Metagenome / Metatranscriptome Family F082244

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082244
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	45 residues
Representative Sequence	MRPAMHHLSISAIRADALFVSALQRGDHPSAKEVRQAVAAAV
Number of Associated Samples	93
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.43 %
% of genes near scaffold ends (potentially truncated)	90.27 %
% of genes from short scaffolds (< 2000 bps)	80.53 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.292 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.549 % of family members)
Environment Ontology (ENVO)	Unclassified (27.434 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.903 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.43% β-sheet: 0.00% Coil/Unstructured: 58.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF02661	Fic	4.42
PF05685	Uma2	4.42
PF04909	Amidohydro_2	3.54
PF00561	Abhydrolase_1	3.54
PF01833	TIG	1.77
PF13460	NAD_binding_10	1.77
PF01381	HTH_3	1.77
PF00202	Aminotran_3	1.77
PF00072	Response_reg	0.88
PF00106	adh_short	0.88
PF16912	Glu_dehyd_C	0.88
PF05016	ParE_toxin	0.88
PF12802	MarR_2	0.88
PF00078	RVT_1	0.88
PF12680	SnoaL_2	0.88
PF00903	Glyoxalase	0.88
PF00440	TetR_N	0.88
PF13302	Acetyltransf_3	0.88
PF01494	FAD_binding_3	0.88
PF00872	Transposase_mut	0.88
PF07905	PucR	0.88
PF00378	ECH_1	0.88
PF00005	ABC_tran	0.88
PF13006	Nterm_IS4	0.88
PF04978	DUF664	0.88
PF07746	LigA	0.88
PF04672	Methyltransf_19	0.88
PF00480	ROK	0.88
PF04715	Anth_synt_I_N	0.88
PF11716	MDMPI_N	0.88
PF08241	Methyltransf_11	0.88
PF08044	DUF1707	0.88
PF03466	LysR_substrate	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	4.42
COG0147	Anthranilate/para-aminobenzoate synthases component I	Amino acid transport and metabolism [E]	1.77
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.77
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.77
COG2508	DNA-binding transcriptional regulator, PucR/PutR family	Transcription [K]	1.77
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.88
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.88
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.88
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.29 %
Unclassified	root	N/A	40.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.29 %
Unclassified	root	N/A	40.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.29 %
Unclassified	root	N/A	40.71 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.44 %
Unclassified	root	N/A	40.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.90 %
Unclassified	root	N/A	40.71 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.71 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.71 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.54 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.65 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	2.65 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.88 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.71 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	3.54 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.65 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.71 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	3.54 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.88 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.88 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.71 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.54 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
unclassified Actinoplanes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes	0.88 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.88 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.71 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	3.54 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.65 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.77 %
Actinoplanes sp. SE50/110	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. SE50/110	0.88 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.88 %
Bradyrhizobium sp. CCGUVB23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	0.88 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10179370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	858	Open in IMG/M
3300004080\|Ga0062385_10494855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300005168\|Ga0066809_10177291	Not Available	566	Open in IMG/M
3300005602\|Ga0070762_10093106	All Organisms → cellular organisms → Bacteria	1732	Open in IMG/M
3300005764\|Ga0066903_102677367	All Organisms → cellular organisms → Bacteria → Terrabacteria group	967	Open in IMG/M
3300005944\|Ga0066788_10087705	Not Available	762	Open in IMG/M
3300005995\|Ga0066790_10322500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. SE50/110	659	Open in IMG/M
3300006893\|Ga0073928_10717730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	696	Open in IMG/M
3300010046\|Ga0126384_10725012	Not Available	883	Open in IMG/M
3300010366\|Ga0126379_12948531	Not Available	569	Open in IMG/M
3300010376\|Ga0126381_103843802	Not Available	586	Open in IMG/M
3300011107\|Ga0151490_1384157	Not Available	506	Open in IMG/M
3300011270\|Ga0137391_11335603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	564	Open in IMG/M
3300012198\|Ga0137364_10495588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	918	Open in IMG/M
3300012201\|Ga0137365_11309128	Not Available	514	Open in IMG/M
3300012207\|Ga0137381_10936890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	748	Open in IMG/M
3300012208\|Ga0137376_10261451	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300012357\|Ga0137384_10188679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1726	Open in IMG/M
3300013105\|Ga0157369_12453327	Not Available	528	Open in IMG/M
3300014657\|Ga0181522_10036508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2733	Open in IMG/M
3300014838\|Ga0182030_10570803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1102	Open in IMG/M
3300015373\|Ga0132257_102518143	Not Available	669	Open in IMG/M
3300016294\|Ga0182041_11060786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	734	Open in IMG/M
3300016319\|Ga0182033_10306743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1312	Open in IMG/M
3300016319\|Ga0182033_10719914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	875	Open in IMG/M
3300016422\|Ga0182039_11222290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	679	Open in IMG/M
3300016445\|Ga0182038_10382974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1174	Open in IMG/M
3300017926\|Ga0187807_1234245	Not Available	600	Open in IMG/M
3300017928\|Ga0187806_1194610	Not Available	685	Open in IMG/M
3300017928\|Ga0187806_1221035	Not Available	648	Open in IMG/M
3300017955\|Ga0187817_10643485	Not Available	676	Open in IMG/M
3300017966\|Ga0187776_10049172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2395	Open in IMG/M
3300017966\|Ga0187776_10412299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	906	Open in IMG/M
3300017972\|Ga0187781_11089670	Not Available	586	Open in IMG/M
3300018060\|Ga0187765_10983027	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300018060\|Ga0187765_10998744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	574	Open in IMG/M
3300018086\|Ga0187769_11419978	Not Available	525	Open in IMG/M
3300018089\|Ga0187774_10895607	Not Available	609	Open in IMG/M
3300020583\|Ga0210401_11010246	Not Available	690	Open in IMG/M
3300021180\|Ga0210396_10036009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4568	Open in IMG/M
3300021181\|Ga0210388_11635149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300021404\|Ga0210389_10386280	Not Available	1100	Open in IMG/M
3300021433\|Ga0210391_10371948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1121	Open in IMG/M
3300021433\|Ga0210391_10791400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	741	Open in IMG/M
3300025473\|Ga0208190_1071728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	700	Open in IMG/M
3300025885\|Ga0207653_10212147	Not Available	733	Open in IMG/M
3300025915\|Ga0207693_10124908	Not Available	2022	Open in IMG/M
3300025916\|Ga0207663_10996944	Not Available	672	Open in IMG/M
3300025916\|Ga0207663_11327801	Not Available	579	Open in IMG/M
3300025929\|Ga0207664_10534310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1051	Open in IMG/M
3300026489\|Ga0257160_1069288	Not Available	622	Open in IMG/M
3300027829\|Ga0209773_10406464	Not Available	564	Open in IMG/M
3300027829\|Ga0209773_10446924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	534	Open in IMG/M
3300027862\|Ga0209701_10602839	Not Available	582	Open in IMG/M
3300027905\|Ga0209415_10989757	Not Available	561	Open in IMG/M
3300028775\|Ga0302231_10410807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300028776\|Ga0302303_10113855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300028789\|Ga0302232_10003091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11279	Open in IMG/M
3300028789\|Ga0302232_10415450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	661	Open in IMG/M
3300028808\|Ga0302228_10020985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3359	Open in IMG/M
3300028877\|Ga0302235_10488691	Not Available	523	Open in IMG/M
3300028879\|Ga0302229_10041848	All Organisms → cellular organisms → Bacteria	2327	Open in IMG/M
3300028879\|Ga0302229_10113924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	1271	Open in IMG/M
3300029882\|Ga0311368_10262710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1327	Open in IMG/M
3300029910\|Ga0311369_10300850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1432	Open in IMG/M
3300029910\|Ga0311369_10642420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGUVB23	879	Open in IMG/M
3300029951\|Ga0311371_10831104	Not Available	1131	Open in IMG/M
3300030053\|Ga0302177_10436351	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300030503\|Ga0311370_10053197	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5945	Open in IMG/M
3300030586\|Ga0265393_1182562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300030617\|Ga0311356_10008811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11264	Open in IMG/M
3300030617\|Ga0311356_11107969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	733	Open in IMG/M
3300030618\|Ga0311354_10586650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1085	Open in IMG/M
3300031028\|Ga0302180_10062058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2221	Open in IMG/M
3300031233\|Ga0302307_10026358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3221	Open in IMG/M
3300031233\|Ga0302307_10383867	Not Available	715	Open in IMG/M
3300031234\|Ga0302325_10676005	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1495	Open in IMG/M
3300031234\|Ga0302325_10724310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1425	Open in IMG/M
3300031525\|Ga0302326_10828266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1328	Open in IMG/M
3300031525\|Ga0302326_12521742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	644	Open in IMG/M
3300031640\|Ga0318555_10346221	Not Available	805	Open in IMG/M
3300031682\|Ga0318560_10078812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1676	Open in IMG/M
3300031715\|Ga0307476_10997642	Not Available	617	Open in IMG/M
3300031748\|Ga0318492_10584735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	595	Open in IMG/M
3300031768\|Ga0318509_10146611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1300	Open in IMG/M
3300031768\|Ga0318509_10702654	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300031770\|Ga0318521_10402046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	816	Open in IMG/M
3300031771\|Ga0318546_10869448	Not Available	635	Open in IMG/M
3300031771\|Ga0318546_10991053	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300031795\|Ga0318557_10564128	Not Available	522	Open in IMG/M
3300031799\|Ga0318565_10553145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	554	Open in IMG/M
3300031805\|Ga0318497_10164747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1218	Open in IMG/M
3300031805\|Ga0318497_10866249	Not Available	507	Open in IMG/M
3300031845\|Ga0318511_10092891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1275	Open in IMG/M
3300031845\|Ga0318511_10483317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300031959\|Ga0318530_10461953	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300032009\|Ga0318563_10220161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1024	Open in IMG/M
3300032043\|Ga0318556_10156375	Not Available	1178	Open in IMG/M
3300032063\|Ga0318504_10651873	Not Available	506	Open in IMG/M
3300032174\|Ga0307470_10160493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1388	Open in IMG/M
3300032770\|Ga0335085_10174483	All Organisms → cellular organisms → Bacteria	2663	Open in IMG/M
3300032828\|Ga0335080_10026894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6261	Open in IMG/M
3300033158\|Ga0335077_10079827	Not Available	3886	Open in IMG/M
3300033290\|Ga0318519_10757952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	596	Open in IMG/M
3300034124\|Ga0370483_0260992	Not Available	594	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.38%
Aquatic	Environmental → Aquatic	8.85%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.14%
Peat	Environmental → Terrestrial → Peat	21.24%
Freshwater	Environmental → Aquatic → Freshwater	7.96%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	21.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.96%
Loam	Environmental → Terrestrial → Soil → Loam	7.08%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.28%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	21.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.54%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	21.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.19%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.19%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300025473	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030586	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101793702	3300003505	Forest Soil	MRPAMHHLSIGAIRADALFVSALQRGDRPSAKEVRRAVAAAVEAFGQRGCVERV
Ga0062385_104948552	3300004080	Bog Forest Soil	MRPAMDHLSISVIRADALFVSALQRGDHPGARQVRQAVAAAVGAFGP
Ga0066809_101772912	3300005168	Soil	MRPAMHHLSISAARADALFVSALQRSEELSTGQVWQAVAAAVRAFGSRGCAER
Ga0070762_100931063	3300005602	Soil	MRPAMDHLSVSAIRADALFASALQRGDHPGAKEVRQAVAAAVGAFG
Ga0066903_1026773673	3300005764	Tropical Forest Soil	MRPAIHHLSISAVGADALFVSVLQRSEEPSAGQVRQ
Ga0066788_100877051	3300005944	Soil	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAAVEAFGQRG
Ga0066790_103225001	3300005995	Soil	MRPAMHHPSLSAVRAEALFVSALQRCEQPSAEQVRQSVAAAVH
Ga0073928_107177302	3300006893	Iron-Sulfur Acid Spring	MRSPMHHLSVGAARADALFVSTLQRSSEPSGGQVRLAVATAVRAFGSRGCAERVAQ
Ga0126384_107250121	3300010046	Tropical Forest Soil	MHRFNISAARADALFVSALQRSEEVSTGQVRQAVATAVRSFGGPGVRRTGSAGVW*
Ga0126379_129485311	3300010366	Tropical Forest Soil	MHHLSISAARADALFVSALQRSEELSTGQVRQAVAAAVRA
Ga0126381_1038438021	3300010376	Tropical Forest Soil	MHHLSISAARADALFVSALQRSEELCTGQVRQAVVAAVRAFGSRGCAER
Ga0151490_13841571	3300011107	Soil	MHHLSISAARADALFVSALQRSEELSTGQVRQAVAAAVRAFGSRGCAER
Ga0137391_113356031	3300011270	Vadose Zone Soil	MQDLSISAVRADALFVSALQRSEEPSTRQVRQAVATAIRAFGGR
Ga0137364_104955882	3300012198	Vadose Zone Soil	MYHLSISAARADALFVSALQRSEELSTGQVRQAVASAVRAFGSK
Ga0137365_113091282	3300012201	Vadose Zone Soil	MHHLSISAARADALFVSALQRSDELSTGQVQQAVAAAVRAFGSQGCAERVTQE
Ga0137381_109368902	3300012207	Vadose Zone Soil	MRPAINHFSISAVRADALFVSALQRSDEPSAAQVREAIAGAVRRFGGRGC
Ga0137376_102614513	3300012208	Vadose Zone Soil	MHHLSISAARADALFVSALQRSEELSTGQVRQAVAA
Ga0137384_101886791	3300012357	Vadose Zone Soil	MRPTRHHISINAVRTEALFVSALQRSDVPSAGQVQQAVAAAVRA
Ga0157369_124533272	3300013105	Corn Rhizosphere	MHHLSISAARADALFVSALQRSEELSTGQVRQAVAAAV
Ga0181522_100365081	3300014657	Bog	MMPPAMDYPSISAIRADALFVSALQRGDHPGAKEVRQAVAAAVGAF
Ga0182030_105708031	3300014838	Bog	MRTVNNFLSISAARADALFVSSLQPSDEPGAGQIRQSVVAAVRQF
Ga0132257_1025181431	3300015373	Arabidopsis Rhizosphere	VAARADALFASALQRSDEPSAGQVRRAIAVAVAAYG
Ga0182041_110607862	3300016294	Soil	MRSAMHHPSISAVRADALFVSALQRCEHPSAGQVRQAVAAAIHTYGQC
Ga0182033_103067431	3300016319	Soil	MRPEMHHLSISAARADALFVSALQRSEELSTGHVRQAVAAAVRAFGSKGCAER
Ga0182033_107199142	3300016319	Soil	MWSAMHELSIRTFQADALFVSVLQRSDEPSAGQVR
Ga0182037_111620422	3300016404	Soil	MWPATHHQTNHAFDADALFVSALQRSDEPSAAQIRQAIAA
Ga0182039_106724152	3300016422	Soil	MWPAQHQSSITAFGADALFVSALQRSDTPTAGQIR
Ga0182039_112222902	3300016422	Soil	MRPAMHHPSISAVRADALFVSALQRCEHPSTGQVRQAVAAAVRAFG
Ga0182038_103829742	3300016445	Soil	MRPAMHHRGMSAIRADALFVSALQRGDHPGAGEVRRAVAAAVEAFGQRGCAA
Ga0187807_12342451	3300017926	Freshwater Sediment	MRPAMHHLSISAIRADALFVSALQRGDHPSAKEVRQAVAAAV
Ga0187806_11946103	3300017928	Freshwater Sediment	MRPAMHHLSISAIRADALFVSALQRGDHPGAQEVRQAVAAAV
Ga0187806_12210351	3300017928	Freshwater Sediment	MRPAMHHLSISAIRSDALFVSALQRGDHPSAREVRQAVDGAVQAFGQRG
Ga0187817_106434851	3300017955	Freshwater Sediment	MRPAMHHLSISVIRADALFVSALQRGDHPSAWEVRQAVAAAVEAFGQRGC
Ga0187776_100491724	3300017966	Tropical Peatland	MQPAMYHLSISAARADALFVSALQRSEELSTGQVQQAVASAVRTFGSRGCAERVAQ
Ga0187776_104122992	3300017966	Tropical Peatland	MRSATHHLSIGTARADALFVSVLQRSGEPSPAEVRDAIAAAVRAFGARGCAA
Ga0187781_110896701	3300017972	Tropical Peatland	MQPAIHHLSISAIRANALFASTLQRGDHPSAKEVRQAVTAVVEAFGQCGC
Ga0187765_109830272	3300018060	Tropical Peatland	MRPTMNHLSIRAVRADALFVSSLQRSDEPSAGQVRLAIAAAVRQF
Ga0187765_109987441	3300018060	Tropical Peatland	MRPEMHHLSVSAARADALFVSALQRSDELNTGQVQQAVASAVRAFGSR
Ga0187769_114199782	3300018086	Tropical Peatland	MRPAMHHLSVSATRADALFVSALQRGDHPGAREVRQAVAAAVGAFG
Ga0187774_108956072	3300018089	Tropical Peatland	MRPAMYHLSISAARADALFVSALQRSEELSTGQVQQAVASAVRTFGSRGC
Ga0210401_110102462	3300020583	Soil	MRPAMHHLSISVIRADALFVSALQRGDHPGAKEVRHAVAVAVGA
Ga0210396_100360095	3300021180	Soil	MRPAIHHLSISAIRADALFVSALQRGDQPGARQVRQAV
Ga0210388_116351491	3300021181	Soil	MRPAMPHLSIGVIQADALFVSALQRGDHPGARQVRQAVAAAVEAFGPRGCAGRV
Ga0210389_103862802	3300021404	Soil	MRPAMHHLSISVIRADALFVSALQRGDHPGAKEVRHAVAVAVG
Ga0210391_103719481	3300021433	Soil	MRPAIHHLSISAIRADALFVSALQSGDQPGARQVRQ
Ga0210391_107914002	3300021433	Soil	MRPAIHHLSISAIRADALFVSALQRGDHPGARQVRQ
Ga0208190_10717281	3300025473	Peatland	MRPVSNFLSTSAARTDALFVSSLQRSDEPSARQIRQSVAAAVRQFGSRGCAGRVAQE
Ga0208219_10287241	3300025625	Arctic Peat Soil	VRTVMNHLSISAARTDALFVSTLRRSDEPSAGQIRQAVAVAVHQFGSRGC
Ga0207653_102121471	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MEPAMHQSSFSAVWADALFVSALQRYDQPSAGQVRQAVAAAEPASQATE
Ga0207693_101249085	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRPAMHHLSISAVRADALFVSALQRSEELDTGQVREAVAMAVRALGGRGCAE
Ga0207663_109969441	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRPAMHHLSISAVRADALFVSALQRSEELDTGQVREAVAMA
Ga0207663_113278011	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRPAMHYLSISAARADALFVSALQRSEELSTGQVRQAVAAAVRAFGSRGCA
Ga0207664_105343104	3300025929	Agricultural Soil	MRPAMHHLSISAVRADALFVSALQRSEELDTGQVR
Ga0257160_10692881	3300026489	Soil	MRPAMDHLSISVIRADALFVSALQRGDHPGAREVRQAVAAAVGAFG
Ga0209773_104064642	3300027829	Bog Forest Soil	MRPAMDHLSISAIRADALFVSALQRGDHPGAREVRQAV
Ga0209773_104469242	3300027829	Bog Forest Soil	MRPAMHHLSISAIRADALFVSALQRGDHPSAQEVRQAVAAAVG
Ga0209701_106028391	3300027862	Vadose Zone Soil	MRPAMHNRSISAVRADALFVSALQRSDEPSAGQVRQAVAAA
Ga0209415_109897571	3300027905	Peatlands Soil	MRPATHHLSISAIRADALFVSALQRSDHLSAKEVRQAVA
Ga0302231_104108071	3300028775	Palsa	MRPAMHRLSIGATRADALFVSALQRGDHPSAKEVRQAV
Ga0302303_101138551	3300028776	Palsa	MSRRLMMRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAA
Ga0302232_1000309113	3300028789	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAATVE
Ga0302232_104154501	3300028789	Palsa	MRPAMHHLSIGAIRADALFVSELQRGDHPSTREVRQAV
Ga0302228_100209851	3300028808	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAAVEAFGQRGCAG
Ga0302235_104886911	3300028877	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAATVEAFGQRGCA
Ga0302229_100418481	3300028879	Palsa	MRPAMHHLSIGATRADALFVSALQRGDHPSAKEVRQAVAAVVEAFGQ
Ga0302229_101139241	3300028879	Palsa	MSRRLMMRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAAVEAFGQRGCAGRV
Ga0311368_102627101	3300029882	Palsa	MSRRLMMRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAAV
Ga0311369_103008503	3300029910	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAA
Ga0311369_106424202	3300029910	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQ
Ga0311371_108311041	3300029951	Palsa	MRPVNNFLSISAARTDALFVSALQRSDEPSAGQIRQSVAAAVRQFG
Ga0302177_104363512	3300030053	Palsa	MRPAMHHLSISAIRADALFVSALQRGDHPSAKEVRQAVTAAVEAFGP
Ga0311370_100531971	3300030503	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAAVEAFGQRGCAGRVAQ
Ga0265393_11825621	3300030586	Soil	MRPAMHHLSISVIRADALFVSALQRGDHPNAKEVRQAVAARKKEEKKK
Ga0311356_1000881113	3300030617	Palsa	MHHLSISAIRADALFVSALQRGDHPSAKEVRQAVAATVE
Ga0311356_111079691	3300030617	Palsa	MRPAMHHLSIGAIRADALFVSELQRGDHPSTREVRQAVAAAVEAFGQRGCAGRVA
Ga0311354_105866501	3300030618	Palsa	MMRPAMHHLSIGAIRADALFVSELQRGDHPSTREVR
Ga0302180_100620581	3300031028	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAAAVEAFGQRGCAGRV
Ga0302307_100263585	3300031233	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAEEVRQ
Ga0302307_103838671	3300031233	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAATVEAFGQRGC
Ga0302325_106760052	3300031234	Palsa	MRPAMHHLIMGAIRADALFVSALQRGDHPSAREVRQAVAAAVGAFGQRGCAGRVAQE
Ga0302325_107243102	3300031234	Palsa	MRPAMHHLSVGSIRADALFVSALQRGDHPSAKEVRQAVAAAVEAFGQRGCAGR
Ga0302326_108282661	3300031525	Palsa	MRPAMHHLSIGAIRADALFVSALQRGDHPSAKEVRQAVAATVEAF
Ga0302326_125217421	3300031525	Palsa	MRPAMHHLSIGAIQADALFVSALQRGDHPSAKEVRQAVAAA
Ga0318534_100436191	3300031544	Soil	MSPAQHKSSITAFRADALFVSALQRSDTPTAGQIRQ
Ga0318555_103462212	3300031640	Soil	MRPEMHYLSISAARADALFVSALQRSEELSTGHVRQAVA
Ga0318555_105038381	3300031640	Soil	MGPAQHHFSSTAFGADALFVSALQRSDAPTAGQIR
Ga0318560_100788123	3300031682	Soil	MRSAMHHLSISAVRADALFVSALQRCEHPSTQQVRQAVAE
Ga0307476_109976422	3300031715	Hardwood Forest Soil	MRSAMHDPGISAVWADALFVSALQRCEHPSTGEVRQAVA
Ga0318492_105847351	3300031748	Soil	MRSAMHHPSISAVRADALFVSALQRCEHPNAGQVRQAVEAAIHAYG
Ga0318509_101466113	3300031768	Soil	MRPAMHHRGMSAIRADALFVSALQRGDNPRAGEVRQAVA
Ga0318509_107026543	3300031768	Soil	MRPMMHHLTTSAIRADALFVSALQHGDHPSAKEVRQAVAAAVETFGQHG
Ga0318521_104020462	3300031770	Soil	MRSAMHHPSISAVRADALFVSALQRCEHPSAGQVRQAVA
Ga0318546_108694481	3300031771	Soil	MRPEMHHLSISAARADALFVSALQRSEELSTGHVRQA
Ga0318546_109910531	3300031771	Soil	MRPMMHHLTTSAIRADALFVSALQHGDHPSAKEVRQAVAAAVETFGQHGCAGRVAQ
Ga0318557_105641281	3300031795	Soil	MRPEMHHLSISAARADALFVSALQRSEELSTGHVRQAV
Ga0318565_105531451	3300031799	Soil	MRSAMHHLSISAVRADALFVSALQRCEHPSTQQVRQAVA
Ga0318497_101647471	3300031805	Soil	MRSAMHHPSISAVRADALFVSALQRCEHPSAGQVRQAVAAAIHTYGQCGCAERMAQ
Ga0318497_108662491	3300031805	Soil	MRPMMHHLTTSAIRADALFVSALQHGDHPSAKEVR
Ga0318511_100928913	3300031845	Soil	MMRPAMHHRGMSAIRADALFVSALQRGDNPRAGEVRQAVAA
Ga0318511_104833171	3300031845	Soil	MRSAMHHPSISAVRADALFVSALQRCEHPSAGEVRQAVAAAIHAYGQCGCAERMAQEF
Ga0306925_106184741	3300031890	Soil	MSPAQHKSSITAFRADALFVSALQRSDTPTAGQIR
Ga0318530_104619533	3300031959	Soil	MRPMMHHLTISAIRADALFVSALQRGDHPSAKEVRQAVTAAVEAFGQRGC
Ga0318563_102201613	3300032009	Soil	MRTTMGSLSISAARTAALFVSALQGSDEPSARQVRQVVAAAE
Ga0318556_101563751	3300032043	Soil	MWPATHHQTNHAFDADALFVSALQRSDEPSAAQIR
Ga0318533_105940162	3300032059	Soil	MWPAQHQSSITAFGADALFVSALQRSDTPTAGQIRQAIDTAVG
Ga0318504_106518731	3300032063	Soil	MRSAMHHLSISAVRADALFVSALQRCEHPSTQQVRQAVAEAVRTFGQQGCADRMAQE
Ga0307470_101604933	3300032174	Hardwood Forest Soil	MRPAAHHLSIRASGADALFVSALQRSDDPSAGQIRQAIAAAIG
Ga0306920_1035726391	3300032261	Soil	MWPAQHQFSITAFGADALFASALQRSDAPTAGQIRHAI
Ga0335085_101744831	3300032770	Soil	MKDPSISEIRADALFVSSLQRTDEPSTGQVRQAVA
Ga0335080_100268947	3300032828	Soil	MRLAMHHLSLSTVRADALFVSALQRGDHPGAGEVRQAV
Ga0335077_100798271	3300033158	Soil	MRPEMHHLSVSAARADALFVSALQRSDELNTGQVQQAVASAVRAFGSRGCAER
Ga0318519_107579522	3300033290	Soil	MRPAMHHPSISAVRADALFVSALQRCEHPSTGQVRQAVAAAVRT
Ga0370483_0260992_447_593	3300034124	Untreated Peat Soil	MRPVNNFLSISAARTDALFVSSLQRSDEPSAGQIRQSVAAAVRQFGRRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082244

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences