Metagenome / Metatranscriptome Family F080420

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080420
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	58 residues
Representative Sequence	MLSWELVDWEDAPPLVILHYRGKRPSNAGPNQPGIDQDLFTLTVENRGGEWVVTKYDAMY
Number of Associated Samples	99
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.78 %
% of genes from short scaffolds (< 2000 bps)	85.22 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.174 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (23.478 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.261 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 54.55% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF07690	MFS_1	43.48
PF08974	DUF1877	6.96
PF04892	VanZ	2.61
PF05569	Peptidase_M56	1.74
PF00478	IMPDH	1.74
PF10503	Esterase_PHB	0.87
PF01939	NucS	0.87
PF13184	KH_5	0.87
PF08445	FR47	0.87
PF13419	HAD_2	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1637	Endonuclease NucS, RecB family	Replication, recombination and repair [L]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.17 %
Unclassified	root	N/A	7.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	77.39 %
Unclassified	root	N/A	7.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.22 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.61 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.22 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.87 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.87 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.87 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.22 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.87 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.87 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.22 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.87 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.87 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.22 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.87 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.87 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2007427000\|2007522506	All Organisms → cellular organisms → Bacteria → Acidobacteria	830	Open in IMG/M
3300000567\|JGI12270J11330_10173216	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1000581	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	7392	Open in IMG/M
3300001471\|JGI12712J15308_10209697	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300001867\|JGI12627J18819_10500008	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300002245\|JGIcombinedJ26739_101534608	Not Available	562	Open in IMG/M
3300002245\|JGIcombinedJ26739_101747880	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300002245\|JGIcombinedJ26739_101844569	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300004152\|Ga0062386_100244445	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300004152\|Ga0062386_100379329	All Organisms → cellular organisms → Bacteria → Acidobacteria	1136	Open in IMG/M
3300004633\|Ga0066395_10542321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300005436\|Ga0070713_102042879	Not Available	556	Open in IMG/M
3300005526\|Ga0073909_10167299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300005541\|Ga0070733_10304126	All Organisms → cellular organisms → Bacteria → Acidobacteria	1054	Open in IMG/M
3300005542\|Ga0070732_10795484	Not Available	577	Open in IMG/M
3300005568\|Ga0066703_10390774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	834	Open in IMG/M
3300005602\|Ga0070762_10329261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	969	Open in IMG/M
3300005602\|Ga0070762_10453575	All Organisms → cellular organisms → Bacteria → Acidobacteria	834	Open in IMG/M
3300005994\|Ga0066789_10159212	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300006052\|Ga0075029_100593466	All Organisms → cellular organisms → Bacteria → Acidobacteria	739	Open in IMG/M
3300006102\|Ga0075015_100020565	All Organisms → cellular organisms → Bacteria	2916	Open in IMG/M
3300006162\|Ga0075030_100444359	All Organisms → cellular organisms → Bacteria → Acidobacteria	1032	Open in IMG/M
3300006162\|Ga0075030_100596668	All Organisms → cellular organisms → Bacteria → Acidobacteria	876	Open in IMG/M
3300006173\|Ga0070716_100222443	All Organisms → cellular organisms → Bacteria → Acidobacteria	1269	Open in IMG/M
3300006174\|Ga0075014_100033946	All Organisms → cellular organisms → Bacteria → Acidobacteria	2082	Open in IMG/M
3300009522\|Ga0116218_1072754	All Organisms → cellular organisms → Bacteria	1565	Open in IMG/M
3300009523\|Ga0116221_1022024	All Organisms → cellular organisms → Bacteria	3316	Open in IMG/M
3300009524\|Ga0116225_1074514	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300009759\|Ga0116101_1054853	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300009792\|Ga0126374_10341207	All Organisms → cellular organisms → Bacteria → Acidobacteria	1023	Open in IMG/M
3300009839\|Ga0116223_10885403	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300010048\|Ga0126373_10264960	All Organisms → cellular organisms → Bacteria → Acidobacteria	1698	Open in IMG/M
3300010048\|Ga0126373_11996191	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300010361\|Ga0126378_13123291	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300011120\|Ga0150983_16473746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	709	Open in IMG/M
3300012210\|Ga0137378_11444680	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300012357\|Ga0137384_10307035	All Organisms → cellular organisms → Bacteria → Acidobacteria	1318	Open in IMG/M
3300012971\|Ga0126369_13294663	All Organisms → cellular organisms → Bacteria → Acidobacteria	529	Open in IMG/M
3300015373\|Ga0132257_101220178	All Organisms → cellular organisms → Bacteria → Acidobacteria	952	Open in IMG/M
3300017822\|Ga0187802_10390467	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300017925\|Ga0187856_1085216	All Organisms → cellular organisms → Bacteria → Acidobacteria	1285	Open in IMG/M
3300017934\|Ga0187803_10249647	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300017936\|Ga0187821_10034294	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300017943\|Ga0187819_10333577	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300017943\|Ga0187819_10445494	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300017955\|Ga0187817_10571249	All Organisms → cellular organisms → Bacteria → Acidobacteria	721	Open in IMG/M
3300017973\|Ga0187780_10831192	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300017994\|Ga0187822_10129405	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300017995\|Ga0187816_10314032	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300018006\|Ga0187804_10135813	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300018012\|Ga0187810_10251856	All Organisms → cellular organisms → Bacteria → Acidobacteria	724	Open in IMG/M
3300018012\|Ga0187810_10302218	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300018030\|Ga0187869_10400764	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300018037\|Ga0187883_10447220	All Organisms → cellular organisms → Bacteria → Acidobacteria	664	Open in IMG/M
3300018046\|Ga0187851_10306176	All Organisms → cellular organisms → Bacteria → Acidobacteria	920	Open in IMG/M
3300018062\|Ga0187784_10012254	All Organisms → cellular organisms → Bacteria	6921	Open in IMG/M
3300018085\|Ga0187772_10962755	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300020579\|Ga0210407_10317406	All Organisms → cellular organisms → Bacteria → Acidobacteria	1217	Open in IMG/M
3300020580\|Ga0210403_10177657	All Organisms → cellular organisms → Bacteria → Acidobacteria	1745	Open in IMG/M
3300020581\|Ga0210399_10028259	All Organisms → cellular organisms → Bacteria	4476	Open in IMG/M
3300020581\|Ga0210399_10838333	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300021170\|Ga0210400_10037339	All Organisms → cellular organisms → Bacteria → Acidobacteria	3767	Open in IMG/M
3300021170\|Ga0210400_10455226	All Organisms → cellular organisms → Bacteria → Acidobacteria	1056	Open in IMG/M
3300021402\|Ga0210385_10365238	All Organisms → cellular organisms → Bacteria → Acidobacteria	1080	Open in IMG/M
3300021406\|Ga0210386_10257422	All Organisms → cellular organisms → Bacteria → Acidobacteria	1490	Open in IMG/M
3300021406\|Ga0210386_10645093	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300021407\|Ga0210383_10113001	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300021420\|Ga0210394_11197521	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300021432\|Ga0210384_10574596	All Organisms → cellular organisms → Bacteria → Acidobacteria	1013	Open in IMG/M
3300021474\|Ga0210390_10192053	All Organisms → cellular organisms → Bacteria → Acidobacteria	1727	Open in IMG/M
3300021474\|Ga0210390_10896836	All Organisms → cellular organisms → Bacteria → Acidobacteria	729	Open in IMG/M
3300021477\|Ga0210398_11498667	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300021478\|Ga0210402_11307358	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300021559\|Ga0210409_10033012	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4962	Open in IMG/M
3300025509\|Ga0208848_1070872	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300025906\|Ga0207699_10913711	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300025928\|Ga0207700_10165802	All Organisms → cellular organisms → Bacteria → Acidobacteria	1838	Open in IMG/M
3300025939\|Ga0207665_10590279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	866	Open in IMG/M
3300026529\|Ga0209806_1118424	All Organisms → cellular organisms → Bacteria → Acidobacteria	1080	Open in IMG/M
3300027548\|Ga0209523_1036614	All Organisms → cellular organisms → Bacteria → Acidobacteria	992	Open in IMG/M
3300027604\|Ga0208324_1052851	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1180	Open in IMG/M
3300027641\|Ga0208827_1012519	All Organisms → cellular organisms → Bacteria	3228	Open in IMG/M
3300027696\|Ga0208696_1207594	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300027812\|Ga0209656_10471398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300027826\|Ga0209060_10080918	All Organisms → cellular organisms → Bacteria → Acidobacteria	1531	Open in IMG/M
3300027862\|Ga0209701_10476432	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300027867\|Ga0209167_10197721	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300027884\|Ga0209275_10620789	Not Available	621	Open in IMG/M
3300027905\|Ga0209415_10556129	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300027908\|Ga0209006_10084780	All Organisms → cellular organisms → Bacteria	2818	Open in IMG/M
3300027911\|Ga0209698_11110908	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300027911\|Ga0209698_11292342	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300028775\|Ga0302231_10350647	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300028906\|Ga0308309_11013879	All Organisms → cellular organisms → Bacteria → Acidobacteria	719	Open in IMG/M
3300029636\|Ga0222749_10373585	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300030707\|Ga0310038_10053534	All Organisms → cellular organisms → Bacteria	2264	Open in IMG/M
3300031231\|Ga0170824_112619334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300031231\|Ga0170824_118544046	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300031249\|Ga0265339_10242341	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300031249\|Ga0265339_10581815	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031573\|Ga0310915_11017090	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300031712\|Ga0265342_10117072	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300031715\|Ga0307476_10462973	All Organisms → cellular organisms → Bacteria → Acidobacteria	939	Open in IMG/M
3300031753\|Ga0307477_10143544	All Organisms → cellular organisms → Bacteria → Acidobacteria	1665	Open in IMG/M
3300031890\|Ga0306925_11586249	All Organisms → cellular organisms → Bacteria → Acidobacteria	637	Open in IMG/M
3300031962\|Ga0307479_11692886	All Organisms → cellular organisms → Bacteria → Acidobacteria	586	Open in IMG/M
3300032174\|Ga0307470_10108799	All Organisms → cellular organisms → Bacteria → Acidobacteria	1607	Open in IMG/M
3300032783\|Ga0335079_10704481	All Organisms → cellular organisms → Bacteria → Acidobacteria	1055	Open in IMG/M
3300032898\|Ga0335072_10756947	All Organisms → cellular organisms → Bacteria → Acidobacteria	938	Open in IMG/M
3300032955\|Ga0335076_10695725	All Organisms → cellular organisms → Bacteria → Acidobacteria	898	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.52%
Host-Associated	Host-Associated	3.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.04%
Aquatic	Environmental → Aquatic	23.48%
Plants	Host-Associated → Plants	3.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.17%
Freshwater	Environmental → Aquatic → Freshwater	17.39%
Sediment	Environmental → Aquatic → Sediment	6.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.61%
Peat	Environmental → Terrestrial → Peat	0.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.52%
Loam	Environmental → Terrestrial → Soil → Loam	15.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.30%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	9.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.87%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.39%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	9.57%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.35%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.35%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.48%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.48%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.87%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2007427000	Uranium contaminated groundwater from Oak Ridge Integrated Field Research Center, Tennessee	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027641	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2007548746	2007427000	Groundwater	APPLVIWHYRGKRPSNAGPNQPGIDQDLFTLTVENKGGEWVVTKYDAMY
JGI12270J11330_101732162	3300000567	Peatlands Soil	DWEDAPPLVVLHYRGKRPSNADPTQPGIDQDLFTVTVEHKGGDWVVTKYDAMY*
AP72_2010_repI_A01DRAFT_10005811	3300000579	Forest Soil	ELVDWEDAPPLVVLHYRGQRPSNAGPTQAGIDQSLFTLTLEHRPADWIVTKYDAMY*
JGI12712J15308_102096972	3300001471	Forest Soil	HFLCDSEAQHPLLSWQLVDWEEAPPLIILHYRGKRSNGAAQATDQELFTVTLENKGGGWAVTKYDAMY*
JGI12627J18819_105000082	3300001867	Forest Soil	WELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY*
JGIcombinedJ26739_1015346081	3300002245	Forest Soil	IILHYRGKRPSNAGPAQRGIDQDLFTLTLENQRSGWVVTKYDAMY*
JGIcombinedJ26739_1017478801	3300002245	Forest Soil	LLSWELVDWEDAAPLIILHYRGKRLSNAGPAQPGTEQDLFSLTMARQSGDWSVTKYDAMY
JGIcombinedJ26739_1018445692	3300002245	Forest Soil	LCDSEAQHPLLSWQLVDWEEAPPLIILHYRGKRSNGAAQATDQELFTVTLENKGGGWAVTKYDAMY*
Ga0062386_1002444453	3300004152	Bog Forest Soil	EASPLVILHYRGKRPSNAGPTQPGIDQDLFTVTVEHKGGDWVVTKYDAMY*
Ga0062386_1003793293	3300004152	Bog Forest Soil	EASPLVILHYRGKRPSNAGPAQSGIDQDLFTVTVEHKGGDWVVTKYDAMY*
Ga0066395_105423211	3300004633	Tropical Forest Soil	EGDHPLLSWELVDWEDAPPLVVLRYRGQRPSNAGPTQAGIDQSLFTLTLEHRPGEWAVTKYDAMY*
Ga0070713_1020428792	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	WEDAPPLVILHYRGKRPSNAGPNQSGIDNDQFTLTIENQAGQWVVTKYDAMY*
Ga0073909_101672993	3300005526	Surface Soil	AEHPLLSWELVDWEDAPPLVVLHYRGQRPSNAGPTQAGIDQSLFTLTLEHRPADWVVTKYDAMY*
Ga0070733_103041263	3300005541	Surface Soil	PPLIILHYRGTRPSNAGPGQSGIDHDQFTLTVENQAGQWVVTKYDAMY*
Ga0070732_107954842	3300005542	Surface Soil	PLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY*
Ga0066703_103907743	3300005568	Soil	LHYRGKRPSNAGPTRPGIDQDLFTLTVENKGGEWVVTKYDAMY*
Ga0070762_103292612	3300005602	Soil	PLVILHYRGKRHSNAGPGQPGIDQDQFTLTVENEAGQWVVTKYDAMY*
Ga0070762_104535751	3300005602	Soil	WELVDWEEAGPLIILHYRGKRETNAGPGQAGIDQDLFTLTVARQGGDWLVTKYDAMY*
Ga0066789_101592122	3300005994	Soil	DWEDAPPLVILHYRGKRPSNAGPTQLGIDQDLFTLTVEHKPGEWVVTKYDAMY*
Ga0075029_1005934661	3300006052	Watersheds	EHPLLSWELVDWEDAPPLVVLHYRGQRPSNAGPTQAGIDQSLFTLTLEHRPGEWVVTKYDALY*
Ga0075015_1000205651	3300006102	Watersheds	YICSSEAQHPLLSWELVDWEEARPLIILHYRGKRPSNAGPSQPGIDQDLLTLTLTHQGADWVVTKYDAMY*
Ga0075030_1004443591	3300006162	Watersheds	HYICKSEAQHPLLSWEMVDWEDAPPLTILHYRGKRPSNAGPAQPGIDQDLFTLTLTHQGGEWVVTKYDAMY*
Ga0075030_1005966682	3300006162	Watersheds	SEAQHPLLSWELVDWEDAPPLIILHYRGKRPSNAGPTGPGIDQDLFTLTMEHKPGEWVVTKYDAMY*
Ga0070716_1002224433	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	YICKSESEHPLLSWELIDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRIGEWAVTKYDAMY*
Ga0075014_1000339463	3300006174	Watersheds	ELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY*
Ga0116218_10727543	3300009522	Peatlands Soil	VHPLLSWQLVDWEDAPPLVVLHYRGKRPSNADPTQPGIDQDLFTVTVEHKGGDWVVTKYDAMY*
Ga0116221_10220241	3300009523	Peatlands Soil	EAEHPMLSWELVDWEDAPPLVILHYRGKRPSNAGPNQPGIDQDLFTLTVENRGGEWVVTKYDAMY*
Ga0116225_10745143	3300009524	Peatlands Soil	PLLSWQLVDWEDAPPLVVLHYRGKRPSNADPTQPGIDQDLFTVTVEHKGGDWVVTKYDAMY*
Ga0116101_10548531	3300009759	Peatland	LHYRGKRPSNAGPTQSGIDQDLFTVTVENKGGEWAVTKYDAMY*
Ga0126374_103412071	3300009792	Tropical Forest Soil	LSWELVDWEDAPPLVVLHYRGQRPSNAGPTQAGIDQSLFTLTLEHRPGEWAVTKYDAMY*
Ga0116223_108854032	3300009839	Peatlands Soil	SEAQHPLLSWELVDWEEAPPLVILHYRGKRPSNAGPAQAGIDQDLFTLTVSHKGGDWVVTKYDAMY*
Ga0126373_102649603	3300010048	Tropical Forest Soil	DWEDAPPLVILHYRGKRPSNAGPGQPGIDNDQFTLTVENQAGQWVVTKYDAMY*
Ga0126373_119961911	3300010048	Tropical Forest Soil	PLLSWELVDWEEARPLVILHYRGKRPSNAGPNEPGIDQDLFTLTVENKAGQWTVTKYDAMY*
Ga0126378_131232912	3300010361	Tropical Forest Soil	DWEEAPPLVILHYRGKRPSNAGPGQPGIDNDQFTLTVENQAGQWVVTKYDAMY*
Ga0134121_116757891	3300010401	Terrestrial Soil	PLIILHYRGKRESNAGPNQPGIDQDLFTVTTERKGGQWVVTKYDAMY*
Ga0150983_164737461	3300011120	Forest Soil	ILHYRGKRPSNAGPTQSGIDQDLFTVTVENKGGQWAVTKYDAMY*
Ga0137381_117884642	3300012207	Vadose Zone Soil	GPLIILHYRGKRESNAGPNQPGIDQDLFTVTTERKGGQWVVTKYDAMY*
Ga0137378_100789671	3300012210	Vadose Zone Soil	EAGPLIILHYRGKRESNAGPNQPGIDQDLFTVTTERKGGQWVVTKYDAMY*
Ga0137378_114446801	3300012210	Vadose Zone Soil	YICKSEEQHPLLSWELVDWEEATPLIILHYRGKRPSNAGPSQPGIDQDLFTLTVENQRGQWVVTKYDAMY*
Ga0137384_103070352	3300012357	Vadose Zone Soil	IILHYRGKRASNAGPAQPGIDQDLFTLTLAHQGSDWAVTKYDAMY*
Ga0126369_132946632	3300012971	Tropical Forest Soil	YICKQEGDHPLLSWQLVDWEDAPPLVVLHYRGQRPSNAGPTQAGIDQSLFTLTLEHRPGEWLVTKYDALY*
Ga0132257_1012201783	3300015373	Arabidopsis Rhizosphere	WELVEWEDAPPLVVLHYRGKRPSNAGAGQRGIDEGLFTLTLEHRVGEWAVTKYDAMY*
Ga0187802_103904671	3300017822	Freshwater Sediment	ILHYRGKRPSNAGPAQPGIDQDLFTLTLTHQGGDLVVTKYDAMY
Ga0187856_10852161	3300017925	Peatland	LVDWEDAPPFIILHYRGKRLSNAGPDQPGVDQDLFTLTMENKGAEWDVTKYDAMY
Ga0187803_102496472	3300017934	Freshwater Sediment	LLSWQLVDWEDAPPLVILHYRAKRPSNAGPDQPGIDQGLFTLTLENRGGEWNVTKYDAMY
Ga0187821_100342943	3300017936	Freshwater Sediment	SWELVDWEDAPPLVILHYRGKRPSNAGPSQPGIDQDLFTLTIENKGAGWVVTKYDAMY
Ga0187819_103335771	3300017943	Freshwater Sediment	PLVILHYRGKRPSNAGPTQSGIDQDLFTLTVENKAGDWVVTKYDAMY
Ga0187819_104454941	3300017943	Freshwater Sediment	EAEHPLLSWQLVEWEEAPPLIILHYRGKRPSNAGPAQPGIDQDLFTLTLTHQGGDWVVTKYDAMY
Ga0187817_105712491	3300017955	Freshwater Sediment	ICKSETQHPLLSWQLVDWEDAPPFIILHYRGKRLSNAGPDQPGVDQDLFTLTMENKGAEWDVTKYDAMY
Ga0187780_108311921	3300017973	Tropical Peatland	RFICKSEAQHPLLSWALVDWEDAPPLVILHYRAKRLSNAGPDQPGIDQDLFTLTLTHQGADWAVTKYDAMY
Ga0187822_101294052	3300017994	Freshwater Sediment	WELVDWEDAPPLVILHYRGKRPSNAGPSQPGIDQDLFTVTIENKGAGWVVTKYDAMY
Ga0187816_103140322	3300017995	Freshwater Sediment	EWEEAPPLIILHYRGKRPSNAGPAQPGIDQDLFTLTLTHQGGDLVVTKYDAMY
Ga0187804_101358132	3300018006	Freshwater Sediment	ICKSEAQHPLLSWQLVDWEDAPPYVILHYRGTRLSNARPDQPGVDQDLFTLTMENKVSEWVVTKYDAMY
Ga0187810_102518561	3300018012	Freshwater Sediment	PLVILHYRGKRPSNAGPNQAGIDQDLFTLTVENKAGLWTVTKYDAMY
Ga0187810_103022182	3300018012	Freshwater Sediment	WQLVDWEDAPPYVILHYRGKRLSNGGPDQPGVDQDLFTLTMENKVSEWVVTKYDAMY
Ga0187869_104007642	3300018030	Peatland	KSETQHPLLSWQLVDWEDAPPFIILHYRGKRLSNAGPDQPGVDQDLFTLTMENKGAEWDVTKYDAMY
Ga0187883_104472201	3300018037	Peatland	SWELVDWEDAPPLVILHYRGKRPSNAGPTQSGIDQDLFTVTVENKGGEWAVTKYDAMY
Ga0187851_103061762	3300018046	Peatland	SWELVDWEDAPPLVILHYRGKRPSNAGPAGPGIDQDLFTVTVENKAGEWDVTKYDAMY
Ga0187784_100122547	3300018062	Tropical Peatland	ICKSEAQHPLLSWTLVDWEDAPPLVILHYRARRLSNAGPDQPGIDQDLFTLTIEHKAGEWNVTKYDAMY
Ga0187772_109627552	3300018085	Tropical Peatland	LRRAGNWQPITGYWQLVDWEDAPPLVILHYRAKRLSNAAPDQPGIDQGLFTVTLENKGSEWDVTKYDAMY
Ga0187770_115945441	3300018090	Tropical Peatland	HYRGKRPSNAGPNQAGIDQDLFTLTLENKAGQWTVTKYDAMY
Ga0210407_103174062	3300020579	Soil	SESEHPLLSWELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQGLFTLTLEHRVGDWAVTKYDAMY
Ga0210403_101776571	3300020580	Soil	HPLLSWELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY
Ga0210399_100282594	3300020581	Soil	WEDAPPLVVLHYRGKRPSNAGPDQPGIDQGLFTLTLEHRVGDWAVTKYDAMY
Ga0210399_108383332	3300020581	Soil	VILHYRGKRPSNAGPGQPGIDQDQFTLTVENEAGQWVVTKYDAMY
Ga0210400_100373391	3300021170	Soil	SWELVDWEDASPLIILHYRGKRLSNGAPNQPGVDQDLFTLTMAHQGADWAVTKYDAMY
Ga0210400_104552261	3300021170	Soil	VDWEDAPPLIVLHYRGKRPSNARPDQPGIDQDLFTVTVEHKGGDWVVTKYDAMY
Ga0210385_103652382	3300021402	Soil	ICKSEEQHPLLSWQLVDWEDAPPLIVLHYRGKRPSNARPDQPGIDQDLFTVTVEHKGGDWVVTKYDAMY
Ga0210389_103366353	3300021404	Soil	HYRGERETNAGPGQAGIDQDLFTLTVARQGGDWLVTKYDAMY
Ga0210386_102574221	3300021406	Soil	YICKSESEHPLLSWELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY
Ga0210386_106450931	3300021406	Soil	PLLSWQLADWEEAPPLVILHYRGKRPSNAAPNQPGIDQDQFTLTVENEGGRWVVTKYDAM
Ga0210383_101130011	3300021407	Soil	SWELVDWEEAPPLIILHYRGTRQSASAQSGTDQDLFTVTTEHKGGDWVVTKYDAMY
Ga0210394_111975211	3300021420	Soil	YRGKRPSNAGPGQPGIDQDQFTLTVENEAGQWVVTKYDAMY
Ga0210384_105745962	3300021432	Soil	PLVSWELVDWEDAPPLIILHYRAKRVSNAGPDRPGVDQDLFTLTMENKRGQWDVSKYDAM
Ga0210390_101920533	3300021474	Soil	APPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY
Ga0210390_108968361	3300021474	Soil	CASEVQHPLLSWELVDWEEAGPLIVLHYRGKRETNAGPGQAGIDQDLFTLTVARQGGDWLVTKYDAMY
Ga0210398_114986671	3300021477	Soil	ELVDWEDAPPLVILHYRGKRPSNAGPTQSGIDQDLFTVTVENKGGQWAVTKYDAMY
Ga0210402_113073581	3300021478	Soil	SSEAQHPLLSWELVDWEDAPPLIILHYRGKRPSNAAPNQPGIDQDLFTLTLLNKGGDWTVTKYDAMY
Ga0210409_100330121	3300021559	Soil	LVILHYRGKRPSNAGPTQAGIDQDLFTVTVTHKAGEWAVTKYDAMY
Ga0208848_10708721	3300025509	Arctic Peat Soil	LSWELVDWEDAPPLVILHYRGKRPSNAGPTQLGIDQDLFTLTVEHKPGEWVVTKYDAMY
Ga0207699_109137111	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	WEEAGPLIVLHYRGKRETNAGPGQAGIDQDLFTVTVARKGGDWLVTKYDAMY
Ga0207700_101658021	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AKHPLLSWELVEWEEAGPLIILHYRGKRESNAGPNQPGIDQDLFTVTTERKGGQWVVTKYDAMY
Ga0207665_105902793	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	WEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRIGDWAVTKYDAMY
Ga0209806_11184243	3300026529	Soil	ILHYRGKRPSNAGPTRPGIDQDLFTLTVENKGGEWVVTKYDAMY
Ga0209523_10366142	3300027548	Forest Soil	EAPPLVILHYRGKRPSNAGPDQRGIDQDLFTLTVEHKGPDWVVTKYDAMY
Ga0208324_10528511	3300027604	Peatlands Soil	QHPLLSWQLVDWEDAPPLVVLHYRGKRPSNADPTQPGIDQDLFTVTVEHKGGDWVVTKYDAMY
Ga0208827_10125194	3300027641	Peatlands Soil	MLSWELVDWEDAPPLVILHYRGKRPSNAGPNQPGIDQDLFTLTVENRGGEWVVTKYDAMY
Ga0208696_12075941	3300027696	Peatlands Soil	SWQLVDWEDAPPLIILHYRGKRPSNAGPAQPGIDQDLFTLTMTHQGADWVVTKYDAMY
Ga0209656_104713982	3300027812	Bog Forest Soil	VEWEEASPLVILHYRGKRPSNAGPTQPGIDQDLFTVTVEHKGGDWVVTKYDAMY
Ga0209060_100809181	3300027826	Surface Soil	KYICSSEAQHPLLSWELVDWEEAPPLIVLHYRGKRPSNAAPNQPGIDQDLFTVTLEHQGVQWVVTKYDAMY
Ga0209701_104764321	3300027862	Vadose Zone Soil	YICSSEAQHPLLSWELVDWEEAQPLIILHYRGKRPSNAGPAQPGIDQDLFTLTLAHQGSDWAVTKYDAMY
Ga0209167_101977211	3300027867	Surface Soil	DWEDAPPLIILHYRGTRPSNAGPGQSGIDHDQFTLTVENQAGQWVVTKYDAMY
Ga0209275_106207892	3300027884	Soil	LHYRGKRETNAGPGQAGIDQDLFTLTVARQGGDWLVTKYDAMY
Ga0209415_105561292	3300027905	Peatlands Soil	LLSWQLVDWEDAPPLIILHYRGKRPSNAGPAQPGIDQDLFTLTMTHQGADWVVTKYDAMY
Ga0209006_100847804	3300027908	Forest Soil	DAPPLIILHYRGKRPSNAAPNQPGIDQDLFTLTMTHEGAGWVVTKYDAMY
Ga0209698_111109081	3300027911	Watersheds	WELIDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY
Ga0209698_112923421	3300027911	Watersheds	HYICKSEAQHPLLSWEMVDWEDAPPLTILHYRGKRPSNAGPAQPGIDQDLFTLTLTHQGGEWVVTKYDAMY
Ga0302231_103506471	3300028775	Palsa	WELVDWEDAPPLVILHYRGKRPSNADPTQPGIDQDLFTVTVENKAGQWAVTKYDAMY
Ga0308309_110138792	3300028906	Soil	ELVDWEDAAPLIILHYRGKRLSNGGPAQPGVDQDLFTLTMAHQGAGWMVTKYDAMY
Ga0222749_103735851	3300029636	Soil	WELVDWEDAPPLIILHYRAKRVSNAGPDRPGVDQDLFTLTMENKRGQWDVSKYDAMY
Ga0310038_100535341	3300030707	Peatlands Soil	ICSSEAQHPLLSWELVDWEEAPPLVILHYRGKRPSNAGPTQAGIDQDLFTVTVTHKGGEWVVTKYDAMY
Ga0170824_1126193341	3300031231	Forest Soil	DWEEAQPLIILHYRGKRPSNAGPAQPGIDQDLFTLTLAHQGADWAVTKYDAMY
Ga0170824_1185440461	3300031231	Forest Soil	ICDSEAKHPLLSWELVEWEEAGPLIILHYRGKRESNAGPNQPGIDQDLFTVTTERKGGQWVVTKYDAMY
Ga0265339_102423412	3300031249	Rhizosphere	EWEEAGPLIILHYRGKREANAGPGQAGIDQDLFTVTVARKGGELLVTKYDANY
Ga0265339_105818151	3300031249	Rhizosphere	DWEEAPPLIVLHYRGKRPSNAGPAQAGIDQDLFTLTLTHEGADWVVTKYDAMY
Ga0310915_110170901	3300031573	Soil	WEDAPPLVVLHYRGQRPSNAGPTQAGIDQSLFTLTLEHRPGEWVVTKYDAMY
Ga0265342_101170721	3300031712	Rhizosphere	CKSEAEHPLLSWELADWEEAPPLIVLHYRGKRPSNAGPAQAGIDQDLFTLTLTHEGADWVVTKYDAMY
Ga0307476_104629731	3300031715	Hardwood Forest Soil	SESEHPLLSWELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQSLFTLTLEHRVGDWAVTKYDAMY
Ga0307477_101435441	3300031753	Hardwood Forest Soil	RYICKSEADHPLLSWELVDWEDAPPLVILHYRGKRPSNAGPAQAGIDQDLFTLTVENKGSGWVVTKYDAMY
Ga0306925_115862492	3300031890	Soil	ADWEDAPPLVILHYRGKRPSNAAPNQPGIDNDQFALTIENQAGQWVVTKYDAMY
Ga0307479_116928861	3300031962	Hardwood Forest Soil	EHPLLSWELVEWEEAPPLVILHYRGKRPSNAGPDQRGIDQDLFTLTVEHKGADWVVTKYDAMY
Ga0307470_101087991	3300032174	Hardwood Forest Soil	KSESEHPLLSWELVDWEDAPPLVVLHYRGKRPSNAGPDQPGIDQGLFTLTLEHRVGDWAVTKYDAMY
Ga0335079_107044811	3300032783	Soil	EDAPPFIILHYRGKRLANAGPAQPGIDQDIFTLTMEHQPAGWTVTKYDAMY
Ga0335072_107569471	3300032898	Soil	DLVDWEDAPPLVILHYRGKRPSNRGPNEPGIDQDLFTLTVENEQGQWVVTKYDAMY
Ga0335076_106957252	3300032955	Soil	SSEAQHPLLSWQLVDWEDAPPLVILHYRAKRPSNAGPAQPGIDQDLFTVTMEHQAVGWTVTKYDAMY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080420

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences