Metagenome / Metatranscriptome Family F081787

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081787
Family Type	Metagenome / Metatranscriptome
Number of Sequences	114
Average Sequence Length	58 residues
Representative Sequence	NSPPLHEGARIRQISEDQAKLLFECEDNSTLDVTIVDPGNSVIVRDKNSQVEYLG
Number of Associated Samples	81
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.65 %
% of genes near scaffold ends (potentially truncated)	71.05 %
% of genes from short scaffolds (< 2000 bps)	91.23 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.789 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.193 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.930 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.14% Coil/Unstructured: 63.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF00072	Response_reg	2.63
PF10099	RskA	1.75
PF01068	DNA_ligase_A_M	1.75
PF01035	DNA_binding_1	1.75
PF00805	Pentapeptide	0.88
PF00106	adh_short	0.88
PF13676	TIR_2	0.88
PF00076	RRM_1	0.88
PF00854	PTR2	0.88
PF13561	adh_short_C2	0.88
PF14312	FG-GAP_2	0.88
PF02371	Transposase_20	0.88
PF08281	Sigma70_r4_2	0.88
PF07366	SnoaL	0.88
PF00107	ADH_zinc_N	0.88
PF12681	Glyoxalase_2	0.88
PF00082	Peptidase_S8	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	1.75
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.75
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.75
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	1.75
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.88
COG3104	Dipeptide/tripeptide permease	Amino acid transport and metabolism [E]	0.88
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
All Organisms	root	All Organisms	34.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
cellular organisms	root	All Organisms → cellular organisms	34.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	34.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	9.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.39 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.63 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9.65 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.75 %
Abditibacteriota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota	0.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2.63 %
Methylacidiphilae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.75 %
unclassified Abditibacteriota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota	0.88 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.63 %
Methylacidiphilales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.75 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2.63 %
Methylacidiphilaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.75 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	2.63 %
Methylacidiphilum	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.75 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2.63 %
Methylacidiphilum fumariolicum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.75 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.79 %
Methylacidiphilum fumariolicum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	1.75 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.75 %
Chthoniobacter flavus Ellin428	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	0.88 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Abditibacteriota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908009\|FWIRA_GRAM18401D72T8	Not Available	513	Open in IMG/M
2170459009\|GA8DASG01AE4RX	Not Available	509	Open in IMG/M
2170459013\|GO6OHWN02J3BUM	Not Available	511	Open in IMG/M
2170459016\|G1P06HT01CHDKX	Not Available	521	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100814191	Not Available	533	Open in IMG/M
3300000955\|JGI1027J12803_101728798	Not Available	1621	Open in IMG/M
3300001593\|JGI12635J15846_10439675	Not Available	779	Open in IMG/M
3300002245\|JGIcombinedJ26739_100043633	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	4049	Open in IMG/M
3300002245\|JGIcombinedJ26739_100475063	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300002245\|JGIcombinedJ26739_100591499	Not Available	986	Open in IMG/M
3300002245\|JGIcombinedJ26739_100631647	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300002245\|JGIcombinedJ26739_101059548	Not Available	697	Open in IMG/M
3300002245\|JGIcombinedJ26739_101767502	Not Available	519	Open in IMG/M
3300003219\|JGI26341J46601_10052372	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300003219\|JGI26341J46601_10062492	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300004152\|Ga0062386_100004396	All Organisms → cellular organisms → Bacteria → Proteobacteria	9752	Open in IMG/M
3300004152\|Ga0062386_100196573	All Organisms → cellular organisms → Bacteria → Proteobacteria	1586	Open in IMG/M
3300004152\|Ga0062386_101389246	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005434\|Ga0070709_10316244	Not Available	1144	Open in IMG/M
3300005435\|Ga0070714_102278052	Not Available	527	Open in IMG/M
3300005436\|Ga0070713_100369186	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300005437\|Ga0070710_10782494	Not Available	680	Open in IMG/M
3300005439\|Ga0070711_101068082	Not Available	695	Open in IMG/M
3300005439\|Ga0070711_101305339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	630	Open in IMG/M
3300005445\|Ga0070708_100635409	Not Available	1006	Open in IMG/M
3300005467\|Ga0070706_100433880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Abditibacteriota → unclassified Abditibacteriota → Abditibacteriota bacterium	1223	Open in IMG/M
3300005546\|Ga0070696_100510702	Not Available	957	Open in IMG/M
3300005764\|Ga0066903_106291907	Not Available	620	Open in IMG/M
3300005993\|Ga0080027_10176099	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	829	Open in IMG/M
3300006163\|Ga0070715_11001035	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300006175\|Ga0070712_100316595	Not Available	1268	Open in IMG/M
3300006175\|Ga0070712_100504299	Not Available	1015	Open in IMG/M
3300006175\|Ga0070712_101463198	Not Available	597	Open in IMG/M
3300006176\|Ga0070765_100244194	Not Available	1645	Open in IMG/M
3300006176\|Ga0070765_101018625	Not Available	783	Open in IMG/M
3300006176\|Ga0070765_102213742	Not Available	513	Open in IMG/M
3300009101\|Ga0105247_10577251	Not Available	830	Open in IMG/M
3300009176\|Ga0105242_12966616	Not Available	525	Open in IMG/M
3300009553\|Ga0105249_12063448	Not Available	643	Open in IMG/M
3300010048\|Ga0126373_10956351	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	921	Open in IMG/M
3300010339\|Ga0074046_10022768	All Organisms → cellular organisms → Bacteria → Proteobacteria	4365	Open in IMG/M
3300010343\|Ga0074044_10866904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300010361\|Ga0126378_10925245	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300010371\|Ga0134125_12442291	Not Available	568	Open in IMG/M
3300010379\|Ga0136449_100126407	All Organisms → cellular organisms → Bacteria	5111	Open in IMG/M
3300010396\|Ga0134126_12433892	Not Available	570	Open in IMG/M
3300011120\|Ga0150983_11078628	Not Available	548	Open in IMG/M
3300011271\|Ga0137393_10546344	Not Available	994	Open in IMG/M
3300012361\|Ga0137360_11636779	Not Available	549	Open in IMG/M
3300012362\|Ga0137361_10759496	Not Available	884	Open in IMG/M
3300012683\|Ga0137398_10826839	Not Available	647	Open in IMG/M
3300012957\|Ga0164303_10846810	Not Available	634	Open in IMG/M
3300012957\|Ga0164303_11102925	Not Available	573	Open in IMG/M
3300012957\|Ga0164303_11367799	Not Available	528	Open in IMG/M
3300012984\|Ga0164309_10564155	Not Available	883	Open in IMG/M
3300012989\|Ga0164305_10384678	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1069	Open in IMG/M
3300014968\|Ga0157379_10779058	Not Available	902	Open in IMG/M
3300015264\|Ga0137403_10340523	Not Available	1389	Open in IMG/M
3300020579\|Ga0210407_10302597	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1249	Open in IMG/M
3300020579\|Ga0210407_10502302	Not Available	948	Open in IMG/M
3300020579\|Ga0210407_10974570	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300020579\|Ga0210407_11098570	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300020580\|Ga0210403_11532178	Not Available	501	Open in IMG/M
3300020581\|Ga0210399_10982949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	681	Open in IMG/M
3300020583\|Ga0210401_10683895	Not Available	887	Open in IMG/M
3300021046\|Ga0215015_10967199	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1180	Open in IMG/M
3300021168\|Ga0210406_11158266	Not Available	565	Open in IMG/M
3300021168\|Ga0210406_11227297	Not Available	544	Open in IMG/M
3300021168\|Ga0210406_11293060	Not Available	526	Open in IMG/M
3300021170\|Ga0210400_11215205	Not Available	607	Open in IMG/M
3300021171\|Ga0210405_10166230	Not Available	1747	Open in IMG/M
3300021171\|Ga0210405_11182468	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus → Chthoniobacter flavus Ellin428	567	Open in IMG/M
3300021178\|Ga0210408_10014168	All Organisms → cellular organisms → Bacteria	6495	Open in IMG/M
3300021403\|Ga0210397_11282965	Not Available	569	Open in IMG/M
3300021405\|Ga0210387_11305773	Not Available	627	Open in IMG/M
3300021405\|Ga0210387_11455340	Not Available	588	Open in IMG/M
3300021406\|Ga0210386_11473864	Not Available	568	Open in IMG/M
3300021432\|Ga0210384_10300878	Not Available	1444	Open in IMG/M
3300021433\|Ga0210391_10319007	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1219	Open in IMG/M
3300021474\|Ga0210390_10046668	Not Available	3551	Open in IMG/M
3300021475\|Ga0210392_11491741	Not Available	505	Open in IMG/M
3300021478\|Ga0210402_11947796	Not Available	513	Open in IMG/M
3300021479\|Ga0210410_10185198	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1863	Open in IMG/M
3300021479\|Ga0210410_10584439	Not Available	993	Open in IMG/M
3300021479\|Ga0210410_10972775	Not Available	737	Open in IMG/M
3300021559\|Ga0210409_10278671	Not Available	1510	Open in IMG/M
3300022529\|Ga0242668_1159185	Not Available	502	Open in IMG/M
3300022720\|Ga0242672_1076112	Not Available	616	Open in IMG/M
3300025320\|Ga0209171_10617210	Not Available	520	Open in IMG/M
3300025898\|Ga0207692_10372478	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300025906\|Ga0207699_10060393	All Organisms → cellular organisms → Bacteria	2276	Open in IMG/M
3300025906\|Ga0207699_10461457	Not Available	912	Open in IMG/M
3300025906\|Ga0207699_10695081	Not Available	744	Open in IMG/M
3300025915\|Ga0207693_10126837	Not Available	2006	Open in IMG/M
3300025915\|Ga0207693_10476979	Not Available	974	Open in IMG/M
3300025928\|Ga0207700_10945549	Not Available	771	Open in IMG/M
3300027090\|Ga0208604_1017178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	686	Open in IMG/M
3300027565\|Ga0209219_1015758	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300027603\|Ga0209331_1099436	Not Available	711	Open in IMG/M
3300027635\|Ga0209625_1096766	Not Available	662	Open in IMG/M
3300027812\|Ga0209656_10006379	All Organisms → cellular organisms → Bacteria → Proteobacteria	7581	Open in IMG/M
3300027812\|Ga0209656_10010926	All Organisms → cellular organisms → Bacteria	5718	Open in IMG/M
3300027812\|Ga0209656_10091937	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1609	Open in IMG/M
3300027812\|Ga0209656_10231814	Not Available	881	Open in IMG/M
3300027825\|Ga0209039_10422174	Not Available	507	Open in IMG/M
3300027908\|Ga0209006_11040266	Not Available	649	Open in IMG/M
3300027908\|Ga0209006_11293908	Not Available	564	Open in IMG/M
3300027915\|Ga0209069_10704000	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300028047\|Ga0209526_10432417	Not Available	869	Open in IMG/M
3300029636\|Ga0222749_10391342	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300029636\|Ga0222749_10394856	Not Available	732	Open in IMG/M
3300031057\|Ga0170834_109001319	Not Available	725	Open in IMG/M
3300032160\|Ga0311301_10482420	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300032160\|Ga0311301_11494976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	833	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.61%
Host-Associated	Host-Associated	3.51%
Engineered	Engineered	0.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.09%
Aquatic	Environmental → Aquatic	10.53%
Plants	Host-Associated → Plants	3.51%
Solid Waste	Engineered → Solid Waste	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.09%
Freshwater	Environmental → Aquatic → Freshwater	8.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.51%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.88%
Sediment	Environmental → Aquatic → Sediment	0.88%
Grass	Engineered → Solid Waste → Grass	0.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.25%
Loam	Environmental → Terrestrial → Soil → Loam	34.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.51%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.63%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.88%
Composting	Engineered → Solid Waste → Grass → Composting	0.88%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.07%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.75%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.88%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.88%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.16%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.39%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.63%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.75%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.75%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.75%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.88%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.88%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.88%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027090	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF016 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRA_01833700	2124908009	Soil	MAPDLLISFVDGSTMTVTIAQRSPPLHKGARIRQISEDEAMILFECEDESILDVTIVDPGNKNNQVEYLG
F47_06605480	2170459009	Grass Soil	GSTMNIKIAESNSPPLHEGARIRQISEDRATIVIECEDDSVFDVTIVDPGSSVAVRDKNHQVEYLG
N57_08289680	2170459013	Grass Soil	NSLPLHEGARIRQVSEDQTTLLFECEDESTLDVTIVDPGNSVIVRDKNGQVEYLG
2ZMR_04109410	2170459016	Switchgrass, Maize And Mischanthus Litter	DCSELLISFVGGSTMMVKIEEFNSLPLREGARIRQISEDQVKLVIECEDGVTFDVRLVDPGSSVAVRDKSDMVEYLG
INPhiseqgaiiFebDRAFT_1008141912	3300000364	Soil	STMKIKIMESNSPPLREQAQIRTISEDRAKLLIECEDDSTFDVTLSEPGNAVSVRDKNNQVEYLG*
JGI1027J12803_1017287983	3300000955	Soil	MTVTIAECNSPPLHEGAKIRQISEDQTKLLFECEDDSTLDVTIVDPGNSVIFRDKNNQVEYLG*
JGI12635J15846_104396753	3300001593	Forest Soil	VDGSKMTVTIMECNSPPLKEGARIRQISEDQAELLFECEDESTLDVMIVDPGNSVIVRDSNNQVEYLG*
JGIcombinedJ26739_1000436335	3300002245	Forest Soil	MMKLKIVESNSPPLRESARICWISEDRAKLVIECEDDSTLDVTMVDPGNSGIVRAKNDVVEYLG*
JGIcombinedJ26739_1004750633	3300002245	Forest Soil	PLHEGARIRQISEDQAKLLFECEDNSTLDVTIVDPGNSVIVRDKNSQVEYLG*
JGIcombinedJ26739_1005914993	3300002245	Forest Soil	PLREGARIRQISEDQAKLLFECEDVSTLDVTVVDPGNSVSVRDKNNQVEYLG*
JGIcombinedJ26739_1006316472	3300002245	Forest Soil	LKEGARIRQISEDQAELLFECEDESTLDVMIVDPGNSVIVRDSNNQVEYLG*
JGIcombinedJ26739_1010595482	3300002245	Forest Soil	CNSPSLQEGARIRQISEDKAKLLFECEDDSTLDVTIVDPGNSVSVRDKNDQVEYLG*
JGIcombinedJ26739_1017675021	3300002245	Forest Soil	QISEDQAKLLFECEDESTLDLTIVDPGNSVIVRDKNSQVEYLG*
JGI26341J46601_100523722	3300003219	Bog Forest Soil	MFKISEDQAKLLIECKDESTLDVTLVDPGNSVSVRDKNDQVEYLG*
JGI26341J46601_100624923	3300003219	Bog Forest Soil	MLGSEDQAKLLFECEDDSTLDVTIVEPGNSVIVRDKNCQVEYLG*
Ga0062386_1000043967	3300004152	Bog Forest Soil	MVTIAKCNSLPLQEGARIRQISEDQTTPLFECEDEGILDVTIIDPGNSLIVRDKNGQVEYLG*
Ga0062386_1001965734	3300004152	Bog Forest Soil	GSTMKVKIVESNSPPLREGTRIRQVSENLAKLVIECEDDSKVDVTLVDPGNSVTVRDTNNQVEYLG*
Ga0062386_1013892461	3300004152	Bog Forest Soil	GSTMKVKIVESNSPPLREGTGIRQVSENLAKLVIECEDDSTVDVTLVDPGNSVTVRDKNNQVEYLG*
Ga0070709_103162441	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LINFVDGSKMTVTIAECNSPPLQEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0070714_1022780522	3300005435	Agricultural Soil	RQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0070713_1003691861	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	STMMIRIAECNSPPLQEGARIRQISEDGVKLLFECEDDSTLDLTIVEPGKSVIVRDKNRVSRINVGSLL*
Ga0070710_107824942	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	FVDGSTMAVTIAECNSPPLQEGASIRQISEDQAKLLFECEDDSTLDVTIVDPGDSVIVWDKNNRVE*
Ga0070711_1010680821	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RQVSEDQTTLLFECEDESALDVMIVDPGNSVIVRDKNNQVEYLG*
Ga0070711_1013053391	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NASVLLINFVDGSKMTVTIAECNSPPLHEGARIRQISEDQTKLLFECEDDSTLDVTIVDPGNSVILRDKNSRVEYLG*
Ga0070708_1006354092	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTVKIVESNSPPLREGARIRKISEDQAKLLFECEDDSTLDVTIVDPGNSVSVRDQNHHVEYLG*
Ga0070706_1004338802	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKVKIVESNSLPIREGARVREISEDQAKLFIECEDDSTIDLTVTDPGSSVGCSR*
Ga0070696_1005107023	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0066903_1062919071	3300005764	Tropical Forest Soil	MESNSPPLREQSHIQTISEDRAKLVIECEDDSTLDVTVVDPGNSVSVRDKNNQVEYLG*
Ga0080027_101760991	3300005993	Prmafrost Soil	MDMAELLISFVDGSTMTITIVECNSLPLHEGARIRQISEDEAKLLFECEDETTLDITIVDPGNSVIIRDNNNQVEYLG*
Ga0070715_110010352	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SLPLREGAKLRQIFEDQAKLLIECEDDSTLDVTLVDPGNSISVRDKEGQVEYLG*
Ga0070712_1003165951	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ELLISFVDGSTMTVIIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0070712_1005042992	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MDTKYERVAEVLINFVDGSKMTVTIAECNSPPIQEGARIRQISEDQTKLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLC*
Ga0070712_1014631982	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LISFADGSTMTVTIVECNSPPLHEGARIRQISEDEAMILFEFEDESTLDVTIVDPGNSVIVRDKNGQVEYLG*
Ga0070765_1002441941	3300006176	Soil	CNSPPLHEGARIRQISEYQTKLLFECEDDSTLDITIVDPGNSVIVRDKNNQVEYLG*
Ga0070765_1010186251	3300006176	Soil	MKIKIMESNSPPLRKQAQIRTISEDRAKLLIECEDDSTFDVTLSEPGNAVSVRDKNNQVEYLG*
Ga0070765_1022137422	3300006176	Soil	QTKLLFECEDDSTLDVTIVDPGNSVIVRDMNNQVEYLG*
Ga0105247_105772511	3300009101	Switchgrass Rhizosphere	EGARIRQISEDQTKLLFECEDDSTLDLTIVDPGNSVIIRDKGDGVEYLG*
Ga0105242_129666162	3300009176	Miscanthus Rhizosphere	DQTKLLFECEDDSTLGVTIIDPGNSVIGRDNQVDYLG*
Ga0105249_120634481	3300009553	Switchgrass Rhizosphere	ASELLISFVDGSKMTVTIAECNSPPLQEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0126373_109563512	3300010048	Tropical Forest Soil	FALGSLSAASELLISFIDGSTMKVKIVECNSPPLREGARIREISENLAKLVIECEDDSTIDVAVTDPSSSVAVRDKTYQVEYLE*
Ga0074046_100227685	3300010339	Bog Forest Soil	MKVKIVESNSPPLREGTRIRQVSENLAKLVIECEDDSKVDVTLVDPGNSVTVRDTNNQVEYLG*
Ga0074044_108669042	3300010343	Bog Forest Soil	MKVKIVESNSPPLHEGARIREISEDQAKLLFECEDDSELGVTIIDPGNSVSVRDKNNQIEYLGSKNSTHPLR
Ga0126378_109252452	3300010361	Tropical Forest Soil	MKVKIVECNSPPLREGARIREISENLAKLVIECEDDSTIDVAVTDPSSSVAVRDKTYQVEYLE*
Ga0134125_124422911	3300010371	Terrestrial Soil	GSTVKIKIVESNSPPLHQGARIRQISEDRVKLVIECEDESSIDVTLADPGASVAVRDKTYQVEYLG*
Ga0136449_1001264078	3300010379	Peatlands Soil	MTVTIVECNGPPLHEGAKIRQISEDQAKLLFECEDGSTLDVMIVEPGNSVIVRDRNNQVEYLG*
Ga0134126_124338921	3300010396	Terrestrial Soil	TKRYSARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0150983_110786281	3300011120	Forest Soil	EGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVEYLG*
Ga0137393_105463441	3300011271	Vadose Zone Soil	KLLFECEDDSTLDVTIVDPGNSAIVRDKNSQVEYLG*
Ga0137360_116367791	3300012361	Vadose Zone Soil	MTVNIVESNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG*
Ga0137361_107594962	3300012362	Vadose Zone Soil	MTVNIVESNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVEYLG*
Ga0137398_108268391	3300012683	Vadose Zone Soil	HEGARIRQISEDQTKLLFECEDDSTLDVTIVDLGNSVIVRDKNNQVVYLG*
Ga0164303_108468101	3300012957	Soil	EGARIRQISEDGTKLLLECEDDGTLDVTIVEPGNSVIIRDKNLGVEYLG*
Ga0164303_111029251	3300012957	Soil	SNSPPLHEGVRIRQISEDGAKLLFVCKDESTLDVTIVEPGNSVTVRDKNLGVEYLG*
Ga0164303_113677991	3300012957	Soil	TASSQISEDETKLFFECEDDSTLDVTIVDPGNSVILRDKNSRVEYLG*
Ga0164309_105641553	3300012984	Soil	DQTTLLFECEDESALDVMIVDPGNSVIVRDKNNQVEYLG*
Ga0164305_103846783	3300012989	Soil	FTRARIRQISEDETKLLFECEDDSTLDVTIVEPGNSVIVRDKNLGVEYLGWAAGCFDDDR
Ga0157379_107790581	3300014968	Switchgrass Rhizosphere	KIRQVSEDQTKLLFECEDDSTLDVTIVDPGNSVIFRDKNNQVEYLG*
Ga0137403_103405231	3300015264	Vadose Zone Soil	HEGVRIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0210407_103025971	3300020579	Soil	LREQAQIRTISEDRAKLLIECEDDSTFDVTLSEPGNAVSVRDKNNQVEYLG
Ga0210407_105023021	3300020579	Soil	QVSEDQTTLLFECEDESALDVTIVDPGNSVIVRDKNGQVEYLG
Ga0210407_109745701	3300020579	Soil	MTVTIEECNSPPLHEGAIIRQISEDQAKLLFECEDGSTLDVTTVDPGNSVIVRDKGGQVEYLG
Ga0210407_110985701	3300020579	Soil	RKVKIVESNSPPLREGGRIREISEDQAELLLECEDDSIFDVTIVDPGDSVIVRDKNGQVEFLG
Ga0210403_115321782	3300020580	Soil	TMTVTIAGCNSLPLHEGARIRLVSEDQTTLLFECEDESILDVTILDPGNSVIVRDKNGQVEYLG
Ga0210399_109829492	3300020581	Soil	MTVTIAECNSLPLHEGARIGQVSEDQTTLLFECEDESILDVTIVDPGNSVIVRDKNGQVEYLG
Ga0210401_106838953	3300020583	Soil	QISDDQTKLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLG
Ga0215015_109671992	3300021046	Soil	MMKLKIVESNSPALRESARICWISEDRTKLVIECEDDSTLDVTMVDPGNSGIVRAKNDVVEYLG
Ga0210406_111582661	3300021168	Soil	MTLTIAECNNPPLHERVRIRQVSEDQTTLLFECDGSILDVTIVDPRNSVIVRDKNGQVEYLG
Ga0210406_112272972	3300021168	Soil	ISEDQTTLLFECEDESILDVTIIDPGNSVIVRDKNGQVEYLG
Ga0210406_112930602	3300021168	Soil	MISFVDGSTMTVTIAECNSPPLHEGSRIRQISEDGAKLLFECEDDSTLDVTIVDPGNSVIVRDKNLGVEYLG
Ga0210400_112152051	3300021170	Soil	MINFVDCSKMTVTIAECNSPPLQEGARIRQVSEDQTKLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLG
Ga0210405_101662301	3300021171	Soil	RIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0210405_111824682	3300021171	Soil	VKIAECNSLPLHAGARIRQISEDQAKLLFECEDESTLDVTIVDPGNSVMVREKNGQVEYL
Ga0210408_100141681	3300021178	Soil	EGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0210397_112829653	3300021403	Soil	IRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNGQVEYLG
Ga0210387_113057731	3300021405	Soil	EDQTTLLFECDGSILDVTIVDPRNSVIVRDKNGQVEYLG
Ga0210387_114553401	3300021405	Soil	SEDQTTLLFECEDESVLDVTIVDPGNSVIVRDKNGQ
Ga0210386_114738642	3300021406	Soil	TIAECNSLPLHEGARIRQVSEDQTTLLFECEDESILDVTIVDPGNSVIVRDKNGQVEYLG
Ga0210384_103008781	3300021432	Soil	ISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0210391_103190073	3300021433	Soil	QLNASELLISFVDGSTMTVKIAECNSLPLHAGARIRQISEDQAKLLFECEDESTLDVTIVDPGNSVMVREKNGQVEYLG
Ga0210390_100466686	3300021474	Soil	PELLISFFDGSTMTVTIAECNSLPFHEGARIPQISEDGAKLLFECEHDSTLDVTTVDSGELGDVRDKNNLVDYLV
Ga0210392_114917411	3300021475	Soil	SEDQTTLLFECEDESALDVTIVDPGNSVIVRDKNGQAEYLG
Ga0210402_119477962	3300021478	Soil	MMTLTIAERNSLPLHEGVRIRRVSEDQTTLLFECEDESILDVTILDPGNSVIVRDKNGQVEYLG
Ga0210410_101851981	3300021479	Soil	GARIRQISEDQAKLLFECEDESTLDVTIVDPGNSVMVREKNGQVEYLG
Ga0210410_105844391	3300021479	Soil	PPLHEGARIRQISGDQTKLLFECEDDSTLDLTIVDPGNSVIVRDKNNQVEYLG
Ga0210410_109727752	3300021479	Soil	SFVGGSKMTVTIAECNSPPLQEGARIRQISEDQTKLLFECEDDSTLDVTIVDPGNSVIVRDKNNQVEYLG
Ga0210409_102786713	3300021559	Soil	REGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0242668_11591851	3300022529	Soil	AECNSPPLHERARIRQISEDQTKLLFECEDDSTLDLTIVDPGNSVIVRDKNNQVEYLG
Ga0242672_10761121	3300022720	Soil	VNGSELLIRFVDGSMKTLTIAERNSLPLHEGVRIRRVSEDQTTLLFECEDESILDVTILDPGNSGIVRDKNGQVEYLG
Ga0209171_106172101	3300025320	Iron-Sulfur Acid Spring	VIIVESNSPPLREGARMRQISEDQAKLLFECEDGSTLDLTVVDPGNSVSVRDKNDHVEYL
Ga0207692_103724782	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTVTIAECNSLPLHEGARIRQVSDDQTTLLFECEDESILDVTIVDPGNSVIVRDKNGQVEYLG
Ga0207699_100603932	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LLISFVDGSSMTVTIAECNSLPLHEGARIRQVSEDQTTLLFECEDESILDVTIVDSGNSVIVRDKKGQVEYLG
Ga0207699_104614573	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	SPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG
Ga0207699_106950811	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSTMLTMAVTIAESNSPPLKEGIRQSSEDQAKLLFECEDDSTLDVTIVDPGDSVIVWDKNNLVEYLG
Ga0207693_101268376	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG
Ga0207693_104769792	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MDTKYERVAEVLINFVDGSKMTVTIAECNSPPLQEGASIRQISEDQAKLLFECEDDSTLDVTIVDPGDSVIVWDKNNLVEYLG
Ga0207700_109455491	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	TKRYSARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG
Ga0208604_10171781	3300027090	Forest Soil	MKVKIADCNSPQLREGARIREISKDRVKLVIECKDDSTIDVTLAAPGASVAV
Ga0209219_10157585	3300027565	Forest Soil	NSPPLHEGARIRQISEDQAKLLFECEDNSTLDVTIVDPGNSVIVRDKNSQVEYLG
Ga0209331_10994361	3300027603	Forest Soil	SFVDASTMTVTIAECNSPPLHEGARIRQISEDKAKILIECEDDSTLDVTIVDPGNSVSVRDKNDVVEYLG
Ga0209625_10967661	3300027635	Forest Soil	NAGQDLTSTASSQISEDETKLFFECEDESTLDVTIVDPGNSVILRDKNNQVEYLG
Ga0209656_100063794	3300027812	Bog Forest Soil	MKVKIVESNSPPLREGTRIRQVSENLAKLVIECEDDSKVDVTLVDPGNSVTVRDTNNQVEYLG
Ga0209656_1001092610	3300027812	Bog Forest Soil	MFKISEDQAKLLIECKDESTLDVTLVDPGNSVSVRDKNDQVEYLG
Ga0209656_100919373	3300027812	Bog Forest Soil	MVTIAKCNSLPLQEGARIRQISEDQTTPLFECEDEGILDVTIIDPGNSLIVRDKNGQVEYLG
Ga0209656_102318142	3300027812	Bog Forest Soil	MLGSEDQAKLLFECEDDSTLDVTIVEPGNSVIVRDKNCQVEYLG
Ga0209039_104221741	3300027825	Bog Forest Soil	REGARIRQITEDRAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Ga0209006_110402661	3300027908	Forest Soil	NSPPLHEGARIRQISEEEAKILVECEDDSTLDVTIVDPGNSVIVRDKNNLVEYLG
Ga0209006_112939082	3300027908	Forest Soil	LLHEGARIRQISEDETKLQFECEDDSTLYVTIIEPGNSVIVRDKNNQVEYLG
Ga0209069_107040002	3300027915	Watersheds	PELLISFFDRSTMTVTIVECNSLPLQEGARIHQISEDGAKLLFECEDESILDVTIVDPGNSVIVRDKNLGVEYLG
Ga0209526_104324171	3300028047	Forest Soil	GARIRKISEDQAKLLFECEDESTLDLTIVDPGNSVIVRDKNSQVEYLG
Ga0222749_103913422	3300029636	Soil	REGGRIREISEDQAELLLECEDDSIFDVTIVDPGDSVIVRDKNGQVEFLG
Ga0222749_103948561	3300029636	Soil	TMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0170834_1090013191	3300031057	Forest Soil	QISEDQTTLLFECEDESVLDVTIVDPGNSVIVRDKNGQVEYLG
Ga0311301_104824203	3300032160	Peatlands Soil	MTVTIVECNGPPLHEGAKIRQISEDQAKLLFECEDGSTLDVMIVEPGNSVIVRDRNNQVEYLG
Ga0311301_114949761	3300032160	Peatlands Soil	STMKIKIAEANSPPLDEGARIRQVSEDRATIVIECEDDSVFDVTIVDPGNSVSVRDRNDQVEYLG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F081787

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences