Metagenome / Metatranscriptome Family F082433

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082433
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	EAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Number of Associated Samples	77
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	20.35 %
% of genes from short scaffolds (< 2000 bps)	12.39 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (79.646 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (32.743 % of family members)
Environment Ontology (ENVO)	Unclassified (57.522 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.292 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.92% β-sheet: 0.00% Coil/Unstructured: 48.08%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00848	Ring_hydroxyl_A	11.50
PF13507	GATase_5	5.31
PF02700	PurS	4.42
PF01209	Ubie_methyltran	3.54
PF08327	AHSA1	1.77
PF07690	MFS_1	0.88
PF09450	DUF2019	0.88
PF02769	AIRS_C	0.88
PF00127	Copper-bind	0.88
PF00156	Pribosyltran	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	23.01
COG1828	Phosphoribosylformylglycinamidine (FGAM) synthase, PurS subunit	Nucleotide transport and metabolism [F]	4.42
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	3.54
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	3.54

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
All Organisms	root	All Organisms	20.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
cellular organisms	root	All Organisms → cellular organisms	20.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	18.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	18.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.65 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	18.58 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10116271	All Organisms → cellular organisms → Archaea	770	Open in IMG/M
3300002560\|JGI25383J37093_10097163	All Organisms → cellular organisms → Archaea	866	Open in IMG/M
3300002561\|JGI25384J37096_10032620	All Organisms → cellular organisms → Bacteria	2030	Open in IMG/M
3300002562\|JGI25382J37095_10015743	All Organisms → cellular organisms → Archaea	2890	Open in IMG/M
3300005176\|Ga0066679_10512960	All Organisms → cellular organisms → Archaea	781	Open in IMG/M
3300005552\|Ga0066701_10119432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1559	Open in IMG/M
3300007258\|Ga0099793_10225527	All Organisms → cellular organisms → Archaea	901	Open in IMG/M
3300007265\|Ga0099794_10060830	All Organisms → cellular organisms → Archaea	1835	Open in IMG/M
3300009090\|Ga0099827_10742419	All Organisms → cellular organisms → Archaea	849	Open in IMG/M
3300009137\|Ga0066709_100025059	All Organisms → cellular organisms → Archaea	6145	Open in IMG/M
3300009137\|Ga0066709_100334729	All Organisms → cellular organisms → Archaea	2073	Open in IMG/M
3300012189\|Ga0137388_10485422	All Organisms → cellular organisms → Archaea	1147	Open in IMG/M
3300012203\|Ga0137399_10045203	All Organisms → cellular organisms → Archaea	3159	Open in IMG/M
3300012359\|Ga0137385_10304211	All Organisms → cellular organisms → Archaea	1371	Open in IMG/M
3300012360\|Ga0137375_10720249	All Organisms → cellular organisms → Archaea	812	Open in IMG/M
3300021088\|Ga0210404_10505650	All Organisms → cellular organisms → Archaea	683	Open in IMG/M
3300026314\|Ga0209268_1000454	All Organisms → cellular organisms → Archaea	21977	Open in IMG/M
3300026324\|Ga0209470_1013147	All Organisms → cellular organisms → Archaea	4802	Open in IMG/M
3300026480\|Ga0257177_1005407	All Organisms → cellular organisms → Archaea	1550	Open in IMG/M
3300026551\|Ga0209648_10283371	All Organisms → cellular organisms → Archaea	1201	Open in IMG/M
3300027643\|Ga0209076_1001542	All Organisms → cellular organisms → Archaea	4745	Open in IMG/M
3300027671\|Ga0209588_1083898	All Organisms → cellular organisms → Archaea	1029	Open in IMG/M
3300028536\|Ga0137415_10013876	All Organisms → cellular organisms → Archaea	7994	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.92%
Loam	Environmental → Terrestrial → Soil → Loam	6.19%
Sand	Environmental → Terrestrial → Soil → Sand	0.89%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	49.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.59%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	32.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	30.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	18.58%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002407	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010080	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010895	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025164	Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 4	Environmental	Open in IMG/M
3300025167	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_2 (SPAdes)	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025327	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_1 (SPAdes)	Environmental	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026314	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C687J29651_1000144311	3300002407	Soil	IVALWQARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA*
JGI25385J37094_100936652	3300002558	Grasslands Soil	PIESVINQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
JGI25385J37094_101162712	3300002558	Grasslands Soil	TTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ*
JGI25385J37094_102137311	3300002558	Grasslands Soil	QLKSFPGLIEAWTTPGQFDIVALWQARTSEEIIKSAFEKFPTLKGMARSETLLAPTPLFKQ*
JGI25383J37093_100456123	3300002560	Grasslands Soil	SPIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
JGI25383J37093_100971631	3300002560	Grasslands Soil	TPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ*
JGI25384J37096_100326204	3300002561	Grasslands Soil	ETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
JGI25384J37096_101797021	3300002561	Grasslands Soil	QLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
JGI25382J37095_100157437	3300002562	Grasslands Soil	TPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ*
JGI25382J43887_100083601	3300002908	Grasslands Soil	PGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ*
JGI25382J43887_102788512	3300002908	Grasslands Soil	EAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066672_102989351	3300005167	Soil	KSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLKGIARSETLLAPTPLFKQ*
Ga0066679_105129602	3300005176	Soil	LKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Ga0066679_107791852	3300005176	Soil	LKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ
Ga0066679_108262272	3300005176	Soil	IEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLKGIARSETLLAPTPIFKQ*
Ga0066685_108224242	3300005180	Soil	PGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ*
Ga0066678_105677521	3300005181	Soil	TFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066686_101696221	3300005446	Soil	FDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ*
Ga0066686_101712151	3300005446	Soil	PGQFDIVALWQARTSDEIVKSAFEKFSTLHGITRSETLLAPTPLFKQ*
Ga0070707_1007297922	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	FPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIVRSETLLAPTPLFKQ*
Ga0066697_106593092	3300005540	Soil	TSPIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066701_101194321	3300005552	Soil	PGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ*
Ga0066701_105236731	3300005552	Soil	WQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066692_102404122	3300005555	Soil	IVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066707_100314401	3300005556	Soil	IEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPFFKQ*
Ga0066691_109465791	3300005586	Soil	KSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ*
Ga0066706_115054701	3300005598	Soil	FDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPFFKQ*
Ga0066696_100575661	3300006032	Soil	TSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ*
Ga0066656_107891422	3300006034	Soil	ETFVNQLKTFPGLIEAWTTPGQFDIVALWQAKTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066665_105849822	3300006796	Soil	DVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0066665_110342731	3300006796	Soil	KNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0066665_111421921	3300006796	Soil	SFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0066659_106893352	3300006797	Soil	TTPIESVINQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0099793_102255272	3300007258	Vadose Zone Soil	IVALWQARTSDEIVKSAFEKFPTLQGITRSETLLAPTPLFKQ*
Ga0099794_100608301	3300007265	Vadose Zone Soil	VVNQLKTFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKLSTLHGITRSETLLAPTPLFKQ*
Ga0099794_103060582	3300007265	Vadose Zone Soil	VALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0099794_104958282	3300007265	Vadose Zone Soil	WTTPGQFDIVALWQARTSDEIVKSAFEKFPTLHGIIRSETLLSPTPLFKQ*
Ga0066710_1001373961	3300009012	Grasslands Soil	QFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPFFKQ
Ga0066710_1039990901	3300009012	Grasslands Soil	QFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0099828_109078361	3300009089	Vadose Zone Soil	SPIETVVNQLKTFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLKGIAHSETLLAPTPLFKQ*
Ga0099828_117712221	3300009089	Vadose Zone Soil	PGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLHGIIRSETLLAPTPLFKQ*
Ga0099827_102800811	3300009090	Vadose Zone Soil	EAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLKGIAHSETLLAPTPLFKQ*
Ga0099827_107424192	3300009090	Vadose Zone Soil	FPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKLSTLHGITRSETLLAPTPLFKQ*
Ga0066709_1000250599	3300009137	Grasslands Soil	QFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ*
Ga0066709_1003347291	3300009137	Grasslands Soil	QFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPFFKQ*
Ga0066709_1008877472	3300009137	Grasslands Soil	DVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA*
Ga0105066_10407421	3300009822	Groundwater Sand	TVPGPFDIVALWQARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA*
Ga0127448_1138011	3300010080	Grasslands Soil	QFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA*
Ga0127472_10393661	3300010106	Grasslands Soil	PGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA*
Ga0127488_10517251	3300010122	Grasslands Soil	ESVINQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTSIARSETLLSYAPFFKA*
Ga0134088_105705172	3300010304	Grasslands Soil	FPGLIEAWTTPGQFDIVALWQAKTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0138113_1765001	3300010895	Grasslands Soil	LWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0137388_104854221	3300012189	Vadose Zone Soil	TPGQFDVVALWQARTSDEIVKSAFEKFPSLQGITRSETLLAPTPLFKQ*
Ga0137363_115389762	3300012202	Vadose Zone Soil	ALWQARTSDEIVKSAFEKFPTLQGISRSETLLAPTPLFKQ*
Ga0137399_100452031	3300012203	Vadose Zone Soil	PGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137399_109201112	3300012203	Vadose Zone Soil	GQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137399_110806322	3300012203	Vadose Zone Soil	NQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137381_108344301	3300012207	Vadose Zone Soil	IESVINQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA*
Ga0137381_110474181	3300012207	Vadose Zone Soil	SFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGISRSETLLAPTPLFKQ*
Ga0137381_110594011	3300012207	Vadose Zone Soil	SFPGLVEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137379_106364411	3300012209	Vadose Zone Soil	FPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0137377_109419412	3300012211	Vadose Zone Soil	FNVTTPIESVINQLKSFPGLIEAWTVPGQFDVLALWQAKNSNEIVKSAFEKFPSLTGIARSETLLSYAPFYKA*
Ga0137387_111106722	3300012349	Vadose Zone Soil	IEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGISRSETLLAPTPLFKQ*
Ga0137386_109084551	3300012351	Vadose Zone Soil	TPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137371_112348561	3300012356	Vadose Zone Soil	TTPIESVINQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA*
Ga0137384_103096923	3300012357	Vadose Zone Soil	QFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137385_100628781	3300012359	Vadose Zone Soil	GLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137385_103042113	3300012359	Vadose Zone Soil	TTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137385_107678341	3300012359	Vadose Zone Soil	LWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137375_107202492	3300012360	Vadose Zone Soil	PIETFVNQLKTFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKL*
Ga0137390_100571061	3300012363	Vadose Zone Soil	TSDEIVKSAFEKFPTLQGLTRSETLLAPTPLFKQ*
Ga0137396_101259871	3300012918	Vadose Zone Soil	PGQFDIVALWQARTSDEIVKSAFEKFPTLQGITRSETLLAPTPLFKQ*
Ga0137396_103010111	3300012918	Vadose Zone Soil	PIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ*
Ga0137396_111933131	3300012918	Vadose Zone Soil	ALWQAKTSDEIVKSAFEKLSTLHGITRSETLLAPTPLFKQ*
Ga0134075_103956001	3300014154	Grasslands Soil	QAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0134073_103338692	3300015356	Grasslands Soil	IEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA*
Ga0134074_12118182	3300017657	Grasslands Soil	SPIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0134083_104500651	3300017659	Grasslands Soil	DVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA
Ga0066655_108827491	3300018431	Grasslands Soil	DVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA
Ga0066655_110439541	3300018431	Grasslands Soil	TPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0210404_105056502	3300021088	Soil	IVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Ga0137417_12839841	3300024330	Vadose Zone Soil	NQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ
Ga0209521_103771082	3300025164	Soil	PFDIVALWQARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA
Ga0209642_101032694	3300025167	Soil	LWQARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA
Ga0209642_102185851	3300025167	Soil	DIVALWQARTADEIVKSAFEKFPSLQGIARSETLLASTPIFRA
Ga0209431_112393562	3300025313	Soil	ARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA
Ga0209341_106322721	3300025325	Soil	LKSFSGLVEAWTVPGPFDIVALWQARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA
Ga0209751_103270693	3300025327	Soil	WQARTTDEIVKSAFEKFPTLHGIARSETLLAHAPIFKA
Ga0209350_11373671	3300026277	Grasslands Soil	VTSPIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0209237_12595001	3300026297	Grasslands Soil	NVTSPIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLKGVARSETLLAPTPFFKQ
Ga0209236_12871281	3300026298	Grasslands Soil	FVNQLKSFPGLIEAWTTPGQFDIVALWQARTSEEIIKSAFEKFPTLKGMARSETLLAPTPLFKQ
Ga0209055_12311311	3300026309	Soil	QLKSFPGLVEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFK
Ga0209268_100045432	3300026314	Soil	NQLKSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA
Ga0209470_10131471	3300026324	Soil	TTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0209470_10296211	3300026324	Soil	QFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA
Ga0209470_11705291	3300026324	Soil	QFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA
Ga0209158_12418301	3300026333	Soil	EAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Ga0209377_10207991	3300026334	Soil	PIETFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Ga0209377_13304071	3300026334	Soil	QARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ
Ga0209057_100345614	3300026342	Soil	GQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0209057_10199516	3300026342	Soil	KSFPGLIEAWTVPGQFDVLALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFYKA
Ga0257177_10054071	3300026480	Soil	FPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Ga0209806_12410491	3300026529	Soil	GLIEAWTTPGQFDIVALWQARTSDEIVKSSFEKFSTLHGITRSETLLAPTPLFKQ
Ga0209056_101240633	3300026538	Soil	LIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0209056_104855342	3300026538	Soil	LALWQAKNSDEIVKSAFEKFPSLTGIARSETLLSYAPFFKA
Ga0209474_105294092	3300026550	Soil	VNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGMARSETLLAPTPLFKQ
Ga0209648_102833711	3300026551	Grasslands Soil	TPFQTFVNQLKSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGISRSETLLAPTPLFKQ
Ga0209076_10015429	3300027643	Vadose Zone Soil	ALWQARTSDEIVKSAFEKFPTLQGITHSETLLAPTPLFKQ
Ga0209588_10837872	3300027671	Vadose Zone Soil	KSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGIARSETLLAPTPLFKQ
Ga0209588_10838981	3300027671	Vadose Zone Soil	PGQFDIVALWQARTSDEIVKSAFEKLSTLHGITRSETLLAPTPLFKQ
Ga0137415_100138761	3300028536	Vadose Zone Soil	TPGQFDIVALWQARTSDEIVKSAFEKLSTLHGITRSETLLAPTPLFKQ
Ga0137415_100184841	3300028536	Vadose Zone Soil	KSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGLTRSETLLAPTPFFKQ
Ga0137415_103493641	3300028536	Vadose Zone Soil	KSFPGLIEAWTTPGQFDIVALWQARTSDEIVKSAFEKFPTLQGITHSETLLAPTPLFKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082433

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences