Metagenome / Metatranscriptome Family F080672

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F080672
Family Type	Metagenome / Metatranscriptome
Number of Sequences	115
Average Sequence Length	40 residues
Representative Sequence	MLTLARFSLGRVLLHLLAMTGDGAFRFHAAGILRELVSR
Number of Associated Samples	82
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.91 %
% of genes near scaffold ends (potentially truncated)	19.13 %
% of genes from short scaffolds (< 2000 bps)	80.87 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.565 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (41.739 % of family members)
Environment Ontology (ENVO)	Unclassified (53.913 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (43.478 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.79% β-sheet: 0.00% Coil/Unstructured: 58.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF02622	DUF179	19.13
PF05708	Peptidase_C92	6.96
PF13458	Peripla_BP_6	6.09
PF00563	EAL	5.22
PF02416	TatA_B_E	4.35
PF07286	D-Glu_cyclase	3.48
PF06441	EHN	2.61
PF01717	Meth_synt_2	2.61
PF11026	DUF2721	2.61
PF13191	AAA_16	1.74
PF12680	SnoaL_2	1.74
PF00486	Trans_reg_C	1.74
PF06146	PsiE	1.74
PF00691	OmpA	1.74
PF08240	ADH_N	1.74
PF13561	adh_short_C2	0.87
PF12536	DUF3734	0.87
PF09335	SNARE_assoc	0.87
PF12146	Hydrolase_4	0.87
PF12706	Lactamase_B_2	0.87
PF00248	Aldo_ket_red	0.87
PF06481	COX_ARM	0.87
PF13560	HTH_31	0.87
PF02321	OEP	0.87
PF01799	Fer2_2	0.87
PF02518	HATPase_c	0.87
PF02678	Pirin	0.87
PF13193	AMP-binding_C	0.87
PF08447	PAS_3	0.87
PF06004	DUF903	0.87
PF00381	PTS-HPr	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1678	Putative transcriptional regulator, AlgH/UPF0301 family	Transcription [K]	19.13
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	5.22
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	5.22
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	5.22
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	5.22
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	4.35
COG4336	Uncharacterized conserved protein YcsI, UPF0317/DUF1446 family	Function unknown [S]	3.48
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	2.61
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	2.61
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.74
COG3223	Phosphate starvation-inducible membrane PsiE (function unknown)	General function prediction only [R]	1.74
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.87
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.87
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.87
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	0.87
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.87
COG1925	HPr or related phosphotransfer protein	Signal transduction mechanisms [T]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.57 %
Unclassified	root	N/A	10.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.57 %
Unclassified	root	N/A	10.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.57 %
Unclassified	root	N/A	10.43 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.13 %
Unclassified	root	N/A	10.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	32.17 %
Unclassified	root	N/A	10.43 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	8.70 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.74 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.87 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	14.78 %
Unclassified	root	N/A	10.43 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.74 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.74 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.87 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	0.87 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.87 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	13.91 %
Unclassified	root	N/A	10.43 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.70 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.87 %
Candidatus Competibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae	0.87 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	0.87 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.87 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.87 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	13.91 %
Unclassified	root	N/A	10.43 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.70 %
Plasticicumulans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans	0.87 %
Azotobacter group	subfamily	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group	0.87 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.87 %
Pseudaminobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Pseudaminobacter	0.87 %
Candidatus Accumulibacter contiguus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter contiguus	0.87 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	13.91 %
Unclassified	root	N/A	10.43 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.70 %
Azotobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter	0.87 %
Pseudaminobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Pseudaminobacter → Pseudaminobacter soli	0.87 %
Plasticicumulans lactativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	0.87 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.87 %
Candidatus Accumulibacter contiguus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter contiguus	0.87 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	13.91 %
Unclassified	root	N/A	10.43 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	8.70 %
Azotobacter beijerinckii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter → Azotobacter beijerinckii	0.87 %
Pseudaminobacter soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Pseudaminobacter → Pseudaminobacter soli	0.87 %
Plasticicumulans lactativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	0.87 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.87 %
Candidatus Accumulibacter contiguus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter contiguus	0.87 %
Betaproteobacteria bacterium SCGC AG-212-J23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	0.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.87 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16694791	All Organisms → cellular organisms → Bacteria → Proteobacteria	2158	Open in IMG/M
2088090014\|GPIPI_16932214	All Organisms → cellular organisms → Bacteria → Proteobacteria	2502	Open in IMG/M
2162886006\|SwRhRL3b_contig_2752787	All Organisms → cellular organisms → Bacteria → Proteobacteria	907	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101599029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2300	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105507313	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105680138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1543	Open in IMG/M
3300000559\|F14TC_104439789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	775	Open in IMG/M
3300000956\|JGI10216J12902_106748961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	989	Open in IMG/M
3300004463\|Ga0063356_100014095	All Organisms → cellular organisms → Bacteria → Proteobacteria	7308	Open in IMG/M
3300005295\|Ga0065707_10086774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5309	Open in IMG/M
3300005713\|Ga0066905_100009279	All Organisms → cellular organisms → Bacteria → Proteobacteria	4553	Open in IMG/M
3300005981\|Ga0081538_10322053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	563	Open in IMG/M
3300006845\|Ga0075421_101003116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	945	Open in IMG/M
3300006845\|Ga0075421_102164350	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	588	Open in IMG/M
3300006847\|Ga0075431_102141838	Not Available	514	Open in IMG/M
3300006894\|Ga0079215_10525372	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300007004\|Ga0079218_11064726	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300009156\|Ga0111538_10812882	All Organisms → cellular organisms → Bacteria → Proteobacteria	1184	Open in IMG/M
3300009157\|Ga0105092_10021450	All Organisms → cellular organisms → Bacteria → Proteobacteria	3398	Open in IMG/M
3300009162\|Ga0075423_13031681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter contiguus	515	Open in IMG/M
3300009597\|Ga0105259_1022846	All Organisms → cellular organisms → Bacteria → Proteobacteria	1314	Open in IMG/M
3300009609\|Ga0105347_1008433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3584	Open in IMG/M
3300009609\|Ga0105347_1111782	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300009609\|Ga0105347_1138912	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	943	Open in IMG/M
3300009610\|Ga0105340_1000220	All Organisms → cellular organisms → Bacteria → Proteobacteria	28511	Open in IMG/M
3300009610\|Ga0105340_1000463	All Organisms → cellular organisms → Bacteria → Proteobacteria	19692	Open in IMG/M
3300009610\|Ga0105340_1032633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2022	Open in IMG/M
3300009610\|Ga0105340_1111432	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1106	Open in IMG/M
3300009610\|Ga0105340_1338183	Not Available	664	Open in IMG/M
3300009678\|Ga0105252_10501848	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300009678\|Ga0105252_10553793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	531	Open in IMG/M
3300010037\|Ga0126304_11283869	Not Available	502	Open in IMG/M
3300010046\|Ga0126384_10765078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	862	Open in IMG/M
3300010047\|Ga0126382_10317551	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300010047\|Ga0126382_10666211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	867	Open in IMG/M
3300010047\|Ga0126382_11948979	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300011403\|Ga0137313_1109312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	502	Open in IMG/M
3300011415\|Ga0137325_1004492	All Organisms → cellular organisms → Bacteria → Proteobacteria	2825	Open in IMG/M
3300011415\|Ga0137325_1011747	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1713	Open in IMG/M
3300011417\|Ga0137326_1045394	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	951	Open in IMG/M
3300011425\|Ga0137441_1131571	Not Available	618	Open in IMG/M
3300011432\|Ga0137428_1125032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	744	Open in IMG/M
3300011438\|Ga0137451_1043170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1318	Open in IMG/M
3300011439\|Ga0137432_1053793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Competibacteraceae → Plasticicumulans → Plasticicumulans lactativorans	1214	Open in IMG/M
3300011439\|Ga0137432_1132281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	796	Open in IMG/M
3300011439\|Ga0137432_1164439	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300011440\|Ga0137433_1054341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1193	Open in IMG/M
3300011440\|Ga0137433_1079641	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1004	Open in IMG/M
3300011443\|Ga0137457_1098557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	926	Open in IMG/M
3300011445\|Ga0137427_10253537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	737	Open in IMG/M
3300012021\|Ga0120192_10032375	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	872	Open in IMG/M
3300012038\|Ga0137431_1051748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1124	Open in IMG/M
3300012164\|Ga0137352_1035590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	962	Open in IMG/M
3300012172\|Ga0137320_1116460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	569	Open in IMG/M
3300012175\|Ga0137321_1138698	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	543	Open in IMG/M
3300012179\|Ga0137334_1054665	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300012203\|Ga0137399_11081388	Not Available	675	Open in IMG/M
3300012231\|Ga0137465_1062495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1105	Open in IMG/M
3300012685\|Ga0137397_10751025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	724	Open in IMG/M
3300012922\|Ga0137394_10003679	All Organisms → cellular organisms → Bacteria → Proteobacteria	11564	Open in IMG/M
3300012927\|Ga0137416_10892508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SCGC AG-212-J23	790	Open in IMG/M
3300012948\|Ga0126375_11061432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	664	Open in IMG/M
3300012948\|Ga0126375_11918777	Not Available	521	Open in IMG/M
3300014861\|Ga0180061_1060158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	631	Open in IMG/M
3300014867\|Ga0180076_1109679	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300014868\|Ga0180088_1074635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	607	Open in IMG/M
3300014872\|Ga0180087_1065633	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300014876\|Ga0180064_1060358	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	769	Open in IMG/M
3300014879\|Ga0180062_1088814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	696	Open in IMG/M
3300014881\|Ga0180094_1002928	All Organisms → cellular organisms → Bacteria → Proteobacteria	2971	Open in IMG/M
3300014965\|Ga0120193_10077295	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300015257\|Ga0180067_1042988	Not Available	938	Open in IMG/M
3300015259\|Ga0180085_1039534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1338	Open in IMG/M
3300015371\|Ga0132258_10143517	All Organisms → cellular organisms → Bacteria → Proteobacteria	5717	Open in IMG/M
3300015371\|Ga0132258_13318616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1107	Open in IMG/M
3300015372\|Ga0132256_102951567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	572	Open in IMG/M
3300015374\|Ga0132255_101194348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1145	Open in IMG/M
3300018083\|Ga0184628_10021973	All Organisms → cellular organisms → Bacteria → Proteobacteria	3147	Open in IMG/M
3300018422\|Ga0190265_10012402	All Organisms → cellular organisms → Bacteria → Proteobacteria	6482	Open in IMG/M
3300018422\|Ga0190265_10016021	All Organisms → cellular organisms → Bacteria → Proteobacteria	5831	Open in IMG/M
3300018422\|Ga0190265_10439361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Azotobacter group → Azotobacter → Azotobacter beijerinckii	1409	Open in IMG/M
3300018422\|Ga0190265_11648502	Not Available	752	Open in IMG/M
3300018422\|Ga0190265_11696320	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300018432\|Ga0190275_11241918	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300018432\|Ga0190275_11250077	Not Available	818	Open in IMG/M
3300018469\|Ga0190270_12142556	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300018469\|Ga0190270_12208462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Pseudaminobacter → Pseudaminobacter soli	611	Open in IMG/M
3300020063\|Ga0180118_1068526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	648	Open in IMG/M
3300027326\|Ga0209731_1052256	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300027362\|Ga0208320_1005303	All Organisms → cellular organisms → Bacteria → Proteobacteria	1451	Open in IMG/M
3300027513\|Ga0208685_1000800	All Organisms → cellular organisms → Bacteria → Proteobacteria	10779	Open in IMG/M
3300027513\|Ga0208685_1051038	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
3300027533\|Ga0208185_1000278	All Organisms → cellular organisms → Bacteria → Proteobacteria	28449	Open in IMG/M
3300027533\|Ga0208185_1003473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4067	Open in IMG/M
3300027533\|Ga0208185_1045838	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1058	Open in IMG/M
3300027533\|Ga0208185_1048448	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300027573\|Ga0208454_1142114	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300027909\|Ga0209382_10996888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	874	Open in IMG/M
3300028047\|Ga0209526_10424759	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300028809\|Ga0247824_10513817	Not Available	708	Open in IMG/M
3300030620\|Ga0302046_10397104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1132	Open in IMG/M
3300031547\|Ga0310887_10049802	All Organisms → cellular organisms → Bacteria → Proteobacteria	1874	Open in IMG/M
3300031720\|Ga0307469_11598897	Not Available	626	Open in IMG/M
3300031740\|Ga0307468_100013002	All Organisms → cellular organisms → Bacteria	3361	Open in IMG/M
3300031740\|Ga0307468_100136660	All Organisms → cellular organisms → Bacteria → Proteobacteria	1544	Open in IMG/M
3300031740\|Ga0307468_100312448	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300031740\|Ga0307468_101724728	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300031820\|Ga0307473_10144665	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300032017\|Ga0310899_10463847	Not Available	617	Open in IMG/M
3300032174\|Ga0307470_10202695	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300032174\|Ga0307470_11361006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	584	Open in IMG/M
3300032180\|Ga0307471_101828058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	758	Open in IMG/M
3300034115\|Ga0364945_0148286	All Organisms → cellular organisms → Bacteria → Proteobacteria	703	Open in IMG/M
3300034149\|Ga0364929_0121131	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M
3300034178\|Ga0364934_0112923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1024	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.57%
Host-Associated	Host-Associated	10.43%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	45.22%
Aquatic	Environmental → Aquatic	44.35%
Plants	Host-Associated → Plants	10.43%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	42.61%
Soil	Environmental → Terrestrial → Soil	42.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.48%
Floodplain	Environmental → Terrestrial → Floodplain	2.61%
Freshwater	Environmental → Aquatic → Freshwater	1.74%
Roots	Host-Associated → Plants → Roots	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	42.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.22%
Loam	Environmental → Terrestrial → Soil → Loam	3.48%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.61%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	42.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.22%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.61%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.61%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.74%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	41.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.22%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.22%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.61%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.61%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.61%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	1.74%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.87%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009597	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012164	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT730_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012179	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT262_2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300014867	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D	Environmental	Open in IMG/M
3300014868	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT830_16_10D	Environmental	Open in IMG/M
3300014872	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10D	Environmental	Open in IMG/M
3300014876	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10D	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015257	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10D	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027362	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT299 (SPAdes)	Environmental	Open in IMG/M
3300027513	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890 (SPAdes)	Environmental	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01105580	2088090014	Soil	MEKLAYFRLGRIVLHTVAMLGDRAYRFHAAGILRELALS
GPIPI_00425330	2088090014	Soil	MLTLARFSGGRIILHLGALLGDGAVRFHAAGIARELRAWVGA
SwRhRL3b_0561.00002140	2162886006	Switchgrass Rhizosphere	MLTLARFGLGRVFLHLVAMLGDGAFRFHAAGILRELVSR
INPhiseqgaiiFebDRAFT_1015990292	3300000364	Soil	MLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILRELVSR*
INPhiseqgaiiFebDRAFT_1055073132	3300000364	Soil	MEKLAYFRLGRIVLHTVAMLGDRAYRFHAAGILRELALS*
INPhiseqgaiiFebDRAFT_1056801382	3300000364	Soil	MLTLARFSGGRIILHLGALLGDGAVRFHAAGIARELRAWVGA*
F14TC_1044397892	3300000559	Soil	MLTLARFSGGRILLHVAALLGDGEVRFHAAGIARELRAWVGF*
JGI10216J12902_1067489613	3300000956	Soil	MLTLARFSLGRVVLHLIAMVGDRAFRFHAAGIRREFNL*
Ga0063356_1000140957	3300004463	Arabidopsis Thaliana Rhizosphere	MLTLARFSAGRVVLHIFAMLGDREFHFHAAGIVRELVSR*
Ga0065707_100867744	3300005295	Switchgrass Rhizosphere	MLTLARFGLGRVFLHLVAMLGDGAFRFHAAGILRELVSR*
Ga0066905_1000092794	3300005713	Tropical Forest Soil	MEKLAHYRLGRIFLHTLAMLGDGAFRFHTAGILRELA*
Ga0081538_103220531	3300005981	Tabebuia Heterophylla Rhizosphere	RFSLGRVLLHLVAMMGDGAFRFHVAGIVREFVSR*
Ga0075421_1010031163	3300006845	Populus Rhizosphere	MLTLARFSLGRVVLHLIAMAGDREFRFHAAGIRREFSL*
Ga0075421_1021643502	3300006845	Populus Rhizosphere	VLILARFSLGRVLLHLLAMMGDGAFRFHAAGILRELIR*
Ga0075431_1021418381	3300006847	Populus Rhizosphere	RMEKLAYSRPGRILLHVLAMCADGAVRFHTAGILRELALS*
Ga0079215_105253722	3300006894	Agricultural Soil	MLTLARFSAGRVVLHFLAMLGDREFRFHAAGIMRELVIR*
Ga0079218_110647261	3300007004	Agricultural Soil	MLILARFGLGRVFLHLVAMLGDRAFRFHAAGIRRELVSR*
Ga0111538_108128821	3300009156	Populus Rhizosphere	RTSGTDMLTLARFGLGRVFLHLVAMLGDGAFRFHAAGILRELVSR*
Ga0105092_100214502	3300009157	Freshwater Sediment	MLTLARFSLGRVLLHLFAMMGDGALRFHAAGILREFVSR*
Ga0075423_130316811	3300009162	Populus Rhizosphere	MESLRIGDCMLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILRE
Ga0105259_10228462	3300009597	Soil	MLMLARFSLGRVLLHLLAMMGDGALRFHAAGILREFVSR*
Ga0105347_10084335	3300009609	Soil	MLTLARFSLGRVLLHLVAMSRDGAYRFHGAGILREFASR*
Ga0105347_11117822	3300009609	Soil	MLTLARFSLGRVLLHLFAMMGDGAVRFHAAGILREFVSR*
Ga0105347_11389123	3300009609	Soil	MLMLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0105340_100022033	3300009610	Soil	MGSLSMLMLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0105340_100046319	3300009610	Soil	MAALARFSHGRVLLHLVAMLGDRAFRFHAAGILREFASR*
Ga0105340_10326333	3300009610	Soil	LIRMLVLARFSLGRVLLHLIAMLGDRAVRFHAAGILREFSS*
Ga0105340_11114323	3300009610	Soil	MRSLSIMLTLARFSLGRVLLHLFAMMGDGAFRFHAAGILRELVSR*
Ga0105340_13381831	3300009610	Soil	MTKLARFSLGRVLLHLIAMVGDRAGRFHCAGIMRELS
Ga0105252_105018482	3300009678	Soil	MLTLARFSLGRALLHLFAMMGDGAVRFHAAGILREFVSR*
Ga0105252_105537931	3300009678	Soil	MTHLDAMLMLARFSLGRVLLHLLAVMGDGALRFHAAGILRELMSR
Ga0126304_112838692	3300010037	Serpentine Soil	MLTLARFSLGRVVLHLIAMAGDRAFRFHAAGIRREFSS*
Ga0126384_107650782	3300010046	Tropical Forest Soil	MLTLARFSGGRILLHVAALLGDGEVRFHAAGIARELRG*
Ga0126382_103175512	3300010047	Tropical Forest Soil	MEKLAHFRLGRIVPHTLAMFGDGAFRFHAAGILRELA*
Ga0126382_106662112	3300010047	Tropical Forest Soil	MLTLARFSGGRIVLHLAALLGDGAVRFHAAGIARELRAWVGC*
Ga0126382_119489791	3300010047	Tropical Forest Soil	MENLARSRFGRVLLHLIAMAGDGAFRFHAAGIMRELPWTQ*
Ga0137313_11093121	3300011403	Soil	KAARRRSLDPMLTLARFSLGRVLLHLIAMAGDRAFRFHAAGIVREFASR*
Ga0137325_10044924	3300011415	Soil	MLMLARFSLGRVLLHLLAMRGDGALRFHAAGILRELMSR*
Ga0137325_10117472	3300011415	Soil	MLMLARFSLGRVLLHLLAVMGDGALRFHAAGILRELMSR*
Ga0137326_10453942	3300011417	Soil	MLMLARFSLGRALLHLFAMMGDGAVRFHAAGILREFVSR*
Ga0137441_11315713	3300011425	Soil	MGSLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0137428_11250322	3300011432	Soil	MLTLARFSLGRVLLHLLAMIGDRAFRFHTAGILREFASR*
Ga0137451_10431702	3300011438	Soil	MLMLARFSPGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0137432_10537933	3300011439	Soil	MLTLARFSLGRVLLHLLAMIGDRAVRFHTAGILREFVSR*
Ga0137432_11322812	3300011439	Soil	MLTLARFSGGRILLHLAALVGDGAVRFHAAGIAREM
Ga0137432_11644392	3300011439	Soil	MLMLARFSLGRVLLHLLAVMGDGALRFHAAGMLRELMSR*
Ga0137433_10543413	3300011440	Soil	MLTLARFSFGRVLLHLFAMVGDRAFRFHAAGILREFVSR*
Ga0137433_10796411	3300011440	Soil	HCMLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILRELVSR*
Ga0137457_10985573	3300011443	Soil	TSGTEMLTLARFSLGRVLLHLVAMSRDGAYRFHGAGILREFASR*
Ga0137427_102535373	3300011445	Soil	MLMLARFSLGRVLLHLLAMRGDGEIRFHAAGILRELMGR*
Ga0120192_100323752	3300012021	Terrestrial	MLTLARFSLGRVLLHLFAMLGDGAFRFHAAGILREFMSRRSIWTEKA*
Ga0137431_10517482	3300012038	Soil	MLTLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0137352_10355905	3300012164	Soil	MLTLARFSLGRVLLHLLAMTGDRAFRFHAAGILREFVGR*
Ga0137320_11164601	3300012172	Soil	QMLTLARFSGGRIFLHLAALLGDGAIRFHAAGIARELRAWARQ*
Ga0137321_11386981	3300012175	Soil	LACSARWSTRHMTHLDAMLMLARFSLGRVLLHLLAVMGDGALRFHAAGILRELISR*
Ga0137334_10546652	3300012179	Soil	MTHLDAMLMLARFSLGRVLLHLLAVMGDGALRFHAAGILRELISR*
Ga0137399_110813882	3300012203	Vadose Zone Soil	VVILARSSFGRVLLHLLAMLGDRAFRFHGAGILRELVSQ*
Ga0137465_10624953	3300012231	Soil	MLMLARFSPGRVLLHLLAMMGDGALRFHAAGILREFVSR*
Ga0137397_107510252	3300012685	Vadose Zone Soil	MLTLARFGGGRIVLHLAALLGDGALRFHAAGIAR*
Ga0137394_100036797	3300012922	Vadose Zone Soil	MLTLARFGGGRIVLHLAALLGDGALRFHAAGIARELRTWAGC*
Ga0137416_108925082	3300012927	Vadose Zone Soil	VILARSSFGRVLLHLLAMLGDRAFRFHGAGILRELVSQ*
Ga0126375_110614321	3300012948	Tropical Forest Soil	MLILARFSGGRILLHVAALLGDGAVRFHAAGIARELRGWVGS
Ga0126375_119187772	3300012948	Tropical Forest Soil	MLILARFSGGRIVLHLAALVGDGAVRFHAAGIARELRAWVGY*
Ga0180061_10601582	3300014861	Soil	MTHLDAMLMLARFSLGRVLLHLLAMMGDGALRFHAAGILREFVSR*
Ga0180076_11096792	3300014867	Soil	RFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0180088_10746352	3300014868	Soil	MTHLDAMLMLARFSLGRVLLHLLAMMGDGALRFHAAGILRE
Ga0180087_10656332	3300014872	Soil	MLMLARFSLGRVLLHLLAMMGDGALRFHAAGILREFLSR*
Ga0180064_10603582	3300014876	Soil	MLTLARFSLGRVLLHLLAMMGDGALRFHAAGILREFVSR*
Ga0180062_10888142	3300014879	Soil	MLMLARFSLGRVLLHLLAVMGDGALRFHAAGILRELISR*
Ga0180094_10029283	3300014881	Soil	MLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR*
Ga0120193_100772951	3300014965	Terrestrial	MESFGIGHCMLTLARFSLGRVVLHLLAMIGDGALRFHTAGILRELVSR*
Ga0180067_10429882	3300015257	Soil	MIHLDAMLMLARFSLGRVLLHLLAVMGDGALRFHAAGMLRELMSR*
Ga0180085_10395344	3300015259	Soil	MLTLARFSLGRVLLHLLAMTGDRAFRFHAAGILREFVSR*
Ga0132258_101435173	3300015371	Arabidopsis Rhizosphere	MLTLARFSLGRVFLHLVAMLGDGAFRFHAAGILRELVSR*
Ga0132258_133186163	3300015371	Arabidopsis Rhizosphere	MESLRIGHCMLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILREVASR*
Ga0132256_1029515671	3300015372	Arabidopsis Rhizosphere	MESLRIGHCMLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILR
Ga0132255_1011943484	3300015374	Arabidopsis Rhizosphere	MGHCMLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILREVASR*
Ga0184628_100219735	3300018083	Groundwater Sediment	MESLRMGHCMLTLARFSLGRVVLHLLAMFGDGAFRFHAAGILRELVSR
Ga0190265_100124024	3300018422	Soil	MLTLARFSLGRVVLHLIAMAGDRAFRFHAAGIRREFSS
Ga0190265_100160216	3300018422	Soil	MLTLARFSLGRVVLHLVALLGDRAFRFHAAGILRELVGQ
Ga0190265_104393613	3300018422	Soil	MLTFARFSFGRVLLHLVAMAGDRAFRFHGAGILREFVSR
Ga0190265_116485021	3300018422	Soil	MLTLARFSLGRVVLHLIAMAGDRAFRFHAAGIRREFSF
Ga0190265_116963202	3300018422	Soil	MLTLARFSLGRVFLHLVAMLGDGAFRFHAAGILREFVSR
Ga0190275_112419183	3300018432	Soil	MLTLARFSLGRVVLHLIAMAGDRAFRFHAAGIRREFSL
Ga0190275_112500771	3300018432	Soil	SAFLELSMLTLARFRLGRVVLHLIAMAGDRAFRFHAAGIRREFSF
Ga0190270_121425563	3300018469	Soil	MLTLARFGTGRVLLHLLAMLGDRAFRFHAAGILREFVSR
Ga0190270_122084622	3300018469	Soil	MLTLARFSLGRVVLHLIAMAGDRAFRFHAAGIRREFNL
Ga0180118_10685261	3300020063	Groundwater Sediment	MLMLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR
Ga0209731_10522563	3300027326	Forest Soil	MLTLARFSLGRVLLHLIAMLRDRAFRFHGAGILREFVSR
Ga0208320_10053034	3300027362	Soil	MLMLARFSLGRVLLHLLAMMGDGALRFHAAGILREFVSR
Ga0208685_10008005	3300027513	Soil	MLTLARFSLGRVLLHLVAMSRDGAYRFHGAGILREFASR
Ga0208685_10510382	3300027513	Soil	MLTLARFSLGRVLLHLFAMMGDGAVRFHAAGILREFVSR
Ga0208185_10002789	3300027533	Soil	MGSLSMLMLARFSLGRVLLHLLAMMGDGALRFHAAGILRELMSR
Ga0208185_10034738	3300027533	Soil	MAALARFSHGRVLLHLVAMLGDRAFRFHAAGILREFASR
Ga0208185_10458382	3300027533	Soil	MRSLSIMLTLARFSLGRVLLHLFAMMGDGAFRFHAAGILRELVSR
Ga0208185_10484483	3300027533	Soil	MLTLARFSLGRVLLHLIAMLGDRAVRFHAAGILREFSS
Ga0208454_11421142	3300027573	Soil	MLTLARFSLGRALLHLFAMMGDGAVRFHAAGILREFVSR
Ga0209382_109968882	3300027909	Populus Rhizosphere	VLILARFSLGRVLLHLLAMMGDGAFRFHAAGILRELIR
Ga0209526_104247592	3300028047	Forest Soil	MRSLARFRLGRILLHALAMLGDREVRFHAAGIMRELP
Ga0247824_105138172	3300028809	Soil	MLTLARFSLGRVLLHLLAMTGDGAFRFHAAGILRELVSR
Ga0302046_103971041	3300030620	Soil	MLTLARFSLGRVVLHLIAMLRDGAFRFHGAGILRELAGR
Ga0310887_100498021	3300031547	Soil	VVAVSFGRVFLHLVAMLGDGAFRFHAAGILRELVSR
Ga0307469_115988971	3300031720	Hardwood Forest Soil	MLTLARFSLGRIFLHLVAMLGDGAFRFHGAGILRELVSR
Ga0307468_1000130024	3300031740	Hardwood Forest Soil	MATTLVRYRLGRILLHLAAMTGDGALRFHAAGIRRELRLPG
Ga0307468_1001366602	3300031740	Hardwood Forest Soil	MEKLAHYRLGRSVLHTLAMIGDGAFRFHTAGILRELAVS
Ga0307468_1003124482	3300031740	Hardwood Forest Soil	MLTLARFSLGRVFLHLVAMLGDGAFRFHGAGILRELVSR
Ga0307468_1017247283	3300031740	Hardwood Forest Soil	MLTLARFSLGRVFLHLVAMLGDGALRFHAAGILRELVSR
Ga0307473_101446652	3300031820	Hardwood Forest Soil	MATLVRYRLGRILLHLAAMIGDGALRFHAAGIRRELRLQG
Ga0310899_104638472	3300032017	Soil	MGKLAHFRLGRILLHTVAMLGDRAFRFHAAGILRELA
Ga0307470_102026952	3300032174	Hardwood Forest Soil	MATTLVRYRLGRILLHLAAMIGDGALRFHAAGIRRELRLQG
Ga0307470_113610061	3300032174	Hardwood Forest Soil	YSGGRILLHLGALLGDRAVRFHAAGIAREVRAWVGC
Ga0307471_1018280581	3300032180	Hardwood Forest Soil	MLTLARFSGGRIVLHLAALLGDGAVRFHAAGIARELRAWVRY
Ga0364945_0148286_275_394	3300034115	Sediment	MLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILRELVSR
Ga0364929_0121131_550_696	3300034149	Sediment	MESLRMGHCMLTLARFSLGRVVLHLLAMIGDGAFRFHAAGILRELVSR
Ga0364934_0112923_3_128	3300034178	Sediment	MLTLARSGLGRVLLHLLAMVGDRAVRFHAAGIVRELPWIVGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F080672

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences