Metagenome Family F080559

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080559
Family Type	Metagenome
Number of Sequences	115
Average Sequence Length	44 residues
Representative Sequence	GSGVAVQFREMNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS
Number of Associated Samples	95
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.87 %
% of genes near scaffold ends (potentially truncated)	97.39 %
% of genes from short scaffolds (< 2000 bps)	89.57 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.087 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.391 % of family members)
Environment Ontology (ENVO)	Unclassified (29.565 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.043 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.94% β-sheet: 0.00% Coil/Unstructured: 43.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01545	Cation_efflux	32.17
PF01339	CheB_methylest	31.30
PF07238	PilZ	5.22
PF05649	Peptidase_M13_N	1.74
PF01584	CheW	1.74
PF01435	Peptidase_M48	1.74
PF00015	MCPsignal	1.74
PF02518	HATPase_c	1.74
PF00072	Response_reg	0.87
PF00248	Aldo_ket_red	0.87
PF13426	PAS_9	0.87
PF00920	ILVD_EDD	0.87
PF02779	Transket_pyr	0.87
PF04679	DNA_ligase_A_C	0.87
PF01627	Hpt	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	62.61
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	32.17
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	32.17
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	32.17
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	3.48
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.74
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	1.74
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.09 %
Unclassified	root	N/A	13.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.09 %
Unclassified	root	N/A	13.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.09 %
Unclassified	root	N/A	13.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	46.96 %
Unclassified	root	N/A	13.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	6.09 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.48 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.87 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.09 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.87 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	1.74 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	1.74 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.87 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.87 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	1.74 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.74 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.87 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.87 %
Schlesneria	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.74 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.74 %
Schlesneria paludicola	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	0.87 %
unclassified Pedosphaera	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera	0.87 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.48 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1.74 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1.74 %
Pedosphaera sp. Tous-C6FEB	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp. Tous-C6FEB	0.87 %
Schlesneria paludicola	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	0.87 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573001\|GZR05M101BWL9N	Not Available	514	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_103998944	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300001174\|JGI12679J13547_1000960	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300001546\|JGI12659J15293_10020754	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300002245\|JGIcombinedJ26739_100497466	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp. Tous-C6FEB	1096	Open in IMG/M
3300004152\|Ga0062386_101250187	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300005445\|Ga0070708_100175323	All Organisms → cellular organisms → Bacteria	2003	Open in IMG/M
3300005568\|Ga0066703_10213451	Not Available	1173	Open in IMG/M
3300005586\|Ga0066691_10727021	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300005764\|Ga0066903_100722535	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1762	Open in IMG/M
3300006052\|Ga0075029_100805165	Not Available	640	Open in IMG/M
3300006052\|Ga0075029_101334755	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300006102\|Ga0075015_100358239	All Organisms → cellular organisms → Bacteria → Acidobacteria	815	Open in IMG/M
3300006162\|Ga0075030_100388400	All Organisms → cellular organisms → Bacteria → Acidobacteria	1112	Open in IMG/M
3300006163\|Ga0070715_10337312	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300006893\|Ga0073928_10122332	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300006893\|Ga0073928_10726446	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300006903\|Ga0075426_10706426	All Organisms → cellular organisms → Bacteria → Acidobacteria	756	Open in IMG/M
3300009524\|Ga0116225_1019813	All Organisms → cellular organisms → Bacteria	3466	Open in IMG/M
3300009525\|Ga0116220_10255428	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	766	Open in IMG/M
3300010048\|Ga0126373_10237877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	1785	Open in IMG/M
3300010048\|Ga0126373_12100180	Not Available	627	Open in IMG/M
3300010361\|Ga0126378_10184975	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	2152	Open in IMG/M
3300010366\|Ga0126379_10161906	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Schlesneria → Schlesneria paludicola	2102	Open in IMG/M
3300010376\|Ga0126381_103112101	All Organisms → cellular organisms → Bacteria → Acidobacteria	657	Open in IMG/M
3300010376\|Ga0126381_104605188	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300010937\|Ga0137776_1734337	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300011271\|Ga0137393_11666529	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300012203\|Ga0137399_10743787	Not Available	826	Open in IMG/M
3300012210\|Ga0137378_11327095	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012357\|Ga0137384_10421378	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300012357\|Ga0137384_11328441	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012363\|Ga0137390_11338642	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300012469\|Ga0150984_110510892	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300012683\|Ga0137398_11240471	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300012960\|Ga0164301_10460434	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300012960\|Ga0164301_11723777	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300014168\|Ga0181534_10464585	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300015373\|Ga0132257_104087555	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300015374\|Ga0132255_100181096	All Organisms → cellular organisms → Bacteria	2967	Open in IMG/M
3300017822\|Ga0187802_10322500	All Organisms → cellular organisms → Bacteria → Acidobacteria	604	Open in IMG/M
3300017959\|Ga0187779_10823084	Not Available	635	Open in IMG/M
3300017961\|Ga0187778_10047373	All Organisms → cellular organisms → Bacteria → Acidobacteria	2624	Open in IMG/M
3300017972\|Ga0187781_11086987	Not Available	586	Open in IMG/M
3300017975\|Ga0187782_10628609	All Organisms → cellular organisms → Bacteria → Acidobacteria	826	Open in IMG/M
3300018019\|Ga0187874_10149771	All Organisms → cellular organisms → Bacteria → Acidobacteria	987	Open in IMG/M
3300018043\|Ga0187887_10978555	Not Available	500	Open in IMG/M
3300018085\|Ga0187772_10894359	Not Available	645	Open in IMG/M
3300018086\|Ga0187769_10595794	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	835	Open in IMG/M
3300018090\|Ga0187770_10456531	All Organisms → cellular organisms → Bacteria → Acidobacteria	1008	Open in IMG/M
3300018090\|Ga0187770_11472368	Not Available	554	Open in IMG/M
3300020581\|Ga0210399_10272173	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1413	Open in IMG/M
3300020581\|Ga0210399_10396891	All Organisms → cellular organisms → Bacteria	1150	Open in IMG/M
3300020583\|Ga0210401_10850119	All Organisms → cellular organisms → Bacteria → Acidobacteria	772	Open in IMG/M
3300021088\|Ga0210404_10609093	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300021088\|Ga0210404_10785314	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300021407\|Ga0210383_11170965	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300021420\|Ga0210394_11739126	Not Available	521	Open in IMG/M
3300021433\|Ga0210391_10257854	All Organisms → cellular organisms → Bacteria → Acidobacteria	1369	Open in IMG/M
3300021433\|Ga0210391_10765362	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300021433\|Ga0210391_10986079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300021433\|Ga0210391_11495474	Not Available	518	Open in IMG/M
3300021476\|Ga0187846_10198858	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300021477\|Ga0210398_10941929	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300021478\|Ga0210402_10584603	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300021478\|Ga0210402_11962419	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300021478\|Ga0210402_12030701	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300021479\|Ga0210410_11534034	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300021560\|Ga0126371_12008871	All Organisms → cellular organisms → Bacteria → Acidobacteria	695	Open in IMG/M
3300022557\|Ga0212123_10449072	All Organisms → cellular organisms → Bacteria → Acidobacteria	850	Open in IMG/M
3300022731\|Ga0224563_1008026	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300023255\|Ga0224547_1011606	All Organisms → cellular organisms → Bacteria → Acidobacteria	1114	Open in IMG/M
3300025320\|Ga0209171_10632164	Not Available	511	Open in IMG/M
3300025854\|Ga0209176_10118373	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300025906\|Ga0207699_11219704	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300025912\|Ga0207707_10994498	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300025928\|Ga0207700_10952765	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300025928\|Ga0207700_11751073	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300025939\|Ga0207665_10677700	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300025939\|Ga0207665_10778591	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300026890\|Ga0207781_1015507	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300026941\|Ga0207741_1021228	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300027545\|Ga0209008_1140691	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027567\|Ga0209115_1056687	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300027633\|Ga0208988_1088475	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300027842\|Ga0209580_10096801	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300027842\|Ga0209580_10208343	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300027842\|Ga0209580_10572225	All Organisms → cellular organisms → Bacteria → Acidobacteria	561	Open in IMG/M
3300027905\|Ga0209415_10173300	All Organisms → cellular organisms → Bacteria → Acidobacteria	2104	Open in IMG/M
3300027908\|Ga0209006_10616176	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300028773\|Ga0302234_10382168	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300028798\|Ga0302222_10042876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1842	Open in IMG/M
3300031028\|Ga0302180_10124835	All Organisms → cellular organisms → Bacteria → Acidobacteria	1450	Open in IMG/M
3300031028\|Ga0302180_10397440	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031446\|Ga0170820_13492636	Not Available	766	Open in IMG/M
3300031573\|Ga0310915_11111952	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300031668\|Ga0318542_10400624	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300031679\|Ga0318561_10370972	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785	Open in IMG/M
3300031715\|Ga0307476_10721729	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300031753\|Ga0307477_10392479	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300031823\|Ga0307478_11397169	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300031947\|Ga0310909_10512658	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300031962\|Ga0307479_10056261	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3789	Open in IMG/M
3300032001\|Ga0306922_10519347	Not Available	1268	Open in IMG/M
3300032180\|Ga0307471_100822327	All Organisms → cellular organisms → Bacteria → Acidobacteria	1096	Open in IMG/M
3300032261\|Ga0306920_104053927	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300032770\|Ga0335085_11517676	All Organisms → cellular organisms → Bacteria → Acidobacteria	697	Open in IMG/M
3300032783\|Ga0335079_10034442	All Organisms → cellular organisms → Bacteria	5814	Open in IMG/M
3300032828\|Ga0335080_11406912	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300033004\|Ga0335084_10082754	All Organisms → cellular organisms → Bacteria → Acidobacteria	3329	Open in IMG/M
3300033004\|Ga0335084_10095710	All Organisms → cellular organisms → Bacteria → Acidobacteria	3083	Open in IMG/M
3300033405\|Ga0326727_11190951	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300033433\|Ga0326726_11278040	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300033545\|Ga0316214_1064011	Not Available	539	Open in IMG/M
3300033887\|Ga0334790_161501	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.65%
Host-Associated	Host-Associated	4.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.48%
Aquatic	Environmental → Aquatic	12.17%
Plants	Host-Associated → Plants	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.65%
Peat	Environmental → Terrestrial → Peat	6.96%
Freshwater	Environmental → Aquatic → Freshwater	4.35%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.35%
Sediment	Environmental → Aquatic → Sediment	3.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.74%
Cave	Environmental → Terrestrial → Cave	0.87%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.70%
Loam	Environmental → Terrestrial → Soil → Loam	15.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.30%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.35%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.74%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.48%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.87%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.87%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.39%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.35%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.48%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.48%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.61%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.74%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	1.74%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.87%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.87%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.87%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.87%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001174	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300023255	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P2 10-14	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025854	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026890	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 51 (SPAdes)	Environmental	Open in IMG/M
3300026941	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 39 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033545	Spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE4	Host-Associated	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FD2_04303910	2189573001	Grass Soil	VQFRELNREARERMFRILEFVQKTTSFYNNRYLDSLTKN
INPhiseqgaiiFebDRAFT_1039989442	3300000364	Soil	PGSGAAVQFRELNREARDRMFRILEFVQKTTTFYNNRYLDSLTKN*
JGI12679J13547_10009603	3300001174	Forest Soil	EGVVARLDPGSGLAIQFREVNREGRDRMLKILEFVQKTTTFYNNRYLNSLTKN*
JGI12659J15293_100207541	3300001546	Forest Soil	QFREMNREGRERMFRILEFVQKTTSFYNKRYLDSLTKT*
JGIcombinedJ26739_1004974661	3300002245	Forest Soil	FREMNREGRDRMLKILEFVQKTTTFYNNRYLNSLTKN*
Ga0062386_1012501871	3300004152	Bog Forest Soil	RLDPGSGVAVQFREMNRDGRDRMFRILEFVQKTSAYYNNRYFENLLKR*
Ga0070708_1001753231	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AEGVVARIDPGTGMAVQFQEMNREARAQMFKILEFVQKTTAFYNNRYFENLLKR*
Ga0066703_102134511	3300005568	Soil	GVVARLDPGTGVAVQFREMNREGRERMFKILEFVQKTTTFFNNRYLDSLTKTKS*
Ga0066691_107270211	3300005586	Soil	DGVVARIDPGSGVAVQFKEMNREGREKMFKVIEFVQKATAFYNNRYFENLLKR*
Ga0066903_1007225351	3300005764	Tropical Forest Soil	QFREMNREARDRMFRILEFVQKANSFYNNKYLDSLTRN*
Ga0075029_1008051652	3300006052	Watersheds	AVQFREMNRDGRDRMFRILEFVQKTSAFYNNRYFENLLKR*
Ga0075029_1013347552	3300006052	Watersheds	VVARLDPGSGVAVQFREMNREGRERMFKILEFVQKTTAFYNSRYLDTLTKS*
Ga0075015_1003582391	3300006102	Watersheds	VNREGRERMLKILEFVQKSSAFHNNRYLETLLKR*
Ga0075030_1003884002	3300006162	Watersheds	GSGVAVQFREMNREARERMFRILEFIQKTTTFYNNRYLDSLTKN*
Ga0070715_103373121	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	ARLDPGSGVAVQFREMNREGRERMFRILEFVQKTTTFFNNRYIDSLKKS*
Ga0073928_101223324	3300006893	Iron-Sulfur Acid Spring	VVARLDPGSGVAVQFRELNREARDRMLKILEFVQKTTTFYNNRYLNSLTKT*
Ga0073928_107264462	3300006893	Iron-Sulfur Acid Spring	DPGVGVAVQFKETNREGREKMLKILEYVQRTTTFYNNRYFEGLLKR*
Ga0075426_107064261	3300006903	Populus Rhizosphere	PGSGVAVQFRELNREARERMFRILEFVQKTTTYYNNRYLDTLAKN*
Ga0116225_10198133	3300009524	Peatlands Soil	VARLDPGSGIAVQFREMNREGRERMFRILEFVQKTTTFYNNRYLDSLTKG*
Ga0116220_102554282	3300009525	Peatlands Soil	VNREGRERMFKILEFVQKATAFYNNRYFENLLKR*
Ga0126373_102378773	3300010048	Tropical Forest Soil	AGVAVQFREMNREGRERLFKILEFVQKTTADYNNRYLNSLTKS*
Ga0126373_121001802	3300010048	Tropical Forest Soil	MVARIDPGTGIAVQFQEMNREARAKMFKILEFVQKTTTYYNNRYFENLLKR*
Ga0126378_101849751	3300010361	Tropical Forest Soil	VVMRLDPGSGVAVQFHELNREARERMFRIIEFVQKTTTFYNKRYLDSLARN*
Ga0126379_101619061	3300010366	Tropical Forest Soil	LDPGTGVAVQFKEMNREARERMFKILEFVQKTTTFYNNRYLSSLTKS*
Ga0126381_1031121011	3300010376	Tropical Forest Soil	AVQFHELNREARERMFRIIEFVQKTTTFYNKRYLDSLARN*
Ga0126381_1046051881	3300010376	Tropical Forest Soil	LDPGAGVAVQFREMNREARERMFKILEFVQKTTTYYNNRYLNSLTKS*
Ga0137776_17343372	3300010937	Sediment	LDPGAGVAVQFREMNREARERMFKVLEFVQKTTTYYNNRYLNSLTKN*
Ga0137393_116665291	3300011271	Vadose Zone Soil	IDPGSGIAVQFKEPNREGRETLLKILEHVQKSTAFYNNRYFENLLKR*
Ga0137399_107437871	3300012203	Vadose Zone Soil	YVARMDPGSGIAVQFKELNREAKEKMGRILEHVQKTNTFYNNRYFENLVKR*
Ga0137378_113270951	3300012210	Vadose Zone Soil	EMNREGRERMFKIIEFVQKTTTYFNNRYIDSLTKS*
Ga0137384_104213782	3300012357	Vadose Zone Soil	DRLDPGSGIAVQFQERNREGRERMFRIIEFVQKTTTFFNNRYIDSLTKS*
Ga0137384_113284412	3300012357	Vadose Zone Soil	GIAVQFREMNREGRETMLKILEFVQKTTTFYNNRYLNSLSKS*
Ga0137390_113386421	3300012363	Vadose Zone Soil	GSGIAVQFKELNREAKEKMYRILEHVQKTNTFYNNRYFENLIKR*
Ga0150984_1105108922	3300012469	Avena Fatua Rhizosphere	MNREARERMFRILEFVQKATSFYNNRYLDSLTKN*
Ga0137398_112404712	3300012683	Vadose Zone Soil	FREMNREGRDRMFKILEFVQKTTTFYNNRYLDSLTKT*
Ga0164301_104604343	3300012960	Soil	DPGSGLAVQFPELNRDARDRMFRIIEFVQKSTSFYNKRYLDSLAKS*
Ga0164301_117237771	3300012960	Soil	GVAIQFREMNREGRERMFRILEFVQKTTTFYNNRYLDSLSKS*
Ga0181534_104645852	3300014168	Bog	FREMNREGRERMFRILEFVQKTTSFYNKRYLDSLSKT*
Ga0132257_1040875551	3300015373	Arabidopsis Rhizosphere	FREMNREGRERMFRILEFVQKTTTFFNNRYIDSLKKS*
Ga0132255_1001810965	3300015374	Arabidopsis Rhizosphere	EMNREARDRMFRILEYVQKTTTFYNNRYLDSLTKN*
Ga0187802_103225001	3300017822	Freshwater Sediment	RLDPGSGLAIQFREMNREGRERMLKVLEFVQKTTTFYNNRYLNSLTKS
Ga0187779_108230841	3300017959	Tropical Peatland	GSGVAVQFHELNREARERMFRILEFVQKTTSFYNKRYLDSLARN
Ga0187778_100473731	3300017961	Tropical Peatland	GSGVAVQFREVNREGRERMFKILEFVQKATAYYNNRYFENLLKR
Ga0187781_110869872	3300017972	Tropical Peatland	FAEGVVMRLDPGSGVAVQFHELNREARERMFRIIEFVQKTTSFYNKRYLDSLARN
Ga0187782_106286092	3300017975	Tropical Peatland	VVARLEPGSGVAVQFKEVNRDGRERMFKVLEFVQKTTAYYNSRYFENLLKR
Ga0187874_101497712	3300018019	Peatland	GSGVAVQFREMNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS
Ga0187887_109785552	3300018043	Peatland	GVGVAVQFKETNREGREKMLKILEYVQKTTTFYNNRYFEGLLKR
Ga0187772_108943592	3300018085	Tropical Peatland	VQFREVTREGRERMFKILEYVQKTTAYYNSRYFESLLKR
Ga0187769_105957942	3300018086	Tropical Peatland	VAVQFREVNREGRERMFKILEFVQKATAYYNNRYFENLLKQ
Ga0187770_104565312	3300018090	Tropical Peatland	VLRLDPGSGVAVQFREVNREGREKMLRILEVVQKTNAYYNNRYFENILKR
Ga0187770_114723681	3300018090	Tropical Peatland	FREVTREGRERMFKILEYVQKTTAYYNSRYFESLLKR
Ga0210399_102721731	3300020581	Soil	FKELNREAKEKMYRILEHVQKTNTFYNNRYFENLLKR
Ga0210399_103968912	3300020581	Soil	AIQFREMNREGRERMFKILEFVQKTTTFYNNRYLNSLTKG
Ga0210401_108501192	3300020583	Soil	DAEGYVARMDPGSGIAVQFKELNREAKERMYRILEHVQKTNTFYNNRYFENLLKR
Ga0210404_106090932	3300021088	Soil	VGVAVQFKETNREGREKMLKILEYVQKTTTFYNNRYFEGLLKK
Ga0210404_107853141	3300021088	Soil	VQFRELNREARERMFRVLEFVQKTTTFYNNRYLDSLTKN
Ga0210383_111709651	3300021407	Soil	KAEGVVARLDPGSGIAVQFREMNREARDRMFKILEFVQKTTTFYNNRYLDSLTKT
Ga0210394_117391261	3300021420	Soil	VQFKETNREGREKMLKILEYVQRTTTFYNNRYFEGLLKR
Ga0210391_102578541	3300021433	Soil	ELNREGRERMLKILEFVQKTTTFYNNRYLSSLTKT
Ga0210391_107653621	3300021433	Soil	VAVQFREVNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS
Ga0210391_109860792	3300021433	Soil	PGVGVAVQFKETNREGREKMLKILEYVQKTTTFYNNRYFEGLLKR
Ga0210391_114954741	3300021433	Soil	ARLDPGTGVAVQFKEVNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS
Ga0187846_101988581	3300021476	Biofilm	TRLDPGSGVAVQFREMNREARERMFRILEFVQKTTTFFNNRYLDSLTKS
Ga0210398_109419292	3300021477	Soil	TAEGVVARLDPGTGVAVQFREVNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS
Ga0210402_105846031	3300021478	Soil	QFREMNREGRDRMFKILEFVQKTTTFHNNRYFENLTKR
Ga0210402_119624192	3300021478	Soil	LDPGSGIAVQFREMNREGRDRMFKILEFVQKTTTFFNNRYLDSLTKS
Ga0210402_120307011	3300021478	Soil	VQFQEMNREARAQMFKILEFVQKTTAFYNNRYFENLLKR
Ga0210410_115340341	3300021479	Soil	GIAVQFKELNREAKEKMYRILEHVQKTNTFYNNRYFENLLKR
Ga0126371_120088711	3300021560	Tropical Forest Soil	GVVMRLDPGSGVAVQFHELNREARERMFRIIEFVQKTTSFYNKRYLDSLARN
Ga0212123_104490721	3300022557	Iron-Sulfur Acid Spring	DPGVGVAVQFKETNREGREKMLKILEYVQRTTTFYNNRYFEGLLKR
Ga0224563_10080261	3300022731	Soil	EGVVARIDPGVGVAVQFKETNREGREKMLKILEYVQRTTTFYNNRYFEGLLKR
Ga0224547_10116061	3300023255	Soil	AEGVVARLDPGSGLAIQFREMNREGRERMLKVLEFVQKTTTFYNNRYLNSLTKS
Ga0209171_106321642	3300025320	Iron-Sulfur Acid Spring	VGVAVQFKETNREGREKMLKILEYVQRTTTFYNNRYFEGLLKR
Ga0209176_101183731	3300025854	Arctic Peat Soil	PGTGVAVQFREVNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS
Ga0207699_112197042	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	SGVAVQFREMNREARERMFRVLEFVQKSTTYFNNRYLSSLTKS
Ga0207707_109944981	3300025912	Corn Rhizosphere	ELNREARDRMFRIIEFVQKSTSFYNKRYLDSLAKS
Ga0207700_109527651	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VVARLDPGSGVAVQFREMNREGRERMFKILEFVQKTTTFFNNRYLDSLKKS
Ga0207700_117510731	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	FREVNREGRERMFKILEFVQKSTTFYNNRYFENLTKR
Ga0207665_106777001	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	GLVMRLDPGSGLAVQFPELNREARDRMFRIIEFVQKSTSFYNKRYLDSLAKS
Ga0207665_107785911	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VVAVQFREMNREARERMFKVLEFVQKTTTFYNNRYLDSLTKS
Ga0207781_10155071	3300026890	Tropical Forest Soil	VARLDPGSGIAIQFREMNREGRERMFRILEFVQKTTTYYNNRYIDSLSKI
Ga0207741_10212282	3300026941	Tropical Forest Soil	ARLDPGSGIAIQFREMNREGRERMFRILEFVQKTTTYYNNRYIDSLSKI
Ga0209008_11406912	3300027545	Forest Soil	ARLDPGCGLAIQFREMNREGRERMLKVLEFVQKTTTFYNNRYLSSLTKS
Ga0209115_10566871	3300027567	Forest Soil	SGIAVQFREMNREGRERMFRILEFVQKTTSFYNKRYLDSLTKT
Ga0208988_10884751	3300027633	Forest Soil	ARIDPGSGIAVQFKEPNREGREKMFKILEHVQKSTAFYNNRYFENLLKR
Ga0209580_100968011	3300027842	Surface Soil	EMNREARERMFRVLEFVQKSTTYFNNRYLSSLTKS
Ga0209580_102083433	3300027842	Surface Soil	GLAVQFRELNREGRERMLKILEFVQKTTTFYNNRYLSSLTKS
Ga0209580_105722252	3300027842	Surface Soil	SGAAVQFRELNREARERMFRVLEFVQKTTTFYNNRYLDSLTNN
Ga0209415_101733004	3300027905	Peatlands Soil	FREMNREGRERMFKILEFVQKTTTFYNNRYLDSLTKT
Ga0209006_106161761	3300027908	Forest Soil	KELNREGRVRMLKILEYVRKTSAFYDSRYFASLLKR
Ga0302234_103821681	3300028773	Palsa	GVAVQFREMNREGRERMFKILEFVQKTTTFYNNRYLNSLTKS
Ga0302222_100428761	3300028798	Palsa	PGSGVAVQFREMNREGRERMFKILEFVQKTTTFYNNRYLNSLTKS
Ga0302180_101248351	3300031028	Palsa	GSGVAVQFREMNREGRERMFKILEFVQKTTTFYNNRYLNSLTKS
Ga0302180_103974402	3300031028	Palsa	IVARLEPGSGVAVEFVEMNREGREKMFKILEFVQKTSTFFNNRYLDSLARK
Ga0170820_134926362	3300031446	Forest Soil	EVNREGRERMFKILEVVQKTTAYYNNRYFEGLLKR
Ga0310915_111119522	3300031573	Soil	AAVQFREMNREARDRMFRILEFVQKANSFYNNKYLDSLTRN
Ga0318542_104006241	3300031668	Soil	GFVTRLDPGSGAAVQFREMNREARDRMFRILEFVQKANSFYNNKYLDSLTRN
Ga0318561_103709722	3300031679	Soil	VQFREMNREARDRMFRIIEFVQKTTTFYNNRYLDSLTRN
Ga0307476_107217292	3300031715	Hardwood Forest Soil	RLDPGSGVAVQFRELNREGRERMLKILEFVQKTTTFYNNRYLNSLTKN
Ga0307477_103924791	3300031753	Hardwood Forest Soil	VAVQFREVNREGREKMFKIMEFVQKSTTFYNNRYFENLLKR
Ga0307478_113971691	3300031823	Hardwood Forest Soil	REMNREGRERMFKILEFVQKTTTFYNNRYLDSLTKM
Ga0310909_105126581	3300031947	Soil	DPGSGAAIQFREMNREARDRMFKILEFVQKTTSFYNNRYLDSLTKN
Ga0307479_100562615	3300031962	Hardwood Forest Soil	PGSGIAVQFKELNREAKEKMYRILEHVQKTNTFYNNRYFENLLKR
Ga0306922_105193472	3300032001	Soil	GAAVQFREMNREARDRMFRIIEFVQKTTTFYNNRYLDSLTRN
Ga0307471_1008223271	3300032180	Hardwood Forest Soil	AVQFKELNREAKEKMYRILEHVQKTNTFYNNRYFENLLKR
Ga0306920_1040539271	3300032261	Soil	VNRLDPGSGVAVQFREMNREARDRMFRVLEFVQKTTTFYNNRYLDSLTKN
Ga0335085_115176761	3300032770	Soil	VARLDPGSGVAVQFRELNREGRERMFRILEFVQKTTTFYNNRYLDTLAKN
Ga0335079_100344425	3300032783	Soil	DPGSGVAVQFREMNREGRERMFKILEFVQKTTTFYNNRYLDSLTKN
Ga0335080_114069122	3300032828	Soil	GFVNRLDPGSGVAVQFREMNREARDRMFRILEFVQKTTTFYNNRYLDSLAKN
Ga0335084_100827543	3300033004	Soil	TRLDPGSGIAVQFREMNREARDRMFKILEFVQKTTTFYNNRYLDSLTKS
Ga0335084_100957103	3300033004	Soil	IAVQFREMNREARDRMFKILEFVQKSTSFYNNRYLDSLTKN
Ga0326727_111909511	3300033405	Peat Soil	GVAVQFREVNREGRERMFKILEFVQKATAFYNNRYFENLLKR
Ga0326726_112780401	3300033433	Peat Soil	AVQFREMNREARERMFRILEFVQKANSFYNNRYLDSLTRN
Ga0316214_10640111	3300033545	Roots	ARIDPGVGVAVQFKETNREGREKMLKILEYVQRTTTFYNNRYFEGLLKR
Ga0334790_161501_2_154	3300033887	Soil	VARLDPGTGVAVQFREVNREGRERMFKILEFVQKTTTFYNNRYLDSLTKS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F080559

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences