Metagenome / Metatranscriptome Family F080565

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F080565
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	65 residues
Representative Sequence	MPYASGETPKVGDYIKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKGA
Number of Associated Samples	61
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	82.61 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	88.70 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (66.957 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.087 % of family members)
Environment Ontology (ENVO)	Unclassified (35.652 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (46.957 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.30% β-sheet: 30.11% Coil/Unstructured: 65.59%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF00072	Response_reg	8.70
PF00589	Phage_integrase	1.74
PF08240	ADH_N	0.87
PF13564	DoxX_2	0.87
PF13683	rve_3	0.87
PF10042	DUF2278	0.87
PF02371	Transposase_20	0.87
PF13426	PAS_9	0.87
PF01842	ACT	0.87
PF07589	PEP-CTERM	0.87
PF05598	DUF772	0.87
PF01740	STAS	0.87
PF07676	PD40	0.87
PF00089	Trypsin	0.87
PF13492	GAF_3	0.87
PF12146	Hydrolase_4	0.87
PF14417	MEDS	0.87
PF14066	DUF4256	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
All Organisms	root	All Organisms	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
cellular organisms	root	All Organisms → cellular organisms	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	16.52 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.87 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.70 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.61 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.74 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.87 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.87 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.74 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.87 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.87 %
Acidipila	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
unclassified Acidipila	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Acidipila sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	0.87 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.87 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.87 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.87 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig14378	Not Available	850	Open in IMG/M
2170459024\|GZRSKLJ01CJIMW	Not Available	511	Open in IMG/M
2189573000\|GPBTN7E01A21LE	Not Available	547	Open in IMG/M
3300000955\|JGI1027J12803_102625049	Not Available	1003	Open in IMG/M
3300004479\|Ga0062595_101936259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300005435\|Ga0070714_102057027	Not Available	557	Open in IMG/M
3300005437\|Ga0070710_10753428	Not Available	692	Open in IMG/M
3300005437\|Ga0070710_11309126	Not Available	539	Open in IMG/M
3300005439\|Ga0070711_100092784	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2179	Open in IMG/M
3300005439\|Ga0070711_100105087	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300005439\|Ga0070711_100202574	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1532	Open in IMG/M
3300005610\|Ga0070763_10206955	Not Available	1048	Open in IMG/M
3300006163\|Ga0070715_10263211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300006163\|Ga0070715_10509545	Not Available	690	Open in IMG/M
3300006172\|Ga0075018_10842195	Not Available	506	Open in IMG/M
3300006173\|Ga0070716_101499323	Not Available	551	Open in IMG/M
3300006174\|Ga0075014_100594768	Not Available	632	Open in IMG/M
3300006175\|Ga0070712_100136512	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300006175\|Ga0070712_101244181	Not Available	648	Open in IMG/M
3300006175\|Ga0070712_101276493	Not Available	640	Open in IMG/M
3300006175\|Ga0070712_101411833	Not Available	607	Open in IMG/M
3300006854\|Ga0075425_101203467	All Organisms → cellular organisms → Bacteria → Acidobacteria	861	Open in IMG/M
3300010154\|Ga0127503_10383818	Not Available	883	Open in IMG/M
3300010341\|Ga0074045_10089583	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2142	Open in IMG/M
3300010379\|Ga0136449_100631613	Not Available	1816	Open in IMG/M
3300012202\|Ga0137363_11549252	Not Available	554	Open in IMG/M
3300012984\|Ga0164309_11431719	Not Available	590	Open in IMG/M
3300012989\|Ga0164305_12080983	Not Available	520	Open in IMG/M
3300017955\|Ga0187817_10767518	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300017955\|Ga0187817_10886052	Not Available	571	Open in IMG/M
3300020579\|Ga0210407_10130285	All Organisms → cellular organisms → Bacteria	1928	Open in IMG/M
3300020579\|Ga0210407_10235811	Not Available	1424	Open in IMG/M
3300020579\|Ga0210407_11105359	Not Available	601	Open in IMG/M
3300020580\|Ga0210403_10707007	Not Available	807	Open in IMG/M
3300020581\|Ga0210399_11132944	Not Available	624	Open in IMG/M
3300020581\|Ga0210399_11207154	Not Available	600	Open in IMG/M
3300020581\|Ga0210399_11516943	Not Available	519	Open in IMG/M
3300020582\|Ga0210395_10970371	Not Available	630	Open in IMG/M
3300020583\|Ga0210401_11066109	Not Available	667	Open in IMG/M
3300021168\|Ga0210406_10007774	All Organisms → cellular organisms → Bacteria	10826	Open in IMG/M
3300021171\|Ga0210405_10014130	All Organisms → cellular organisms → Bacteria	6629	Open in IMG/M
3300021171\|Ga0210405_10019942	All Organisms → cellular organisms → Bacteria	5451	Open in IMG/M
3300021171\|Ga0210405_10181875	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1666	Open in IMG/M
3300021178\|Ga0210408_11365462	Not Available	535	Open in IMG/M
3300021180\|Ga0210396_10112512	Not Available	2458	Open in IMG/M
3300021180\|Ga0210396_10488221	Not Available	1078	Open in IMG/M
3300021180\|Ga0210396_10897048	Not Available	756	Open in IMG/M
3300021180\|Ga0210396_10932376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300021404\|Ga0210389_10739395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	770	Open in IMG/M
3300021420\|Ga0210394_10957279	Not Available	743	Open in IMG/M
3300021475\|Ga0210392_10249231	Not Available	1257	Open in IMG/M
3300021478\|Ga0210402_10013165	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7101	Open in IMG/M
3300021478\|Ga0210402_10609749	Not Available	1011	Open in IMG/M
3300025915\|Ga0207693_10543489	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300025916\|Ga0207663_10581443	Not Available	878	Open in IMG/M
3300025929\|Ga0207664_11209529	Not Available	674	Open in IMG/M
3300026551\|Ga0209648_10030856	All Organisms → cellular organisms → Bacteria	4677	Open in IMG/M
3300026551\|Ga0209648_10067506	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.	3019	Open in IMG/M
3300026551\|Ga0209648_10078126	All Organisms → cellular organisms → Bacteria	2768	Open in IMG/M
3300027783\|Ga0209448_10269488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300027898\|Ga0209067_10490677	Not Available	696	Open in IMG/M
3300030841\|Ga0075384_11340441	Not Available	610	Open in IMG/M
3300030844\|Ga0075377_11626674	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300030848\|Ga0075388_11636321	Not Available	575	Open in IMG/M
3300030916\|Ga0075386_12125663	Not Available	557	Open in IMG/M
3300030935\|Ga0075401_11437226	Not Available	582	Open in IMG/M
3300030945\|Ga0075373_11519736	Not Available	540	Open in IMG/M
3300030945\|Ga0075373_11584372	Not Available	516	Open in IMG/M
3300031057\|Ga0170834_101539057	Not Available	876	Open in IMG/M
3300031057\|Ga0170834_106036948	Not Available	615	Open in IMG/M
3300031057\|Ga0170834_106121787	All Organisms → cellular organisms → Bacteria → Acidobacteria	1421	Open in IMG/M
3300031057\|Ga0170834_110967305	Not Available	1503	Open in IMG/M
3300031122\|Ga0170822_10606526	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300031128\|Ga0170823_10580849	Not Available	634	Open in IMG/M
3300031128\|Ga0170823_10840770	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300031128\|Ga0170823_15821020	Not Available	635	Open in IMG/M
3300031128\|Ga0170823_16336814	Not Available	608	Open in IMG/M
3300031231\|Ga0170824_103324270	Not Available	529	Open in IMG/M
3300031231\|Ga0170824_106224973	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300031231\|Ga0170824_114416431	Not Available	1022	Open in IMG/M
3300031231\|Ga0170824_114674974	All Organisms → cellular organisms → Bacteria → Acidobacteria	1447	Open in IMG/M
3300031231\|Ga0170824_117798022	Not Available	1099	Open in IMG/M
3300031231\|Ga0170824_122379669	Not Available	983	Open in IMG/M
3300031446\|Ga0170820_10107315	Not Available	1536	Open in IMG/M
3300031446\|Ga0170820_11697650	All Organisms → cellular organisms → Bacteria → Acidobacteria	4065	Open in IMG/M
3300031446\|Ga0170820_12158628	Not Available	566	Open in IMG/M
3300031446\|Ga0170820_14846603	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300031446\|Ga0170820_17086699	Not Available	595	Open in IMG/M
3300031469\|Ga0170819_13697311	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1111	Open in IMG/M
3300031469\|Ga0170819_17800441	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300031474\|Ga0170818_101655067	Not Available	852	Open in IMG/M
3300031474\|Ga0170818_103626830	Not Available	637	Open in IMG/M
3300031474\|Ga0170818_104517317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2110	Open in IMG/M
3300031474\|Ga0170818_106831967	Not Available	640	Open in IMG/M
3300031474\|Ga0170818_112508280	Not Available	742	Open in IMG/M
3300031474\|Ga0170818_115566609	Not Available	501	Open in IMG/M
3300031740\|Ga0307468_102042960	Not Available	550	Open in IMG/M
3300031754\|Ga0307475_10219542	Not Available	1521	Open in IMG/M
3300031754\|Ga0307475_10374240	Not Available	1145	Open in IMG/M
3300031820\|Ga0307473_10138668	Not Available	1365	Open in IMG/M
3300031820\|Ga0307473_10352672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	947	Open in IMG/M
3300031820\|Ga0307473_10590223	Not Available	765	Open in IMG/M
3300031820\|Ga0307473_11087245	Not Available	589	Open in IMG/M
3300031962\|Ga0307479_10498198	Not Available	1202	Open in IMG/M
3300032174\|Ga0307470_10282917	Not Available	1115	Open in IMG/M
3300032174\|Ga0307470_10388219	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300032180\|Ga0307471_100446081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1432	Open in IMG/M
3300032180\|Ga0307471_100467235	Not Available	1404	Open in IMG/M
3300032180\|Ga0307471_101335238	Not Available	879	Open in IMG/M
3300032180\|Ga0307471_101874673	Not Available	749	Open in IMG/M
3300032180\|Ga0307471_102922363	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300032180\|Ga0307471_103182651	Not Available	582	Open in IMG/M
3300032205\|Ga0307472_100917853	Not Available	812	Open in IMG/M
3300032205\|Ga0307472_101000292	All Organisms → cellular organisms → Bacteria → Acidobacteria	783	Open in IMG/M
3300032205\|Ga0307472_101023995	Not Available	775	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.13%
Host-Associated	Host-Associated	0.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.04%
Aquatic	Environmental → Aquatic	6.09%
Plants	Host-Associated → Plants	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.04%
Freshwater	Environmental → Aquatic → Freshwater	3.48%
Sediment	Environmental → Aquatic → Sediment	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.39%
Loam	Environmental → Terrestrial → Soil → Loam	14.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.61%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	24.35%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	16.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	12.17%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.61%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.61%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.74%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.87%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.87%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.87%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
2170459024	Grass soil microbial communities from Rothamsted Park, UK - FD1 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300030841	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030935	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00445670	2166559006	Grass Soil	MPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEDLVCIRWDDEGLKLLFSAASEYTLVFRKTA
FD1_06144320	2170459024	Grass Soil	MPYASGEMPKVGDYVKNQCEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIA
N55_00284590	2189573000	Grass Soil	MPYATGETPEVGDYVKNQWEPPGRVTRVHFAQDQEDLICIRWDDEGLKLLFSPASEYTLVFRKTACL
JGI1027J12803_1026250492	3300000955	Soil	MISFDIFMFDICEVSMPYASGETPKVGDYVKNQWEQSGTVTRVHAAQDVQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEVL*
Ga0062595_1019362591	3300004479	Soil	ASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIA*
Ga0070714_1020570271	3300005435	Agricultural Soil	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLV
Ga0070710_107534281	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGQNPEVGDHVKNQWELPGTVTRVHFAHDEEDLICMRWDDEGLKLLFSPASEYS*
Ga0070710_113091261	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPYVGGETPEVGDYVKNQYEQPGTVTRVHFAQNEEERINIRWDDGGIDLPFAPAKEFILISRQT*
Ga0070711_1000927841	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFS
Ga0070711_1001050871	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SMPYASGQNPEVGDHVKNQWELPGTVTRVHFAHDEEDLICMRWDDEGLKLLFSPASEYS*
Ga0070711_1002025742	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGEMPKVGDHVKNQREQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIA*
Ga0070763_102069551	3300005610	Soil	MPYATGETPKVGDYVKNQGERPGTVTRIHAAQDEQERICVMWNDGGISLLFSPASEYSLISRRA*
Ga0070715_102632112	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIA*
Ga0070715_105095451	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPYTNGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERICIMWNDGGTSLLFLSASEYTLISRKV*
Ga0075018_108421951	3300006172	Watersheds	MPYASGESPKVGDYVKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGTCLLFSPASECSLVSRKIA*
Ga0070716_1014993232	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICIRWDDGGLELLFSPASEYTLVSRRSA*
Ga0075014_1005947682	3300006174	Watersheds	MPYATGETPEVGDYIKNRWEQPGTVTRVHFAQDEEERICVRWDDGGLELLFSPASEYTLVSRRST*
Ga0070712_1001365124	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIACTS
Ga0070712_1012441812	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ETPGVGDYIKNQWERLGTVTRVHFAQHEEDLICIRWHDEGLKPLFSPAAEYMLVFRKAA*
Ga0070712_1012764931	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTLVSKRSV*
Ga0070712_1014118332	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIACTSPIR*
Ga0075425_1012034671	3300006854	Populus Rhizosphere	MPYATGETPKVGDYVKNQWEQPCTVTRVHAAQDEQERICIVWNDGGISLLFSSASEYTLISRKV*
Ga0127503_103838182	3300010154	Soil	MPYASGEMPKVGDCVKNQGEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSREIP*
Ga0074045_100895833	3300010341	Bog Forest Soil	MPYETGETPEIGDYIKNQWEQPGTVTRVHFAQDEEERICVRWDDGGAELLLSPASEYSLVSRRT*
Ga0136449_1006316131	3300010379	Peatlands Soil	MPYATGETPEIGDYIKNQWEQPGTVTRVHFAQDEEERICVRWDDGGAELLLSPASEYSLVSRRT*
Ga0137363_115492521	3300012202	Vadose Zone Soil	MPYASGETPKVGDYVKNQWEQPGTVARVHSEQDEQERVCIMWKVGGMSLLFSPASEYHLISRKA*
Ga0164309_114317191	3300012984	Soil	MPYASGETPKVGDYVKNEWEQPGTVTRVHAAQDEQERVCIMWEGRWDLPSEYSLVSRKGACLASVIRLQNVQYHGASSL*
Ga0164305_120809832	3300012989	Soil	MPYASGEMPKVGDHVKNQREQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIACL*
Ga0187817_107675181	3300017955	Freshwater Sediment	MPYATGENPEVGDYVKNQWEQPGTVTRVHFAQDEEDLICIRWDDEGLKLLFSPVSEYMLVFRKTA
Ga0187817_108860521	3300017955	Freshwater Sediment	MPYASGETPKVGDYVKNQWEQPGTVTRVHVEQHEQERVCIMWKDGGISLLFSPASEYSLISGRA
Ga0210407_101302852	3300020579	Soil	MPYASGEMPKVGDYVKNEWEQPGTVTRIHGAQDEQERVCIMWKDGRICLLFSPASECSLVSRKIACTSPIR
Ga0210407_102358113	3300020579	Soil	MPYVGGETPEVGDYVKNQYEQPGTVTRVHFAQNEEERINIRWDDGGIDLPFAPAKEFILISRQT
Ga0210407_111053591	3300020579	Soil	MPYASGETPKVGDYVKNQWEQPGTVTRVHVEQDEQERVCIMWKDGGISLLFSPAS
Ga0210403_107070073	3300020580	Soil	VPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEGERICVRWDDGGLELLFSP
Ga0210399_111329442	3300020581	Soil	MPYATGETPEVGDYIKNRWEQPGTVTRVHFSQDEEERICVRWDDGGLELLFSPASEYMLVSRRR
Ga0210399_112071542	3300020581	Soil	MPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEDLVCIRWDDEGLKLLFSPASEYLLVFRKTA
Ga0210399_115169431	3300020581	Soil	MPYASGETPKVGDYVKNQWEQPGTVTRVHAAQDVQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEHSVGR
Ga0210395_109703712	3300020582	Soil	MPYASGEMPKVGDHVKNQREQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSQKIACTSPIR
Ga0210401_110661091	3300020583	Soil	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEH
Ga0210406_100077748	3300021168	Soil	MPYANGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIACTSPIR
Ga0210405_100141301	3300021171	Soil	MPYATGETPKVGDYVKNQGERPGTVTRIHAAQDEQERICVMWNDGGISLLFSPASEYSLISS
Ga0210405_100199429	3300021171	Soil	MAYATGETPEVGDYVKNQWEQPGTVTRVHFAQDEEDLICIRWDDEGLRLLFSPASEYMLVFRKTA
Ga0210405_101818752	3300021171	Soil	MPYASGETPKVGDYIKNQWEQPGTVTRVHAAQDEQERVCIMWKGGGICLLFSAASEYSLVSRKGA
Ga0210408_113654622	3300021178	Soil	MPYASGEMPKVGDHVKNQREQSGTVTRVHAAQDEQVRVCIMWKDGGICLLFSPASEHTLVSRKIA
Ga0210396_101125122	3300021180	Soil	MPYASGETPKVGDYVKNQWEQPGTVTRVHVEQDEQERVCIMWKDGGISLLFSPASEYSLISRKAPKSQAS
Ga0210396_104882213	3300021180	Soil	SQSSEVSMPYASGENPKVGDYIKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSAASEYSLVSRKGA
Ga0210396_108970481	3300021180	Soil	MAYATGETPEVGDYVKNQWEQPGTVTRVHFAQDEEDLICIRWDDEGLRLLFSPASEY
Ga0210396_109323761	3300021180	Soil	SSEVSMPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIA
Ga0210389_107393951	3300021404	Soil	MPYASGETPKVGDYVKNEWEQAGTVTRVHTAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIA
Ga0210394_109572792	3300021420	Soil	MPYASGETPGVGDYIKNQWERLGTVTRVHFAQHEEDLICIRWHDEGLKPLFSPAAEYMLVFRKAA
Ga0210392_102492313	3300021475	Soil	MPYVGGETPEVGDYVKNQYEQPGTVTRVHFAQNEEERINIRWDDGGIDLPFAPAK
Ga0210402_100131656	3300021478	Soil	MPYASGETPQVGDYVKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASQYSLVSRKMVFCEHSVGRWWP
Ga0210402_106097491	3300021478	Soil	MSYASGEMPKVGDYIKNQWEQSGTVTKVRAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIACTSPIR
Ga0207693_105434892	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIACTSPIR
Ga0207663_105814432	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MPYASGETPKVGDYVKNEWEQPGTVTRVHTAQDEQERVCIMWKDGGICLLFSPASEYSL
Ga0207664_112095291	3300025929	Agricultural Soil	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSQKIACTSPIR
Ga0209648_100308566	3300026551	Grasslands Soil	MPYASGESPKVGDYIKNQWEQPGTVTRVHAAQDERICIMWKVGGISLLFSPASEYSLISRRA
Ga0209648_100675062	3300026551	Grasslands Soil	MPYATGETPEVGDYIKNQWEQPGTVTRVHFAQDEEERICVRWDDGGLELLFSPASEYTLVSRRR
Ga0209648_100781265	3300026551	Grasslands Soil	MPYATGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERICILWNDGGTSLLFSSASEYTLISRKV
Ga0209448_102694881	3300027783	Bog Forest Soil	IGDYIKNHWEQPGTVKRVHSAHDEEERICISWDDGGVELLFSPASEYTLVSRRST
Ga0209067_104906773	3300027898	Watersheds	VPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEEQICVRWDDGGLELLFSP
Ga0075384_113404411	3300030841	Soil	MPYASGEMPKVGDYVKNQCEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEHSVGRW
Ga0075377_116266742	3300030844	Soil	MPYASGEMPKVGDYVKNQCEQSGTVTRVHAAQDEQERVCIMWEGRWDLPSEYSLVSRKGACLASVIHLQNVQYHGASSL
Ga0075388_116363211	3300030848	Soil	MPYASGEMPKVGDYVKNQCEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASE
Ga0075386_121256632	3300030916	Soil	MPYASGEMPKVGDYVKNQWEQPGTVTRIRAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKSA
Ga0075401_114372262	3300030935	Soil	MPYATGETPEVGDYVKNHWEQPGRVTRVHFAQDEEDLICIRWDDEGLKLLFSPASEYT
Ga0075373_115197361	3300030945	Soil	VVVPYAGGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTLLSRRSV
Ga0075373_115843721	3300030945	Soil	MPYATGETPEVGDYVKNHWEQPGRVTRVHFAQDEEDLICIRWDDEGLKLLFSPASEYKLVFRKTA
Ga0170834_1015390572	3300031057	Forest Soil	MPYASGETPKVGDYVKNQWEQPGTVTRVHAAQDQQERVCIMWKDGGICLLFSPASEYSLVCRKIA
Ga0170834_1060369482	3300031057	Forest Soil	DFGESCRDPFLLPVEIMPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDQEDLICIRWDDEGLKLLFSPASEYTLDFRKTACL
Ga0170834_1061217872	3300031057	Forest Soil	MPYATGETPEVGDYVKNHWEQPGRVTRVHFAQDEEDLICIRWDDEGLKLLFSPASEFMLVFRKSA
Ga0170834_1109673052	3300031057	Forest Soil	MPYASGEMPKVGDCVKNQGEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEHTLVSRKIP
Ga0170822_106065262	3300031122	Forest Soil	MPYATGETPEVGDYVKNHWEQPGRVTRVHFAQDEEDLICIPWDNEGLKLLFSPASEYT
Ga0170823_105808491	3300031128	Forest Soil	MPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEDLICIPWDNEGLKLLFSPASEYT
Ga0170823_108407701	3300031128	Forest Soil	MPYASGETPKVGDYVKNQREQPGTVTRVRGAQNEQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEPYT
Ga0170823_158210202	3300031128	Forest Soil	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEVL
Ga0170823_163368142	3300031128	Forest Soil	RLEHSCGPTFSSEVVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICIRWDDGGLELLFSPASEYTLVSRRST
Ga0170824_1033242702	3300031231	Forest Soil	LPEEIMPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEGLICIRWDNEGLKLLFSPATEYTLVFRKTA
Ga0170824_1062249731	3300031231	Forest Soil	LPEEIMPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEDLICIPWDNEGLKLLFSPASEYT
Ga0170824_1144164312	3300031231	Forest Soil	VPYAGGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTLLSRRSV
Ga0170824_1146749743	3300031231	Forest Soil	MPYASGETPKVGDYVKNQWEQPGTVTRVHTAQDEQERICIMWKDGGICLLFSPASEYSLISRRA
Ga0170824_1177980222	3300031231	Forest Soil	MPYATGQTPEVGDHVKNQWELPGTVTRVHFAQDEEDLICIRWDDEGLKLLFSPASEYSLISRKA
Ga0170824_1223796691	3300031231	Forest Soil	LLPEEIMPYATGETPEVGDYVKNQWEQPGRVTRVHFAQDEEDLVCIRWDDEGLKLLFSAASEYTLVFRKTA
Ga0170820_101073152	3300031446	Forest Soil	MPYATGQTPEVGDYVKNQWEQPGTVTRVHSEQDEQERVCIMWKDGGTNLLFSPASEYSLISRKAPKSQAS
Ga0170820_116976504	3300031446	Forest Soil	MPYASGEAPKVGDYVKNQWEQPGTVTRVHTAQDEQERVCIMWKDGGICLLFSPASEYSLISRRA
Ga0170820_121586282	3300031446	Forest Soil	RDPFLLPEEIMPYATGETPEVGDYVKNHWEQPGRVTRVHFAQDEEDLICIRWDDEGLKLLFSPASEYTLVFRKTA
Ga0170820_148466032	3300031446	Forest Soil	MPYASGETPKVGDHVKNQWEQLGTVTRVHAGQDEQERICIMLNDGGVSLLFSPASECTLISRKV
Ga0170820_170866992	3300031446	Forest Soil	GEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTLVSRRSV
Ga0170819_136973111	3300031469	Forest Soil	MPYASGETPKVSDYVKNQWEQPGTVTRVHTAQDEQERVCIMWKDGGICLLFSPASEYSLISRRLSERNLLNLVG
Ga0170819_178004413	3300031469	Forest Soil	MPYASGEMPKVGDYVKNQWEQPGTVTRIRAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEHSVGRW
Ga0170818_1016550673	3300031474	Forest Soil	MPYASGEMPKVGDYVKNQWEQLGTVTRVHAAQDVQERVCIMWKDGGICLLFSPASEYSLV
Ga0170818_1036268301	3300031474	Forest Soil	MATGETPEVADYVKNQWEQPGRVTRVHFAQDEEDLICILWDNEGLKLLFSPASEYT
Ga0170818_1045173173	3300031474	Forest Soil	MPYASGETPKVGDYVKNQREQPGTVTRVRGAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIVFCEHSVGRW
Ga0170818_1068319672	3300031474	Forest Soil	CGPTFSSEVVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEGERICIRWDDGGLELLFSPASEYTLVSRRSV
Ga0170818_1125082802	3300031474	Forest Soil	CGPTFSSEVVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICIRWDDGGLELLFSPASEYALVSRRST
Ga0170818_1155666092	3300031474	Forest Soil	MPYASGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSL
Ga0307468_1020429601	3300031740	Hardwood Forest Soil	VAPPFSSEVVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDG
Ga0307475_102195422	3300031754	Hardwood Forest Soil	MPYASGETPKVGDYIKNQWEQPGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKGA
Ga0307475_103742401	3300031754	Hardwood Forest Soil	MPYATGETPELGDYIKNQWEQPGTVTRVHFAQDEEERICVRWDDGGLELLFSPASEYTLVSRRR
Ga0307473_101386683	3300031820	Hardwood Forest Soil	MPYASGESPKVGDYVKNQWEQPGTVTRVHAEQDEQERVCIMWKDGGTSLLFCPASEYSLISRRT
Ga0307473_103526722	3300031820	Hardwood Forest Soil	MPYATGQTPEVGDYVKNQWEQSGTVTRVHSEQDEQERVCIMWKDGGTNLLFSPASEYSLISRR
Ga0307473_105902232	3300031820	Hardwood Forest Soil	MPYATGQTAEVGDYVKNQWEQPGTVTRVHSEQDEQERVCIMWKDGGTNLLFSPASEYSLISRR
Ga0307473_110872452	3300031820	Hardwood Forest Soil	MPYASGEMPKVGDYVKNQCEQSGTVTRVHAAQDEQERVCIMWEGRWDLPSEYSLVSRKGACLASVIRLQNVQYHGASSL
Ga0307479_104981982	3300031962	Hardwood Forest Soil	VVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTLVSKRSV
Ga0307470_102829171	3300032174	Hardwood Forest Soil	MPYATGQTPEVGDYVKNQWEQPGTVTRVHSEQDEQERVCIMWKDGGTNLLFSPASEYSLISRR
Ga0307470_103882193	3300032174	Hardwood Forest Soil	MPYASGEMPKVGDYVKNQWEQSGTVTRVHAAQDEQERVCIMWKDGGICLLFSPASEYSLVSRKIACTSPIR
Ga0307471_1004460812	3300032180	Hardwood Forest Soil	MPYASAQNPEVGDHVKNQWELPGTVTRVHFAHDEEDLICMRWDDEGLKLLFSPASEYS
Ga0307471_1004672351	3300032180	Hardwood Forest Soil	MPYSTGETPKVGDYVKNQWEQPGTVTRVHAAQDEQERICIMWNDGAEYTLISRKVTLN
Ga0307471_1013352382	3300032180	Hardwood Forest Soil	EVGDYVKNQWGQLGTVTRVRFAQNEEERICIRWDDGGLELLFSPASEYTLVSRRSV
Ga0307471_1018746733	3300032180	Hardwood Forest Soil	SEVVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTQVSRRSV
Ga0307471_1029223631	3300032180	Hardwood Forest Soil	VPYATGEIPEVGDYVKNHWGQLGTVTRVRFAQNEEERICVRWDDGGLELL
Ga0307471_1031826511	3300032180	Hardwood Forest Soil	MPYATGQTPEVGDHVKNQWELTGTVTRVHFAQDEEDLICIRWDDEGLKLLFSPASEYRLISRKA
Ga0307472_1009178532	3300032205	Hardwood Forest Soil	SEVVVPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEEERICVRWDDGGLELLFSPASEYTLVSKRSV
Ga0307472_1010002922	3300032205	Hardwood Forest Soil	MPYATGETPEVGDYVKNQWEQPGRVTRVHFAHDEEDLICIRWDDEGLKLLFSPASE
Ga0307472_1010239951	3300032205	Hardwood Forest Soil	VPYATGEIPEVGDYVKNQWGQLGTVTRVRFAQNEKERICVRWDDGGLELLFSPASEYTLVSKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080565

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences