NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F082546

Metagenome / Metatranscriptome Family F082546

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F082546
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 50 residues
Representative Sequence MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLTASMIKLQNMKN
Number of Associated Samples 78
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 93.81 %
% of genes near scaffold ends (potentially truncated) 11.50 %
% of genes from short scaffolds (< 2000 bps) 78.76 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (69.912 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(45.133 % of family members)
Environment Ontology (ENVO) Unclassified
(83.186 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.150 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.90%    β-sheet: 0.00%    Coil/Unstructured: 48.10%
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Variant

5101520253035404550MKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLTASMIKLQNMKNSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.71
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Structural matches with SCOPe domains



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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
30.1%69.9%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Freshwater
Marine
Seawater
Surface Seawater
Seawater
Marine
Aqueous
Seawater
Seawater
Salt Marsh
Marine
Pelagic Marine
Seawater
Seawater
Deep Subsurface
45.1%4.4%6.2%7.1%7.1%19.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI25127J35165_100036063300002482MarineMKIESKAIIQRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSAATIKLASSK*
JGI25127J35165_102700033300002482MarineMKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMKILYAQLTAATIKLHNMTH*
JGI25128J35275_103442843300002488MarineMKIESKAIIQRRIRNIEADIKSVRNNGNTLRMRLLYAQLSAATIKLASS*
JGI25133J35611_1014214723300002514MarineMKIESKAIIRRRIANIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN*
Ga0066867_1020522513300005400MarineIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN*
Ga0066867_1034962323300005400MarineMKIESKAIIRRRIGNIKADIKSVRNSGNTFRMIILYHQLTASLIKLENMKN*
Ga0066849_1007107453300005430MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMRILYRQLTASLIKLENMKN*
Ga0098038_103353863300006735MarineMKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTANLIKLQNMKN*
Ga0098038_110609123300006735MarineMKIESKAIIRRRIRNIEQDIKSVRNSGDTFRMIILYRQLTASMIKLQNMKN*
Ga0098038_115446633300006735MarineMKIESKAIIRRRIANIERDIQNVRNSGNTFRMIILYRQLTASMIKLQNMKN*
Ga0098038_116472933300006735MarineMKIESKSILRRRIRNIEADIKACRNSGNTLRMRLLYAQLSATT
Ga0098038_121096333300006735MarineMKIESKAIIRRRIANIEQDIKSVRNSGNTFRMIILYRQLTANLIKLENMKN*
Ga0098037_102076543300006737MarineMKIESKSILRRRIRNIEADIKACRNSGNTLRMRLLYAQLSATTIKLASTK*
Ga0098037_109060533300006737MarineMKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTANLIKLENMKN*
Ga0098037_111683123300006737MarineMKIESKAIIRRRIANIEQDIKSVRNSGDTFRMIILYRQLTASMIKLQNMKN*
Ga0098040_102205823300006751MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN*
Ga0098040_103658543300006751MarineMKIESKAIIRRRIANIERDIKNVRNSGNTFRMIILYRQLTASMIKLQNMKN*
Ga0098044_101874043300006754MarineMKIESKAIIRRRIANIERDIKNVRNSGNTFRMIILYRQLTASMIKLHNMKN*
Ga0098044_131142123300006754MarineMKIESKAIVSRRIRNIQQAIKYARHNGDAFRMIILYRQLTASKIKLQNMKN*
Ga0098054_127582533300006789MarineMKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYRQLTANLIKLENM
Ga0098074_116988013300006790MarineMKMESKAIISRRIRNIKRDIQSCRNSGNIFAMRILYAQLSQARIKLVAMKN*
Ga0098055_108293843300006793MarineMKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYQQLTASLIKLENMKN*
Ga0070749_1003739843300006802AqueousMKIETKATISRRIRNLEADIKSCRNSGNTLRMKILYSQLAQAQCKLVAMKN*
Ga0098041_110195933300006928MarineMKIESKAIIQRRIRNIEQDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN*
Ga0098036_110044023300006929MarineMKIESKAIISRRIRNIQQAIKYARHNGDAFRMIILYRQLTASKIKLQNMKN*
Ga0098046_113456613300006990MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMRILY
Ga0099849_103113583300007539AqueousMKIESKAIISRRIRNLERDIESCRNSGNTYRMRILYAQLSQARIKLVAMKH*
Ga0099849_109641833300007539AqueousMRIEPKAIIRQRIRNIKADIKSCRNSGNTLRMRILYAQLTSAIIKLNNMTH*
Ga0099850_140045413300007960AqueousRRIRNLEADIKSCRNSGNTLRMKILYSQLAQAQCKLVAMKN*
Ga0098052_109941413300008050MarineMKIESKAIISRRIRNIQQDIKSVRNSGNTFRMIILYRQLTASKIKLQNMKN*
Ga0098052_120760823300008050MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTACKIKLQNMKN*
Ga0118728_101428573300009129MarineMKIESKAIISRRIRNLQRDIKQCRNNPTSFRMQVLYRQLAAAQIKLVTMKN*
Ga0115547_112252723300009426Pelagic MarineMKIESKAIISRRIRNLRTDIKSVRNSGNTMRMIILYRQLTASLIKLENMKN*
Ga0115545_107065013300009433Pelagic MarineMKIESKAIIQRRIRNIEQDIKSVRNSGDTLRMRILYRQLTASMIKLQIIKN*
Ga0115011_1215461523300009593MarineMKIESKAIIRRRIANIEQDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN*
Ga0114933_1050266513300009703Deep SubsurfaceMKIESKAIISRRIRNIKADIKSCRNSGNTLRMRMLYSQLSAAAIKLASSK*
Ga0115012_1061301023300009790MarineMKIESKAIIRRRIANLEKDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN*
Ga0098056_110119713300010150MarineMKIESKAIIRRRIGIIRAYIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN*
Ga0098059_108419523300010153MarineMKIESKAIISRRIRNIQQDIKSVRNSGNTFRMIILYRQLAHARVKLVATKN*
Ga0098059_119082433300010153MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTANLIKLENMKN*
Ga0098059_133729013300010153MarineMKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYRQLTASLIKLENMKN*
Ga0160423_1005445663300012920Surface SeawaterMKIESKAILRRRIRNIEQDIKACRNSGNTLRMRVLYTQLSATTIKLASTKN*
Ga0160423_1007151733300012920Surface SeawaterMKIESKATIRRRIRNIEQDIKSVRNSGNTYRMRILYAQLTAAQIKLTNMTH*
Ga0160423_1038257423300012920Surface SeawaterMKIEKKAIIQRRIRNIKADIKSCRNSGNTYRMRILYAQLTAATIKLHNMTH*
Ga0163110_1162071813300012928Surface SeawaterMKIESKAILRRRIRNIEQDIKACRNSGNTLRMRLLYAQLSATTIKLGSL*
Ga0163179_1075153123300012953SeawaterMKIESKAIIRRRIRNLEQDIKNVRNSGDTFRMRILYRQLTASLIKLQNMKN*
Ga0163179_1091450323300012953SeawaterMKIESKAILRRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSATTIKLASTK*
Ga0163111_1044085623300012954Surface SeawaterMKIERKAIIQRRIRNIEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH*
Ga0181373_102784723300017721MarineMKIESKAIISRRIRNLRADIKSVRNSGNTMRMIILYRQLTASMIKLENMKN
Ga0181565_1018738213300017818Salt MarshMKIESKAIISRRIRNLERDIKSCRNSGNTLRLRILYAQLSQARIKLVAMKN
Ga0181583_1079351423300017952Salt MarshMKIETKAVIRRRIRNIEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0181571_1009202523300017957Salt MarshMKIESKAIISRRIRNLERDIKSCRNSGNTLRLKVLYAQLSQARIKLVAMKN
Ga0181590_1036377133300017967Salt MarshMKIEKKAVIRRRIQQLEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0181585_1016950233300017969Salt MarshMKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0181591_1072495023300018424Salt MarshMKIEKKAVIRRRIQQLEADIKAVRNSGNTYRMRILYAQLSAATIKLVNMTR
Ga0181568_1100715123300018428Salt MarshMKIETKAVIRRRIRNIKADIQSVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0192869_1010488123300019032MarineMKIESKAILRRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSATTIKLASTK
Ga0194023_101522933300019756FreshwaterMKIESKAIISRRIRNIEKDIESCRNSGNTFRMRILYAQLSQARIKLVAMKR
Ga0206125_1009372123300020165SeawaterMKIESKAVIRRRIANIEQDIKAVRNSGNNFRMIILYRQLTASMIKLQNMKN
Ga0206124_1015513023300020175SeawaterMKIESKAIIRRRIGNIRADIKSVRNSGNTMRMIILYRQLTASLIKLENMKN
Ga0211591_103994033300020280MarineMKIEKKAIIQRRIRNIKADIKSCRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0211527_1002526853300020378MarineMKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMRILYAQLSATTIKLVNMKN
Ga0211527_1008800323300020378MarineMKIEKKAIIQRRIRNIKADIKSCRNSGNTLRMRILYAQLTAATIKLVNMTH
Ga0211583_1004873223300020397MarineMKIEKKAIIRRRIRNIKADIQAVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0211617_1002048843300020401MarineMKIEKKAIIRRRIRNIEQDIKSVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0211617_1011143533300020401MarineIESKAILRRRIRNIEQDIKACRNSGNTLRMRLLYAQLSATTIKLASS
Ga0211532_1010356023300020403MarineMKIEKKAIIRRRIRNIKADIQSCRNSGNTLRMRILYAQLTAATIKLHNMTH
Ga0211587_1014931423300020411MarineMKIESKAILRRRIRNIEADIKAVRNSGNTYRMRILYAQLTATTIKLVNMKN
Ga0211523_1004968633300020414MarineMKIEKKAIIRRRIRNIKADIKSVRNSGDTYRMRILYAQLTAATIKLHNMTH
Ga0211523_1022287923300020414MarineMKIESKAILRRRIRNIEADIKAVRNSGNTYRMRILYAQLSATTIKLVNMKN
Ga0211521_1044583523300020428MarineMKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTASLIKLENMKN
Ga0211622_1043109513300020430MarineMKIESRAIIQRRIRNIEQDIKAVRNSGNTLRMRVLYAQLSAATIKLASTKK
Ga0211539_1009489033300020437MarineMKIESKAIIQRRIRNIEQDIKSCRNSGNTLRMRLLYAQLSAATIKLASSK
Ga0211539_1014538923300020437MarineMKIEKKAVIRRRIRNIKADIQACRNSGNTLRMRVLYAQLTAATIKLHNMTH
Ga0211576_1001106773300020438MarineMKIESKAIIRRRIGNIERDIKNVRNSGDTFRMIILYRQLTANLIKLENMKN
Ga0211638_1048497123300020448MarineMKIESKAVIQRRIRNIEQDIQSVRNSGNTLRMRVLYAQLTASIIKLQNMKN
Ga0211543_1007661123300020470MarineMKIESKAIIRRRIQQLEADIKSVRNSGNTYRMRILYAQLSAATIKLVNMKN
Ga0211614_1006215843300020471MarineMKIESKAIIRRRIANIERDIKSVRNSGNTFRMIILYRQLTANMIKLQNMKN
Ga0213858_1036146323300021356SeawaterMKIETKAVIRRRIRNIQADIKAVRNSGNTYRMRILYAQLTAATIKLHNMTH
Ga0224906_100422553300022074SeawaterMKIESKAILRRRIRNIERDIKSVRNSGNTLRMRILYAQLSATTIKLASSK
Ga0196905_101942943300022198AqueousMKIETKATISRRIRNLEADIKSCRNSGNTLRMKILYSQLAQAQCKLVAMKN
(restricted) Ga0233433_1006146113300022931SeawaterMQIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSS
(restricted) Ga0233433_1020377933300022931SeawaterMKIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQ
(restricted) Ga0233433_1035541423300022931SeawaterMKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLTASMIKLQNMKN
(restricted) Ga0233433_1041978223300022931SeawaterIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSSLIKLENMKN
Ga0255782_1017010933300023105Salt MarshIESKAIISRRIRNLERDIKSCRNSGNTLRLKVLYAQLSQARIKLVAMKN
(restricted) Ga0233439_1002945813300024261SeawaterMKIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSSLIKLENMKN
(restricted) Ga0233439_1010417423300024261SeawaterMQIESKAIISRRIRNIRADIKSVRNSGNTMRMIILYHQLTSSLIKLENMKN
(restricted) Ga0233434_128457813300024327SeawaterMKIESKAIIRRRIGNIRADIKSVRNSGNTFRMRILYRQLT
Ga0208668_103486223300025078MarineMKIESKAIISRRIRNIQQDIKSVRNSGPTFRMIILYRQLTASKVKLQNMKN
Ga0208157_107317623300025086MarineMKIESKAIIRRRIANIERDIQNVRNSGNTFRMIILYRQLTASMIKLQNMKN
Ga0208157_111020423300025086MarineMKIESKSILRRRIRNIEADIKACRNSGNTLRMRLLYAQLSATTIKLASTK
Ga0208011_101094563300025096MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN
Ga0208011_104200923300025096MarineMKIESKAIIRRRIANIERDIKNVRNSGNTFRMIILYRQLTASMIKLQNMKN
Ga0208666_106557533300025102MarineMKIESKAIIRRRIGNIRADIKSVRNSGNTFRMIILYRQLTANLIKLENMKN
Ga0208666_112186023300025102MarineMKIESKSILRRRIRNIEADIKSCRNSGNTLRMRLLYAQLSATTIKLASTK
Ga0208158_116436313300025110MarineMKIESKAIIQRRIRNIEQDIKSVRNSGNTFRMIILYRQLTASMIKLQNMKN
Ga0209348_100972333300025127MarineMKIEPKAVIRRRIRNIEADIKAVRNSGNTYRMKILYAQLTAATIKLHNMTH
Ga0208919_110701213300025128MarineMKIESKAIISRRIRNIQQDIKSVRNSGNTFRMIILYRQLAHARVKLVATKN
Ga0209232_1001207243300025132MarineMKIESKAIIQRRIRNIEADIKSVRNNGNTLRMRLLYAQLSAATIKLASS
Ga0209232_102998253300025132MarineMKIESKAIIQRRIANIERDIKSVRNSGNTLRMRLLYAQLSAATIKLASTKN
Ga0209232_103342843300025132MarineMKIESKAILQRRIRTIKADIQSCRNSGNTLRIRLLYAQLSATTIKLASTK
Ga0209232_103499543300025132MarineMKIESKAIIQRRIANIERDIQNVRNSGNTFRMIILYRQLTASMIKLQNMKN
Ga0208162_100621393300025674AqueousMKIESKAIISRRIRNLERDIESCRNSGNTYRMRILYAQLSQARIKLVAMKH
Ga0208162_104978523300025674AqueousMKIESKAVIRRRIQQLEADIKAVRNSGNTYRMRILYAQLSAATIKLVNMKH
Ga0208162_118966813300025674AqueousMRIEPKAIIRQRIRNIKADIKSCRNSGNTLRMRILYAQLTSAIIKLNNMTH
Ga0208407_118280523300026257MarineMKIESKAIIRRRIGNIRADIKSVRNSGDTFRMRILYRQLTASLIKLENMKN
Ga0208411_119791113300026279MarineMKIESKAIIRRRIGNIKADIKSVRNSGNTFRMIILYHQLTASLIKLENMKN
Ga0209404_1050781513300027906MarineMKIESKAIIRRRIANIERDIQNVRNSGNTFRMIILYRQLTASMI
Ga0183748_101099743300029319MarineMKIESKAIISRRIRNIKADIKACRNSGNTLRMRMLYAQLSAATIKLASTK
Ga0183748_101245953300029319MarineMKIENRATIRRRIGQLEQDIKSVRNSGNTLRMRLLYAQLSAATIKLASTKN
Ga0183748_103612423300029319MarineMKIESKAIIQRRIRNIERDIKSVRNSGNTYRMRVLYAQLTQAQIKLVAMKN
Ga0315331_1006792253300031774SeawaterMKIESKAIVSRRIRNLRADIKSVRNSGNTVRMIILYRQLTASLIKLENMKN


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