Metagenome Family F081925

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F081925
Family Type	Metagenome
Number of Sequences	114
Average Sequence Length	82 residues
Representative Sequence	VSKTYGKVSIAVGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVGGERQKSRRRVSFGFLGAALVLLAIALALFRS
Number of Associated Samples	56
Number of Associated Scaffolds	114

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	14.04 %
% of genes near scaffold ends (potentially truncated)	20.18 %
% of genes from short scaffolds (< 2000 bps)	65.79 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.018 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (14.912 % of family members)
Environment Ontology (ENVO)	Unclassified (31.579 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (34.211 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.06% β-sheet: 0.00% Coil/Unstructured: 36.94%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 114 Family Scaffolds
PF07690	MFS_1	5.26
PF15919	HicB_lk_antitox	4.39
PF13561	adh_short_C2	2.63
PF03480	DctP	2.63
PF00145	DNA_methylase	2.63
PF01381	HTH_3	2.63
PF12799	LRR_4	2.63
PF00206	Lyase_1	1.75
PF13847	Methyltransf_31	1.75
PF01326	PPDK_N	1.75
PF01435	Peptidase_M48	1.75
PF01850	PIN	1.75
PF07927	HicA_toxin	1.75
PF02899	Phage_int_SAM_1	1.75
PF00106	adh_short	0.88
PF10543	ORF6N	0.88
PF04255	DUF433	0.88
PF14698	ASL_C2	0.88
PF14691	Fer4_20	0.88
PF05683	Fumerase_C	0.88
PF01927	Mut7-C	0.88
PF05173	DapB_C	0.88
PF00890	FAD_binding_2	0.88
PF01936	NYN	0.88
PF01061	ABC2_membrane	0.88
PF10130	PIN_2	0.88
PF07581	Glug	0.88
PF13649	Methyltransf_25	0.88
PF12697	Abhydrolase_6	0.88
PF04014	MazE_antitoxin	0.88
PF13237	Fer4_10	0.88

COG ID	Name	Functional Category	% Frequency in 114 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	2.63
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	1.75
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	1.75
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	1.75
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	1.75
COG0289	4-hydroxy-tetrahydrodipicolinate reductase	Amino acid transport and metabolism [E]	0.88
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.88
COG1656	Uncharacterized conserved protein, contains PIN-related Mut7-C RNAse domain	General function prediction only [R]	0.88
COG1838	Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain	Energy production and conversion [C]	0.88
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.02 %
Unclassified	root	N/A	42.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	27.19 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	7.89 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	4.39 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chloroflexi bacterium RBG_13_51_36	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	6.14 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	3.51 %
Chloroflexi bacterium RBG_19FT_COMBO_47_15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_15	1.75 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.88 %
unclassified Anaerolineae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae	0.88 %
Dehalogenimonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.98 %
Chloroflexi bacterium RBG_13_51_36	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	6.14 %
Dehalococcoidia bacterium SG8_51_3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium SG8_51_3	2.63 %
Chloroflexi bacterium RBG_19FT_COMBO_47_15	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_15	1.75 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.88 %
Dehalogenimonas lykanthroporepellens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	0.88 %
Anaerolineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	0.88 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.88 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001335\|ML8_10001074	All Organisms → cellular organisms → Bacteria	23973	Open in IMG/M
3300001371\|BBDRAFT_10342777	Not Available	1941	Open in IMG/M
3300001371\|BBDRAFT_10362405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2443	Open in IMG/M
3300001371\|BBDRAFT_10380221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1045	Open in IMG/M
3300001533\|MLSed_10119008	All Organisms → cellular organisms → Bacteria	1648	Open in IMG/M
3300001751\|JGI2172J19969_10046585	Not Available	1449	Open in IMG/M
3300004481\|Ga0069718_15934209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	562	Open in IMG/M
3300005820\|Ga0078747_109767	All Organisms → cellular organisms → Bacteria	2479	Open in IMG/M
3300005832\|Ga0074469_10143468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	695	Open in IMG/M
3300005832\|Ga0074469_10468398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	547	Open in IMG/M
3300005832\|Ga0074469_10469994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1559	Open in IMG/M
3300005832\|Ga0074469_10694594	All Organisms → cellular organisms → Bacteria	5259	Open in IMG/M
3300005832\|Ga0074469_11229324	Not Available	600	Open in IMG/M
3300005832\|Ga0074469_11229359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	600	Open in IMG/M
3300007900\|Ga0111031_1026242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	8799	Open in IMG/M
3300008517\|Ga0111034_1003543	Not Available	1092	Open in IMG/M
3300009509\|Ga0123573_10075414	All Organisms → cellular organisms → Bacteria	3507	Open in IMG/M
3300009509\|Ga0123573_10077440	All Organisms → cellular organisms → Bacteria	3453	Open in IMG/M
3300009509\|Ga0123573_10116039	All Organisms → cellular organisms → Bacteria	2717	Open in IMG/M
3300009509\|Ga0123573_10116592	All Organisms → cellular organisms → Bacteria	2709	Open in IMG/M
3300009509\|Ga0123573_10572158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1070	Open in IMG/M
3300010412\|Ga0136852_11152337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	737	Open in IMG/M
3300010413\|Ga0136851_10001609	All Organisms → cellular organisms → Bacteria	27721	Open in IMG/M
3300010413\|Ga0136851_10003999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	17853	Open in IMG/M
3300010413\|Ga0136851_10074045	All Organisms → cellular organisms → Bacteria	3644	Open in IMG/M
3300010413\|Ga0136851_10153879	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300011118\|Ga0114922_10750113	Not Available	799	Open in IMG/M
3300011118\|Ga0114922_10950117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	699	Open in IMG/M
3300011118\|Ga0114922_11243279	Not Available	601	Open in IMG/M
3300011118\|Ga0114922_11660400	Not Available	513	Open in IMG/M
3300012931\|Ga0153915_10065671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3764	Open in IMG/M
3300012931\|Ga0153915_10212588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_15	2127	Open in IMG/M
3300012931\|Ga0153915_11338738	Not Available	837	Open in IMG/M
3300012931\|Ga0153915_11789813	Not Available	719	Open in IMG/M
3300012931\|Ga0153915_12058352	Not Available	668	Open in IMG/M
3300012964\|Ga0153916_10279440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_19FT_COMBO_47_15	1698	Open in IMG/M
3300012964\|Ga0153916_11213534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	833	Open in IMG/M
3300012964\|Ga0153916_11444033	Not Available	764	Open in IMG/M
3300012964\|Ga0153916_11765365	Not Available	691	Open in IMG/M
3300017963\|Ga0180437_10060183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3450	Open in IMG/M
3300017963\|Ga0180437_10061095	All Organisms → cellular organisms → Bacteria	3415	Open in IMG/M
3300017963\|Ga0180437_10109156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2320	Open in IMG/M
3300017963\|Ga0180437_10336867	Not Available	1139	Open in IMG/M
3300017963\|Ga0180437_11103930	Not Available	566	Open in IMG/M
3300017971\|Ga0180438_10024756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6363	Open in IMG/M
3300017971\|Ga0180438_10105096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2410	Open in IMG/M
3300017971\|Ga0180438_10125067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2147	Open in IMG/M
3300017971\|Ga0180438_10288436	Not Available	1268	Open in IMG/M
3300017971\|Ga0180438_10375498	Not Available	1081	Open in IMG/M
3300017971\|Ga0180438_10577158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium SG8_51_3	834	Open in IMG/M
3300017971\|Ga0180438_11183009	Not Available	551	Open in IMG/M
3300018018\|Ga0187886_1090111	Not Available	1299	Open in IMG/M
3300018064\|Ga0187773_10285486	Not Available	915	Open in IMG/M
3300018080\|Ga0180433_10590505	Not Available	835	Open in IMG/M
3300018080\|Ga0180433_10902881	Not Available	648	Open in IMG/M
3300018080\|Ga0180433_11152726	Not Available	563	Open in IMG/M
3300018088\|Ga0187771_10256205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	1460	Open in IMG/M
3300018088\|Ga0187771_10560770	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300018089\|Ga0187774_10227571	Not Available	1040	Open in IMG/M
3300018089\|Ga0187774_10586300	Not Available	719	Open in IMG/M
3300022208\|Ga0224495_10001403	All Organisms → cellular organisms → Bacteria	17054	Open in IMG/M
3300022208\|Ga0224495_10100576	All Organisms → cellular organisms → Bacteria → PVC group	1266	Open in IMG/M
3300022208\|Ga0224495_10331383	Not Available	608	Open in IMG/M
3300022221\|Ga0224506_10135986	Not Available	1163	Open in IMG/M
3300022309\|Ga0224510_10095257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1695	Open in IMG/M
3300027888\|Ga0209635_10109070	Not Available	2269	Open in IMG/M
3300027901\|Ga0209427_10887310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	621	Open in IMG/M
3300027901\|Ga0209427_10919566	Not Available	606	Open in IMG/M
3300027917\|Ga0209536_101713278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium SG8_51_3	760	Open in IMG/M
3300027917\|Ga0209536_102031061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	688	Open in IMG/M
3300027917\|Ga0209536_102083929	Not Available	678	Open in IMG/M
3300027917\|Ga0209536_102106354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium SG8_51_3	674	Open in IMG/M
3300027917\|Ga0209536_102954414	Not Available	549	Open in IMG/M
3300029827\|Ga0134606_10239155	Not Available	558	Open in IMG/M
3300030613\|Ga0299915_10000627	All Organisms → cellular organisms → Bacteria	26548	Open in IMG/M
3300030613\|Ga0299915_10025883	All Organisms → cellular organisms → Bacteria	4392	Open in IMG/M
3300031356\|Ga0307439_1198456	Not Available	519	Open in IMG/M
3300031360\|Ga0307444_1139240	Not Available	730	Open in IMG/M
3300031554\|Ga0315544_1009832	All Organisms → cellular organisms → Bacteria	5132	Open in IMG/M
3300031624\|Ga0315545_1031655	All Organisms → cellular organisms → Bacteria	3112	Open in IMG/M
3300031652\|Ga0315553_10021467	All Organisms → cellular organisms → Bacteria	4065	Open in IMG/M
3300031665\|Ga0316575_10171426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_13_51_36	900	Open in IMG/M
3300031691\|Ga0316579_10090664	Not Available	1460	Open in IMG/M
3300031707\|Ga0315291_10017972	All Organisms → cellular organisms → Bacteria	8470	Open in IMG/M
3300031707\|Ga0315291_10115741	All Organisms → cellular organisms → Bacteria	2864	Open in IMG/M
3300031707\|Ga0315291_10279974	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300031707\|Ga0315291_11080974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	667	Open in IMG/M
3300031772\|Ga0315288_10007429	All Organisms → cellular organisms → Bacteria	13878	Open in IMG/M
3300031772\|Ga0315288_10014038	All Organisms → cellular organisms → Bacteria	10002	Open in IMG/M
3300031772\|Ga0315288_10086223	All Organisms → cellular organisms → Bacteria	3627	Open in IMG/M
3300031772\|Ga0315288_10172527	All Organisms → cellular organisms → Bacteria	2381	Open in IMG/M
3300031772\|Ga0315288_10326657	Not Available	1589	Open in IMG/M
3300031885\|Ga0315285_10185426	Not Available	1680	Open in IMG/M
3300031999\|Ga0315274_10015739	All Organisms → cellular organisms → Bacteria	10704	Open in IMG/M
3300032053\|Ga0315284_10956832	Not Available	970	Open in IMG/M
3300032062\|Ga0315551_10246466	Not Available	700	Open in IMG/M
3300032156\|Ga0315295_11731418	Not Available	595	Open in IMG/M
3300032173\|Ga0315268_11415842	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300032342\|Ga0315286_10057684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium	4113	Open in IMG/M
3300033414\|Ga0316619_11247619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	658	Open in IMG/M
3300033414\|Ga0316619_11814378	Not Available	553	Open in IMG/M
3300033416\|Ga0316622_100500061	Not Available	1385	Open in IMG/M
3300033480\|Ga0316620_10652858	Not Available	995	Open in IMG/M
3300033489\|Ga0299912_10007345	All Organisms → cellular organisms → Bacteria	9098	Open in IMG/M
3300033489\|Ga0299912_10011189	All Organisms → cellular organisms → Bacteria	7528	Open in IMG/M
3300033493\|Ga0316631_10118656	Not Available	954	Open in IMG/M
3300033513\|Ga0316628_101912669	Not Available	789	Open in IMG/M
3300033513\|Ga0316628_102559954	Not Available	673	Open in IMG/M
3300033991\|Ga0334965_0002084	All Organisms → cellular organisms → Bacteria	14165	Open in IMG/M
3300033991\|Ga0334965_0087391	Not Available	1401	Open in IMG/M
3300034078\|Ga0373900_033223	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300034078\|Ga0373900_127350	Not Available	508	Open in IMG/M
3300034085\|Ga0373908_120041	Not Available	529	Open in IMG/M
3300034191\|Ga0373909_0286756	Not Available	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.74%
Engineered	Engineered	3.51%
Host-Associated	Host-Associated	1.75%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	80.70%
Terrestrial	Environmental → Terrestrial	14.04%
Bioremediation	Engineered → Bioremediation	3.51%
Plants	Host-Associated → Plants	1.75%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	28.07%
Freshwater	Environmental → Aquatic → Freshwater	25.44%
Sediment	Environmental → Aquatic → Sediment	14.04%
Soil	Environmental → Terrestrial → Soil	14.04%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	13.16%
Metal	Engineered → Bioremediation → Metal	3.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.75%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	14.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.04%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	13.16%
Oceanic	Environmental → Aquatic → Marine → Oceanic	11.40%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.53%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.77%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	7.89%
Sediment	Environmental → Aquatic → Marine → Sediment	4.39%
Coastal	Environmental → Aquatic → Marine → Coastal	3.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.51%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	3.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.88%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	14.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.04%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	13.16%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	11.40%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.53%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.26%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	4.39%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	3.51%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	3.51%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	2.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.75%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.88%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.88%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.88%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	14.91%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	13.16%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	8.77%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	7.89%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	7.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.14%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	5.26%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	4.39%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.39%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	3.51%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	3.51%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	3.51%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	3.51%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	2.63%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.88%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.88%
Benthic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Benthic	0.88%
Wetlands Benthic	Environmental → Aquatic → Marine → Wetlands → Unclassified → Wetlands Benthic	0.88%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001335	Wetlands benthic microbial communities from British Columbia, Canada - ML8	Environmental	Open in IMG/M
3300001371	Baker-B-sed	Environmental	Open in IMG/M
3300001533	Benthic freshwater microbial communities from British Columbia, Canada	Environmental	Open in IMG/M
3300001751	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005820	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 75 cmbsf, PM2	Environmental	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300007900	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1	Environmental	Open in IMG/M
3300008517	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4	Environmental	Open in IMG/M
3300009509	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_11	Environmental	Open in IMG/M
3300010412	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_10	Environmental	Open in IMG/M
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300017963	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG	Environmental	Open in IMG/M
3300017971	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_2 metaG	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022221	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_8_1	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027901	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300029827	Marine sediment microbial communities from Barataria Bay, New Orleans, USA to study impact of Deep Water Horizon explosion - M1047	Environmental	Open in IMG/M
3300030613	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227	Environmental	Open in IMG/M
3300031356	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-90	Environmental	Open in IMG/M
3300031360	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40	Environmental	Open in IMG/M
3300031554	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-130	Environmental	Open in IMG/M
3300031624	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-10	Environmental	Open in IMG/M
3300031652	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40	Environmental	Open in IMG/M
3300031665	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3	Host-Associated	Open in IMG/M
3300031691	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA	Host-Associated	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032062	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-90	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033991	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact	Environmental	Open in IMG/M
3300034078	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.1	Engineered	Open in IMG/M
3300034085	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B3A4.3	Engineered	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ML8_1000107426	3300001335	Wetlands Benthic	VSKTYARVGIALGVILLFIGALDARGHYGVWAASWVLLGLFLILFGSSFFVRAERQKLTRRVSFGFLGVGVVLLVIALVFFRS*
BBDRAFT_103427773	3300001371	Marine Estuarine	VSKTYGMVSIALGFVFLFAGALDVRGHFGIWAASSILLGLFLILFGASFVGGGPRQKVTRRVSFGFLGAALVLLAIALARFV*
BBDRAFT_103624052	3300001371	Marine Estuarine	MPDSVLFWLTPGFRNAKFCSVSRTWGKVSIAVGFLLLFAGALDARQHFGIWATFSIMLGLFLVLFGASFVSRTTRQKTTRRVSFGFLGAALILLGVALALSLS*
BBDRAFT_103802212	3300001371	Marine Estuarine	MSKTWGKVSIAAGFLLLFAGALDMRQGLGIWAAFSIMLGLFLVLFGASYVGRGPRQKDTRRVSFGFLGAAVILLGIVLALSLS*
MLSed_101190082	3300001533	Benthic	LTPAFPGARFRSVSKTYARVGIALGVILLFIGALDARGHYGVWAASWVLLGLFLILFGSSFFVRAERQKLTRRVSFGFLGVGVVLLVIALVFFRS*
JGI2172J19969_100465852	3300001751	Marine Sediment	MVSILLGLIFLFAGALDVRGQFGIWAASSIMLGLFLIVFGASFLVGAGRRKSTRRLSFGFAGAALVFLAIALAQFVS*
Ga0069718_159342091	3300004481	Sediment	VSKTWGKVSIAVGFLLLFAGALDVRQHYGIWAASSILFGLFLILLGASFVGGGPRQKTTRRVSFGFLGAALVFLGIALARFL*
Ga0078747_1097673	3300005820	Marine Sediment	VSKTYGRVSIGVGLVFLFVGAMDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLAAALVFLGIALALFRS*
Ga0074469_101434682	3300005832	Sediment (Intertidal)	VSKTWGKVSIAAGFLLLFAGALDMRQGLGIWAAFSIMLGLFLVLFGASFVSRTTRQKTTRRVSFGFLGAALILLGIVLALSLS*
Ga0074469_104683981	3300005832	Sediment (Intertidal)	MSRTWGKVSIAVGFLLLFAGALDARQHFGIWATFSIMLGLFLVLFGASFVSRTTRQKTTRRVSFGFLGAALILLGVALALSLS*
Ga0074469_104699941	3300005832	Sediment (Intertidal)	GFLLLFAGALDMRQGLGIWAAFSIMLGLFLVLFGASYVGRGPRQKDTRRVSFGFLGAAVILLGIVLALSLS*
Ga0074469_106945944	3300005832	Sediment (Intertidal)	VSKTYGRISIGLGFVFLFAGALDTRGGFGVWAASSIMLGLFLIVFGTSFFVSDGRQKARRRVSFGFLGAAVVLLGIALALF*
Ga0074469_112293241	3300005832	Sediment (Intertidal)	VSKTWGKVGIAVGFLLLLAGALDVRQHFAIWAASSILLGLFLIVFGTSFFVSDKRRKVRRRVSFGFLGAALVLLAIALARFV*
Ga0074469_112293591	3300005832	Sediment (Intertidal)	MVSIALGFVFLFAGALDVRGHFGIWAASSILLGLFLILFGASFVGGGPRQKTTRRVSFGFLGAALVVLAIALARFV*
Ga0111031_10262422	3300007900	Marine Sediment	VGLVFLFVGAMDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLAAALVFLGIALALFRS*
Ga0111034_10035432	3300008517	Marine Sediment	MPDSVLFWLTPGLLSAKFCFMSRTWAKVGIAIGFLLLFTGALDVRQHFGIWAAFSILLGLFLVLFSASFVSRTTRQKTTRRVSFGFLGVAVILLVIALAPSLS*
Ga0123573_100754142	3300009509	Mangrove Sediment	MPCSVVLWLTPGFWSAKFCSVSNKTWGMVSIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLILFGASFVSRDTREKTTRRVSFGFLGAALVLLVIALVPLLS*
Ga0123573_100774402	3300009509	Mangrove Sediment	VSRSYGAVSIGLGVVFVFVGALDARGGFGVWAGSSIMFGLFLIVFGASFLVSDERRKSRRRLSFWFLGAAAVLLAIALALLR*
Ga0123573_101160392	3300009509	Mangrove Sediment	MVSIGLGVVFVFVGALDARGGFGVWAGSSIMFGLFLIVFGTSFLVSDERRKSRRRLSFWFLGAAAVLLTIALALFRS*
Ga0123573_101165922	3300009509	Mangrove Sediment	MPASVVLWLTPGFWSAKFCSVSNKTWGMVGIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLILFGASFVSRDPRQKTTRRVSFGFLGAALILLVIALVPLLS*
Ga0123573_105721581	3300009509	Mangrove Sediment	MPGSVVLWLTPGFWSAKFCSVSNKTWGKVSIAIGFLLLFAGALDVRQNFGIWAAFSILLGLFLIIFGASFVSRDPRQKTTRRVSFGFLGAALIVLVIALVPLLS*
Ga0136852_111523372	3300010412	Mangrove Sediment	MPGSVVLWLTPGFWSAKFCSVSNKTWGMVGIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLILFGASFVSRDPRQKTTRRVSFGFLGAALILLVIALVPLLS*
Ga0136851_100016093	3300010413	Mangrove Sediment	VSRSYGAVSIGLGVVFVFVGALDARGGFGVWAGSSIMFGLFLIVFGTSFLVSDERRKSRRRLSFWFLGAAAVLLAIALALLR*
Ga0136851_100039997	3300010413	Mangrove Sediment	MRKTWAKVGIGIGFVFLFIGALDVRQHFGVWAAASILLGLFLIVFGASFISRTSRKKTTRRVSFGFLGAALVFLAIALVPLLS*
Ga0136851_100740452	3300010413	Mangrove Sediment	MTNISSKTWGKASIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLILFGASFVSRDTREKTTRRVSFGFLGAALIFLVIALVPILS*
Ga0136851_101538791	3300010413	Mangrove Sediment	MVSIGLGVVFVFVGALDARGGFGVWAGSSIMFGLFLIVFGTSFLVSDERRKSRRRLSFWFLGAAAVLLAIALALFRS*
Ga0114922_107501132	3300011118	Deep Subsurface	MSRTWAKVGIAIGFLLLFAGALDVRQHFGIWAAFSILLGLFLVLFSASFVSRTTRQKTTRRVSFGFLGVAVILLVIALAPSLS*
Ga0114922_109501171	3300011118	Deep Subsurface	MSRTWGKVSIAVGFLLLFAGALDARQHLGIWATFSILLGLFLVLFGASIVGGGPRQKTTRRVSFGFLGAALIFLGIALALSLS*
Ga0114922_112432791	3300011118	Deep Subsurface	MSKTWGKVSIAIGFLLLFAGALDMRQGLGIWAAFSIMLGLFLVLFGASFVSGRSRQKPTRRVSFAFLGAAVILLGIALALSLS*
Ga0114922_116604001	3300011118	Deep Subsurface	MASIAIGFLLLFAGALDLRQHFGIWATFSILLGLFLVLFGGSFVSRDPRQKTARRVSFGFLGAALVLLVIALATQS*
Ga0153915_100656712	3300012931	Freshwater Wetlands	VSKTYGKVSIAVGFLLLFAGALDVRQHFGIWAASSILLGLSLIVFGASLFVSGELQKVRRRVSFGFLGAALVLLAIALALLQS*
Ga0153915_102125883	3300012931	Freshwater Wetlands	VSKSFAKVGIALGVVFLFIGAMDVRQHFGVWGASSILFGLFLIGFGASLFVRPERKKITRRVSFGLLGAGLVLLAIALATTS*
Ga0153915_113387381	3300012931	Freshwater Wetlands	VSKTYGSVSIGLGFAFLFAGALDIRAHAGIWAAFSILLGLSLIVFGASFFASGELQKVRRRVSFGFLGAALVLLAIALALFLS*
Ga0153915_117898131	3300012931	Freshwater Wetlands	FAGALDVRQHFPIWAASSILFGLFLIVFGASFFASGERQKARRRVSFGFLAAALVLLAIALALFRS*
Ga0153915_120583521	3300012931	Freshwater Wetlands	VSKTYGKVSIAIGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVSGERQRFRRRVSFGFLGAALVLLAIALALFRS*
Ga0153916_102794401	3300012964	Freshwater Wetlands	VSKSFARVGIALGVVFLFIGAMDVRQHFGVWGAASILLGLFLIAFGSSLFVRAERKELTRRVSFGFLGVALVLLAIALATTS*
Ga0153916_112135341	3300012964	Freshwater Wetlands	VSKSYGKVSIAIGFLLLFAGALDVRQHFPIWAASSILFGLFLIIFGASFFVSGERQKSRRRVSFGILGAALVLLAIALALFRS*
Ga0153916_114440331	3300012964	Freshwater Wetlands	VSKTYGKVSIAIGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVSGESQRFRRRVSFGILGAALVVLAIALALFRS*
Ga0153916_117653652	3300012964	Freshwater Wetlands	AVGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGATFFVSGERQKFRRRVSFGFLAASLVLLAVALALFRS*
Ga0180437_100601832	3300017963	Hypersaline Lake Sediment	VSKTYGRVSIGLGFVFLFVGALDARGGFGVWAASSIMLGLFLVVVGTSFFVTDERRKSRRRLSFGFLGAAAVLLVIALALFR
Ga0180437_100610955	3300017963	Hypersaline Lake Sediment	MVSIGVGFVFLFVGALDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKARRRLSFWFLGAAVVLLGIALALLRP
Ga0180437_101091563	3300017963	Hypersaline Lake Sediment	VSKTYGRVSIGVGFVFLFIGALDVRGGFGVWAASSIMLGLFLVVFGTSFFVSDERQKARRRLSFGFLGAALVLLVIALALFRS
Ga0180437_103368671	3300017963	Hypersaline Lake Sediment	VSNKTWGKVGIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLIVFGASFVSRAPSQKTTRRVSFGFLGAAVILLVIALATQS
Ga0180437_111039301	3300017963	Hypersaline Lake Sediment	LTRGYRSAKFRSVSKTYGRVSIGVGFVFLFIGALDVRGGFGVWAASSIMLGLFLVVFGTSFFVSGERQKSRRRLSFGFLGAALVFLCIALALFRS
Ga0180438_100247562	3300017971	Hypersaline Lake Sediment	VSNKTWGKVTIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLILFGASFVSRAPSQKTTRRVSFGFLGAAVILLVIALATQS
Ga0180438_101050962	3300017971	Hypersaline Lake Sediment	VSKTYGRVSIGLGFVFLFVGALDARGGFGVWAASAIMLGLFLVVFGTSFFVTDEGRKSRRRLSFGFLGAAAVLLVIALALFR
Ga0180438_101250673	3300017971	Hypersaline Lake Sediment	YRSAKFRSVSKTYGRVSIGVGFVFLFIGALDVRGGFGVWAASSIMLGLFLVVFGTSFFVSDERQKARRRLSFGFLGAALVLLVIALALFRS
Ga0180438_102884361	3300017971	Hypersaline Lake Sediment	MVSIGVGFVFLFVGALDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKARRRLSFWFLGVAVVLLGIALALLRP
Ga0180438_103754983	3300017971	Hypersaline Lake Sediment	YRSAKFRSVSKTYGRVSIGVGFVFLFIGALDVRGGFGVWAASSIMLGLFLVVFGTSFFVSGERQKSRRRLSFGFLGAALVFLCIALALFRS
Ga0180438_105771583	3300017971	Hypersaline Lake Sediment	DVRQNFGIWAAFSILLGLFLILFGASFVSRAPSQKTTRRVSFGFLGTALVLLVIALATQS
Ga0180438_111830091	3300017971	Hypersaline Lake Sediment	FVGALDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKARRRLSFWFLGAAVVLLGIALALLRP
Ga0187886_10901113	3300018018	Peatland	VAKTYGGVSIGLGFVFLFTGALDVRQHFGIWGTSSILFGLFLILLGASFVVGGPRQKTTRRVSFGFLGAALVLLAVALAWFL
Ga0187773_102854861	3300018064	Tropical Peatland	MPGSVLCGLTPGFRSGKFRSVSKTYGRVSIGLGLVFLFVGALDARAHFGIWAAFSILLGVFLILLGASFFVGAKRQKVTRRVSFGVLGAALVLLVIALVFFRS
Ga0180433_105905052	3300018080	Hypersaline Lake Sediment	VSNKTWGKVTIAVGFLLLFAGALDVRQNFGIWAAFSILLGLFLIVFGASFVSRAPSQKTTRRVSFGFLGAAVILLVIALATQS
Ga0180433_109028811	3300018080	Hypersaline Lake Sediment	MSKTWGWTGVAIGFILLFVGALDVRGHFGIWAGFSIMLGLFLILFGASFVGGSPRQKTTRHVSFGFLGAALIFLVIALVIQS
Ga0180433_111527262	3300018080	Hypersaline Lake Sediment	DVRGGFGIWAGSSILLGLFLVVFGASFLVADNRKKPTRRVSFGFLAAALVFLGIALARFL
Ga0187771_102562051	3300018088	Tropical Peatland	VAKTWGTVSIAIGFLLFFAGALDVRQHFAIWAASSILFGLFLILLGASFGVGAKRQKITRRVSFGFLGAALVVLAIALARFLS
Ga0187771_105607701	3300018088	Tropical Peatland	LTAGFRGGKFRSVAKTWGKVSIAIGFLLLFAGALDARQHFGIWAAFSVLLGLFLILLGASFVVGAKRQKITRRVSFGFLGAALVV
Ga0187774_102275712	3300018089	Tropical Peatland	VSKTYGRVSIGLGLVFLFVGALDARAHFGIWAASSILFGLFLILLGASFFVGAQRQKVTRRVSFGVLGAALVLLVIALVFFRS
Ga0187774_105863001	3300018089	Tropical Peatland	VSKTYGRVSIGLGLVFLFVGALDARAHFGIWAAFSILLGVFLILLGASFFVSAKRQKVTRRVSFGV
Ga0224495_100014032	3300022208	Sediment	VSKNYGMVSIGVGFVLLFVGALDVRGHYGIWAASSILFGLFLIVFGASFFVSGERQKVRRRVSFGFLGVAVVLLAIAIALFRS
Ga0224495_101005763	3300022208	Sediment	VSKTYGKVSIGIGFLLLFAGALDVRQHFAIWAASSILFGLFLIVFGASFFVSGERQKVRRRVSFGFLGVAVVLLAIALAPFV
Ga0224495_103313832	3300022208	Sediment	VSKTYGRVSIGVGFVFLFVGALDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDGRQKARRRRVSFGFLGAAVVLLGIALALF
Ga0224506_101359863	3300022221	Sediment	VSKTYGRISIGVGFVFLFAGALDVRGGFGVWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLGAAVVLLGIALALF
Ga0224510_100952571	3300022309	Sediment	MVSIGVGFVLLFVGALDVRGHYGIWAASSILFGLFLIVFGASFFVSGERQKVRRRVSFGFLGVAVVLLAIAIALFRS
Ga0209635_101090701	3300027888	Marine Sediment	MVSILLGLIFLFAGALDVRGQFGIWAASSIMLGLFLIVFGASFLVGAGRRKSTRRLSFGFAGAALVFLAIALAQFVS
Ga0209427_108873102	3300027901	Marine Sediment	FCSVSKSYGWVSIGLGFVFLFLGALDVRGGFGVWAASSIMLGLFLIVFGASFLVGDERRKSTRRVSFGFLAAALVFLGIALAPFLS
Ga0209427_109195662	3300027901	Marine Sediment	PSSRSAKFRSVSKTYGSVSIGLGVVFLFAGALDARGGFGFWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLGAALVFLGIALALFRS
Ga0209536_1017132782	3300027917	Marine Sediment	MRKTWAKVGIGIGFVLLFIGALDVRQHFGVWAAASILLGLFLILFSASFVSRTSRKETTRRVSFGFLGAALVLLVIALVPLLS
Ga0209536_1020310611	3300027917	Marine Sediment	VSRTYGFVSIGLGVIFLFVGALDARGGFGVWAGSSIMFGLFLIVFGTSFFVGDERRKSRRRLSLWFLGAAAVLLAIALALFRS
Ga0209536_1020839292	3300027917	Marine Sediment	VSKTYGSVSIGLGVVFLFAGALDARGGFGFWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLGAALVFLGIALALFRS
Ga0209536_1021063542	3300027917	Marine Sediment	LFAGALDVRQNFGLWAGFSIMLGLFLVLFGVSLVSAGPRQKTTRRVSFAFLGAAVVLLVIALVPLLS
Ga0209536_1029544141	3300027917	Marine Sediment	MVSIGLGVVFVFVGALDARGGFGVWAGSSIMFGLFLIVFGTSFFVTDERRKSRRRLSFWFLGAAAILLTIALALFRS
Ga0134606_102391551	3300029827	Marine Sediment	AKTWSRAGIAIGFLLLFAGALDVRQHFGFWATFSIMLGLFLIVFGASFFAGDKRRKGTRRVSFGFLGVGLVFLGIALATTF
Ga0299915_1000062720	3300030613	Soil	VSKTYSRVSIGLGLVFLFVGALDVRAHSGIWAAPSLLLGVFLILFGASFVAGAERQKVTRRVSFGFLGAALVLLGIALARFLS
Ga0299915_100258831	3300030613	Soil	MPDSVLFGLTRGFRGAKFRSVSKTYGRVSVGLGFAFLFTGALDVRQHFGIWGTSSILFGLFLILLGASFVGGGPRQKTTRRVSFGFLGAALVLLAIALAGFLS
Ga0307439_11984561	3300031356	Salt Marsh	VGFVFLFAGALDARGGFGVWAASSIMLGLSLIVFGTSFFVGDERQKVRRRVSFGFLGAALVLLVIALALFRS
Ga0307444_11392401	3300031360	Salt Marsh	MVSIAVGFLLLFAGALDVRQGFGIWAAFSIMLGLFLVLFGAGFVSLGPRQKTTRRVSFGFLGVAVILLVIALAPLLS
Ga0315544_10098326	3300031554	Salt Marsh Sediment	VGFVFLFAGALDARGGFGVWAASSIMLGLSLIVFGTSFFVSDERQKVRRRVSFGFLGAALVLLVIALALFRS
Ga0315545_10316553	3300031624	Salt Marsh Sediment	VSKTYGRVSIGVGFVFLFAGALDARGGFGVWAASSIMLGLSLIVFGTSFFVSDERQKVRRRVSFGFLGAALVLLVIALALFRS
Ga0315553_100214673	3300031652	Salt Marsh Sediment	VGLVFLFVGALDARGGFGVWAASSIMLGLSLIVFGTSFFVSDERQKVRRRVSFGFLGAALILLAIALALFRS
Ga0316575_101714262	3300031665	Rhizosphere	VSKTYGAVSIGLGVVFVFVGAIDVRGGFGVWAASSIMLGLFLIVFGTSFFVTDQRRKARRRVSFYFLGAAAVLLAIALALFRS
Ga0316579_100906642	3300031691	Rhizosphere	VSRTYGFVSIALGFVVLFAGALDVRGGFGLWASASIMLGLFLIVFGASFLVAEQRKRSTRRVSFYFLGAAAVLLAIALVLFLS
Ga0315291_100179728	3300031707	Sediment	FRGAKFRSVSKTYGEVSIALGFLLLFAGVLDVRQHFAIWAASLILLGLFLIVFGASFFASGERQRFRRRVSFGFLGAALVLLAVALALFRS
Ga0315291_101157413	3300031707	Sediment	MVSIGLGFVLLFAGALDIRAHAGIWAASSILLGLFLIIFGTGFFVGAERQKLRRRVSFGFLGAALVLLAVALALFRS
Ga0315291_102799742	3300031707	Sediment	VSKTYSGVSIGLGFVFLFAGALDVRQHYGIWAASSILLGLTLILFGASFVGGGPHQKVTRRVSFGFLGAALVLLAIALAWFL
Ga0315291_110809741	3300031707	Sediment	VSKTWGKVSIAVGFLLLFAGALDVRQHYGIWAASSILLGLFLILFGASFLAGVKRQKVTRHVSFGFLGAALVLLAIALAGFLS
Ga0315288_100074298	3300031772	Sediment	MVSIGLGFVLLFAGALDIRAHAGIWAASSILLGLFLILFGASFLAGDKRKKTTRRVSFGFLGAALVLLAVALALFRS
Ga0315288_1001403810	3300031772	Sediment	VSKTYGEVSIALGFLLLFAGVLDVRQHFAIWAASSILLGLFLIVFGASFFASGERQRFRRRVSFGFLGAALVLLAVALALFRS
Ga0315288_100862233	3300031772	Sediment	VSKTYSGVSIGLGFVFLFAGALDVRAHFGIWAASSILLGLTLILFGASFVGGGPHQKVTRRVSFGFLGAALVLLAIALAWFL
Ga0315288_101725272	3300031772	Sediment	MVSIALGFVLLFAGALDARGHFAIWAAFSILLGLFLIIFGASFVGGGPRQKTTRRVSFGFLGVALVLLVIALALFRS
Ga0315288_103266572	3300031772	Sediment	VSRTYGNVSIAVGFLLLFGGALDVRQHFAIWAASSILLGLFLIIFGASFFVGAERQKVRRRVSFGFLGVALVLLAIALALFRS
Ga0315285_101854261	3300031885	Sediment	LFAGVLDVRQHFAIWAASSILFGLFLIVFGASFLAGDKRKKTTRRVSFGFLGAALVLLAVALA
Ga0315274_100157399	3300031999	Sediment	VSKTYGEVSIALGFLLLFAGVLDVRQHFAIWAASLILLGLFLIVFGASFFASGERQRFRRRVSFGFLGAALVLLAVALALFRS
Ga0315284_109568321	3300032053	Sediment	LTHRFGGAKFRFVSKTYATVSIVLGLVFLFIGALDVRGHFGIWAASSILFGFFLIVFGASFGVDAKRQKARRRVSFGFLGAALVLLAIALALFRS
Ga0315551_102464661	3300032062	Salt Marsh Sediment	VGFVFLFAGALDARRGFGVWAASSIMLGLFLIVFGTSFFVSDERQKVRRRVSFGFLGAALVLLVIALALFRS
Ga0315295_117314181	3300032156	Sediment	MSKTYGEVSIAVGFLLLFAGALDVRQHFAIWAASSILLGLFLIIFGASFFVGAERQKVRRRVSFGFLGAALVLLAIALALFRS
Ga0315268_114158422	3300032173	Sediment	GALDVRQHFAIWAASSILLGLFLIVFGASFFVSGERQKVRRSVSFGLLGAALVLLVIALALFRS
Ga0315286_100576841	3300032342	Sediment	IWAASSILLGLFLILFGASFVGGGPRQKTTRRASFGFLGSALVLLGTALARFLS
Ga0316619_112476192	3300033414	Soil	VSKTYGKVSIAVGFLLLFAGALDVRQHFGIWAASSILLGLSLIVFGASLFVSGELQKVRRRVSFGFLGAALVLLAIALALLQS
Ga0316619_118143782	3300033414	Soil	VSKTYGKVSIAVGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVGGERQKSRRRVSFGFLGAALVLLAIALALFRS
Ga0316622_1005000612	3300033416	Soil	VSKTYAKVGIALGVVFLFIGALDVRQHFWVWGAASILFGLFLILFDSSFFVRAERKQLTRRVSFGFLGAGLVLLAIALATTS
Ga0316620_106528581	3300033480	Soil	VSKTYGKVSIAIGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVSGESQRFRRRVSFGILGAALVVLAIALALFRS
Ga0299912_1000734513	3300033489	Soil	VSKTYTRVSIGLGLVFLFVGALDVRAHSGIWAAPSLLLGVFLILFGASFVAGAERQKVTRRVSFGFLGAALVLLGIALARFLS
Ga0299912_100111896	3300033489	Soil	VSKTYGKVSIAVGFLLLFAGALDARQHFAIWAASSILLGLFLIVFGSSFFISGERQKFRHRVSFGLLGAAVVLLAIALAFFRS
Ga0316631_101186561	3300033493	Soil	VSKTYGKVSIAIGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVSGESQRFRRRVSFGILGAALVVLAIALA
Ga0316628_1019126691	3300033513	Soil	AGALDVRQHFPIWAASSILFGLFLIVFGASFFVSGERQKSRRRVSFGLLGAALVLLAIALALFRS
Ga0316628_1025599542	3300033513	Soil	TYAKVGIAFGFLLLFAGALDVRQHFPIWAASSILFGLFLIVFGASFFVGGERQKSRRRVTFGFLGAALVLLAIALALFRS
Ga0334965_0002084_12685_12933	3300033991	Sediment	VSKTWGKVGIAVGFLLLFAGALDVRQHYGIWAAFSVLLGLFLILFGASFVVGAPRQRTTRRVGFGFLAAALVVLVIALATAS
Ga0334965_0087391_963_1214	3300033991	Sediment	VSRTWGKVSIAIGFLLLFAGALDVRQHFAIWAAASVLLGLFLILFGASYFVADKRKKTTRRVSFGFLGAALVFLAIALALFRS
Ga0373900_033223_78_329	3300034078	Sediment Slurry	VSKTYGSVSIGLGLLFLFAGALDVRGHFGIWAASSVLFGLFLIIFGASFFVSGELQKVRRRVSFGFLGAALVLLAIALARFLS
Ga0373900_127350_131_379	3300034078	Sediment Slurry	VSKTYGKVSIAVGFLLLFAGALDIRQHFGIWAASSVLLGLFLIIFGASFFVSGERQKFRRRVSFGFLGAAVVLLAIALALFR
Ga0373908_120041_5_256	3300034085	Sediment Slurry	VSKTYGKVSIAVGFLLLFAGALDVRQHFGIWAAFSILLGLFLIIFGASFFVSGERQKARRRVSYGFLGAALVVLAIALALFRS
Ga0373909_0286756_237_488	3300034191	Sediment Slurry	VSKTYGKVSIAVGFLLLFAGALDVRQHFAIWAASSVLLGLFLIIFGASFFVSGERQKSRRRVSFGLLGVALVLLAVALALFRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F081925

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences