterase/lipaseLipid transport and metabolism [I] 0.87
COG1285Magnesium uptake protein YhiD/SapB, involved in acid resistanceInorganic ion transport and metabolism [P] 0.87
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.87
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.87
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.87
COG3174Membrane component of predicted Mg2+ transport system, contains DUF4010 domainInorganic ion transport and metabolism [P] 0.87
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.87
COG4584TransposaseMobilome: prophages, transposons [X] 0.87
COG4644Transposase and inactivated derivatives, TnpA familyMobilome: prophages, transposons [X] 0.87
COG5387Mitochondrial FoF1-type ATP synthase assembly chaperone ATP12Posttranslational modification, protein turnover, chaperones [O] 0.87

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms79.13 %
UnclassifiedrootN/A20.87 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459019|G14TP7Y01CXJWSAll Organisms → cellular organisms → Bacteria → Proteobacteria639Open in IMG/M
3300001686|C688J18823_10357991All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300002568|C688J35102_117977592All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria520Open in IMG/M
3300002568|C688J35102_118958962Not Available618Open in IMG/M
3300002568|C688J35102_120066245All Organisms → cellular organisms → Bacteria → Proteobacteria866Open in IMG/M
3300004081|Ga0063454_100727767Not Available753Open in IMG/M
3300004081|Ga0063454_101383586All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300004463|Ga0063356_106291689All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103509Open in IMG/M
3300005178|Ga0066688_10923105All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300005328|Ga0070676_10357951All Organisms → cellular organisms → Bacteria → Proteobacteria1005Open in IMG/M
3300005334|Ga0068869_100194526All Organisms → cellular organisms → Bacteria1596Open in IMG/M
3300005354|Ga0070675_101946952All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium542Open in IMG/M
3300005439|Ga0070711_101205492All Organisms → cellular organisms → Bacteria → Proteobacteria655Open in IMG/M
3300005441|Ga0070700_100945742All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300005456|Ga0070678_100061138All Organisms → cellular organisms → Bacteria → Proteobacteria2775Open in IMG/M
3300005466|Ga0070685_10648714All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium765Open in IMG/M
3300005535|Ga0070684_101934957Not Available556Open in IMG/M
3300005578|Ga0068854_101426368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria627Open in IMG/M
3300005718|Ga0068866_10763546Not Available669Open in IMG/M
3300005843|Ga0068860_101997765Not Available601Open in IMG/M
3300006173|Ga0070716_101168985All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300006237|Ga0097621_100075316All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2797Open in IMG/M
3300006854|Ga0075425_102058768All Organisms → cellular organisms → Bacteria → Proteobacteria638Open in IMG/M
3300006954|Ga0079219_11529712All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium606Open in IMG/M
3300006954|Ga0079219_11707608Not Available584Open in IMG/M
3300006969|Ga0075419_10403980All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300007004|Ga0079218_10626051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria989Open in IMG/M
3300009100|Ga0075418_11562999All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300009101|Ga0105247_10161624Not Available1483Open in IMG/M
3300009156|Ga0111538_14078877All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria504Open in IMG/M
3300009177|Ga0105248_11064079All Organisms → cellular organisms → Bacteria → Proteobacteria914Open in IMG/M
3300009545|Ga0105237_11720124Not Available634Open in IMG/M
3300009789|Ga0126307_11178032All Organisms → cellular organisms → Bacteria → Proteobacteria620Open in IMG/M
3300010036|Ga0126305_10654128All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria709Open in IMG/M
3300010039|Ga0126309_10497286All Organisms → cellular organisms → Bacteria → Proteobacteria750Open in IMG/M
3300010039|Ga0126309_10603632All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium691Open in IMG/M
3300010040|Ga0126308_10219175All Organisms → cellular organisms → Bacteria1228Open in IMG/M
3300010040|Ga0126308_10344924All Organisms → cellular organisms → Bacteria986Open in IMG/M
3300010041|Ga0126312_10561598All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300010044|Ga0126310_10513740Not Available878Open in IMG/M
3300010044|Ga0126310_11714753All Organisms → cellular organisms → Bacteria → Proteobacteria522Open in IMG/M
3300010045|Ga0126311_10701426All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300010045|Ga0126311_10757218All Organisms → cellular organisms → Bacteria → Proteobacteria780Open in IMG/M
3300010045|Ga0126311_11011597All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria680Open in IMG/M
3300010045|Ga0126311_11537326Not Available558Open in IMG/M
3300010045|Ga0126311_11816106Not Available517Open in IMG/M
3300010373|Ga0134128_11052406All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103899Open in IMG/M
3300010375|Ga0105239_10653769All Organisms → cellular organisms → Bacteria1201Open in IMG/M
3300010375|Ga0105239_11000473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103961Open in IMG/M
3300010400|Ga0134122_11911270Not Available629Open in IMG/M
3300011119|Ga0105246_11368722All Organisms → cellular organisms → Bacteria → Proteobacteria659Open in IMG/M
3300012212|Ga0150985_100746944Not Available505Open in IMG/M
3300012212|Ga0150985_101792781All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales869Open in IMG/M
3300012212|Ga0150985_102125996All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
3300012212|Ga0150985_102419501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans1239Open in IMG/M
3300012212|Ga0150985_107745455All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1001Open in IMG/M
3300012212|Ga0150985_112443224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD00881651Open in IMG/M
3300012212|Ga0150985_113346224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria514Open in IMG/M
3300012212|Ga0150985_114222439All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria619Open in IMG/M
3300012212|Ga0150985_115145786Not Available584Open in IMG/M
3300012212|Ga0150985_115747336Not Available697Open in IMG/M
3300012212|Ga0150985_118800358All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300012212|Ga0150985_121963292Not Available501Open in IMG/M
3300012469|Ga0150984_100573090All Organisms → cellular organisms → Bacteria → Proteobacteria859Open in IMG/M
3300012469|Ga0150984_105643318All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium971Open in IMG/M
3300012469|Ga0150984_108408406All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium893Open in IMG/M
3300012469|Ga0150984_113238072Not Available603Open in IMG/M
3300012469|Ga0150984_113684355All Organisms → cellular organisms → Bacteria → Proteobacteria632Open in IMG/M
3300012469|Ga0150984_113786094All Organisms → cellular organisms → Bacteria1292Open in IMG/M
3300012469|Ga0150984_117120528All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1380Open in IMG/M
3300012469|Ga0150984_117558483Not Available1048Open in IMG/M
3300012469|Ga0150984_118966691All Organisms → cellular organisms → Bacteria → Proteobacteria606Open in IMG/M
3300012469|Ga0150984_119338997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria693Open in IMG/M
3300012469|Ga0150984_120380997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1163Open in IMG/M
3300012469|Ga0150984_122008896All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria543Open in IMG/M
3300012469|Ga0150984_123356995All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria613Open in IMG/M
3300012955|Ga0164298_10538887All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales789Open in IMG/M
3300012957|Ga0164303_10943591All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium608Open in IMG/M
3300012957|Ga0164303_11062666All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria581Open in IMG/M
3300013297|Ga0157378_11955389All Organisms → cellular organisms → Bacteria → Proteobacteria636Open in IMG/M
3300013297|Ga0157378_13139588All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
3300013306|Ga0163162_11425478All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300013306|Ga0163162_12650150Not Available577Open in IMG/M
3300014325|Ga0163163_11071929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria869Open in IMG/M
3300014326|Ga0157380_10872993All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300014487|Ga0182000_10493067All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium568Open in IMG/M
3300014745|Ga0157377_11563449Not Available527Open in IMG/M
3300015371|Ga0132258_13967434All Organisms → cellular organisms → Bacteria → Proteobacteria1005Open in IMG/M
3300015374|Ga0132255_105326863All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium544Open in IMG/M
3300017792|Ga0163161_10074889All Organisms → cellular organisms → Bacteria2483Open in IMG/M
3300018422|Ga0190265_11609443All Organisms → cellular organisms → Bacteria761Open in IMG/M
3300018433|Ga0066667_11943748All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria538Open in IMG/M
3300018466|Ga0190268_11346785All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales606Open in IMG/M
3300019362|Ga0173479_10416861All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium653Open in IMG/M
3300025903|Ga0207680_10480211All Organisms → cellular organisms → Bacteria884Open in IMG/M
3300025907|Ga0207645_11088684Not Available539Open in IMG/M
3300025921|Ga0207652_11448234All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium590Open in IMG/M
3300025927|Ga0207687_10084017All Organisms → cellular organisms → Bacteria → Proteobacteria2307Open in IMG/M
3300025945|Ga0207679_12020208Not Available525Open in IMG/M
3300025986|Ga0207658_11170000All Organisms → cellular organisms → Bacteria703Open in IMG/M
3300026075|Ga0207708_10519247Not Available1001Open in IMG/M
3300026075|Ga0207708_11388225All Organisms → cellular organisms → Bacteria → Proteobacteria616Open in IMG/M
3300026095|Ga0207676_10329550All Organisms → cellular organisms → Bacteria1404Open in IMG/M
3300026121|Ga0207683_11091715All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300027775|Ga0209177_10022393All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum1576Open in IMG/M
3300027903|Ga0209488_11147074All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria527Open in IMG/M
3300028104|Ga0247713_1090376All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria654Open in IMG/M
3300030514|Ga0268253_10012766All Organisms → cellular organisms → Bacteria → Proteobacteria1921Open in IMG/M
3300030988|Ga0308183_1087291All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria691Open in IMG/M
3300031058|Ga0308189_10056034All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1114Open in IMG/M
3300031562|Ga0310886_10577350All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales688Open in IMG/M
3300031939|Ga0308174_11776600Not Available530Open in IMG/M
3300032074|Ga0308173_12209014All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium519Open in IMG/M
3300034132|Ga0334915_049018All Organisms → cellular organisms → Bacteria851Open in IMG/M
3300034137|Ga0334943_053241All Organisms → cellular organisms → Bacteria769Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil12.17%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere11.30%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere10.43%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.83%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil5.22%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.35%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil3.48%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.61%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.74%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.74%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.87%
BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust0.87%
Hypolithic BiocrustEnvironmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust0.87%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.87%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.87%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.87%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.87%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.87%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459019Litter degradation MG4EngineeredOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028104Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-E_NEnvironmentalOpen in IMG/M
3300030514Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300030988Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300034132Biocrust microbial communities from Mojave Desert, California, United States - 11HMCEnvironmentalOpen in IMG/M
3300034137Biocrust microbial communities from Mojave Desert, California, United States - 39SMCEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
4MG_027954502170459019Switchgrass, Maize And Mischanthus LitterMGLSFVVETGDGIRDGAGKSVGIGEGAISELMLLEVAPASFDSLPRT
C688J18823_1035799123300001686SoilMRLPLVVETGDGVRDGAFESVGLGEGTISEIMLLEVTPASLDVI
C688J35102_11797759213300002568SoilNGRWMSLSFLVEASDGVRDGAFESVEIGEGTIGQIMLLEVAPASLDSLPRT*
C688J35102_11895896223300002568SoilLSLVVEPGDSVRDSSGESVGIGEGAVGELILLEVAPASLDSLPRT*
C688J35102_12006624523300002568SoilMGDSVRDGAFESVGIGEGTIGQLMLLEVAPASLDSLPWT*
Ga0063454_10072776713300004081SoilMSLSFLVEASDGVRDGAFESVEIGEGTIGQIMLLEVAPASLD
Ga0063454_10138358613300004081SoilMRLPLVVEAGDRVRDGTGESVGIGKGTVGELMLLEVAPASLDVIQL
Ga0063356_10629168913300004463Arabidopsis Thaliana RhizosphereVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQ
Ga0066688_1092310513300005178SoilVVETGDSVRDGVGESVGVSEGAVGELMLLEVAPASLEVVQLGGVFRQS*
Ga0070676_1035795123300005328Miscanthus RhizosphereVLALVVEAGDGVRDGAGKSIGIGEGAVGELMLLEIAPASFDVVQFGG
Ga0068869_10019452613300005334Miscanthus RhizosphereMSLSLVVETGDSVRDGAFESVDIGESAIGKLMLLKIAPASFDVVQFGGVF
Ga0070675_10194695213300005354Miscanthus RhizosphereMNEVAARVETGESVRDRAGESVGIGEGTISEMMLFEVAPAPFDVVQFGGIF
Ga0070711_10120549213300005439Corn, Switchgrass And Miscanthus RhizosphereMRLSLVVETGDGVRDGAFESIGIGDGSIGQIMLLEVAPASFDSLPRT*
Ga0070700_10094574213300005441Corn, Switchgrass And Miscanthus RhizosphereMGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQFGGVFR
Ga0070678_10006113823300005456Miscanthus RhizosphereMRLPLVVETGDSVRDGASESVGIGEGTISEIMLLEVAPASLDSLPRT*
Ga0070685_1064871423300005466Switchgrass RhizosphereVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQFG
Ga0070684_10193495713300005535Corn RhizosphereMSLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTS
Ga0068854_10142636813300005578Corn RhizosphereLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVFG*
Ga0068866_1076354623300005718Miscanthus RhizosphereMSLSLVVETGDSVRDGAFESVGIGEGTIGQIMLLEVAPASLDVVQFGGVFR
Ga0068860_10199776513300005843Switchgrass RhizosphereVIEAINGVPDGAVESAGISEGAISERMLFEVAPASFHVVQLGAGGSHL
Ga0070716_10116898513300006173Corn, Switchgrass And Miscanthus RhizosphereMGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQ
Ga0097621_10007531643300006237Miscanthus RhizosphereMGLSLVVAPGDGVMDGMVEKVGIGEGAVAEVMLG*
Ga0075425_10205876823300006854Populus RhizosphereMSLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVF
Ga0079219_1152971213300006954Agricultural SoilLSLVVEAGDGVRDGAGESVGIDEGTIGQIVLLEVAPASFDIV*
Ga0079219_1170760813300006954Agricultural SoilLSFVVEVGDSVRDGAFESVGIGEGTIGQIMLLEVAPAS
Ga0075419_1040398023300006969Populus RhizosphereMGLPIVVETGNSVRDGASESVGIGEGSVGQIMLLEVTPASLDVIQLGGVFR*
Ga0079218_1062605113300007004Agricultural SoilMGLPLVVETGDSIRDGVGESVGIGEGAIGQIMLLEVAPASLDVVQLG
Ga0075418_1156299913300009100Populus RhizosphereLSLVVETGNGVRDGAGESVGIGEGTVGELMLLEVAPASFDV
Ga0105247_1016162413300009101Switchgrass RhizosphereLSLVVETGDGVRDSAGESIGIGEGAIGELMLLQVAPASFDIVQ
Ga0111538_1407887713300009156Populus RhizosphereLSLVVETGDSVRDGAGESIGIGEGAVGELMLLEVAPASFDVVQLGDVFRQS*
Ga0105248_1106407923300009177Switchgrass RhizosphereMGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDSLPRT*
Ga0105237_1172012413300009545Corn RhizosphereMSLSLVVETGDSVRDGAFESVRIGEGAIGELMLLEVAPASF
Ga0126307_1117803223300009789Serpentine SoilMGLPLVVETGDSVRDSASASVGINEGTVSELMLLEVAPASFDIVQLGGVFW*
Ga0126305_1065412823300010036Serpentine SoilMRLALVVEAINGVMDCTLESVGIGEGTIGELMLLEVAPASLDSLPRT*
Ga0126309_1049728623300010039Serpentine SoilDGVRDGAGESVGIGEGSVGELMLLEVAPASFDSLPRT*
Ga0126309_1060363233300010039Serpentine SoilMRFPLVVETGDSVRDGAGESVGIGEGTISEIMLLEVTPASLDVI
Ga0126308_1021917513300010040Serpentine SoilLSLVVETIDGVRDGAGESVGIGEGMIGELMLFEVAPASLDVVQF
Ga0126308_1034492413300010040Serpentine SoilMRLAFVVEAVNGIVDRTIESGGIGEGAVGELMQLEIAPTSFDCLPRT*
Ga0126312_1056159813300010041Serpentine SoilMRLLLVVETGDSVRDDMTESVGIGESMGGELMLLQVSPASFDIVQ
Ga0126310_1051374033300010044Serpentine SoilMRLPLVVETGDSVRNGSGENVGIGEGAIGELMLLEVAPA
Ga0126310_1171475313300010044Serpentine SoilMKLPLVVEPGDSARDGAGESVDIGESAIGKLMLLEVAPASFDVVQLRGVF
Ga0126311_1070142613300010045Serpentine SoilLSLVIEAGDSVMDDMGESIGIGEGTIGEIMLLQVAPAP
Ga0126311_1075721833300010045Serpentine SoilMRLSLVVEAGDSIMNGAVESVEIGGGMVGEIMLLEVTPASLDSLPRT*
Ga0126311_1101159723300010045Serpentine SoilMRLSLVVETGDSVRDGTGESVGIGEGTISEIMLLEVTPASLDVV
Ga0126311_1153732613300010045Serpentine SoilMRLSLVVEASDSIMNGAVESVEIGEGMVGEIMLLEVTPASLDSLPRT
Ga0126311_1181610613300010045Serpentine SoilMVAAGDGVMDGAVESIGIDEGAVGEIMLLEVAPASL
Ga0134128_1105240623300010373Terrestrial SoilMRLSLVVEAGDSVRDGAFESVGISEGTIGEIMLFEIAPASLDV
Ga0105239_1065376913300010375Corn RhizosphereMGLSFVVETGDGIRDGAGKSVGIGEGAVGELMLLEVAPASFD
Ga0105239_1100047313300010375Corn RhizosphereLSLVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQ
Ga0134122_1191127013300010400Terrestrial SoilLSLVVERGNRVRDGAGESVGVSEGAVSELMLLEVAPAPFDVVQFG
Ga0105246_1136872223300011119Miscanthus RhizosphereMGVSLVVETGDGVVDCAFESIGIGDGAIGQIMLLEVAPASLDIVQ
Ga0150985_10074694423300012212Avena Fatua RhizosphereLSFVVETGDGVRDGAGESVGIGEGSVGELMLLEVAPASFDIVQ
Ga0150985_10179278133300012212Avena Fatua RhizosphereMRLPLVIETGDSVRDGAGESVGIGEGAIGELMLLEVAPASFDVVQLR
Ga0150985_10212599613300012212Avena Fatua RhizosphereMGLSLVVETGDSIRDGAGESVGIGEGAIGELMLLEVAPASFDSLPRT*
Ga0150985_10241950113300012212Avena Fatua RhizosphereVVESGDSIRDGAGESVGIGEGAIGELMLLEVAPASFDVVQF
Ga0150985_10774545513300012212Avena Fatua RhizosphereLSFVVEVGDSVRDGAFESVGIGEGTIGQIMLLEVAPASFDIVQFGGVF
Ga0150985_11244322413300012212Avena Fatua RhizosphereLALVVEAGDSVRDGVGESIGIGEGSVGELMLLEVAPASFD
Ga0150985_11334622413300012212Avena Fatua RhizosphereMGLSLMVKAGDSVRDSAGESIGIGEGAVGELMLLEVAPASFDIVQFGGVFR
Ga0150985_11422243923300012212Avena Fatua RhizosphereLSLVVEAGDSVRDGAGESVGIGEGAVDEIMLLEVA
Ga0150985_11514578613300012212Avena Fatua RhizosphereMELSLVVETGDCIRDGAGEIVGIGEGAVGELMLLEV
Ga0150985_11574733623300012212Avena Fatua RhizosphereMGLSFVVETGDGIRDGAGKSVGIGEGAISELMLLEVAPASFDSLPRT*
Ga0150985_11880035813300012212Avena Fatua RhizosphereLSLVVETGDGVRDGAGESVGIGEGSIGELMLLEVAPASFDIVQFGGILRQPFEG
Ga0150985_12196329223300012212Avena Fatua RhizosphereMELSFVVEAGDSVRDSARESVGIGEGSVGELMLLEVAPASFDSLPRT*
Ga0150984_10057309013300012469Avena Fatua RhizosphereMGLPLVVETGDGVRDDTGESLDINERAVRELMLLEVAPASFDVVQFGGVFRQPFEG
Ga0150984_10564331833300012469Avena Fatua RhizosphereMRLPLVVETGDSVRDGAGESVGIGEGAIGELMLLE
Ga0150984_10840840613300012469Avena Fatua RhizosphereLSLVVETGDSVRDGVGESIGIGEGAVGELMLHEVAPASFDVVQLRGVFRQS*
Ga0150984_11323807223300012469Avena Fatua RhizosphereLALVVKTGDSVRDGAFESVDIGEGAIGELMLLEDAPASFDSLPRT*
Ga0150984_11368435513300012469Avena Fatua RhizosphereMGLSLMVKAGDSVRDSAGESIGIGEGAVGELMLLEVAPASFDIVQFGGVFR*
Ga0150984_11378609413300012469Avena Fatua RhizosphereVVETGDSVRDGAGESVGIGEGTISEIMLLEVTPASLD
Ga0150984_11712052823300012469Avena Fatua RhizosphereMGLSFMVKAGDSVRDGAGENVGIGEGTVGELMLLEVAPASFDSLPRT*
Ga0150984_11755848313300012469Avena Fatua RhizosphereMGLPLVVETGDSVMDGAVESADIGEGVVGEIMLLEVAPASLDVSFPPV*
Ga0150984_11896669113300012469Avena Fatua RhizosphereMRLSLVVKTGDSVRDGAFESVGISEGTIGEIMLFEIAPASLDSLPRT*
Ga0150984_11933899713300012469Avena Fatua RhizosphereMGLSLVIETGDSIGDGAFESVGIGEGMIGELMLLEVAPASLDIVQLGSV
Ga0150984_12038099713300012469Avena Fatua RhizosphereLSLVVEAGDSVRDGAGESVGVSEGAVGELMLLEIAPAPFDVVQFG
Ga0150984_12200889613300012469Avena Fatua RhizosphereMRLSLVVETGDSVRDGAGERVGIGEGAVGELMLLEVAPASFDIVQFWGVFGQPFE
Ga0150984_12335699513300012469Avena Fatua RhizosphereMRIPLVVETGDSVRDSASENVGIGESTISEIMLLEVAPASLDVIQFGGVFR*
Ga0164298_1053888713300012955SoilMRLSLVVETGDGVRDGAFESIGIGDGSIGQIMLLEVAPAS
Ga0164303_1094359113300012957SoilLVVETTDSVRDGAGESIGIGESSVGELMLLEVAPASFNVVQFGGVL*
Ga0164303_1106266613300012957SoilVETGDSVRDGVGESIGVAEGSVGELMLLEVAPASLEVVQLGGVFRQS*
Ga0157378_1195538913300013297Miscanthus RhizosphereLSLVVETGDSAKDGAVESVGIGEGTVGELMLLEVTPASLDIVQFGGVFRRS*
Ga0157378_1313958813300013297Miscanthus RhizosphereMRLPLVVETGDSVRDGASESVGIGEGTISEIMLLEVAPASLDVVQFGGVFR*
Ga0163162_1142547823300013306Switchgrass RhizosphereLSLVVETGDSVRDGAGESVGIGEGAVGELMLLEVAPA
Ga0163162_1265015013300013306Switchgrass RhizosphereVLALVVEAGDSVRDGAFESVGIDEGTIGELMLLEVAP
Ga0163163_1107192913300014325Switchgrass RhizosphereMRLSLVIETGDGVVDRAFESIGIGDGSIGQIMLLEVA
Ga0157380_1087299323300014326Switchgrass RhizosphereMRLPLVVQTGDSVRDGAGESVGIGEGTISEIMLLEVTPASLDGIQLGGIFRQPFEGE
Ga0182000_1049306723300014487SoilLPLVVETGDSVRDDAVESVGIGEDAAGELMLLEVAPAAFDIVQLRGVFWQSLEGEPRALG
Ga0157377_1156344913300014745Miscanthus RhizosphereMRLPLVVETGDSVMNGVGESIGIGEGAIGELMLLQVAPASFGSEAYFGSLRG*
Ga0132258_1396743423300015371Arabidopsis RhizosphereLELSFVVETSDGIRDGAGESIGIGEGAISELMLLEVAPASFDVVQFGGVFR*
Ga0132255_10532686323300015374Arabidopsis RhizosphereMRLSLVVEAGDSVGEGAGKSIGVGEVAIGELMLFEVAPA
Ga0163161_1007488953300017792Switchgrass RhizosphereMRLSLVVETGDSVRDGASESVGIGEGTISEIMLLE
Ga0190265_1160944313300018422SoilVVQTGDSVRDGAGESVGIGEGAIGQIMLLEVTPASLDVI
Ga0066667_1194374823300018433Grasslands SoilMVKAGDSVRDSAGESIGIGEGAVGELMLLEVAPASFDSLPRT
Ga0190268_1134678523300018466SoilLSLAVETGDSVRDGAFESVGIGEGMIGQKMLLEVTPASLDVIQLGGVFRQ
Ga0173479_1041686113300019362SoilLSLVVETGDSVRDGAGESVCIGEGAVGELMLLEVAPASFDVVQLGDVFRQS
Ga0207680_1048021113300025903Switchgrass RhizosphereMSLSLVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQ
Ga0207645_1108868413300025907Miscanthus RhizosphereMGLSLVVETGDSIRDGAGESVGIGEGAISELMLLEVAPASFDVVQLGSVFR
Ga0207652_1144823423300025921Corn RhizosphereMGLSFVVETGDGIRDGAGKSVGIGEGAVGELMLLEVAPASFDVVQ
Ga0207687_1008401733300025927Miscanthus RhizosphereMRLPLVVETGDSVRDGASESVGIGEGTISEIMLLEVAPASLDSLPRT
Ga0207679_1202020823300025945Corn RhizosphereMRLPLVVETGDSVRDGASESIGIGEGAVGELMLLEV
Ga0207658_1117000013300025986Switchgrass RhizosphereMSLSLVVETGDSVRDGAFESVGIGEGAISELMLLEVAPASFDVVQFGSVFR
Ga0207708_1051924713300026075Corn, Switchgrass And Miscanthus RhizosphereMRLSLVVETGDDVVDRAFESIGIGDGSIGQIMLLEVAPASFDVVQFGGV
Ga0207708_1138822513300026075Corn, Switchgrass And Miscanthus RhizosphereMGLSLVVEAGDSIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQLRGVFR
Ga0207676_1032955013300026095Switchgrass RhizosphereMSLSLVVETGDSVRDGGFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVF
Ga0207683_1109171523300026121Miscanthus RhizosphereLALVVEAGDSVGESIGIGDGAITEIMLLEVAPASFDI
Ga0209177_1002239333300027775Agricultural SoilMGLSFVVETGDGIRDGAGKSVGIGEGAISELMLLEVAPASFDVVQFGGVFR
Ga0209488_1114707423300027903Vadose Zone SoilVVEAGDSVRDGVGESVGIGECAVGELMLLEVAPASLDIVQLG
Ga0247713_109037623300028104SoilMRLPLVVETGDSVRNGAGESVGIGERAVGELMLLEVAPASFDSLPRT
Ga0268253_1001276643300030514AgaveMGLSFVVETGEGSRDGAGKSVGIGEGAVSELMLLEVAPASFDVVQFGG
Ga0308183_108729123300030988SoilVVEAGDSVGDGAGESIGIGESAVGELMLLEVAPASFDVVQFGGVFRQ
Ga0308189_1005603433300031058SoilVVETGDSVRDGAFESVGIGEGAIGELMLLEVAPTSLDVIQFGGVFRQPFD
Ga0310886_1057735023300031562SoilVVETGDSVRDGAGESVGIGEGSIGQIMLLEVAPASLDVI
Ga0308174_1177660023300031939SoilMGLSLVVETGDSVRNGMGESIGIGEGSVGELMLLEVA
Ga0308173_1220901413300032074SoilVVETGDNVRDSAGESVGIGKGAVGELMLFEVAPAPFD
Ga0334915_049018_729_8513300034132Hypolithic BiocrustMGLPLVVEAGDSVRDGAGESVGIGEGAIGELMLLEVAPASL
Ga0334943_053241_1_1533300034137BiocrustMRLPLVVETGDSIRDGAGESVGIGEGAIGELMLLEVAPASLDIVQLGGVFR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.