Basic Information | |
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Family ID | F082546 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 113 |
Average Sequence Length | 50 residues |
Representative Sequence | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLTASMIKLQNMKN |
Number of Associated Samples | 78 |
Number of Associated Scaffolds | 113 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 93.81 % |
% of genes near scaffold ends (potentially truncated) | 11.50 % |
% of genes from short scaffolds (< 2000 bps) | 78.76 % |
Associated GOLD sequencing projects | 67 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.71 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (69.912 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (45.133 % of family members) |
Environment Ontology (ENVO) | Unclassified (83.186 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (91.150 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.90% β-sheet: 0.00% Coil/Unstructured: 48.10% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.71 |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Marine Seawater Surface Seawater Seawater Marine Aqueous Seawater Seawater Salt Marsh Marine Pelagic Marine Seawater Seawater Deep Subsurface |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI25127J35165_10003606 | 3300002482 | Marine | MKIESKAIIQRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSAATIKLASSK* |
JGI25127J35165_10270003 | 3300002482 | Marine | MKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMKILYAQLTAATIKLHNMTH* |
JGI25128J35275_10344284 | 3300002488 | Marine | MKIESKAIIQRRIRNIEADIKSVRNNGNTLRMRLLYAQLSAATIKLASS* |
JGI25133J35611_101421472 | 3300002514 | Marine | MKIESKAIIRRRIANIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN* |
Ga0066867_102052251 | 3300005400 | Marine | IRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN* |
Ga0066867_103496232 | 3300005400 | Marine | MKIESKAIIRRRIGNIKADIKSVRNSGNTFRMIILYHQLTASLIKLENMKN* |
Ga0066849_100710745 | 3300005430 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMRILYRQLTASLIKLENMKN* |
Ga0098038_10335386 | 3300006735 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTANLIKLQNMKN* |
Ga0098038_11060912 | 3300006735 | Marine | MKIESKAIIRRRIRNIEQDIKSVRNSGDTFRMIILYRQLTASMIKLQNMKN* |
Ga0098038_11544663 | 3300006735 | Marine | MKIESKAIIRRRIANIERDIQNVRNSGNTFRMIILYRQLTASMIKLQNMKN* |
Ga0098038_11647293 | 3300006735 | Marine | MKIESKSILRRRIRNIEADIKACRNSGNTLRMRLLYAQLSATT |
Ga0098038_12109633 | 3300006735 | Marine | MKIESKAIIRRRIANIEQDIKSVRNSGNTFRMIILYRQLTANLIKLENMKN* |
Ga0098037_10207654 | 3300006737 | Marine | MKIESKSILRRRIRNIEADIKACRNSGNTLRMRLLYAQLSATTIKLASTK* |
Ga0098037_10906053 | 3300006737 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTANLIKLENMKN* |
Ga0098037_11168312 | 3300006737 | Marine | MKIESKAIIRRRIANIEQDIKSVRNSGDTFRMIILYRQLTASMIKLQNMKN* |
Ga0098040_10220582 | 3300006751 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN* |
Ga0098040_10365854 | 3300006751 | Marine | MKIESKAIIRRRIANIERDIKNVRNSGNTFRMIILYRQLTASMIKLQNMKN* |
Ga0098044_10187404 | 3300006754 | Marine | MKIESKAIIRRRIANIERDIKNVRNSGNTFRMIILYRQLTASMIKLHNMKN* |
Ga0098044_13114212 | 3300006754 | Marine | MKIESKAIVSRRIRNIQQAIKYARHNGDAFRMIILYRQLTASKIKLQNMKN* |
Ga0098054_12758253 | 3300006789 | Marine | MKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYRQLTANLIKLENM |
Ga0098074_11698801 | 3300006790 | Marine | MKMESKAIISRRIRNIKRDIQSCRNSGNIFAMRILYAQLSQARIKLVAMKN* |
Ga0098055_10829384 | 3300006793 | Marine | MKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYQQLTASLIKLENMKN* |
Ga0070749_100373984 | 3300006802 | Aqueous | MKIETKATISRRIRNLEADIKSCRNSGNTLRMKILYSQLAQAQCKLVAMKN* |
Ga0098041_11019593 | 3300006928 | Marine | MKIESKAIIQRRIRNIEQDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN* |
Ga0098036_11004402 | 3300006929 | Marine | MKIESKAIISRRIRNIQQAIKYARHNGDAFRMIILYRQLTASKIKLQNMKN* |
Ga0098046_11345661 | 3300006990 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMRILY |
Ga0099849_10311358 | 3300007539 | Aqueous | MKIESKAIISRRIRNLERDIESCRNSGNTYRMRILYAQLSQARIKLVAMKH* |
Ga0099849_10964183 | 3300007539 | Aqueous | MRIEPKAIIRQRIRNIKADIKSCRNSGNTLRMRILYAQLTSAIIKLNNMTH* |
Ga0099850_14004541 | 3300007960 | Aqueous | RRIRNLEADIKSCRNSGNTLRMKILYSQLAQAQCKLVAMKN* |
Ga0098052_10994141 | 3300008050 | Marine | MKIESKAIISRRIRNIQQDIKSVRNSGNTFRMIILYRQLTASKIKLQNMKN* |
Ga0098052_12076082 | 3300008050 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTACKIKLQNMKN* |
Ga0118728_10142857 | 3300009129 | Marine | MKIESKAIISRRIRNLQRDIKQCRNNPTSFRMQVLYRQLAAAQIKLVTMKN* |
Ga0115547_11225272 | 3300009426 | Pelagic Marine | MKIESKAIISRRIRNLRTDIKSVRNSGNTMRMIILYRQLTASLIKLENMKN* |
Ga0115545_10706501 | 3300009433 | Pelagic Marine | MKIESKAIIQRRIRNIEQDIKSVRNSGDTLRMRILYRQLTASMIKLQIIKN* |
Ga0115011_121546152 | 3300009593 | Marine | MKIESKAIIRRRIANIEQDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN* |
Ga0114933_105026651 | 3300009703 | Deep Subsurface | MKIESKAIISRRIRNIKADIKSCRNSGNTLRMRMLYSQLSAAAIKLASSK* |
Ga0115012_106130102 | 3300009790 | Marine | MKIESKAIIRRRIANLEKDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN* |
Ga0098056_11011971 | 3300010150 | Marine | MKIESKAIIRRRIGIIRAYIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN* |
Ga0098059_10841952 | 3300010153 | Marine | MKIESKAIISRRIRNIQQDIKSVRNSGNTFRMIILYRQLAHARVKLVATKN* |
Ga0098059_11908243 | 3300010153 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTANLIKLENMKN* |
Ga0098059_13372901 | 3300010153 | Marine | MKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYRQLTASLIKLENMKN* |
Ga0160423_100544566 | 3300012920 | Surface Seawater | MKIESKAILRRRIRNIEQDIKACRNSGNTLRMRVLYTQLSATTIKLASTKN* |
Ga0160423_100715173 | 3300012920 | Surface Seawater | MKIESKATIRRRIRNIEQDIKSVRNSGNTYRMRILYAQLTAAQIKLTNMTH* |
Ga0160423_103825742 | 3300012920 | Surface Seawater | MKIEKKAIIQRRIRNIKADIKSCRNSGNTYRMRILYAQLTAATIKLHNMTH* |
Ga0163110_116207181 | 3300012928 | Surface Seawater | MKIESKAILRRRIRNIEQDIKACRNSGNTLRMRLLYAQLSATTIKLGSL* |
Ga0163179_107515312 | 3300012953 | Seawater | MKIESKAIIRRRIRNLEQDIKNVRNSGDTFRMRILYRQLTASLIKLQNMKN* |
Ga0163179_109145032 | 3300012953 | Seawater | MKIESKAILRRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSATTIKLASTK* |
Ga0163111_104408562 | 3300012954 | Surface Seawater | MKIERKAIIQRRIRNIEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH* |
Ga0181373_10278472 | 3300017721 | Marine | MKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYRQLTASMIKLENMKN |
Ga0181565_101873821 | 3300017818 | Salt Marsh | MKIESKAIISRRIRNLERDIKSCRNSGNTLRLRILYAQLSQARIKLVAMKN |
Ga0181583_107935142 | 3300017952 | Salt Marsh | MKIETKAVIRRRIRNIEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0181571_100920252 | 3300017957 | Salt Marsh | MKIESKAIISRRIRNLERDIKSCRNSGNTLRLKVLYAQLSQARIKLVAMKN |
Ga0181590_103637713 | 3300017967 | Salt Marsh | MKIEKKAVIRRRIQQLEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0181585_101695023 | 3300017969 | Salt Marsh | MKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0181591_107249502 | 3300018424 | Salt Marsh | MKIEKKAVIRRRIQQLEADIKAVRNSGNTYRMRILYAQLSAATIKLVNMTR |
Ga0181568_110071512 | 3300018428 | Salt Marsh | MKIETKAVIRRRIRNIKADIQSVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0192869_101048812 | 3300019032 | Marine | MKIESKAILRRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSATTIKLASTK |
Ga0194023_10152293 | 3300019756 | Freshwater | MKIESKAIISRRIRNIEKDIESCRNSGNTFRMRILYAQLSQARIKLVAMKR |
Ga0206125_100937212 | 3300020165 | Seawater | MKIESKAVIRRRIANIEQDIKAVRNSGNNFRMIILYRQLTASMIKLQNMKN |
Ga0206124_101551302 | 3300020175 | Seawater | MKIESKAIIRRRIGNIRADIKSVRNSGNTMRMIILYRQLTASLIKLENMKN |
Ga0211591_10399403 | 3300020280 | Marine | MKIEKKAIIQRRIRNIKADIKSCRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0211527_100252685 | 3300020378 | Marine | MKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMRILYAQLSATTIKLVNMKN |
Ga0211527_100880032 | 3300020378 | Marine | MKIEKKAIIQRRIRNIKADIKSCRNSGNTLRMRILYAQLTAATIKLVNMTH |
Ga0211583_100487322 | 3300020397 | Marine | MKIEKKAIIRRRIRNIKADIQAVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0211617_100204884 | 3300020401 | Marine | MKIEKKAIIRRRIRNIEQDIKSVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0211617_101114353 | 3300020401 | Marine | IESKAILRRRIRNIEQDIKACRNSGNTLRMRLLYAQLSATTIKLASS |
Ga0211532_101035602 | 3300020403 | Marine | MKIEKKAIIRRRIRNIKADIQSCRNSGNTLRMRILYAQLTAATIKLHNMTH |
Ga0211587_101493142 | 3300020411 | Marine | MKIESKAILRRRIRNIEADIKAVRNSGNTYRMRILYAQLTATTIKLVNMKN |
Ga0211523_100496863 | 3300020414 | Marine | MKIEKKAIIRRRIRNIKADIKSVRNSGDTYRMRILYAQLTAATIKLHNMTH |
Ga0211523_102228792 | 3300020414 | Marine | MKIESKAILRRRIRNIEADIKAVRNSGNTYRMRILYAQLSATTIKLVNMKN |
Ga0211521_104458352 | 3300020428 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTASLIKLENMKN |
Ga0211622_104310951 | 3300020430 | Marine | MKIESRAIIQRRIRNIEQDIKAVRNSGNTLRMRVLYAQLSAATIKLASTKK |
Ga0211539_100948903 | 3300020437 | Marine | MKIESKAIIQRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSAATIKLASSK |
Ga0211539_101453892 | 3300020437 | Marine | MKIEKKAVIRRRIRNIKADIQACRNSGNTLRMRVLYAQLTAATIKLHNMTH |
Ga0211576_100110677 | 3300020438 | Marine | MKIESKAIIRRRIGNIERDIKNVRNSGDTFRMIILYRQLTANLIKLENMKN |
Ga0211638_104849712 | 3300020448 | Marine | MKIESKAVIQRRIRNIEQDIQSVRNSGNTLRMRVLYAQLTASIIKLQNMKN |
Ga0211543_100766112 | 3300020470 | Marine | MKIESKAIIRRRIQQLEADIKSVRNSGNTYRMRILYAQLSAATIKLVNMKN |
Ga0211614_100621584 | 3300020471 | Marine | MKIESKAIIRRRIANIERDIKSVRNSGNTFRMIILYRQLTANMIKLQNMKN |
Ga0213858_103614632 | 3300021356 | Seawater | MKIETKAVIRRRIRNIQADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH |
Ga0224906_10042255 | 3300022074 | Seawater | MKIESKAILRRRIRNIERDIKSVRNSGNTLRMRILYAQLSATTIKLASSK |
Ga0196905_10194294 | 3300022198 | Aqueous | MKIETKATISRRIRNLEADIKSCRNSGNTLRMKILYSQLAQAQCKLVAMKN |
(restricted) Ga0233433_100614611 | 3300022931 | Seawater | MQIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSS |
(restricted) Ga0233433_102037793 | 3300022931 | Seawater | MKIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQ |
(restricted) Ga0233433_103554142 | 3300022931 | Seawater | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLTASMIKLQNMKN |
(restricted) Ga0233433_104197822 | 3300022931 | Seawater | IESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSSLIKLENMKN |
Ga0255782_101701093 | 3300023105 | Salt Marsh | IESKAIISRRIRNLERDIKSCRNSGNTLRLKVLYAQLSQARIKLVAMKN |
(restricted) Ga0233439_100294581 | 3300024261 | Seawater | MKIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSSLIKLENMKN |
(restricted) Ga0233439_101041742 | 3300024261 | Seawater | MQIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSSLIKLENMKN |
(restricted) Ga0233434_12845781 | 3300024327 | Seawater | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLT |
Ga0208668_10348622 | 3300025078 | Marine | MKIESKAIISRRIRNIQQDIKSVRNSGPTFRMIILYRQLTASKVKLQNMKN |
Ga0208157_10731762 | 3300025086 | Marine | MKIESKAIIRRRIANIERDIQNVRNSGNTFRMIILYRQLTASMIKLQNMKN |
Ga0208157_11102042 | 3300025086 | Marine | MKIESKSILRRRIRNIEADIKACRNSGNTLRMRLLYAQLSATTIKLASTK |
Ga0208011_10109456 | 3300025096 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN |
Ga0208011_10420092 | 3300025096 | Marine | MKIESKAIIRRRIANIERDIKNVRNSGNTFRMIILYRQLTASMIKLQNMKN |
Ga0208666_10655753 | 3300025102 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTANLIKLENMKN |
Ga0208666_11218602 | 3300025102 | Marine | MKIESKSILRRRIRNIEADIKSCRNSGNTLRMRLLYAQLSATTIKLASTK |
Ga0208158_11643631 | 3300025110 | Marine | MKIESKAIIQRRIRNIEQDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN |
Ga0209348_10097233 | 3300025127 | Marine | MKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMKILYAQLTAATIKLHNMTH |
Ga0208919_11070121 | 3300025128 | Marine | MKIESKAIISRRIRNIQQDIKSVRNSGNTFRMIILYRQLAHARVKLVATKN |
Ga0209232_100120724 | 3300025132 | Marine | MKIESKAIIQRRIRNIEADIKSVRNNGNTLRMRLLYAQLSAATIKLASS |
Ga0209232_10299825 | 3300025132 | Marine | MKIESKAIIQRRIANIERDIKSVRNSGNTLRMRLLYAQLSAATIKLASTKN |
Ga0209232_10334284 | 3300025132 | Marine | MKIESKAILQRRIRTIKADIQSCRNSGNTLRIRLLYAQLSATTIKLASTK |
Ga0209232_10349954 | 3300025132 | Marine | MKIESKAIIQRRIANIERDIQNVRNSGNTFRMIILYRQLTASMIKLQNMKN |
Ga0208162_10062139 | 3300025674 | Aqueous | MKIESKAIISRRIRNLERDIESCRNSGNTYRMRILYAQLSQARIKLVAMKH |
Ga0208162_10497852 | 3300025674 | Aqueous | MKIESKAVIRRRIQQLEADIKAVRNSGNTYRMRILYAQLSAATIKLVNMKH |
Ga0208162_11896681 | 3300025674 | Aqueous | MRIEPKAIIRQRIRNIKADIKSCRNSGNTLRMRILYAQLTSAIIKLNNMTH |
Ga0208407_11828052 | 3300026257 | Marine | MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMRILYRQLTASLIKLENMKN |
Ga0208411_11979111 | 3300026279 | Marine | MKIESKAIIRRRIGNIKADIKSVRNSGNTFRMIILYHQLTASLIKLENMKN |
Ga0209404_105078151 | 3300027906 | Marine | MKIESKAIIRRRIANIERDIQNVRNSGNTFRMIILYRQLTASMI |
Ga0183748_10109974 | 3300029319 | Marine | MKIESKAIISRRIRNIKADIKACRNSGNTLRMRMLYAQLSAATIKLASTK |
Ga0183748_10124595 | 3300029319 | Marine | MKIENRATIRRRIGQLEQDIKSVRNSGNTLRMRLLYAQLSAATIKLASTKN |
Ga0183748_10361242 | 3300029319 | Marine | MKIESKAIIQRRIRNIERDIKSVRNSGNTYRMRVLYAQLTQAQIKLVAMKN |
Ga0315331_100679225 | 3300031774 | Seawater | MKIESKAIVSRRIRNLRADIKSVRNSGNTVRMIILYRQLTASLIKLENMKN |
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