Metagenome / Metatranscriptome Family F082239

Basic Information
Family ID	F082239
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	79 residues
Representative Sequence	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGRLFAPGSSAFSAVQAIGVVPGSHTMAALESERAQLIAM
Number of Associated Samples	106
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.10 %
% of genes near scaffold ends (potentially truncated)	37.17 %
% of genes from short scaffolds (< 2000 bps)	34.51 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Unclassified (92.920 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.239 % of family members)
Environment Ontology (ENVO)	Unclassified (18.584 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.558 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.19% β-sheet: 0.00% Coil/Unstructured: 39.81%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00501	AMP-binding	16.81
PF00334	NDK	8.85
PF13193	AMP-binding_C	5.31
PF07745	Glyco_hydro_53	2.65
PF00754	F5_F8_type_C	0.88
PF13186	SPASM	0.88
PF13413	HTH_25	0.88
PF13540	RCC1_2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0105	Nucleoside diphosphate kinase	Nucleotide transport and metabolism [F]	8.85
COG3867	Arabinogalactan endo-1,4-beta-galactosidase	Carbohydrate transport and metabolism [G]	2.65

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
All Organisms	root	All Organisms	7.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
cellular organisms	root	All Organisms → cellular organisms	7.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.19 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.19 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.19 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.54 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.77 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.77 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Chlorellales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.77 %
Chlorellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	0.88 %
Actinokineospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	1.77 %
Actinokineospora spheciospongiae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora spheciospongiae	0.88 %
Chlorella clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Streptomyces sp. FxanaC1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. FxanaC1	1.77 %
Chlorella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella	0.88 %
Actinokineospora spheciospongiae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora spheciospongiae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	92.92 %
Streptomyces sp. FxanaC1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. FxanaC1	1.77 %
Chlorella variabilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → Chlorella variabilis	0.88 %
Actinokineospora spheciospongiae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora spheciospongiae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101952998	Not Available	682	Open in IMG/M
3300001356\|JGI12269J14319_10150696	Not Available	997	Open in IMG/M
3300001653\|JGI20275J16321_101253	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Chlorella clade → Chlorella → Chlorella variabilis	607	Open in IMG/M
3300003505\|JGIcombinedJ51221_10230280	Not Available	752	Open in IMG/M
3300005354\|Ga0070675_101199777	Not Available	699	Open in IMG/M
3300005436\|Ga0070713_100581746	Not Available	1062	Open in IMG/M
3300005437\|Ga0070710_10423056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. FxanaC1	897	Open in IMG/M
3300005459\|Ga0068867_101216202	Not Available	692	Open in IMG/M
3300005529\|Ga0070741_10685627	Not Available	905	Open in IMG/M
3300005539\|Ga0068853_101722409	Not Available	608	Open in IMG/M
3300005547\|Ga0070693_100646639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. FxanaC1	768	Open in IMG/M
3300005610\|Ga0070763_10160018	Not Available	1181	Open in IMG/M
3300006903\|Ga0075426_10501813	Not Available	902	Open in IMG/M
3300006954\|Ga0079219_10420941	Not Available	896	Open in IMG/M
3300007258\|Ga0099793_10518013	Not Available	593	Open in IMG/M
3300009137\|Ga0066709_100746432	Not Available	1412	Open in IMG/M
3300010876\|Ga0126361_10881096	Not Available	1591	Open in IMG/M
3300012353\|Ga0137367_10569585	Not Available	794	Open in IMG/M
3300018058\|Ga0187766_10772342	Not Available	669	Open in IMG/M
3300018062\|Ga0187784_10677557	Not Available	826	Open in IMG/M
3300018085\|Ga0187772_11411025	Not Available	517	Open in IMG/M
3300018089\|Ga0187774_10837794	Not Available	625	Open in IMG/M
3300021478\|Ga0210402_10611827	Not Available	1009	Open in IMG/M
3300021559\|Ga0210409_10365468	Not Available	1295	Open in IMG/M
3300025929\|Ga0207664_11291510	Not Available	649	Open in IMG/M
3300026467\|Ga0257154_1023807	Not Available	901	Open in IMG/M
3300027502\|Ga0209622_1072294	Not Available	630	Open in IMG/M
3300027575\|Ga0209525_1003792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3420	Open in IMG/M
3300027737\|Ga0209038_10164514	Not Available	672	Open in IMG/M
3300027765\|Ga0209073_10403334	Not Available	561	Open in IMG/M
3300027869\|Ga0209579_10401788	Not Available	743	Open in IMG/M
3300028819\|Ga0307296_10042275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2405	Open in IMG/M
3300031640\|Ga0318555_10099068	Not Available	1534	Open in IMG/M
3300031740\|Ga0307468_101858420	Not Available	572	Open in IMG/M
3300031768\|Ga0318509_10581414	Not Available	624	Open in IMG/M
3300031798\|Ga0318523_10240095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora spheciospongiae	905	Open in IMG/M
3300031805\|Ga0318497_10708777	Not Available	564	Open in IMG/M
3300031823\|Ga0307478_10024966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4254	Open in IMG/M
3300031897\|Ga0318520_10184480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1225	Open in IMG/M
3300031981\|Ga0318531_10253725	Not Available	794	Open in IMG/M
3300032001\|Ga0306922_10583461	Not Available	1186	Open in IMG/M
3300033289\|Ga0310914_10399995	Not Available	1243	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.84%
Plants	Host-Associated → Plants	8.85%
Aquatic	Environmental → Aquatic	5.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.53%
Freshwater	Environmental → Aquatic → Freshwater	5.31%
Peat	Environmental → Terrestrial → Peat	5.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.65%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.33%
Loam	Environmental → Terrestrial → Soil → Loam	15.04%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.16%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.31%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.65%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.47%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.24%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.31%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.31%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.42%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2040502001	Soil microbial communities from sample at FACE Site 2 North Carolina CO2+	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001653	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF041	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCE_5827600	2040502001	Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGKVFAPGSSAFGAVQAIEIVPGATPWPPSNPNARN
INPhiseqgaiiFebDRAFT_1019529982	3300000364	Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVIGVAVGGKLFAPGSSAFGAVQAIEMVPGSHTMAALESERAQLIAMTTAARTLTVV
JGI12269J14319_101506963	3300001356	Peatlands Soil	LSRHRTGTRRDRRKRGLIRRFGIVFPVAVFAAIAVIGVAVGAEIFAPVSAALKIVQSVGVVEGSHTMQLLEDERAQLIAMT
JGI20275J16321_1012531	3300001653	Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFHPGSGAFNVAQAVEAVPGSHTIALLETERRQLIAMTDAANTKILVAKPQLASPSEVAAANPGTGTGTSTGTSTGGGGI
JGIcombinedJ26739_1005791512	3300002245	Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVLAVIGVAVGAKVFSPGSGAFNVAQAVEAVPG
JGIcombinedJ26739_1018285521	3300002245	Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAALAVVGVAVGAELFSPGSGAFNVAQAVEAVPGSHTMA
JGIcombinedJ51221_102302801	3300003505	Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFHPGSGAFNVAQAVEAVPGSHTIALLETERRQLIAMTDAANTKILVAKPQLASPSEVAAANPGTGT
Ga0070675_1011997771	3300005354	Miscanthus Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVTIFAVIAVVGVAVAGKLVEPGSSAFGAVQAIGVVPGSHTMAELESERTQLIAMTTAART
Ga0070709_108032012	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LFRRFGIVFPVAVFALVAIIGVAVGGKLLAPGSSAFSAVQAIEMVPGSRTMAALEAERTQLIAMTTAART
Ga0070713_1005817461	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGKVFAPGSSAFGAVRAIEIVPGSHTMAALESERAQLIAMTTAARTLTVVAKPKL
Ga0070710_104230561	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MADERIALSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVIGVAVGGKLFAPGSSAFGAVQAIEMVPGSHAMAALESERAQLIAMTTAARTLTVVAKPKLAS
Ga0068867_1012162021	3300005459	Miscanthus Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVTIFAVLAVVGVAVAGKLVEPGSSAFGAVQAIGVVPGSHTMAELESERTQLIAMTTAARTLTVVAKPKLA
Ga0070741_106856271	3300005529	Surface Soil	VARLFRLGSQERIALSRHRTGSRSTRRKRGLIRRVGIVFPTAVIAVVLVIAVALGARLFAPGSGAFSAVQAIEQVPGSHTMALLENEREQLI
Ga0070730_108027601	3300005537	Surface Soil	LSRHRTGARSSRRKRGLFRRFGIVLPVAVFSLVAIIGVAVGGKLFAPGSSAFSAVQAIGVVPGSHTM
Ga0068853_1017224091	3300005539	Corn Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVTIFAVIAVVGVAVAGKLVEPGSSAFGAVQAIGVVPGSHTMAELESERTQLIAMTTAARTL
Ga0070732_107218311	3300005542	Surface Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAAIAVIGVAVGAVIFNPGTGAFSVARAIEAVPGSHTM
Ga0070693_1006466391	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVTIFAVLAVVGVAVGGKLVEPGSSAFGAVQAIGVVPGSHTMAELESERTQLIAMTTAARTLTVVAKPKLAQPAEVAAANP
Ga0070665_1005153932	3300005548	Switchgrass Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVTIFAVLAVVGVAVGGKLVEPGSSAFGAVQAIGVVPGSHTMAEL
Ga0070664_1001818192	3300005564	Corn Rhizosphere	LFRRFGIVFPVAVFALVAIIGVAVGGKLLAPGSSAFSAVQAIEMVPGSRTMAALEAERTQLIAMTT
Ga0066705_105217272	3300005569	Soil	LSRHRTGARSGRRKRGLFRRFGIVFPVAVFALVAIIGVAVGGKLLGPGSSAFSAVQAIEM
Ga0070762_103723962	3300005602	Soil	LSRHRTGARSSRRKRGLIRRFGIVFPVAVVAAIAVIGVAVGAEIFAPGTSAFSAIQAIEAVPGSRTMTLLEAER
Ga0070763_101600183	3300005610	Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPIAVFAAVVVIGVAVGAAVFHPGSGAFNVAQAVEAVPGSHTMALLETERRQLIAMTDAANTKILVAKPQLASPSEVAAANP
Ga0070766_102048782	3300005921	Soil	MADERIALSRHRTGTRSNRRRRGLIRRVGIVFPVAVFAVVAVIGVAVGGKLFAPVSGAFGAAD
Ga0080026_101698501	3300005952	Permafrost Soil	LSRHRTGARSSRRKRGLIRRFGIVFPVAVIAAIVVIGVAVGAQVFAPGSGAFSAAEAIEAVPGSHTMALLEAE
Ga0070717_119713181	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LSRHRTGARSGRRKRGLFRRFGIVFPVAVFALVAIVGVAVGGKLLAPGSSAFSAVQA
Ga0066651_101084192	3300006031	Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVTIFAVIAVAGVAVGGKLIAPGSSAFGAVQA
Ga0075426_105018133	3300006903	Populus Rhizosphere	MADERIALSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVIGVAVGGKLFAPGSSAFGAVQAIEMVPGSHTMAALESERAQLIAMTTAARTLTVVAKPKLA
Ga0079219_104209411	3300006954	Agricultural Soil	MANERIALSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGKLFAPGSSAFSAVQAIEMVPGSHTMAALESERAQLIAMTTAARTLTVVAKPKLAQPAQ
Ga0075435_1002460451	3300007076	Populus Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVAIFAVIAVAGVAIGGKLIEPGSSAFGAVQAIGVVPGSHTMAELE
Ga0099793_105180131	3300007258	Vadose Zone Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVIGVAVGGKLFAPGSSAFSAVQAIEMVPGSHTMAALESERAQLIAMTTAARTLTVVA
Ga0066709_1007464321	3300009137	Grasslands Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGKVFAPGSSAFGAVRAIEILPGSHTMAALESERAQLIAMTTAARTLTVV
Ga0116220_100032591	3300009525	Peatlands Soil	LSRHRTGNRSDRRKRGLIRRVGIVFPVAVFAVIAVVGVAVGAAVFGPGAAAFNIAQAVEAGP
Ga0116217_108064631	3300009700	Peatlands Soil	LSRHGTGTRSNRHKRGLIRRVGIVFPVAVFAVVAVLGVAVGAAVFGPGSGAFNIAQAVE
Ga0126373_117759741	3300010048	Tropical Forest Soil	LFRRFGIVFPVAVFALVAIVGVAVGGKLLAPGSSAFSAVQAIGVVPGSRTMAALEAERTQLIAMTTAARTLT
Ga0126361_108810962	3300010876	Boreal Forest Soil	LSRHRTGNRSNRHKRGLIRRVGIVFPVAVCAVLAVIGVAVGAELFSPGSGAFNVAQAVEAVPGSHTMALLETEREQLIAMTDAANTKLVV
Ga0137370_108607801	3300012285	Vadose Zone Soil	LFRRFGIVFPVAVFALVAIIGVAVGGKLFAPGSSAFSAVQAIGVVPGSRTMAALEAERTQLIAMTTAARTL
Ga0137367_105695851	3300012353	Vadose Zone Soil	MADERIALSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGKLFAPGSSAFSAVQAIEMVPGSHTMAALESERAQLIAMTT
Ga0137385_100396531	3300012359	Vadose Zone Soil	LSRHGTGARSSRRKRGLFRRFGIVFPAAVFAVVAVIGVAVGGKVLDPGSSAFSAVHAIEMVPGSHTMAALEAAREQLI
Ga0164309_113296781	3300012984	Soil	LFRRFGIVFPVAVFALVAIIGVAVGGKLLAPGSSAFSAVQAIEMVPGSRTMAALEAERTQLIAMTTAARTLTVVAK
Ga0181534_103699202	3300014168	Bog	LFRRFGIVFPVAVIAAIVVIGVAVGAMVFAPASGAFSAAEAIEAVPGSHTMSLLEAEREQLIAMT
Ga0157376_108184562	3300014969	Miscanthus Rhizosphere	LFRRFGIVFPVAVFALVAIVGVAVGGKLLAPGSSAFSAVQAIEMVPGSRTMAALEAERTQLIAMTTA
Ga0182035_113688162	3300016341	Soil	LSRHRTGARSSRRKRGLIRRFGIVFPAAIVAVIAVVGVAVGVKVLAPGSSAFSAVRAIGMVPGS
Ga0187847_100758502	3300017948	Peatland	LFRRFGIVFPVAVFALVAIIGVAVGGKLFAPGSSAFGAVQAIGVVPGSHTMTELEAERQQLIAMTTAARTLTVVDKP
Ga0187817_103183192	3300017955	Freshwater Sediment	LSRHRTGNRSNRRKRSLIRRVGIVFPVAVFAVVAVGGVAVGAAVLSPGAGAFNIAQAVEAGPGSHTIALLEAERAQLIAM
Ga0187783_111863551	3300017970	Tropical Peatland	MAEERIALSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVIAVVGVAVVAEVFGPESGAFNVAQAVEAVPGSHT
Ga0187777_112742561	3300017974	Tropical Peatland	LSRHRTGNRSDRRKRGLIRRFGIVFLVAGFAVVAVIGVAVGAAVFGQGSGAFSIAQAMEAVPGSHTIALLQAEREQLIAMTA
Ga0187766_107723421	3300018058	Tropical Peatland	LSRHGTGARSSRRKRGLFRRFGIVFPAAIFALVVVIGVAVGGKVLAPGSGAFGAVQAIEMVPGSRTMAALETERTQLIAMTAAARTLTVVAK
Ga0187765_111533561	3300018060	Tropical Peatland	LSVHRTGARSIRHKRGLIRRYGIVFPAAVFALVAVIGVAVGGKVFAPGTGAFSAVQAIEMVPGSRTMAALEAER
Ga0187784_106775572	3300018062	Tropical Peatland	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFALLVVIGVAVGAAVFGPGSGAFNVAQAIEAVPGSHTIALLEAERDQVIAMTTAARTLTLVASPRLASPS
Ga0187772_107160282	3300018085	Tropical Peatland	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVCGVAVGAAVFGPASGAFNIAQAVEDGPGSHTITLL
Ga0187772_114110251	3300018085	Tropical Peatland	LSRHRTGTRRDRRKRGLIRRFGIVFPVAVFASIAVIGVAVGAEIFAPVSAALKIVQSVGVVEGSHTMQLLEDERAQLIAMTDAARTLTVAVGPQLAYPSQVD
Ga0187774_108377941	3300018089	Tropical Peatland	LSRHQTGARSNRRKRGLIRRVGIVFPVAVFAVIAVIGVAVGAAIFGPGPGAFNVARAVEAVPGSHTIALLEAEREQLIAMTAAARTLTVVA
Ga0187770_113139521	3300018090	Tropical Peatland	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVCGVAVGAAVFGPGSGAFDIARAVEAGPGSHTITL
Ga0210407_111840911	3300020579	Soil	MAASISRARTDERIALSRHRTGARSNRRKRGLIRRFGIVFPAAVIATVAVIAVAVGAKVLAPRSGAFSAVQAIEMVPGSHTMVELETERA
Ga0210408_106934902	3300021178	Soil	LSQHRTGTRSNRHKRGLIRRVGIVFPVAVFAVVAVLGVAVGAAVFGPGSGAFNIAQAVEAGPGSHTIALLEAERAQ
Ga0213875_101240402	3300021388	Plant Roots	LSRHRTGARSARRKRGLFRRFGIVFPAAVFAVVAIIGVAVGGELFTPGSSAFGAVQA
Ga0210389_114907211	3300021404	Soil	LSRHRTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTAVAVGAKVLAPGSSAFSAVQAIEMVPGSHTMATLDA
Ga0210386_109298551	3300021406	Soil	MAASISRARTDERIALSRHRTGARSNRRKRGLIRRFGIVFPAAVIATVAVIAVAVGAKVLAPRSGAFSAVQAIEMVPGSHT
Ga0210402_106118272	3300021478	Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVIGVAVGGRLFAPGSSAFGAVQAIEIVPGSHTMAALESERAQLIAMTTAARTLTVVAK
Ga0210409_103654682	3300021559	Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFHPGSGAFNVAQAVEAVPGSHTIALLETERRQLIAMTDAANTKILVAKPQLASPSEVA
Ga0179589_105351231	3300024288	Vadose Zone Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGRLFAPGSSAFGAVQAIGVVPGSHTMAALESERAQLIAM
Ga0207663_107106431	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LSRHRTGARSSRRKRGLIRRFGLVVPVAIFAVIAVAGVAVGGKLIEPGSSAFGAVQAIGVVPGS
Ga0207664_112915102	3300025929	Agricultural Soil	LSRHRTGARSSRRKRGLIRRFGLVVPVAIFAVIAVAGVAVGGKLIEPGSSAFGAVQAIGVVPGSHTMAELESERTQLIAMTTAART
Ga0207702_117040551	3300026078	Corn Rhizosphere	LSRHRTGARSGRRKRGLFRRFGIVFPVAVFALVAIVGVAVGGKLLAPGSSAFSAVQAI
Ga0257154_10238072	3300026467	Soil	LSRHRTGNRSNRHKRGLIRRVGIVFPVAIFAAVAVIGVAAGAAVFRPGSGAFNVAQAVEAVPGSHTMALLETERKQLIAMTDAANTKIL
Ga0208099_10477251	3300027096	Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVTVIAVLAVIAVAVGARVFAPGSGAFSVAEAVEAVPGSHTMVLLEAEREQEIAMA
Ga0209622_10722942	3300027502	Forest Soil	LSRHRTGNRSNRRKRGLFRRVGIVFPVAIFAVIAVIGVAVGAKVFSPGSGAFNVAQAVEAVPGSHTIALLETERRQLIAMTDAANTKI
Ga0209525_10037921	3300027575	Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVLAVIGVAVGAKVFSPGSGAFNVAQAVEAVPGSHTMALLESEREQVIAMTDAANTKILVAKPELASPSQVASANPDTGAGAGTGPGSRGGL
Ga0209588_12265211	3300027671	Vadose Zone Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAVFAVVAVIAVAVGGKVLAPGSSAFSAVHAIEMVPGSHTMAALEAEREQLIAM
Ga0209248_100358801	3300027729	Bog Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFRPGSGAFNVAQAIEAVPGSHTMALLQTERAQVIA
Ga0209038_101645141	3300027737	Bog Forest Soil	LSRHRAGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFRPGSGAFNVAQAIEAVPGSHTMALLQTERAQLIAMTDAANTKILVA
Ga0209073_104033341	3300027765	Agricultural Soil	LSRHRTGARSGRRKRGLFRRFGIVFPVAVFALVAIVGVAVGGKLLAPGSSAFSAVQAIEMVPGSRTMAALEAERTQLIAMTTAARTLTVVA
Ga0209448_101404201	3300027783	Bog Forest Soil	LSRHRTGNRSNRHKRGLIRRVGIVFPVAIFAAVAVIGVAAGAAVFRPGSGAFNVAQA
Ga0209060_100430221	3300027826	Surface Soil	LSRHRTGARSGRRKRGLIRRVGIVFPVAVIAVLVIIGVAVGAELLAPGSGAFSAAE
Ga0209579_104017881	3300027869	Surface Soil	LSRHRTGTRSDRRKRGLIRRFGIVFPVAIFAAIAVIGVAVGAEIFAPVSAALKIVQSVGVVEGSHTMQLLEDERAQLIEMTDAARTLTVAAGPQLASPSQVAAANPGTGGTS
Ga0307296_100422752	3300028819	Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVTIFAVIAVVGVAVGGKLFAPGSSAFGAVQAIGVVPGSHTMAALESERAQLIAMTTAARTLTVVAKPKLA
Ga0307312_100517911	3300028828	Soil	LSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVVGVAVGGRLFAPGSSAFSAVQAIGVVPGSHTMAALESERAQLIAM
Ga0311340_104529933	3300029943	Palsa	LSGHRTGARSGRRKRGLIRRFGIVLPAAVIALIVVIGVAVGASVFSPGTSAFGAVQAIEMVP
Ga0311339_101493773	3300029999	Palsa	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAAVAVIGVAVGAAVFSPGSGAFNVAQAVEAVPGSHTMALLEAER
Ga0311338_117287601	3300030007	Palsa	MVSTRAWPNERISLSGHRTGARSGRRKRGLIRRFGIVLPAAVIALIVVIGVAVGASVFSPGTSAFGAVQAIEMVPGSHTMAGLE
Ga0310037_102729072	3300030494	Peatlands Soil	LSRHRTGARSSRRKRGLIRRFGIVLPAAVIATVAVIAVAVGAKVFAPGSSAFSAIQAIEIVPGSHTMAALEDEREQ
Ga0311372_102003974	3300030520	Palsa	LSGHRTGARSARRKRGLIRRFGIVLPAAVIALIVVIGVAVGASVFSPGTSAFGAVQAIEMVPGSHTMAG
Ga0302325_101963834	3300031234	Palsa	LSGHRTGARSARRKRGLIRRFGIVLPAAVIALIVVIGVAVGASVFSPGTSAFGAVQAIEMVPGSHTMAGLE
Ga0302325_109693281	3300031234	Palsa	LSGHRTGARSGRRKRGLIRRFGIVLPAAVIALIVVIGVAVGASVFSPGTSAFGAVQAIEMVPGSHTMAGLE
Ga0310915_109869471	3300031573	Soil	LSRHRTGTRSNQRKRGLIGRVGIVFPVAVIAALAVIGVAVGGEVFAPVSGAFSAADALEAVPGSHTMVVLEAEHEQLIT
Ga0318555_100990683	3300031640	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGIKLFAPGSSAFSAVRAIEMVPGSRTMAALETERTQLIAMTTAARTLTVVAKPKL
Ga0318572_100745793	3300031681	Soil	LSRHRTGARSSRRKRGLIRRFGIVFPAAIVAVIAVVGVAVGVKVLAPGSSAFSAVRAIGMVPGSRTMATLEAERAQLIAMTT
Ga0306917_107275261	3300031719	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGIKLFAPGSSAFSAVRAIE
Ga0307468_1018584201	3300031740	Hardwood Forest Soil	MADERIALSRHRTGARSSRRKRGLIRRFGLVFPVAIFAVIAVIGVAVGGKLFAPGSSAFGAVQAIEMVPGSHTMAALESERAQLIAMT
Ga0318509_105814141	3300031768	Soil	LSRHRTGARSSRRKQGLFRRFGIVFPATIFALVAVIGVAVGGKVFASGSGAFSAVQAIEMVPGSHTMATLEAEHVQLIAMTTAARTLTVVAKPKL
Ga0318548_101222602	3300031793	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVSGVAVGVKVFAPVSSAFSAVQAIEMVPGS
Ga0318576_101242491	3300031796	Soil	LSRHRTGNRSDRRKRGLIRRVGIVFPVAVFAAVAVAAVAVGATVFGPGSGAFNIARAMEAVPGSHTI
Ga0318523_102400952	3300031798	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGIKLFAPGSSAFSAVRAIEMVPGSRTMAALETERTQLIAMTTAARTLTVVAK
Ga0318497_107087771	3300031805	Soil	LSQHRTGTRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAAVFSPGSGAFNIAQAVEAGPGSHTIALLETEHAQLTAMTTAARTLTVVVR
Ga0307478_100249665	3300031823	Hardwood Forest Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAVVAVIGVAVGAKVFSPGSGAFNVAQAIEAVPGSHTIALLQTQRAQLIAMTDAANT
Ga0318495_105438701	3300031860	Soil	LSRHRTGNRSDRRKRGLIRRVGIVFPVAVFAAVTVAAVAVGAAVFGPGSGAFNIARAVEAVPGSHTIA
Ga0318520_101844803	3300031897	Soil	LSRHRTGTRSNQRKRGLIGRAGIVFPVAVIAALAVIGVAVGGEVFAPVSGAFSAADALEAVPGSHTMTLLEAEREQLITMTAAARTLTLVAEPE
Ga0318520_104988651	3300031897	Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAALAVIGVAVGAAVFGPGSGAFSVARAVEAVPGSHTIALLEAE
Ga0306921_113837601	3300031912	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGIKLFAPGSSAFSAVRAIEMVPGSRTMAALET
Ga0318531_102537251	3300031981	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGIKLFAPGSSAFSAVRAIEMVPGSRTMAALETERTQLIAMTTAARTLT
Ga0306922_105834611	3300032001	Soil	LSRHRTGTRSNRRKRGLIGRVGIVFPVAIFAVVAVIGVAVGAAVFGPGSGAFNIAQAVEAGPGSHTIALLETEHAQLTAMTTAARTL
Ga0318513_101134242	3300032065	Soil	LSRHRTGTRSNQRKRGLIRRVGIVFPAAVIAVIAVIGVAVGAEVFAPGSGAFSAADALEAVPGSHTMTLL
Ga0318513_106377681	3300032065	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGVKVFAPVSSAFSAVQAIEM
Ga0318524_104044111	3300032067	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIFAVIAVTGVAVGVKVFAPVSSAFSAVQAVGMVPGS
Ga0318553_100588163	3300032068	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVAGVAVGVKVFAPVSSAFSAVQAVGMVPGSRTMATL
Ga0311301_106410622	3300032160	Peatlands Soil	LSRHRTGARSSRRKRGLIRRFGIVFPAAVIATVAVIAVAVGVKVFAPGSSAFGAVQAIEIVPGSHTM
Ga0335079_112187751	3300032783	Soil	LSRHRTGARSSRRKRGLTRRFGIVFPAAVFALVAVIAVAVGGKIFAPGTGAFSADQAIEMDPGIHNMAAL
Ga0335080_108778162	3300032828	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVSGVAVGVKVFAPVSSAFSAVQAIGMVPGSRTMATLE
Ga0335073_114345872	3300033134	Soil	LSRHRTGARSSRHKRGLIRRFGIVFPAAIFALVAVLAVAVGGKVFAPGTGAFSAVQAIEMVPGSHT
Ga0335073_119461741	3300033134	Soil	LSRHRTGNRSNRRKRGLIRRVGIVFPVAVFAAIAVIGVAVGAEVFGPGSGAFNVAQAVEAVPGSHTIALL
Ga0335077_100571564	3300033158	Soil	LSRHRTGARSSRRKRGLIRRFGIVFPAAVIAVLAVAGVAVGGKVFAPGSSAFSAVQAIEMVPGSHTMARPSARS
Ga0335077_118458631	3300033158	Soil	LSRHRTGTRRDRRKRGLIRRFGIVFPVAVFAAIAVIGVAVGAEIFAPVSAALKIVQSVGVVEGSHTMQLLED
Ga0310914_103999951	3300033289	Soil	LSRHGTGARSSRRKRGLIRRFGIVFPAAIVAVIAVTGVAVGIKLFAPGSSAFSAVRAIEMVPGSRTMAALETERTQLIAMTTAARTLTVVAKPKLAKPAEV

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082239

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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