NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F082653

Metagenome / Metatranscriptome Family F082653

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F082653
Family Type Metagenome / Metatranscriptome
Number of Sequences 113
Average Sequence Length 48 residues
Representative Sequence MYDSTTVTIGLDVHARSIRLAAVRADELLEERTLPYDEEAVERVL
Number of Associated Samples 101
Number of Associated Scaffolds 113

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 92.04 %
% of genes near scaffold ends (potentially truncated) 76.11 %
% of genes from short scaffolds (< 2000 bps) 92.04 %
Associated GOLD sequencing projects 96
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (85.841 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(16.814 % of family members)
Environment Ontology (ENVO) Unclassified
(27.434 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.558 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.68%    β-sheet: 0.00%    Coil/Unstructured: 49.32%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 113 Family Scaffolds
PF02371Transposase_20 7.96
PF01548DEDD_Tnp_IS110 5.31
PF13668Ferritin_2 1.77
PF08734GYD 1.77
PF00294PfkB 0.88
PF01642MM_CoA_mutase 0.88
PF14492EFG_III 0.88
PF04055Radical_SAM 0.88
PF08327AHSA1 0.88
PF00211Guanylate_cyc 0.88
PF11799IMS_C 0.88
PF14279HNH_5 0.88
PF01336tRNA_anti-codon 0.88
PF01551Peptidase_M23 0.88
PF00296Bac_luciferase 0.88
PF13413HTH_25 0.88
PF03704BTAD 0.88
PF13683rve_3 0.88
PF01245Ribosomal_L19 0.88
PF00753Lactamase_B 0.88
PF02518HATPase_c 0.88
PF13340DUF4096 0.88
PF05157T2SSE_N 0.88
PF04185Phosphoesterase 0.88
PF01527HTH_Tnp_1 0.88
PF06772LtrA 0.88
PF01968Hydantoinase_A 0.88
PF07040DUF1326 0.88
PF01458SUFBD 0.88

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 113 Family Scaffolds
COG3547TransposaseMobilome: prophages, transposons [X] 13.27
COG4274Uncharacterized conserved protein, contains GYD domainFunction unknown [S] 1.77
COG0335Ribosomal protein L19Translation, ribosomal structure and biogenesis [J] 0.88
COG0719Fe-S cluster assembly scaffold protein SufBPosttranslational modification, protein turnover, chaperones [O] 0.88
COG1884Methylmalonyl-CoA mutase, N-terminal domain/subunitLipid transport and metabolism [I] 0.88
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.88
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.88
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.88
COG3629DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domainTranscription [K] 0.88
COG3947Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domainsTranscription [K] 0.88
COG4292Low temperature requirement protein LtrA (function unknown)Function unknown [S] 0.88
COG5588Uncharacterized conserved protein, DUF1326 domainFunction unknown [S] 0.88

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms85.84 %
UnclassifiedrootN/A14.16 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2035918004|FACENC_F56XM5W01AI2TWAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium537Open in IMG/M
2070309009|GPKNP_F5JHDJD02JGBTINot Available520Open in IMG/M
2070309009|GPKNP_GG3DY5402JBBURAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium520Open in IMG/M
2170459010|GIO7OMY02HA6TXNot Available534Open in IMG/M
2170459010|GIO7OMY02HMSDLAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium519Open in IMG/M
2170459019|G14TP7Y01D9A8IAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium609Open in IMG/M
2199352033|2207089163All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium516Open in IMG/M
3300000956|JGI10216J12902_120491104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium561Open in IMG/M
3300003373|JGI25407J50210_10008918All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2533Open in IMG/M
3300003996|Ga0055467_10114367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium779Open in IMG/M
3300004081|Ga0063454_102055813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium506Open in IMG/M
3300004114|Ga0062593_103475272All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium506Open in IMG/M
3300004157|Ga0062590_100857897All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300005167|Ga0066672_10946790All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium530Open in IMG/M
3300005172|Ga0066683_10470626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium769Open in IMG/M
3300005175|Ga0066673_10417168All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300005175|Ga0066673_10728092All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300005176|Ga0066679_11021625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
3300005451|Ga0066681_10982370All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria504Open in IMG/M
3300005468|Ga0070707_100299037Not Available1564Open in IMG/M
3300005534|Ga0070735_10636470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium632Open in IMG/M
3300005536|Ga0070697_102116598All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300005540|Ga0066697_10116522All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1565Open in IMG/M
3300005569|Ga0066705_10226067All Organisms → cellular organisms → Bacteria → Terrabacteria group1181Open in IMG/M
3300005764|Ga0066903_101103771All Organisms → cellular organisms → Bacteria1463Open in IMG/M
3300005764|Ga0066903_101823266All Organisms → cellular organisms → Bacteria1163Open in IMG/M
3300005937|Ga0081455_10524984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales789Open in IMG/M
3300006032|Ga0066696_10744003All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300006578|Ga0074059_12115955All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium500Open in IMG/M
3300006800|Ga0066660_11010464All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium667Open in IMG/M
3300006806|Ga0079220_10973798All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium669Open in IMG/M
3300006854|Ga0075425_100235413All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales2107Open in IMG/M
3300006871|Ga0075434_100728516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1009Open in IMG/M
3300007076|Ga0075435_100040544All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA1173719Open in IMG/M
3300009012|Ga0066710_104809655Not Available505Open in IMG/M
3300009038|Ga0099829_11262530All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium611Open in IMG/M
3300009088|Ga0099830_11356012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia591Open in IMG/M
3300009089|Ga0099828_10932077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium775Open in IMG/M
3300009430|Ga0114938_1332506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium552Open in IMG/M
3300009551|Ga0105238_12693432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium534Open in IMG/M
3300009553|Ga0105249_11227624Not Available821Open in IMG/M
3300009807|Ga0105061_1041813Not Available678Open in IMG/M
3300009815|Ga0105070_1062561All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium701Open in IMG/M
3300009820|Ga0105085_1016536Not Available1273Open in IMG/M
3300010036|Ga0126305_11129209All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium540Open in IMG/M
3300010039|Ga0126309_10704367All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300010040|Ga0126308_10259644Not Available1132Open in IMG/M
3300010047|Ga0126382_12080267All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300010304|Ga0134088_10537839All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300010323|Ga0134086_10187783All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria768Open in IMG/M
3300010359|Ga0126376_12856181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium533Open in IMG/M
3300010360|Ga0126372_13314594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium501Open in IMG/M
3300012008|Ga0120174_1022810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1962Open in IMG/M
3300012093|Ga0136632_10119275All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1218Open in IMG/M
3300012189|Ga0137388_11130681All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium720Open in IMG/M
3300012201|Ga0137365_11196291All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium544Open in IMG/M
3300012206|Ga0137380_10784288All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium823Open in IMG/M
3300012206|Ga0137380_11290875All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium615Open in IMG/M
3300012211|Ga0137377_10333341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1453Open in IMG/M
3300012211|Ga0137377_11131693All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium713Open in IMG/M
3300012350|Ga0137372_10011486All Organisms → cellular organisms → Bacteria8489Open in IMG/M
3300012353|Ga0137367_10418035Not Available950Open in IMG/M
3300012353|Ga0137367_11075218All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium545Open in IMG/M
3300012356|Ga0137371_10223839All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1471Open in IMG/M
3300012356|Ga0137371_10310765All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1227Open in IMG/M
3300012356|Ga0137371_11363181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium522Open in IMG/M
3300012532|Ga0137373_10919530All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia640Open in IMG/M
3300012683|Ga0137398_10547548All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium798Open in IMG/M
3300012684|Ga0136614_10157707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1718Open in IMG/M
3300012684|Ga0136614_10543716All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium833Open in IMG/M
3300012951|Ga0164300_10964889All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300012955|Ga0164298_11412124All Organisms → cellular organisms → Bacteria → Terrabacteria group539Open in IMG/M
3300012964|Ga0153916_11214785All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300012975|Ga0134110_10361824All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium637Open in IMG/M
3300014031|Ga0120173_1047989All Organisms → cellular organisms → Bacteria → Terrabacteria group616Open in IMG/M
3300014302|Ga0075310_1089349Not Available642Open in IMG/M
3300014881|Ga0180094_1104833All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium654Open in IMG/M
3300015357|Ga0134072_10116526All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium841Open in IMG/M
3300015358|Ga0134089_10130065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium983Open in IMG/M
3300015359|Ga0134085_10284823All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium724Open in IMG/M
3300015372|Ga0132256_103139044Not Available556Open in IMG/M
3300017657|Ga0134074_1319244Not Available568Open in IMG/M
3300017695|Ga0180121_10384155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium543Open in IMG/M
3300017787|Ga0183260_10687176All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium649Open in IMG/M
3300017997|Ga0184610_1155303All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium752Open in IMG/M
3300018027|Ga0184605_10531569All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium509Open in IMG/M
3300018029|Ga0187787_10207112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria696Open in IMG/M
3300018061|Ga0184619_10348077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium676Open in IMG/M
3300018431|Ga0066655_11299514All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300018433|Ga0066667_10999312All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium722Open in IMG/M
3300018433|Ga0066667_11621049All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria577Open in IMG/M
3300019487|Ga0187893_10735014All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium606Open in IMG/M
3300022213|Ga0224500_10382043All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium509Open in IMG/M
3300025289|Ga0209002_10359379All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria840Open in IMG/M
3300025313|Ga0209431_10121932All Organisms → cellular organisms → Bacteria → Terrabacteria group2058Open in IMG/M
3300025552|Ga0210142_1013753All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1485Open in IMG/M
3300025567|Ga0210076_1083953Not Available696Open in IMG/M
3300025922|Ga0207646_10139416Not Available2183Open in IMG/M
3300025930|Ga0207701_11154007Not Available640Open in IMG/M
3300026295|Ga0209234_1198830All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium683Open in IMG/M
3300026343|Ga0209159_1136878All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300026550|Ga0209474_10063173All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2598Open in IMG/M
(restricted) 3300027799|Ga0233416_10003360All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium5064Open in IMG/M
3300027846|Ga0209180_10567506All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium630Open in IMG/M
3300027875|Ga0209283_10514620All Organisms → cellular organisms → Bacteria769Open in IMG/M
3300027915|Ga0209069_10505146All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium681Open in IMG/M
3300030619|Ga0268386_10814865Not Available595Open in IMG/M
3300031235|Ga0265330_10012002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4054Open in IMG/M
3300031247|Ga0265340_10202965All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium891Open in IMG/M
3300031249|Ga0265339_10315810All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium742Open in IMG/M
3300032256|Ga0315271_10268656All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1392Open in IMG/M
3300032256|Ga0315271_10561528All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria973Open in IMG/M
3300032828|Ga0335080_10657751All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1096Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.81%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil11.50%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.19%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand4.42%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.42%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.65%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.65%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil2.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.65%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.65%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.65%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.77%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.77%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil1.77%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.77%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.89%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater0.89%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.89%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.89%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.89%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.89%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.89%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.89%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.89%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.89%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.89%
Speleothem And Rock Wall SurfacesEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces0.89%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.89%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.89%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.89%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.89%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2035918004Soil microbial communities from sample at FACE Site 2 North Carolina CO2-EnvironmentalOpen in IMG/M
2070309009Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
2170459019Litter degradation MG4EngineeredOpen in IMG/M
2199352033Cave microbial community (Wet rock wall)EnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003373Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300003996Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2EnvironmentalOpen in IMG/M
3300004081Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006578Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009430Groundwater microbial communities from Big Spring, Nevada to study Microbial Dark Matter (Phase II) - Ash Meadows Big SpringEnvironmentalOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009820Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60EnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010039Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300012008Permafrost microbial communities from Nunavut, Canada - A39_80cm_12MEnvironmentalOpen in IMG/M
3300012093Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012684Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300014031Permafrost microbial communities from Nunavut, Canada - A35_80cm_0.25MEnvironmentalOpen in IMG/M
3300014302Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2EnvironmentalOpen in IMG/M
3300014881Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1DaEnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017695Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)EnvironmentalOpen in IMG/M
3300017787Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)EnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300022213Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1EnvironmentalOpen in IMG/M
3300025289Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 2EnvironmentalOpen in IMG/M
3300025313Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)EnvironmentalOpen in IMG/M
3300025552Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025567Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300030619Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)EnvironmentalOpen in IMG/M
3300031235Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaGHost-AssociatedOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031249Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaGHost-AssociatedOpen in IMG/M
3300032256Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_topEnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
FACENCA_50760302035918004SoilMFESTTVSVGLDVHARSIRLAAVRAEELLDERTLPYDEEAV
GPKNP_021097002070309009SoilMYDSTTVAVGLDVHARSIRLAAVRADELLEERSLPYDEEAVERALHCW
GPKNP_018537302070309009SoilMFESMTVTVGLDVHANLVRLAAVRADELLEERTLPYDHDAVERVLRG
F62_005930202170459010Grass SoilMFESMTVSVGLDVHARSVRLAALRVDELLGGADVAV
F62_075398602170459010Grass SoilMVEFMTVAVGVDVHARSIRVAAVCAEELLEERTLPYDEEAVVRLLRRWPGVRCCYEAGPT
4MG_003091002170459019Switchgrass, Maize And Mischanthus LitterMVESTTVTVGLDVHARSIRLAAVRADELLEERTLPCDEQAVERLLRRW
22088976012199352033Speleothem And Rock Wall SurfacesMYDSTTTVTVGLDVHARSIRLAVVRADELLEERTLAYDEEAVERV
JGI10216J12902_12049110423300000956SoilMYESTAVAVGLDVHARSIRLAAVRADELLEERTLPYD
JGI25407J50210_1000891813300003373Tabebuia Heterophylla RhizosphereMHDCRAGTVSVGLDVHAASIRLAAVRADELLEECTLPYDHEAVERRL
Ga0055467_1011436713300003996Natural And Restored WetlandsMVESTTVSVGLDVHARSIRLAAVCADELLVERTLPYDEQAVERLLRRWPRVRCLL*
Ga0063454_10205581323300004081SoilMHESTTVTVGLDVHARSIRLAAVRADELLEERTLPNEEAV
Ga0062593_10347527213300004114SoilMIESMTVTVGLDVHARSIRLAAVRADELVEERTLPYDEDAVARLLGRWPAVRCCYEAG
Ga0062590_10085789713300004157SoilMSESRTVTVSLDVHARSIRFAAVRGEELLEDRTPPCDYEALERALGCWP*
Ga0066672_1094679023300005167SoilMYDSTTTVTVGLDVHARSIRVAAVRADELLAERTLPYDEEAVERVLRRWPVVRCCYE
Ga0066683_1047062623300005172SoilMCDSTTTVAVGLDVHAGSIRLATVRADELLEERTLAYDGEAVERALRRWPGARCCYRLRPFREGGGVDGL
Ga0066673_1041716813300005175SoilMCDSTTTVAVGLDVHARSIRLAAVRADELLEERTLPYDEEAVE
Ga0066673_1072809213300005175SoilMYDSRTTVTVGLDVHARSMRLAAVRADELLEERTLPYDEEAVER
Ga0066679_1102162513300005176SoilMSESTAVTVGLDVHARSIRLAAVRADELLEERSLPYDEDAVERLLRRWPAVRCCYEA
Ga0066681_1098237013300005451SoilMYDCTTVTIGLDVHARSVRLAAVRADQLLEERTLPYDEEAVE
Ga0070707_10029903733300005468Corn, Switchgrass And Miscanthus RhizosphereMYDSTTVSVGLDVHAGSVLLAAVRADELLEERLLAYDLEAVARCLGRWPGVRCCYEAGPPSTGSPARRRR*
Ga0070735_1063647013300005534Surface SoilMSESMTVTVGLDVHARSIRLAAVCADELVEERTLPYDEDVVE
Ga0070697_10211659813300005536Corn, Switchgrass And Miscanthus RhizosphereMYDSTTTVAVGLDVHARSIRLAAVRADELLEERTLPYDEEAVE
Ga0066697_1011652213300005540SoilMYDSTTTVAVGLDVHARSIRVAAVRADELLEERTLR*
Ga0066705_1022606723300005569SoilMYDSTTTVTVGLDVHDRSIRLAVVRADELLEERTPAYDEDAVERVLRRWPSTAARASGRRQG*
Ga0066903_10110377133300005764Tropical Forest SoilMVESTTVTVGLDVHARSIRLAAVRADELLAERTLPYDEEAVERLLQRWPGVRCCYEA
Ga0066903_10182326613300005764Tropical Forest SoilMFESTMVSVGLDVHACSVRFAAVRAEELLEERTLPYDQEAVARV
Ga0081455_1052498433300005937Tabebuia Heterophylla RhizosphereMPHTTPVTVGLDVHARSVRLAALRDDELLEECTLPYDHTAIERSIGRWPGARACYE
Ga0066696_1074400323300006032SoilMYDSTTVTIGLDVHARSIRLAAVRADQLLEERTLPYDEEAVERVLRRWPGVRCCYE
Ga0074059_1211595513300006578SoilMIESMTVTVGLDVHARSIRLAAVRADELLEERTLPYDEEAVARLL
Ga0066660_1101046423300006800SoilMYDSTTTVTVGLDVHARSIRLAVVRADELLEERTLAYDEEAVERVLRRWPSTAARASGRRQG*
Ga0079220_1097379813300006806Agricultural SoilMVESTTVTVGVAVHARSIRLAAVRGDELLEERSLPFDEEAVERLLRRWPAVRCC*
Ga0075425_10023541323300006854Populus RhizosphereMSESTTVSVGLDVHARSIRLAAVCADELLEERTLAYDEEAVERLLRRWPAVRCC*
Ga0075434_10072851633300006871Populus RhizosphereMSESTTVTVGLDVHARSIRLAAVCADELLEERTLAYDEEAVERLLRRWPAVRCCYEA
Ga0075435_10004054423300007076Populus RhizosphereMSESRTVAIGLDVHAASVRLAVVRGNELLDERTLPYDHEAVERAVRRW
Ga0066710_10480965513300009012Grasslands SoilMTDPRAVAVGLDVHKSSVRLAAVRAGEVLAERTLAHEHEAVIAALASWPGAR
Ga0099829_1126253013300009038Vadose Zone SoilMYDSTTTVTVGLDVHARSVRLAAVRADELLEERALPYDEEAVERVL
Ga0099830_1135601213300009088Vadose Zone SoilMFESTTVTVGLDVHASSIRLAAVRGDELLDERTLGYDLEAVERFLRRWPAVCCCYEAGP
Ga0099828_1093207713300009089Vadose Zone SoilMFESTTVSVGLDVHARSIRLAAVRADELLEERTLPYDEEAVERVLRRWPAVRCC
Ga0114938_133250613300009430GroundwaterMHEDTTVTVGLDVHARSIRLAAISADELLDERTLPY
Ga0105238_1269343213300009551Corn RhizosphereMYDSTTTVAVGLDVHAGSIRLAAVRADELLEERTLAYDEEAVEWALRRWPGA
Ga0105249_1122762413300009553Switchgrass RhizosphereMFVSTGVIVGLDVDARSIRLAALRAEELLEERTLPYDEEAVE
Ga0105061_104181313300009807Groundwater SandMTVAVGLDVHARSIRFAALRADELLEERTLPYDEAAVERALRRW
Ga0105070_106256113300009815Groundwater SandMFESTTVSVGLDVHARSVRLAAVRADELLEERTLAYDEE
Ga0105085_101653613300009820Groundwater SandMNESRTVTVGLDVHASSIWLAAVRRDELLDERTLPYEQAAVER
Ga0126305_1112920923300010036Serpentine SoilMLESRTVTVGLDVHARSIRLAAVRADELLEERTLPYDEEQVERL
Ga0126309_1070436723300010039Serpentine SoilMSESRTVTVGLDVHASPIRLAAVRGEELLEERTLPYDYEAL
Ga0126308_1025964423300010040Serpentine SoilMFESTTVAVGLDVHARSVRLAAVRADELLEERTLPYDEEAVERALRR
Ga0126382_1208026713300010047Tropical Forest SoilVGLDVHARSIRLAAVRADELLEERSLPYDEQAVERLLRRWPGARCCYE
Ga0134088_1053783913300010304Grasslands SoilMDESRTVTVGLDVHAGSIRLAAVRGVELLEERTLPYDHEA
Ga0134086_1018778323300010323Grasslands SoilMYDSTTAVTVGLDVHARSIRLAAVRADELLEERTLVYDEEAVARALRRWPVVLLLRG
Ga0126376_1285618113300010359Tropical Forest SoilMFESTMVSVGLDVHACSVRFAAVRAEELLEERTLPYDQEAVARVLRRWP
Ga0126372_1331459413300010360Tropical Forest SoilMNESRTVTVGLDVHARSVRLAAVRADELLEERTLPYDEAAVERALRRW
Ga0120174_102281013300012008PermafrostMTAVAVGLDVHARSVRLAVVRAGELLEERTLPYDEEALERVLRRWPVVRCCYAAG
Ga0136632_1011927523300012093Polar Desert SandMDDSTMTVAVGLDVHARSIRLAAVRADGLLEERTLPYDERVVERALRR*
Ga0137388_1113068123300012189Vadose Zone SoilMDESTTVTVGLDVHARSIRVAAVRADELLEERTLP
Ga0137365_1119629113300012201Vadose Zone SoilMTTVTVGLDVHARSVRLAAVCADELLEERTLAYDEEAVERVLRRWPVVRCC*
Ga0137380_1078428823300012206Vadose Zone SoilTVTVGLDVHARSIRLAAVRADELLEERTLPYDEDTVERVLRRWPGVRCC*
Ga0137380_1129087513300012206Vadose Zone SoilMFESTTVTVGLDVHARSIRLAAVRADELLEERTLPYDEEAVERLLRRWPSVRLLL*
Ga0137377_1033334123300012211Vadose Zone SoilMSESTTVTVGLDVHARSIRLAAVRADELLEERTLPYDEDTVERVLRRWPGVRCC*
Ga0137377_1113169313300012211Vadose Zone SoilMYDSTTTVTVGLDVHVRSVRLAAVRADELLEERTLPYDEGAVERVLRRWPTVRCC*
Ga0137372_1001148633300012350Vadose Zone SoilMVESTTVAVGLDLHARSIRLAVLRADELLEEPTLP*
Ga0137367_1041803513300012353Vadose Zone SoilMFESTTVPVGLDARSVRLAAVRGDELLEERTLAYDEEA
Ga0137367_1107521813300012353Vadose Zone SoilMYDSTTVTIGLDVHARSIRLAAVRADELLEERTLPYDEEAVERVL
Ga0137371_1022383923300012356Vadose Zone SoilMKESAAVTVGLDVHASSIRLAAVRSDELLDERTLA*
Ga0137371_1031076513300012356Vadose Zone SoilMREPTPVPVGLDVHARSIRLAAVRADELLEERTLPYDEGAVERVLRRWPTVRCC*
Ga0137371_1136318113300012356Vadose Zone SoilLDVHARSIRLAAVRADELLEERTIPYDEGAVERMLRRWPAVRCCYEAGP
Ga0137373_1091953013300012532Vadose Zone SoilMYDSTTVTIGLDVHARSIRLAAVRADELLEERTLPYDEE
Ga0137398_1054754813300012683Vadose Zone SoilMYDSTTTVTVGLDVHARSIRLAAVRADELLEERTLAYDEDAVERV
Ga0136614_1015770733300012684Polar Desert SandMNDFTSSTVSVGLDVHASSIRVAVVRADELLVERTLPYDHGAVERELKRW
Ga0136614_1054371633300012684Polar Desert SandLDVHATSIRLAAVRADELLDERTLPYDHEAIERAISRWPGAQACYEAGPTGYGFSAI*
Ga0164300_1096488913300012951SoilMIESTTVTVGLDVHARSIRLAAVRAEELLEERTLPYDEEGVVRLLRQWPTVR
Ga0164298_1141212423300012955SoilMRESRTVTVGLDVHARSIRLAAVRSDELLEERTLPYDEDAVARLLGRWPAVRCC*
Ga0153916_1121478513300012964Freshwater WetlandsMYDSTTTVTVGLDVHARSVRLAAVRADELLEERTLPYDEEAVE
Ga0134110_1036182423300012975Grasslands SoilMSESTTVTIGLDVHASSIRFAAIRADELLEERTLAY
Ga0120173_104798923300014031PermafrostMYDSTTTVAVGLDVHARSIRLAAVRADELLEERTRPHGQ
Ga0075310_108934913300014302Natural And Restored WetlandsMHEGTSATVYVGLDVHAASIRLAAVRADELLDERT
Ga0180094_110483313300014881SoilMSESRTVTVGLDVHARSIRLAAIRGDELLTERTLPYDEEAVERVLRGWPRVR
Ga0134072_1011652613300015357Grasslands SoilMSDFTGATVAVGLDVHAASIRLAAVRADELVDERTLPYDHEAVERAVRCWPGAR
Ga0134089_1013006533300015358Grasslands SoilMYDSTTTVAVGLDVHARSIRLAAVRADELLEERTLP
Ga0134085_1028482313300015359Grasslands SoilMCDSTTTVAVGLDVHAGSIRLATVRADELLEERTLAYDGEAVERALRRW
Ga0132256_10313904413300015372Arabidopsis RhizosphereMVESMPVTVGLDVDARSIRLAAVGADELLDERALPYDEVA
Ga0134074_131924413300017657Grasslands SoilMSESMTVAVGLDVHARSIRLAAVRADELLEERTLSYDEEAVERALRRWPAVRCCYEA
Ga0180121_1038415513300017695Polar Desert SandMNDFTSGTVSVGLDVHAASIRLAAVRADELLEERTLPYDHEAV
Ga0183260_1068717623300017787Polar Desert SandMNDFTSSTVSVGLDVHASSIRVAVVRADELLVERTLPYDHGAVERERW
Ga0184610_115530323300017997Groundwater SedimentMYDSTTTTVTVGLDVHARSVRLAAVRADELLEERTLPYDHAAVERALARWQGARVCYEAG
Ga0184605_1053156913300018027Groundwater SedimentMNESMTVTVGLDVHARSIRLAAVRVDELLEERTLP
Ga0187787_1020711213300018029Tropical PeatlandMSESTTVTVGLDVHARSIRLAAVRADELLEERTLPYDEEW
Ga0184619_1034807713300018061Groundwater SedimentMYDSTTTVTVGLDVHARSIRLAAIRGDQLLEERTLPYNEEAVEQVLRRWPAARCC
Ga0066655_1129951423300018431Grasslands SoilMYDSTTTVAVGLDVHARSIRLAAVRADELLEERTLPYDEEAVERVLRRWPGV
Ga0066667_1099931213300018433Grasslands SoilMYDSMTAVAVGLDVHARSIRVAAVRADELLEERTLPYNEEQVERLLRRWPSVRCCYEA
Ga0066667_1162104913300018433Grasslands SoilMYDSTTTVAVGLDVHARSIRLAAARADELLEERTLPYDEEAGERAG
Ga0187893_1073501413300019487Microbial Mat On RocksMDEDTTVTVGLDVHAHSIRLAAVRADELVDERTLPYDEA
Ga0224500_1038204313300022213SedimentLDVHARSIRLAAFRADEPVEERTPAYDEEAVERQLRRWPGMRC
Ga0209002_1035937913300025289SoilMNESTTVTVGLDVHARSIRLAAVRADELLEERTLPYDEEAVERVLRRWPVVRCCFSAS
Ga0209431_1012193253300025313SoilMHDPTTNTVSVGLDVHAASVRLAAVRADELLDEHTLPYDHAAVAGVIGRWPGARVCYEAG
Ga0210142_101375333300025552Natural And Restored WetlandsMVESTTVSVGLDVHARSIRLAAVCADELLVERTLPYDEQAVERLLRRWPRVRCLL
Ga0210076_108395313300025567Natural And Restored WetlandsMVESTTVSVGLDVHARSIRLAAVCADELLVERTLPYDEQAVERLLRRWPRVRWLL
Ga0207646_1013941623300025922Corn, Switchgrass And Miscanthus RhizosphereMYDSTTVSVGLDVHAGSVLLAAVRADELLEERLLAYDLEAVARCLGRWPGVRCCYEAGPPSTGSPARRRR
Ga0207701_1115400713300025930Corn, Switchgrass And Miscanthus RhizosphereMFESTAVIVGLDVHARSIRLAALRAEELLEERTLPYDEEAVERLLRRWPSVRCCYE
Ga0209234_119883033300026295Grasslands SoilVPSGTVEAFGLDVHARSIRLAAVRADELLEERTLPYDEEAVERALRRWPGVRCCYEAG
Ga0209159_113687813300026343SoilMVESTTVTVGLDVHARSIRLAAVRADELLEERTLAYDEQAVE
Ga0209474_1006317313300026550SoilMRESMTVAVGLDVHARSIRLAAVRADELLEERTLPYDEEAV
(restricted) Ga0233416_1000336033300027799SedimentMYDSTTVTVGLDVHARSIRLAAVRADELLEEQTLPYDEEAVEQVLRR
Ga0209180_1056750613300027846Vadose Zone SoilMYDSTTTVTVGLDVHARSVRLAAVRADELLEERALPYDEEAVERV
Ga0209283_1051462013300027875Vadose Zone SoilMYDSTTTVAVGLDVHAGSIRLAALRADELLEERTLSYDEEAV
Ga0209069_1050514623300027915WatershedsMYDSTTTVTVGLDVHARSIRLAAVRADELLEERTLPY
Ga0268386_1081486513300030619SoilMHDSTTETVSVGLDVHKSSIRLAAVRADELLDERTLPY
Ga0265330_1001200223300031235RhizosphereMYDSTTTVTVGLDLHTRSIRLAAVRADELLEKRTLPYDHEAVERVLRR
Ga0265340_1020296513300031247RhizosphereMVESMTVAVGLDVHARSIRVAVVRADELLEERTLPYDEEAVER
Ga0265339_1031581013300031249RhizosphereRSPTMYDSTTTVTVGLDLHTRSIRLAAVRADELLEKRTLPYDHEAVERVLRR
Ga0315271_1026865633300032256SedimentMPDFVTVSVGLDVHARSIRLAAVRADELLEECTLPYDEAAVERVLRRWP
Ga0315271_1056152813300032256SedimentMYDSMTTVAVGLDVHARSIRLAAVCADGLLEERTLPYDEEAVERALRRWPVVRCC
Ga0335080_1065775123300032828SoilVHARSIRLDAIRADDLLDERTLPYDQEAVALALRSW

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.