Metagenome / Metatranscriptome Family F081486

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081486
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	90 residues
Representative Sequence	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGELEDFGEGRVGSLNRL
Number of Associated Samples	90
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.47 %
% of genes near scaffold ends (potentially truncated)	98.25 %
% of genes from short scaffolds (< 2000 bps)	88.60 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.105 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.403 % of family members)
Environment Ontology (ENVO)	Unclassified (41.228 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.035 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.29% β-sheet: 10.08% Coil/Unstructured: 75.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF01035	DNA_binding_1	7.02
PF13637	Ank_4	6.14
PF03793	PASTA	6.14
PF12796	Ank_2	3.51
PF00583	Acetyltransf_1	1.75
PF00753	Lactamase_B	1.75
PF00089	Trypsin	1.75
PF00294	PfkB	0.88
PF06736	TMEM175	0.88
PF13474	SnoaL_3	0.88
PF07992	Pyr_redox_2	0.88
PF03640	Lipoprotein_15	0.88
PF00005	ABC_tran	0.88
PF00296	Bac_luciferase	0.88
PF12849	PBP_like_2	0.88
PF13686	DrsE_2	0.88
PF01022	HTH_5	0.88
PF12681	Glyoxalase_2	0.88
PF00999	Na_H_Exchanger	0.88
PF00932	LTD	0.88
PF07690	MFS_1	0.88
PF13442	Cytochrome_CBB3	0.88
PF04545	Sigma70_r4	0.88
PF13378	MR_MLE_C	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	7.02
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	7.02
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.88
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.88
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.88
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.88
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.88
COG3548	Uncharacterized membrane protein	Function unknown [S]	0.88
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.88
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.11 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.11 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.11 %
Unclassified	root	N/A	7.89 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	71.05 %
Unclassified	root	N/A	7.89 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.16 %
Unclassified	root	N/A	7.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.75 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %

Name	Rank	Taxonomy	Distribution
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	30.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	14.91 %
Unclassified	root	N/A	7.89 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.75 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %

Name	Rank	Taxonomy	Distribution
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	30.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.40 %
Unclassified	root	N/A	7.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.88 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	0.88 %

Name	Rank	Taxonomy	Distribution
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	30.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.40 %
Unclassified	root	N/A	7.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.88 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	30.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.40 %
Unclassified	root	N/A	7.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	30.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.40 %
Unclassified	root	N/A	7.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Mucilaginibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %

Name	Rank	Taxonomy	Distribution
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	30.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.40 %
Unclassified	root	N/A	7.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.75 %
Mucilaginibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter	0.88 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002077\|JGI24744J21845_10039658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	883	Open in IMG/M
3300004156\|Ga0062589_100368458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1150	Open in IMG/M
3300004157\|Ga0062590_101187498	Not Available	743	Open in IMG/M
3300004479\|Ga0062595_100300744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1081	Open in IMG/M
3300004480\|Ga0062592_101264928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	694	Open in IMG/M
3300004643\|Ga0062591_100644956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	946	Open in IMG/M
3300004643\|Ga0062591_100924796	All Organisms → cellular organisms → Bacteria → Terrabacteria group	821	Open in IMG/M
3300004643\|Ga0062591_102408960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300005294\|Ga0065705_10496792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	782	Open in IMG/M
3300005332\|Ga0066388_103854901	All Organisms → cellular organisms → Bacteria → Terrabacteria group	765	Open in IMG/M
3300005339\|Ga0070660_100092358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2389	Open in IMG/M
3300005353\|Ga0070669_100973966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	727	Open in IMG/M
3300005354\|Ga0070675_100161681	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300005356\|Ga0070674_100088405	All Organisms → cellular organisms → Bacteria	2230	Open in IMG/M
3300005356\|Ga0070674_100882672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	778	Open in IMG/M
3300005356\|Ga0070674_101998466	Not Available	528	Open in IMG/M
3300005363\|Ga0008090_14390326	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300005435\|Ga0070714_100882829	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300005438\|Ga0070701_10784506	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005438\|Ga0070701_10802200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300005535\|Ga0070684_101301098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	684	Open in IMG/M
3300005535\|Ga0070684_102033623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	542	Open in IMG/M
3300005544\|Ga0070686_101511445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300005547\|Ga0070693_101454534	Not Available	534	Open in IMG/M
3300005718\|Ga0068866_10020190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3048	Open in IMG/M
3300005719\|Ga0068861_100575671	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300005840\|Ga0068870_11178098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300005842\|Ga0068858_100818398	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300006237\|Ga0097621_100083025	All Organisms → cellular organisms → Bacteria	2669	Open in IMG/M
3300006358\|Ga0068871_100628889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	978	Open in IMG/M
3300006578\|Ga0074059_11857506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300006806\|Ga0079220_10017024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2981	Open in IMG/M
3300006871\|Ga0075434_101583050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	664	Open in IMG/M
3300006881\|Ga0068865_100799583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	813	Open in IMG/M
3300006904\|Ga0075424_100738883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1050	Open in IMG/M
3300009094\|Ga0111539_10119679	All Organisms → cellular organisms → Bacteria	3085	Open in IMG/M
3300009094\|Ga0111539_11096408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	925	Open in IMG/M
3300009098\|Ga0105245_12415093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	579	Open in IMG/M
3300009101\|Ga0105247_10732083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	748	Open in IMG/M
3300009101\|Ga0105247_11170871	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009148\|Ga0105243_10157154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1956	Open in IMG/M
3300009148\|Ga0105243_11762308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	649	Open in IMG/M
3300009148\|Ga0105243_12767292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	531	Open in IMG/M
3300009156\|Ga0111538_13189420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	571	Open in IMG/M
3300009176\|Ga0105242_11937971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	630	Open in IMG/M
3300009177\|Ga0105248_11508726	Not Available	761	Open in IMG/M
3300009553\|Ga0105249_11589519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	726	Open in IMG/M
3300010359\|Ga0126376_13024736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	520	Open in IMG/M
3300010360\|Ga0126372_10997299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	849	Open in IMG/M
3300010362\|Ga0126377_11744821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	698	Open in IMG/M
3300010375\|Ga0105239_10836929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1055	Open in IMG/M
3300010400\|Ga0134122_11909638	All Organisms → cellular organisms → Bacteria → Terrabacteria group	629	Open in IMG/M
3300010400\|Ga0134122_12295812	All Organisms → cellular organisms → Bacteria → Terrabacteria group	585	Open in IMG/M
3300012354\|Ga0137366_10128017	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1916	Open in IMG/M
3300012898\|Ga0157293_10328854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	516	Open in IMG/M
3300012899\|Ga0157299_10259127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	555	Open in IMG/M
3300012912\|Ga0157306_10005583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2306	Open in IMG/M
3300012914\|Ga0157297_10050884	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1084	Open in IMG/M
3300012948\|Ga0126375_11303261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	610	Open in IMG/M
3300012986\|Ga0164304_10855258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	707	Open in IMG/M
3300012987\|Ga0164307_11244761	Not Available	619	Open in IMG/M
3300013307\|Ga0157372_11322199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	832	Open in IMG/M
3300013308\|Ga0157375_11183987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	896	Open in IMG/M
3300014325\|Ga0163163_13061757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	521	Open in IMG/M
3300014969\|Ga0157376_10450073	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300015371\|Ga0132258_11831990	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300015372\|Ga0132256_100002255	All Organisms → cellular organisms → Bacteria	16185	Open in IMG/M
3300015372\|Ga0132256_100315252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1651	Open in IMG/M
3300015372\|Ga0132256_103607019	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300015372\|Ga0132256_103796010	Not Available	508	Open in IMG/M
3300015373\|Ga0132257_101049575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1027	Open in IMG/M
3300015373\|Ga0132257_102382823	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300015373\|Ga0132257_102556583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	664	Open in IMG/M
3300015373\|Ga0132257_103547509	Not Available	568	Open in IMG/M
3300015373\|Ga0132257_103909195	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300015374\|Ga0132255_100516654	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300015374\|Ga0132255_102426909	Not Available	801	Open in IMG/M
3300015374\|Ga0132255_102968869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	724	Open in IMG/M
3300015374\|Ga0132255_103993343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	626	Open in IMG/M
3300015374\|Ga0132255_104204549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	611	Open in IMG/M
3300019356\|Ga0173481_10083474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1187	Open in IMG/M
3300020005\|Ga0193697_1005726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3039	Open in IMG/M
3300021082\|Ga0210380_10166391	All Organisms → cellular organisms → Bacteria → Terrabacteria group	992	Open in IMG/M
3300022893\|Ga0247787_1032242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	737	Open in IMG/M
3300025907\|Ga0207645_10967386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	577	Open in IMG/M
3300025908\|Ga0207643_10019066	All Organisms → cellular organisms → Bacteria	3758	Open in IMG/M
3300025924\|Ga0207694_10555676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300025926\|Ga0207659_10955739	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae → Mucilaginibacter	737	Open in IMG/M
3300025926\|Ga0207659_11661318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300025927\|Ga0207687_11648734	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300025931\|Ga0207644_10252665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1407	Open in IMG/M
3300025934\|Ga0207686_10052094	All Organisms → cellular organisms → Bacteria	2553	Open in IMG/M
3300025934\|Ga0207686_11423477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	571	Open in IMG/M
3300025940\|Ga0207691_10454325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1090	Open in IMG/M
3300025942\|Ga0207689_11713017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	521	Open in IMG/M
3300025960\|Ga0207651_10903449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300026023\|Ga0207677_11588808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	605	Open in IMG/M
3300026045\|Ga0208535_1003327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1686	Open in IMG/M
3300026121\|Ga0207683_10050060	All Organisms → cellular organisms → Bacteria	3659	Open in IMG/M
3300026142\|Ga0207698_10044010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3351	Open in IMG/M
3300027821\|Ga0209811_10289743	Not Available	629	Open in IMG/M
3300028380\|Ga0268265_10526850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1118	Open in IMG/M
3300028722\|Ga0307319_10192315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	667	Open in IMG/M
3300028803\|Ga0307281_10384417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	535	Open in IMG/M
3300028811\|Ga0307292_10212488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	797	Open in IMG/M
3300028876\|Ga0307286_10194395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300028884\|Ga0307308_10547275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	555	Open in IMG/M
3300031562\|Ga0310886_10055762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1810	Open in IMG/M
3300031740\|Ga0307468_101775790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300031854\|Ga0310904_10120385	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300031858\|Ga0310892_10152027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1343	Open in IMG/M
3300031908\|Ga0310900_10166701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1511	Open in IMG/M
3300032013\|Ga0310906_10442787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	867	Open in IMG/M
3300033551\|Ga0247830_11258975	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.14%
Environmental	Environmental	43.86%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.14%
Terrestrial	Environmental → Terrestrial	42.98%
Aquatic	Environmental → Aquatic	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	33.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.18%
Roots	Host-Associated → Plants → Roots	2.63%
Freshwater	Environmental → Aquatic → Freshwater	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.30%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.65%
Loam	Environmental → Terrestrial → Soil → Loam	7.02%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.88%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.14%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.26%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.88%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.40%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	9.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	7.02%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.26%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.26%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.51%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.51%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.88%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.88%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S126-311R-4	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026045	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24744J21845_100396581	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGEVTTVRGIDAVLEWYAAGGAADAGAPEDLGGDEGLDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADVKT
Ga0062589_1003684581	3300004156	Soil	MSSEAMEVVNRWRASNFERPVVDDVLAENVEWVVPERGGQATIRGIDAVLEWYAGGGAADQGVPEDLGDPESFDVSEERGELEDFGEGRVGSLNRLVYTSRESGEV
Ga0062590_1011874981	3300004157	Soil	VSSEATDVVNRWRASDFEPEAVEDVLAEDVEWVVPKGEEIVTLRGIEAVLEWYRGGAATDDAAGDRGGADDLDVSEERGELEDLGDGRVGSLNRL
Ga0062595_1003007441	3300004479	Soil	MEVVNRWRASNFERPMVDEVLAENVEWVVPKGGGATTLTGIDAVLEWYTGGGVADEGVPEDLESLDVSEERGELEDFGEGRVGSLNRLT
Ga0062592_1012649282	3300004480	Soil	MEVVNRWRSANFERGAVEDVLAEDVEWVVPQDGGVTTLRGIDAVLEWYQGGGAVDEEAPEDPAVAESLDVSEERGELED
Ga0062591_1006449561	3300004643	Soil	MSSEAMEVVNRWRASNFERPVVDDVLAENVEWVVPERGGQATIRGIDAVLEWYAGGGAADQGVPEDLGDPESFDVSEERGELEDFGEGRVGSLNR
Ga0062591_1009247961	3300004643	Soil	METINRWRAANFERGAVEDVLAEDVEWVVPRRGGVTRVRGIDAVLEWYTSGGAADELLPDESLDFSEERGELEDFGDGRVGSLNRLIYTSKESGEVAYVKTH
Ga0062591_1024089601	3300004643	Soil	MEVVNRWRAANFERGAVEDVLAEDVEWVVPERGGVTTLRGIDAVLAWYGGGGAADEGVPGDAESLDVSEERGELEDFGEGRVGSLNRLI
Ga0065705_104967921	3300005294	Switchgrass Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPKGGGVTTLRGIDAVLEWYEAGGAAEEGAPEDLGGGGAESVDFSEERGELEDFGEG
Ga0066388_1038549011	3300005332	Tropical Forest Soil	MEVVNRWRSANFEREAVEDVLAEDVEWVVPGTDGTTTLRGIDAVLNWYMSGGVADEGTPEDLDVREERGELEDFGDGRVGAVNRVISTSKESGE
Ga0070660_1000923583	3300005339	Corn Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGELEDFGEGRVGSLNRL
Ga0070669_1009739661	3300005353	Switchgrass Rhizosphere	MEAVNRWRAANFERGAVEDVLAEDVEWVVPERGAVTTLRGIDAVLAWYGGGGAADEGAPENLGGLETLDVSEERGELEDFGDGRVGSLNRLIYTSK
Ga0070675_1001616813	3300005354	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERG
Ga0070674_1000884054	3300005356	Miscanthus Rhizosphere	MKTVNRWRAANFERGAVEEVLADDVEWVVPQGSGVTRVRGIDAVLEWYASGGAADELPPDESLDVSEERGELEDFGDGRVGSLNRLIYTS
Ga0070674_1008826721	3300005356	Miscanthus Rhizosphere	VSSEAIETVNRWRTANFERAAVEDVLAEDVEWVVPKGGGVTTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGDGRVGSLNRLTYTRKESG
Ga0070674_1019984662	3300005356	Miscanthus Rhizosphere	VSSEATDVVNRWRASDFEPEAVEDVLAEDVEWVVPERGGVTTLRGIDAVLAWYGGGGAADDGAPENLGGPESLDV
Ga0008090_143903261	3300005363	Tropical Rainforest Soil	MDVVNRWRAANFERPAVDQVLAEDVEWVVPKGGGLTTLHGIDAVLEWYQGGGVADEGAPENQPAESLDVSEERGELEDFGEGRVGS
Ga0070714_1008828291	3300005435	Agricultural Soil	VSGEALEVVNRWRSANFERQAVEDVLADDVEWVVPQGGGVTTLRGIDAVLDWYASGGAADEGAPEDVDVSEERGPLEEFGEG
Ga0070701_107845062	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGVLEDFGDGRVGSVNRLIYTK
Ga0070701_108022001	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	METVNRWRTANFERAAVEDVLAEDVEWVVPKGGGATTLRGIDAVLAWYEAGGATDEGTREAAESLDVSEERG
Ga0070684_1013010981	3300005535	Corn Rhizosphere	MSSEEMNVVNSWRAANFEREAVKDVLAEDVEWVVPKSGGLTTLRGIDAVLEWYETGGFVDEAAPEGLGAAESVDVAEERGELE
Ga0070684_1020336231	3300005535	Corn Rhizosphere	MSSEAMEVVNRWRASNFEREAVEDVLASDVEWVVPTGGAVSTLKGIDAVLAWYEGGGAADEGAPGDLGDPEGLEFSEERGELQDFGDGRVGSLNRMIYTH
Ga0070686_1015114452	3300005544	Switchgrass Rhizosphere	MSSEEMNVVNSWRAANFEREAVKDVLAEDVEWVVPKSGGLTTLRGIDAVLEWYETGGFVDEAAPEELGGAESVDVAEERGELQDFGEGRVGSLNRL
Ga0070693_1014545341	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MEVVNRWRAANFERGAVEDVLAEDVQWVVPQGGGVTTLSGIDAVLGWYAGGGAADEGAPEGVGDPDTVDVTEERGELEDFE
Ga0068866_100201904	3300005718	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGEVTTVRGIDAVLEWYAAGGAADAGAPEDLGGDEGLDVSEERGELEDFGE
Ga0068861_1005756712	3300005719	Switchgrass Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGELEDFGDGRVGSVNRLTEPTRPSP
Ga0068870_111780981	3300005840	Miscanthus Rhizosphere	VSSEAIETVNRWRTANFERAAVEDVLAEDVEWVVPKGGGVTTLRGIDAVLGWYEAGGATEEGTREAAESLDVSEERG
Ga0068858_1008183983	3300005842	Switchgrass Rhizosphere	MEVVNRWRASNFEREAVEGVLASDVEWVVPTGGAVSTLKGIDAVLAWYEGGGAADEGAPGDLGDPEGLEFSEERGELQ
Ga0097621_1000830253	3300006237	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGVLEDFGDGRVGSVNRLIYTKESGEVAQVRSHRL
Ga0068871_1006288891	3300006358	Miscanthus Rhizosphere	MEVVNRWRAANFERGAVEDVLAEDVEWVVPQGGGVTTLSGIDAVLGWYAGGGAADEGAPEGVGDPDTVDVTEERGELEDFEDGRVGSVNRLIYTRKDSGEVAAVKTARLA
Ga0074059_118575061	3300006578	Soil	MTTGQPGAMEVVNRWRAANFERRAVEDVLAEDVEWVVPGRGGITTLRGIDAVLEWYAAGGAADAGAPEDLGGAESVDVSEERGE
Ga0079220_100170241	3300006806	Agricultural Soil	MEVVNRWRAANFEREAVEDVLAEDVEWVVPKGDGVTTLRGIDAVLDWYATGGAVDEAARDDLRGAEGVDFSEERGEL
Ga0075434_1015830501	3300006871	Populus Rhizosphere	MEVVNRWRASNFERPEVEDVLAENVEWVVPKGGGMTTLTGIDAVLEWYGGGGVADEGVPADLESLDVSEERGELEDFGEGRVGSLNRLTYTFKESGEV
Ga0068865_1007995831	3300006881	Miscanthus Rhizosphere	MEAVNRWRASNFERGAVEDVLAEDVEWVVPERGAITTLRGIDAVLAWYGGGGAADEGAPENLGGLETLDVSEERGELEDFGDGRV
Ga0075424_1007388831	3300006904	Populus Rhizosphere	MAVVNRWRASDFERPTVDDVLAENVEWVVPKGGGTTTLNGIDAVLEWYTGGGVADEGVPEDLESLDVSEERGELEDIGEGRVGSLNRLTYTSKDSGEVAY
Ga0111539_101196791	3300009094	Populus Rhizosphere	MDVVDRWRASTFDRATVEDILAEDVEWVVPKRGGATTLRGIDAVLEWYSGGGAADEGVPESVGDPETLEVSEERGELEDLGEGRVGSLNRLIYTRKGSGEVAYERS
Ga0111539_110964081	3300009094	Populus Rhizosphere	MDVVNRWRASNFDRPVVDDVLAENVEWVVPERGGQATLRGIDAVLEWYAGGGAADQGAPDDLGDPESYDVAEERGELEDFGEGRVGSLNRLVYT
Ga0105245_124150932	3300009098	Miscanthus Rhizosphere	MKTVNRWRAANFERGAVEEVLADDVEWVVPQGSGVTRVRGIDAVLEWYASGGAADELPPDESLDVSEERGELEDFGDGRVGSLNRLIYTSKGSGEVASVKTHRLV
Ga0105247_107320832	3300009101	Switchgrass Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGEVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAEGLDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADV
Ga0105247_111708712	3300009101	Switchgrass Rhizosphere	MEVVNRWRASNFEREAVEDVLASDVEWVVPTGGAVSTLKGIDAVLAWYEGGGAADEGAPGDLGDPEGLEFSEERGELQDFGDG
Ga0105243_101571541	3300009148	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGEVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAEGLDVSEERGELEDFGEGRVGSLNRLIYTRKESGE
Ga0105243_117623082	3300009148	Miscanthus Rhizosphere	MSSEALEVVNRWRASNFERPAVDDVLAENVEWVVPERGGQTTLRGIDAVLGWYGGGGAADEGLPEDLGDPESFDVSEEQGELEDFGE
Ga0105243_127672922	3300009148	Miscanthus Rhizosphere	VGSDAIEVVNRWRAANFEREAVEDVLAEDVEWVVPKGEEIVTLRGIAAVLEWYGGGGATDEGASEDLGDVASLDVSEERGELEDFGDGRVGSLNRLIY
Ga0111538_131894201	3300009156	Populus Rhizosphere	LDVVNRWRASNFERQAVEDVLAEDVEWVVPTRGEVTTLRGIDAVLEWYEAGGAADEGVPEELGGAESVDVSEERGDLEDFGEGRVGSLNRLIYTR
Ga0105242_119379712	3300009176	Miscanthus Rhizosphere	MEVVNRWRAANFERGAVEDVLAEDVEWVVPERGGVTTLRGIDAVLAWYGGGGAVDEEATEDLGGPESLDVSEERGELEDFGEGRVGSLNRLIYTSKES
Ga0105248_115087262	3300009177	Switchgrass Rhizosphere	MEVVNRWRASDFERSTADDVLAENVEWVVPKGGGTTTLTGIDAVLEWYTGGGVADEGVPEDLESLDVSEERGELEDIGEGRV
Ga0105249_115895191	3300009553	Switchgrass Rhizosphere	METVNRWRTANFERAAVEDVLAEDVEWVVPKGGGATTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGDGRVGSLNRLTYT
Ga0126376_130247362	3300010359	Tropical Forest Soil	MAVVNRWRASNFEREAVEEVLAEDVEWVVPKGGDPTTLRGIDAVLEWYQGGGAADEGEPEDADPESFEVSEERGELEDVGEGRVGALNR
Ga0126372_109972992	3300010360	Tropical Forest Soil	MDVVNRWRAANFERGAVEAALADDVEWVVPQRGAVTTQRGIDAVLDWYASGGAVDEGAPENVGDAESLDVREERGPLEEFGEGRVGSLNRLIYT
Ga0126377_117448212	3300010362	Tropical Forest Soil	MEVVNRWRAANFERPAVDDVLAEDVEWVVPKGGGMTTLHGIDAVLEWYAGGGGPADEGVPEGVDVAEERGELQDFGEGRVGSLNRLIYTRQDSGEVASVKTG
Ga0105239_108369291	3300010375	Corn Rhizosphere	MSSEEMNVVNSWRAANFEREAVKDVLAEDVEWVVPKSGGLTTLRGIDAVLEWYETGGFVDEAAPEGLGAAESVDV
Ga0134122_119096382	3300010400	Terrestrial Soil	MKTVNRWRAANFERGAVEEVLADDVEWVVPQGSGVTRVRGIDAVLEWYASGGAADELPPDESLDVSEERGELEDFGDGRVGSLNRLIYTSKGS
Ga0134122_122958121	3300010400	Terrestrial Soil	VSEAIETVNRWRAANFERAAVEEVLADDVEWVVPQSSGVTRVRGIDAVLEWYASGGAADELPPDESLDVSEERGELEDFGDGR
Ga0137366_101280171	3300012354	Vadose Zone Soil	VSSEAIEVVNRWRASNFERGAVEDVLAEDVEWVVPKRGAVTTLRGIDAVLEWYAGGGAADEGVPEDLGGAESVDF
Ga0157293_103288542	3300012898	Soil	METVNRWRAANFERAAVAAVLAEDVEWVVPKGGGVTTLRGIDAVLGWYEAGGATDEGTRKAAESLDVSEERGELEDYGDGRVGSLNRL
Ga0157299_102591271	3300012899	Soil	MEVVNRWRSSNFERRAVEDVLAEDVEWVVPKGGGVTTLRGIDAVLGWYGGGGAADEGAPEELGGAQDVDVSEERGDLEDFGEGRVGSLNRLIYTSKASGEVAHVK
Ga0157306_100055831	3300012912	Soil	METVNRWRAANFERAAVAAVLAEDVEWVVPKGGGVTTLRGIDAVLGWYEAGGATEEGTREAAESLDVSEERGELEDYGDGRVGSLNRLTYTRKESGDVAEVTTARLV
Ga0157297_100508841	3300012914	Soil	METINRWRAANFERGAVEDVLAEDVEWVVPTPGGVTRVRGIDAVLEWYTSGGAADELLPDESLDFSEERGELEDFGDGRVGSLNRLI
Ga0126375_113032611	3300012948	Tropical Forest Soil	MTSDAMEVVNRWRASNFERQAVEDVLAEDVEWVVPTGGEVTTLRGIDAVLGWYEAGGAVDLGAPEDLGGADSVDFSEE
Ga0164304_108552582	3300012986	Soil	MEVVNRWRAANFERRAVEDVLAEDVEWVVPSRGGVTTLRGIDAVLEWYAAGGAADTGTSEDLGGAESVDVSEERGELEDF
Ga0164307_112447611	3300012987	Soil	MEVVNRWRAANFERGAVEDVLAEDVEWVVPQGGGVTTLSGIDAVLGWYAGGGAADEGAPEAVGDPDTVDVTEERGELEDFEDGRVGSVID*
Ga0157372_113221991	3300013307	Corn Rhizosphere	MSSEEMNVVNSWRAANFEREAVKDVLAEDVEWVVPKSGGLTTLRGIDAVLEWYETGGFVDEAAPEGLGAAESVDVAEERGELEDFGEGRVGSLNRLIYT
Ga0157375_111839872	3300013308	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGVLEDFGDGRVGSVNRL
Ga0163163_130617572	3300014325	Switchgrass Rhizosphere	VGSDAIEVVNRWRAANFEREAVEDVLAEDVEWVVPERGGVTTLRGIDAVLAWYGGGGAADDGAPENLGGPESLDVSEERGELEDFGEGRVGSLNRLIYTSKE
Ga0157376_104500733	3300014969	Miscanthus Rhizosphere	MEVVNRWRASNFEREAVEGVLASDVEWVVPTGGAVSTLKGIDAVLAWYEGGGAADEGAPGDLGDPEGLEFSEERGELQDFGDGRVGSL
Ga0132258_118319902	3300015371	Arabidopsis Rhizosphere	MEVVNRWRAANFERGAVEDVLAEDVEWIVPERGGVTTLRGIDAVLAWYGGGGAVDEEATEDLGGPESLDVSEERGELEDFGEG
Ga0132256_1000022551	3300015372	Arabidopsis Rhizosphere	MEVVNRWRAANFERRAVEDVLAEDVEWVVPQGGGVTTLRGIDAVLEWYAGGGAADEGAPEDLGDAESVDVSEER
Ga0132256_1003152521	3300015372	Arabidopsis Rhizosphere	VGSEALDVVNRWRAANFDRDAVQDVLAEDVEWVVPQGGGVTTLRGIDAVLGWYEAGGATDEGTAEPAESLDVAEERGELEDYG
Ga0132256_1036070192	3300015372	Arabidopsis Rhizosphere	MRSDAMETVNRWRASNFEREAVKKVFAEDVEWVVPQGGGVTRVRGIDAVLEWYTSGGAADELLPDESLDFSEERGELEDFGDGRVGSLNRLIY
Ga0132256_1037960101	3300015372	Arabidopsis Rhizosphere	MDVVNRWRASNFEREAVADVLAEDVEWIVPKAGEPTTLRGIDAVLACYESGGAADEGEPDDLGDAESLVVSEERGELEDF
Ga0132257_1010495751	3300015373	Arabidopsis Rhizosphere	MEVVNRWRASNFERSEVEDVLAENVEWVVPKGGAKTTLTGIDAVLEWYGGGGAADEGVPGDLESLDVSEERGELKDFGEGRVG
Ga0132257_1023828232	3300015373	Arabidopsis Rhizosphere	VSSEALDVVNRWRGSNFERQAVEDVLAEDVEWVVPNQGGVTTLRGIDAVLEWYEAGGAADEGAPESLGDVDVSEERGDLEDFG
Ga0132257_1025565831	3300015373	Arabidopsis Rhizosphere	MQVVNRWRAANFERRAVEDVLAEDVEWVVPQGSGVGTLRGIDAVLEWYEGGGIAGEGAPEDLGGAEGIDLSEERGELEDYGEGRVGSLNRLIYTRKESGEV
Ga0132257_1035475091	3300015373	Arabidopsis Rhizosphere	MEVVNRWRASAFERSTVDDVLAENVEWVVPKGGGTTTLTGIDAVLEWYTGGGVADEGAPEDLESLDVSEERGELEDIGEGRVGSLNR
Ga0132257_1039091951	3300015373	Arabidopsis Rhizosphere	MSSDAMQVVNRWRALNLERESIEDVLAEDVEWVVPQGDGVTTLRGIAAVLEWYEGGGAVDEGAEDREDAEKLDVAEERGELEDLGEGQVGSLNR
Ga0132255_1005166541	3300015374	Arabidopsis Rhizosphere	MSSEAMQVVNRWRALNLERESIEDVLAEDVEWVVPQGDGVTTLRGIAAVLEWYEGGGAVDEGAEDREDAEDGVAPAVTDGRGE
Ga0132255_1024269092	3300015374	Arabidopsis Rhizosphere	MEVVNRWRASNFERAEVEAVLAENVEWVVPKGGGMTTLTGIDAVLEWYGGGGAADEGVPDDLESLDVSEER
Ga0132255_1029688692	3300015374	Arabidopsis Rhizosphere	VSGEALEVVNRWRSANFERQAVEDVLADDVEWVVPQGGGVTTLRGIDAVLDWYASGGAADEGAPEDVDVSEERGPLEEFGEGRVGSLNRLIYTRKGSDDVVGVKAAR
Ga0132255_1039933431	3300015374	Arabidopsis Rhizosphere	MAVVNRWRASNFEREAVEDVLAEDVEWVVPEASGLTTLRGVDAVLAWYGGGGAADDGVAEELGGPKSLDVSEERGELEDFGEGRVGSLNRLIYR
Ga0132255_1042045492	3300015374	Arabidopsis Rhizosphere	MEVVNRWRAANFEREAVEDVLAEDVEWVVPKGDGVTTLRGIDAVLDWYATGGAVDEAARDDLRGAEGVDFSEERGELEDFGDGRVGSLNRLIYTM
Ga0173481_100834741	3300019356	Soil	METINRWRAANFERGAVEDVLAEDVEWVVPRRGGVTRVRGIDAVLEWYTSGGAADELLPDESLDFSEERGELEDFGDGRVGSLNRLIYT
Ga0193697_10057263	3300020005	Soil	MEVVNRWRAANFERRAVEDVLAEDVEWVVPGRGGVTTLRGIDAVLEWYAAGGAADAGAPEDLGGAESVDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADVKTARL
Ga0210380_101663913	3300021082	Groundwater Sediment	VSSEALETVNRWRGSNFERGAVEDVLADDVEWVVPNRGGVSRVRGIDAVLEWYASGGAADELLPDESLDFSEERGELEDFG
Ga0247787_10322422	3300022893	Soil	METVNRWRTANFERAAVEDVLAEDVEWVVPKGGGATTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGE
Ga0207645_109673861	3300025907	Miscanthus Rhizosphere	MGLEDKINEVRANFEREAVKDVLAEDVEWVVPKSGGLTTLRGIDAVLEWYETGGFVDEAAPEGLGAAESVDVAEERGELEDFGEGRVGSLNR
Ga0207643_100190664	3300025908	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGVLEDFGDGRVGSVNR
Ga0207694_105556761	3300025924	Corn Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGELEDFGEGRVGSLNRLIYTRK
Ga0207659_109557392	3300025926	Miscanthus Rhizosphere	MEAVNRWRASNFERGAVEDVLAEDVEWVVPERGAVTTLRGIDAVLAWYGGGGAADEGAPENLGGLETLDVSEERGELEDFGDGRVGSLNRLIYTSK
Ga0207659_116613182	3300025926	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGEL
Ga0207687_116487341	3300025927	Miscanthus Rhizosphere	MSSEAMEVVNRWRASNFEREAVEDVLASDVEWVVPTGGAVSTLKGIDAVLAWYEGGGAADEGAPGDLGDPEGLEFSEERGE
Ga0207644_102526651	3300025931	Switchgrass Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGEVTTVRGIDAVLEWYAAGGAADAGAPEDLGGDEGLDVSEERGE
Ga0207686_100520943	3300025934	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGVLEDFGDGRVGSVN
Ga0207686_114234771	3300025934	Miscanthus Rhizosphere	MEVVNRWRAANFERQAVEDVLAEDVEWVVPSRGGVTTLRGIDAVLEWYAAGGAADVGAPEDLGGAESVDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADVKT
Ga0207691_104543251	3300025940	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRRSAPLEVSEERGELEDFGDGRVGSVNR
Ga0207689_117130171	3300025942	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADV
Ga0207651_109034493	3300025960	Switchgrass Rhizosphere	VSSEAIETVNRWRTANFERAAVEDVLAEDVEWVVPKGGGVTTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGDGRV
Ga0207677_115888081	3300026023	Miscanthus Rhizosphere	MEAVNRWRASNFERGAVEDVLAEDVEWVVPERGAVTTLRGIDAVLAWYGGGGAADEGAPENLGGAETLDVSEERGELEDFGDGRVGSLNRLIYTSKE
Ga0208535_10033274	3300026045	Natural And Restored Wetlands	MDVVNRWRASTFDRATVEDILAEDVEWIVPGPGGATTLRGIDAVLDWYSGGGAADEGVPESLGDPETLEVSEERGELEDFGEGRVGSLDQRCLTRNAPKP
Ga0207683_100500604	3300026121	Miscanthus Rhizosphere	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDRRGSAPLEVSEERGEL
Ga0207698_100440104	3300026142	Corn Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGGVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGELED
Ga0209811_102897431	3300027821	Surface Soil	MEVVNRWRASNFERRAVEDVLADDVEWVVPQGGGVTTLQGVDAVLEWYGGGGATDEGASEDPRGSAPLEVSEERGEL
Ga0268265_105268501	3300028380	Switchgrass Rhizosphere	MEVVNRWRASNFERRAVEDVLAEDVEWVVPGRGEVTTVRGIDAVLEWYAAGGAADAGAPEDLGGAESLDVSEERGELEDFGEGRVGSLNRLIYTRKESGEVADVK
Ga0307319_101923151	3300028722	Soil	MEVVNRWRASNFERGAVEDVLAQDVEWVVPKRGGLTTLRGIDAVLEWYAAGGAADAGAPEDLRGAESVDVSEERGE
Ga0307281_103844172	3300028803	Soil	MEVVNRWRASNFERGAVEAVLAEDVEWVVPKRGGVTTLRGIDAVLEWYDAGGAAADEGVPEDLGGLDFSEER
Ga0307292_102124881	3300028811	Soil	MEAVNRWRAANFERRAVEDVLAEDVEWVVPSRGGVTTLRGIDAVLEWYAAGGAADAGAPEDLGGAESVDVSEERGELQDFGEGRVGSLNR
Ga0307286_101943951	3300028876	Soil	MEVVNRWRAANFERRAVEDVLAEDVEWVVPSRGGVTTLRGIDAVLEWYAAGGAADAGAPEDLGGAESVDVSEERGELQD
Ga0307308_105472751	3300028884	Soil	MEVVNRWRAANFERRAVEDVLAEDVEWVVPSRGGVTTRRGIDAVLEWYAAGGAADAGAPEDLGGAESVDVSEERGELQDFGEGRVGSLNR
Ga0310886_100557623	3300031562	Soil	METVNRWRTANFERAAVEDVLAEDVEWVVPKSGGATTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGDGRVGSLNRLTYTRK
Ga0307468_1017757902	3300031740	Hardwood Forest Soil	MEVVNRWRAANFERRAVEDVLAEDVEWVVPSRGGVTTLRGIDAVLEWYAAGGAADAGASDDLGGAESVDVSEERGELEDFGEGRVGSLNRLIY
Ga0310904_101203851	3300031854	Soil	METVNRWRTANFERAAVEDVLAEDVEWVVPKGGGATTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGDGRVGSLNR
Ga0310892_101520273	3300031858	Soil	METVNRWRTANFERAAVEDVLAADVEWVVPKSGGVTTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGEGRVGSLNRLIYTRKESGEVADVK
Ga0310900_101667011	3300031908	Soil	METVNRWRTANFERAAVEDVLAEDVEWVVPKGGGATTLRGIDAVLGWYEAGGATDEGTREAAESLDVSEERGELEDYGDGRVGSLNRLTYTRKESGEVAEV
Ga0310906_104427872	3300032013	Soil	MEVVNRWRSANFERGAVEDVLAEDVEWVVPQDGGVTTLRGIDAVLEWYQGGGAVDEEAPEDPAVAESLDVSEERGELEDYGEGRVGSLNRLIYTRKESGEVADV
Ga0247830_112589751	3300033551	Soil	METINRWRASNFERGAVEDVLAADVEWVVPTRGGVTRVRGIDAVLEWYASGGAADELLPDESLDFSEERGELEDFGDGRVGSLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081486

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences