Metagenome / Metatranscriptome Family F080456

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F080456
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	77 residues
Representative Sequence	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID
Number of Associated Samples	85
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	24.35 %
% of genes near scaffold ends (potentially truncated)	27.83 %
% of genes from short scaffolds (< 2000 bps)	90.43 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (69.565 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (26.956 % of family members)
Environment Ontology (ENVO)	Unclassified (35.652 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.91% β-sheet: 36.89% Coil/Unstructured: 60.19%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.43.4.3: Riboflavin synthase	d1kzla2	1kzl	0.75152
b.43.4.3: Riboflavin synthase	d1i8da2	1i8d	0.74737
b.43.4.0: automated matches	d5ylya1	5yly	0.74472
b.43.4.0: automated matches	d4gqnb2	4gqn	0.74378
b.43.4.2: Ferredoxin reductase FAD-binding domain-like	d1krha1	1krh	0.73628

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00011	HSP20	14.78
PF00149	Metallophos	11.30
PF03069	FmdA_AmdA	5.22
PF01841	Transglut_core	1.74
PF00072	Response_reg	0.87
PF04041	Glyco_hydro_130	0.87
PF13091	PLDc_2	0.87
PF13565	HTH_32	0.87
PF16483	Glyco_hydro_64	0.87
PF05016	ParE_toxin	0.87
PF09917	DUF2147	0.87
PF02653	BPD_transp_2	0.87
PF06832	BiPBP_C	0.87
PF05974	DUF892	0.87
PF13476	AAA_23	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	14.78
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	5.22
COG2152	Predicted glycosyl hydrolase, GH43/DUF377 family	Carbohydrate transport and metabolism [G]	0.87
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.87
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
All Organisms	root	All Organisms	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
cellular organisms	root	All Organisms → cellular organisms	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.22 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	2.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.22 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	2.61 %
Candidatus Hydrogenedentes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes	1.74 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.87 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	2.61 %
unclassified Candidatus Hydrogenedentes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes	1.74 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	2.61 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	1.74 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.74 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	2.61 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	1.74 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.74 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	2.61 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	1.74 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.74 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.57 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	2.61 %
Candidatus Hydrogenedentes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	1.74 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.74 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.87 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.87 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.87 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12766248	Not Available	965	Open in IMG/M
3300001171\|JGI12685J13342_101513	Not Available	564	Open in IMG/M
3300001593\|JGI12635J15846_10420039	Not Available	803	Open in IMG/M
3300002245\|JGIcombinedJ26739_100495802	Not Available	1098	Open in IMG/M
3300002245\|JGIcombinedJ26739_100557320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1023	Open in IMG/M
3300002245\|JGIcombinedJ26739_101756453	Not Available	520	Open in IMG/M
3300002669\|Ga0005479J37267_107162	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300002675\|Ga0005473J37261_103525	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1405	Open in IMG/M
3300002677\|Ga0005475J37263_119102	Not Available	544	Open in IMG/M
3300004099\|Ga0058900_1000607	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300004117\|Ga0058893_1339734	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300004118\|Ga0058886_1364629	Not Available	704	Open in IMG/M
3300004120\|Ga0058901_1021599	All Organisms → cellular organisms → Bacteria	1433	Open in IMG/M
3300004120\|Ga0058901_1268148	Not Available	523	Open in IMG/M
3300004631\|Ga0058899_10112252	Not Available	512	Open in IMG/M
3300004631\|Ga0058899_10149243	Not Available	503	Open in IMG/M
3300004631\|Ga0058899_10215741	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1269	Open in IMG/M
3300004635\|Ga0062388_101398828	Not Available	702	Open in IMG/M
3300005436\|Ga0070713_101080771	Not Available	775	Open in IMG/M
3300005437\|Ga0070710_10665383	Not Available	731	Open in IMG/M
3300005437\|Ga0070710_11070087	Not Available	591	Open in IMG/M
3300005455\|Ga0070663_102126382	Not Available	506	Open in IMG/M
3300005468\|Ga0070707_100204281	Not Available	1926	Open in IMG/M
3300005471\|Ga0070698_101852863	Not Available	556	Open in IMG/M
3300005518\|Ga0070699_100005668	All Organisms → cellular organisms → Bacteria	10938	Open in IMG/M
3300005518\|Ga0070699_100362698	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300005548\|Ga0070665_100327477	Not Available	1536	Open in IMG/M
3300005602\|Ga0070762_10635699	Not Available	711	Open in IMG/M
3300005602\|Ga0070762_10936342	Not Available	592	Open in IMG/M
3300005921\|Ga0070766_10855994	Not Available	621	Open in IMG/M
3300006028\|Ga0070717_12098207	Not Available	509	Open in IMG/M
3300006050\|Ga0075028_100856597	Not Available	557	Open in IMG/M
3300006172\|Ga0075018_10291567	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300006176\|Ga0070765_100302462	Not Available	1479	Open in IMG/M
3300006176\|Ga0070765_100723771	All Organisms → cellular organisms → Bacteria	940	Open in IMG/M
3300006893\|Ga0073928_10297420	Not Available	1214	Open in IMG/M
3300006893\|Ga0073928_10574001	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300009700\|Ga0116217_10805594	Not Available	578	Open in IMG/M
3300010154\|Ga0127503_11305692	Not Available	788	Open in IMG/M
3300010341\|Ga0074045_11005702	Not Available	524	Open in IMG/M
3300010343\|Ga0074044_10234684	All Organisms → cellular organisms → Bacteria	1213	Open in IMG/M
3300010343\|Ga0074044_10666967	Not Available	679	Open in IMG/M
3300010398\|Ga0126383_12822430	Not Available	567	Open in IMG/M
3300010858\|Ga0126345_1182371	Not Available	549	Open in IMG/M
3300011119\|Ga0105246_11182671	Not Available	703	Open in IMG/M
3300011120\|Ga0150983_11059370	Not Available	766	Open in IMG/M
3300011120\|Ga0150983_11305662	Not Available	601	Open in IMG/M
3300011120\|Ga0150983_11583159	Not Available	568	Open in IMG/M
3300011120\|Ga0150983_12484710	Not Available	633	Open in IMG/M
3300011120\|Ga0150983_12597595	Not Available	710	Open in IMG/M
3300011120\|Ga0150983_13296022	Not Available	704	Open in IMG/M
3300011120\|Ga0150983_13718119	Not Available	651	Open in IMG/M
3300011120\|Ga0150983_13772188	Not Available	890	Open in IMG/M
3300012203\|Ga0137399_10733450	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300012205\|Ga0137362_10232671	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300012359\|Ga0137385_11466512	Not Available	546	Open in IMG/M
3300012361\|Ga0137360_10904256	Not Available	761	Open in IMG/M
3300012362\|Ga0137361_10081246	All Organisms → cellular organisms → Bacteria	2771	Open in IMG/M
3300012362\|Ga0137361_10328084	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300012582\|Ga0137358_10065031	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300012582\|Ga0137358_10788381	Not Available	632	Open in IMG/M
3300012923\|Ga0137359_10260324	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300012923\|Ga0137359_10391294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1233	Open in IMG/M
3300020579\|Ga0210407_10725779	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300020580\|Ga0210403_10344374	Not Available	1220	Open in IMG/M
3300020583\|Ga0210401_10818993	Not Available	791	Open in IMG/M
3300021168\|Ga0210406_10376792	Not Available	1141	Open in IMG/M
3300021170\|Ga0210400_10875533	Not Available	734	Open in IMG/M
3300021171\|Ga0210405_10427061	Not Available	1043	Open in IMG/M
3300021178\|Ga0210408_10816637	Not Available	729	Open in IMG/M
3300021181\|Ga0210388_11328101	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	606	Open in IMG/M
3300021361\|Ga0213872_10062403	Not Available	1684	Open in IMG/M
3300021374\|Ga0213881_10063585	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	1572	Open in IMG/M
3300021377\|Ga0213874_10024701	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	1688	Open in IMG/M
3300021401\|Ga0210393_10326801	Not Available	1247	Open in IMG/M
3300021402\|Ga0210385_10075089	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	2310	Open in IMG/M
3300021406\|Ga0210386_10045578	All Organisms → cellular organisms → Bacteria	3471	Open in IMG/M
3300021474\|Ga0210390_11668453	Not Available	500	Open in IMG/M
3300021478\|Ga0210402_11209081	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium	683	Open in IMG/M
3300021479\|Ga0210410_10160704	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2005	Open in IMG/M
3300021479\|Ga0210410_11474867	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	573	Open in IMG/M
3300021559\|Ga0210409_10064710	All Organisms → cellular organisms → Bacteria	3409	Open in IMG/M
3300022724\|Ga0242665_10204980	Not Available	652	Open in IMG/M
3300024288\|Ga0179589_10130283	Not Available	1057	Open in IMG/M
3300025898\|Ga0207692_11129926	Not Available	519	Open in IMG/M
3300025910\|Ga0207684_10292736	Not Available	1404	Open in IMG/M
3300025910\|Ga0207684_11557582	Not Available	536	Open in IMG/M
3300025915\|Ga0207693_10174115	Not Available	1694	Open in IMG/M
3300027667\|Ga0209009_1015524	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300027684\|Ga0209626_1112590	Not Available	709	Open in IMG/M
3300027684\|Ga0209626_1184513	Not Available	553	Open in IMG/M
3300027812\|Ga0209656_10003934	All Organisms → cellular organisms → Bacteria	9594	Open in IMG/M
3300027824\|Ga0209040_10274501	Not Available	833	Open in IMG/M
3300027908\|Ga0209006_10107259	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300027908\|Ga0209006_10206934	Not Available	1702	Open in IMG/M
3300028047\|Ga0209526_10084319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2237	Open in IMG/M
3300028047\|Ga0209526_10233328	Not Available	1264	Open in IMG/M
3300028379\|Ga0268266_10828736	Not Available	894	Open in IMG/M
3300028759\|Ga0302224_10265663	Not Available	686	Open in IMG/M
3300028780\|Ga0302225_10342086	Not Available	706	Open in IMG/M
3300028798\|Ga0302222_10347805	Not Available	578	Open in IMG/M
3300029999\|Ga0311339_11435580	Not Available	618	Open in IMG/M
3300030007\|Ga0311338_10902896	Not Available	868	Open in IMG/M
3300030503\|Ga0311370_10397174	Not Available	1735	Open in IMG/M
3300030531\|Ga0210274_1560009	Not Available	541	Open in IMG/M
3300030580\|Ga0311355_10479688	Not Available	1198	Open in IMG/M
3300031015\|Ga0138298_1551564	Not Available	733	Open in IMG/M
3300031236\|Ga0302324_101101835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1068	Open in IMG/M
3300031236\|Ga0302324_103438645	Not Available	515	Open in IMG/M
3300032160\|Ga0311301_10282686	Not Available	2683	Open in IMG/M
3300032180\|Ga0307471_103605540	Not Available	548	Open in IMG/M
3300032756\|Ga0315742_11852007	Not Available	665	Open in IMG/M
3300032756\|Ga0315742_11904541	Not Available	658	Open in IMG/M
3300032756\|Ga0315742_12082475	Not Available	635	Open in IMG/M
3300032756\|Ga0315742_12609237	Not Available	578	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.78%
Host-Associated	Host-Associated	5.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.83%
Aquatic	Environmental → Aquatic	6.96%
Plants	Host-Associated → Plants	5.22%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.13%
Peat	Environmental → Terrestrial → Peat	7.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.35%
Freshwater	Environmental → Aquatic → Freshwater	3.48%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.74%
Sediment	Environmental → Aquatic → Sediment	1.74%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	41.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.83%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.61%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.74%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	31.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.43%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.61%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.74%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.87%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	26.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.43%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.57%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.48%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.61%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.61%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.74%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.87%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.87%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.87%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001171	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002669	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF128 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002675	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF122 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002677	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF124 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004117	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF222 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004118	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030531	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO038SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_127662483	3300000789	Soil	MTPIVAKVLAVDRQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWKID*
JGI12685J13342_1015131	3300001171	Forest Soil	MTPILAKVLAVENQAXQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
JGI12635J15846_104200392	3300001593	Forest Soil	MTPILAKVLAVDKQGDHYLVIIQIMLRKYRGSFNTLTFGDKKPFIGSYHNGRLDLVYYIDPGLKTGGPFPLWRID*
JGIcombinedJ26739_1004958022	3300002245	Forest Soil	MTPIVAKVLAIGKQDDKYLVIIQIMLRRYRGSFNTFTFGEKKPSVGSYRNGRLDLVYYTDPDLKTGGPFPLWRID*
JGIcombinedJ26739_1005573202	3300002245	Forest Soil	MFSLILVICLRRTQKLPQMTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPLIGSCHNGRLDLVYCVDPCLRTGGPFPLWRID*
JGIcombinedJ26739_1017564531	3300002245	Forest Soil	MTPILAKVLTVDRQGDQYLVVIEIMLRNFRGSFNTLTFGEKPPSKGTYRNGRLDLVYYVDPCLTTGGTFPLWRLNGESEFHAARRR*
Ga0005479J37267_1071622	3300002669	Forest Soil	MTAILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFP
Ga0005473J37261_1035253	3300002675	Forest Soil	MTPILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0005475J37263_1191022	3300002677	Forest Soil	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKKGGPFPLW
Ga0058900_10006071	3300004099	Forest Soil	MTPILAKVLAVENLADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0058893_13397343	3300004117	Forest Soil	MTAILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
Ga0058886_13646291	3300004118	Forest Soil	MTPIHAKVVAVDKKDDKYLVIIQIMLRKYRGSFNTLTFGEKKPSVGSYRNGRLDLVYYMDPGLKTGGSFPLWRID*
Ga0058901_10215993	3300004120	Forest Soil	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
Ga0058901_12681481	3300004120	Forest Soil	MTPIHAKVVAVDKKDDKYLVIIQIMLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPGLKTGGPFPLWRID*
Ga0058899_101122521	3300004631	Forest Soil	MTPILAKVLAVDKRDDRYLVIIQIMLRKYRGSFNTLTFGDKKPSIGSYHNGRLDLVYYIDPGLKTGGPFPLWRID*
Ga0058899_101492431	3300004631	Forest Soil	MTAILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKA
Ga0058899_102157411	3300004631	Forest Soil	MTPILAKVLAVENLADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKA
Ga0062388_1013988281	3300004635	Bog Forest Soil	MTPILAKVLAIDKQGDRYLVVIQIQLRKYRGSFNTLTFGEKKPFVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID*
Ga0070713_1010807711	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTPIVAKVLAVDRQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRID*
Ga0070710_106653832	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTPIVAKVLAIDKKGDKYLVIIQITLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCIDPCLKTGGPFPLWRID*
Ga0070710_110700872	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIH*
Ga0070663_1021263821	3300005455	Corn Rhizosphere	KLVSTILPHMKAILAKVLAVDQQGDKYLVVIQILLRKYRGSFNTLTFGEAKPFIGSYHNGRLDLVYSKDPGLKTGTPFPLWRID*
Ga0070707_1002042815	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTAIPAKVLAIDKQGDQYNVIVRIALAKYRGSFNTLAFGENKPSTGFCHNGQLDLFYYRDPG
Ga0070698_1018528631	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTPILAKVLAVDGQGDQYNVIVQIEPPKYRGAFNTLAFGENKPSIGFCHEGRLDLVYYKDPGFK
Ga0070699_10000566814	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0070699_1003626982	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTPILAKVLAVDNQGDQYNVIVRIELANYRGSFNTLILGENKPSIGFCHEGRLDLVYYKDPGLKAGQPFPLWTIQ*
Ga0070665_1003274773	3300005548	Switchgrass Rhizosphere	VTPIHAKVLAVDKHDDRYLVIIQIMLRRYRGSFNTLTFGEKKPSVGSYRDGRLDLVYYKDPCLKTGGPFPLWRID*
Ga0070762_106356992	3300005602	Soil	MTPILAKVLAIDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID*
Ga0070762_109363422	3300005602	Soil	MTPILAKVLAVDKQGDKYLVIIQILLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCIDPCLKAGGPFPLWRIDAQRPKEAT
Ga0070766_108559941	3300005921	Soil	MTPILAKVLAVDKQGDKYLVIIQILLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCIDPCLKAGGPFPLWRIDAQRPKEATNHRYHK*
Ga0070717_120982071	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTPILAKVLAVDNQGDQYNVIVRIELANYRGSFNTLILGENKPSIGFCHEGRLDLVYYKDPGLKAGQPF
Ga0075028_1008565972	3300006050	Watersheds	MTPILANVRAVDKQGDKYLIILQIMFRKYRGAFNTLAFGETKPVIGSSHNGRFDLVYCTDPGLKNRRRISVVED*
Ga0075018_102915672	3300006172	Watersheds	PQMTPILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
Ga0070765_1003024623	3300006176	Soil	MTPILAKVLAIEKQGDRYLVIIQIMLRKYRGSFNTLTFGEKKPCVGSYHNGRLDLVYYIDPGLKTGGSFPLWRID*
Ga0070765_1007237711	3300006176	Soil	MLPMTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID*
Ga0073928_102974201	3300006893	Iron-Sulfur Acid Spring	MTPILAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPSVGSCHNGRLNLVYYIDPGLKAGGPFPLWRID
Ga0073928_105740011	3300006893	Iron-Sulfur Acid Spring	MTPILAKVLTVDRQGDQYLVVIEIMLRNFRGSFNTLTFGEKPPSKGTYRNGRLDLVYYVDPCLTTGSTFPLWRLNGESEFHAARRR*
Ga0116217_108055941	3300009700	Peatlands Soil	MTPILAKVLAVDKQGDQYLVVIQIMLRKYRGSFNTLAFGEKKPFIGSYHNGRLDLVYCMDPCLKTGGPFPLWRLD*
Ga0127503_113056922	3300010154	Soil	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID*
Ga0074045_110057022	3300010341	Bog Forest Soil	MAPIHAKVLAVDRQGDQYNVMVRIELAKYRGSFNTLAFGENKPSIGFCHEDRLDLIYYKDPGIKAGQPFPLWTIK*
Ga0074044_102346841	3300010343	Bog Forest Soil	ERPQMTPIHAKVLAVDRQGDQYNVMVRIELAKYRGSFNTLAFGEKKPSIGFCHEGRLDLIYYDDPGIKAGQPFPLWTIK*
Ga0074044_106669671	3300010343	Bog Forest Soil	ERPQMTPIHAKVLAVDRQGDQYNVMVRIELAKYRGSFNTLAFGEKKPSIGFCHEGRLDLIYYKDPGIKAGQPFPLWTIK*
Ga0126383_128224302	3300010398	Tropical Forest Soil	MTPILAKVLAVDNQGDQYNVIVRIELANYRGSFNTPIFGENKPSIGFCHEGRLDLVYYKDLALKQDNRFRSGRFSS*
Ga0126345_11823711	3300010858	Boreal Forest Soil	MTPILAKVLTVDRQGDQYLVVIEIMLRKYRGSFNTLTFGEKPPSKGTYRNGRLDLVYYVDPCLTTGNTFPLWRLNGESEFQAARRR*
Ga0105246_111826712	3300011119	Miscanthus Rhizosphere	MKAILAKVLAVDQQGDKYLVVIQILLRKYRGSFNTLTFGEAKPFIGSYHNGRLDLVYSKDPGLKTGTPFPLWRID*
Ga0150983_110593702	3300011120	Forest Soil	MLPMTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKKGGPFPLWRID*
Ga0150983_113056621	3300011120	Forest Soil	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYNDPDLKTGGPFPLWRID*
Ga0150983_115831591	3300011120	Forest Soil	MSSLILVICLRRTQKLPQMTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLRFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRIDRPIYRR*
Ga0150983_124847102	3300011120	Forest Soil	MTPILAKVLAIDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPF
Ga0150983_125975951	3300011120	Forest Soil	MFSLIFVICFPQTEKLSQMTPIIAKVLAIDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLIYCVDPGLKTGGPFPLWKID*
Ga0150983_132960221	3300011120	Forest Soil	MQPILAKVLAVDQQGDKYLVVIQILLRKYRGSFNTLTFGETKPFIGSYHNGRLDLVFSKDPGLKKGTPFPLWRID*
Ga0150983_137181191	3300011120	Forest Soil	MSCLSLSEIESVQMTPIHAKVVAVDKKDDKYLVIIQIMLRKYRGSFNTLIFGEKKPFVGSYHNGRLDLVYYMDPGLKTGGPFPLWRID*
Ga0150983_137721882	3300011120	Forest Soil	LSEIESVQMTPIHAKVVAVDKKDDKYLVIIQIMLRKYRGSFNTLTFGEKKPSVGSYRNGRLDLVYYMDPGLKTGGSFPLWRID*
Ga0137399_107334502	3300012203	Vadose Zone Soil	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLVLVYYKDPGLKAGQRFPLWTIQ*
Ga0137362_102326714	3300012205	Vadose Zone Soil	MTAILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0137385_114665121	3300012359	Vadose Zone Soil	QMTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGEKKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
Ga0137360_109042561	3300012361	Vadose Zone Soil	MTAILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYRDPGLKAGERFPLWTIQ*
Ga0137361_100812462	3300012362	Vadose Zone Soil	MTPILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSNGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ*
Ga0137361_103280843	3300012362	Vadose Zone Soil	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHKGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0137358_100650313	3300012582	Vadose Zone Soil	MTPILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSNGFCHEGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0137358_107883812	3300012582	Vadose Zone Soil	MSSLIFVICLRRTQKLPPMTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLRFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRIDRPIYRR*
Ga0137359_102603241	3300012923	Vadose Zone Soil	EGPQMTPILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSNGFCHEGRLELVYYKDPGLKAGERFPLWTIQ*
Ga0137359_103912943	3300012923	Vadose Zone Soil	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHKGRLELVYYKDPGLKAGQRFPLWTIQ*
Ga0210407_107257792	3300020579	Soil	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYNDPDLKTGGPFPLWRID
Ga0210403_103443741	3300020580	Soil	MTPILAKVLAIDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID
Ga0210401_108189932	3300020583	Soil	MTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLRFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRIDRPIYRR
Ga0210406_103767923	3300021168	Soil	MLPMTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID
Ga0210400_108755331	3300021170	Soil	MQPIVAKVLAVDQQGDKYLVVIQILLRRYRGSFNTLTFGETKPFIGSYHNGRLDLVYSKDPGLKKGTPFPLWRID
Ga0210405_104270611	3300021171	Soil	MQPILAKVLAVDQQDDKYLVVIQILLRRYRGSFNTLTFGETKPFIGSYHNGRLDLVYSKDPGLKKGTPFPLWRID
Ga0210408_108166372	3300021178	Soil	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIQ
Ga0210388_113281011	3300021181	Soil	LPMTPILAKDLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKKGGPFPLWRID
Ga0213872_100624031	3300021361	Rhizosphere	MTAIPAKVLAIDKQGDRYNVIVRIGLAKYRGSFNTLAFGENKPSIGFCHEGRLELVYYKDPGLKAGQPFPLWTV
Ga0213881_100635853	3300021374	Exposed Rock	VELVSKKLTKVLLFLQMTPILAKVLAVDKQNDKYLVVIQIMLRRYRGSFNTLTFGENKPSVGSYHNGRLDLVYYTDPGLKR
Ga0213874_100247013	3300021377	Plant Roots	VELVSKKLTKVLLFLQMTPILAKVLAVDKQNDKYLVVIQIMLRRYRGSFNTLTFGENKPSVGSYHNGRLDLVYYTDPGLKRGGTFPLWRMD
Ga0210393_103268011	3300021401	Soil	MLPMTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKKGGPFPLWRID
Ga0210385_100750894	3300021402	Soil	MTPILAKVLAIDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLW
Ga0210386_100455785	3300021406	Soil	VLPMTPILAKVLAIDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID
Ga0210390_116684531	3300021474	Soil	MQPILAKVLAVDQRDDKYLVVIQILLRRYRGSFNTLTFGETKPFIGSYHNGRLDLVYSKDPGLKKGTPFPLWRIE
Ga0210402_112090812	3300021478	Soil	MLPMTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKKGGPFPLWKID
Ga0210410_101607042	3300021479	Soil	MTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPLIGSCHNGRLDLVYCVDPCLRTGGPFPLWRID
Ga0210410_114748672	3300021479	Soil	ATLKRMFPLIFVICFPQTEKLSQMTPIIAKVLAIDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLIYCVDPGLKTGGPFPLWKID
Ga0210409_100647104	3300021559	Soil	MTAILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ
Ga0242665_102049802	3300022724	Soil	MTAILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ
Ga0179589_101302833	3300024288	Vadose Zone Soil	MKVILAKVLAVDQQGDKYLVVIQILLRKYRGSFNTLMFGEAKPFIGSYHNGRLDLVYSKDPGLKTGTPFPLWRID
Ga0207692_111299261	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGQRFPLWTIH
Ga0207684_102927361	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LRAATRSTTLSRLRREVGLEMTPILAKVLTVDRQGDRYNVIVRIELPKYRGSFNTLAFGENKPSIGSCHEGRLDLVYYKDPGLEPGQPFPLWTIQ
Ga0207684_115575821	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	EKPQMTPILAKVLAVENQADQYKVIVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYCKDPGLKAGQRFPLWTIQ
Ga0207693_101741151	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SSLIFVICLRRTQKLPPMTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRID
Ga0209009_10155243	3300027667	Forest Soil	MTPILAKVLAVDKRDDRYLVIIQIMLRKYRGSFNTLTFGDKKPSIGSYHNGRLDLVYYIDPGLKTGGPFPLWRID
Ga0209626_11125901	3300027684	Forest Soil	MTPILAKVLTVDRQGDQYLVVIEIMLRNFRGSFNTLTFGEKPPSKGTYRNGRLDLVYYVDPCLTTGGTFPLWRLNGESEFHAARRR
Ga0209626_11845131	3300027684	Forest Soil	MTPILAKVLAVDKRDDRYLVIIQIMLRKYRGSFNTLTFGDKKPFIGSYHNGRLDLVYYIDPGLKTGGPFPLWRID
Ga0209656_1000393410	3300027812	Bog Forest Soil	MTPIHAKVLAVDRQGDQYNVMVRIELAKYRGSFNTLAFGEKKPSIGFCHEGRLDLIYYDDPGIKAGQPFPLWTIK
Ga0209040_102745012	3300027824	Bog Forest Soil	MTPIPAKVLAVDKQGDQYNVIVRIGLAKYRGLFNTLAFGENKPFTGSCHNGQLDLFYYRDPG
Ga0209006_101072593	3300027908	Forest Soil	MTPILAKVLAVDKRDDKYLVIIQIMLRKYRGSFNTLTFGEKKPFIGSYHNGRLDLVYYVDPGLKTGGPFPLWRID
Ga0209006_102069341	3300027908	Forest Soil	MTPILAKVLAVDKQGDKYLVIIQIMLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPCLKMGSPFPLWRID
Ga0209526_100843193	3300028047	Forest Soil	MFSLILVICLRRTQKLPQMTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCVDPCLRTGGPFPLWRID
Ga0209526_102333282	3300028047	Forest Soil	MTPIVAKVLAIGKQDDKYLVIIQIMLRRYRGSFNTFTFGEKKPSVGSYRNGRLDLVYYTDPDLKTGKPFPLWRID
Ga0268266_108287362	3300028379	Switchgrass Rhizosphere	VTPIHAKVLAVDKHDDRYLVIIQIMLRRYRGSFNTLTFGEKKPSVGSYRDGRLDLVYYKDPCLKTGGPFPLWRI
Ga0302224_102656631	3300028759	Palsa	MTPIVAKVLAVDKKDDKYLVIIQIMLRKYRGSFNTLTFGEKKPFIGSYHNGRLDLVYYRDPGLKTGGPFPLWRLD
Ga0302225_103420863	3300028780	Palsa	MTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHKGRLDLVYYVDPGLKTGGPFPL
Ga0302222_103478051	3300028798	Palsa	MTPIVAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLTFGEKKPFIGSCHKGRLDLVYYVDPGLKTGGPFPLWRID
Ga0311339_114355801	3300029999	Palsa	VGAVRKQGDRYLVIIRINLRRYRGSFNTLVFGETKPFIGSYHNGRLDLVYDTDPGLKTGGTFPLWRVE
Ga0311338_109028961	3300030007	Palsa	MTPILAKVGAVHKEGDKYLVIIRIMLRRYRGSFNTLAFGETKPLIGSYHNGRLDLVYYSDPGLKIGHAFPLWRID
Ga0311370_103971741	3300030503	Palsa	MTPILAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLIFGEKKPFIGSCHNGRLDLVYCVDPCLKAGGPFPLWRIDAQRRKEGTNYRYHK
Ga0210274_15600092	3300030531	Soil	MTPIHAKVVAVDKKDDKYLVIIQIMLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYMDPGLKTGGPFPLWRID
Ga0311355_104796883	3300030580	Palsa	MTPIVAKVLAVDKQGDKYLVIIQIMLRKYRGSFNTLTFGEKKPFIGSYHNGRLDLVYYRDPGLKTGGPFPLWRLD
Ga0138298_15515641	3300031015	Soil	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRID
Ga0302324_1011018352	3300031236	Palsa	MTPILAKVLAVDKQGDKYLVIIQIMLRKFRGSFNTLIFGEKKPFIGSCHNGRLDLVYCVDPCLKAGGPFPLWRIDAQRPKEGTNYRYHK
Ga0302324_1034386451	3300031236	Palsa	MTPILAKVGAVRKQGDRYLVIIRINLRRYRGSFNTLVFGETKPFIGSYHNGRLDLVYDTDPGLKTGGTFPLWRVE
Ga0311301_102826863	3300032160	Peatlands Soil	VLQMTPIRAKVLAVDKQGDQYLVVIQITLRRYRGSFNTLTFGEKKPFIGSYHNGRLDLVYCMDPCLKAGGPFPLWRID
Ga0307471_1036055402	3300032180	Hardwood Forest Soil	QMTPILAKVLAVENQADQYRVFVRIGLAKYRGSFNTLTFGENKPSIGFCHEGRLELVYYKDPGLKAGERFPLWTIQ
Ga0315742_118520071	3300032756	Forest Soil	MTPILAKVGAVHKQGDKYLVIIRIMLRRYRGSFNTLAFGQTKPLLGSYHNGRLDLIYYADPGLKIGHPFPLWRID
Ga0315742_119045411	3300032756	Forest Soil	RLAKRMSCLSLSEIESVQMTPIHAKVVAVDKKDDKYLVIIQIMLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYMDPGLKTGGPFPLWRID
Ga0315742_120824751	3300032756	Forest Soil	MTPILAKVLAVDKQGDRYLVVIQILLRKYRGSFNTLTFGEKKPSVGSYHNGRLDLVYYIDPDLKTGGPFPLWRI
Ga0315742_126092371	3300032756	Forest Soil	MQPILAKVLAVDQQGDKYLVVIQILLRKYRGSFNTLTFGETKPFIGSYHNGRLDLVFSKDPGLKKGTPFPLWRID

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080456

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences