Metagenome / Metatranscriptome Family F082944

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082944
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	47 residues
Representative Sequence	EMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKHVVIE
Number of Associated Samples	85
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.39 %
% of genes near scaffold ends (potentially truncated)	83.19 %
% of genes from short scaffolds (< 2000 bps)	87.61 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.841 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.628 % of family members)
Environment Ontology (ENVO)	Unclassified (56.637 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.177 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.49% β-sheet: 0.00% Coil/Unstructured: 63.51%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00005	ABC_tran	70.80
PF12708	Pectate_lyase_3	1.77
PF02706	Wzz	0.88
PF13561	adh_short_C2	0.88
PF13847	Methyltransf_31	0.88
PF13360	PQQ_2	0.88
PF00534	Glycos_transf_1	0.88
PF13946	DUF4214	0.88
PF02350	Epimerase_2	0.88
PF13439	Glyco_transf_4	0.88
PF13469	Sulfotransfer_3	0.88
PF01075	Glyco_transf_9	0.88
PF13579	Glyco_trans_4_4	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0859	ADP-heptose:LPS heptosyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.84 %
Unclassified	root	N/A	14.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.84 %
Unclassified	root	N/A	14.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.84 %
Unclassified	root	N/A	14.16 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	82.30 %
Unclassified	root	N/A	14.16 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.32 %
Unclassified	root	N/A	14.16 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.16 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.54 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	2.65 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.88 %
Legionellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	2.65 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.88 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %
Legionellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Candidatus Yanofskybacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	2.65 %
Legionella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella	0.88 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.88 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.16 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.54 %
Candidatus Yanofskybacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	2.65 %
Legionella brunensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella brunensis	0.88 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.88 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.88 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003219\|JGI26341J46601_10020694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2154	Open in IMG/M
3300003368\|JGI26340J50214_10050157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1159	Open in IMG/M
3300004082\|Ga0062384_100000990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7976	Open in IMG/M
3300004091\|Ga0062387_100059535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1877	Open in IMG/M
3300005187\|Ga0066675_10215514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1356	Open in IMG/M
3300005332\|Ga0066388_106616173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300005764\|Ga0066903_108605939	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300006176\|Ga0070765_102118408	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300006800\|Ga0066660_11432499	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300006804\|Ga0079221_11270553	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300009012\|Ga0066710_100882408	All Organisms → cellular organisms → Bacteria → Proteobacteria	1375	Open in IMG/M
3300010043\|Ga0126380_11586861	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300010046\|Ga0126384_12391748	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300010048\|Ga0126373_10361903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1466	Open in IMG/M
3300010048\|Ga0126373_11527609	All Organisms → cellular organisms → Bacteria → Proteobacteria	733	Open in IMG/M
3300010048\|Ga0126373_12601849	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300010339\|Ga0074046_10017272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5142	Open in IMG/M
3300010341\|Ga0074045_10003160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14894	Open in IMG/M
3300010359\|Ga0126376_10144147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1898	Open in IMG/M
3300010361\|Ga0126378_11261106	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300010361\|Ga0126378_12410297	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300010366\|Ga0126379_12703914	Not Available	593	Open in IMG/M
3300010376\|Ga0126381_101461409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	988	Open in IMG/M
3300010376\|Ga0126381_101707653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	909	Open in IMG/M
3300010376\|Ga0126381_102433266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	751	Open in IMG/M
3300010398\|Ga0126383_10841779	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300010398\|Ga0126383_12190120	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300011120\|Ga0150983_14129008	All Organisms → cellular organisms → Bacteria → Proteobacteria	1321	Open in IMG/M
3300012203\|Ga0137399_10465276	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300012922\|Ga0137394_10264616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300012971\|Ga0126369_10875295	All Organisms → cellular organisms → Bacteria → Proteobacteria	983	Open in IMG/M
3300015245\|Ga0137409_11032800	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300016294\|Ga0182041_11456742	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300016294\|Ga0182041_11604671	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300016319\|Ga0182033_10005348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6849	Open in IMG/M
3300016319\|Ga0182033_10053153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2759	Open in IMG/M
3300016319\|Ga0182033_10302087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1321	Open in IMG/M
3300016341\|Ga0182035_11139326	Not Available	695	Open in IMG/M
3300016341\|Ga0182035_11522182	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300016357\|Ga0182032_10012527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4656	Open in IMG/M
3300016371\|Ga0182034_10652889	All Organisms → cellular organisms → Bacteria → Proteobacteria	891	Open in IMG/M
3300016387\|Ga0182040_10156659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1630	Open in IMG/M
3300016387\|Ga0182040_10201974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1462	Open in IMG/M
3300016387\|Ga0182040_10484399	All Organisms → cellular organisms → Bacteria → Proteobacteria	986	Open in IMG/M
3300016404\|Ga0182037_10272548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1348	Open in IMG/M
3300016404\|Ga0182037_10909055	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	764	Open in IMG/M
3300016404\|Ga0182037_11281571	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300016422\|Ga0182039_10866337	All Organisms → cellular organisms → Bacteria → Proteobacteria	805	Open in IMG/M
3300016445\|Ga0182038_11131620	Not Available	696	Open in IMG/M
3300017995\|Ga0187816_10006215	All Organisms → cellular organisms → Bacteria → Proteobacteria	4209	Open in IMG/M
3300021444\|Ga0213878_10136846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1012	Open in IMG/M
3300021474\|Ga0210390_11005514	All Organisms → cellular organisms → Bacteria → Proteobacteria	681	Open in IMG/M
3300021476\|Ga0187846_10181057	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300021478\|Ga0210402_11139365	All Organisms → cellular organisms → Bacteria → Proteobacteria	707	Open in IMG/M
3300021560\|Ga0126371_10117383	All Organisms → cellular organisms → Bacteria → Proteobacteria	2678	Open in IMG/M
3300021560\|Ga0126371_12247741	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300021560\|Ga0126371_12631597	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300021560\|Ga0126371_12793392	Not Available	592	Open in IMG/M
3300026317\|Ga0209154_1274062	All Organisms → cellular organisms → Bacteria → Proteobacteria	566	Open in IMG/M
3300027376\|Ga0209004_1066656	All Organisms → cellular organisms → Bacteria → Proteobacteria	608	Open in IMG/M
3300027701\|Ga0209447_10104814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300027783\|Ga0209448_10021441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2131	Open in IMG/M
3300027812\|Ga0209656_10040807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2685	Open in IMG/M
3300031057\|Ga0170834_110666392	Not Available	664	Open in IMG/M
3300031058\|Ga0308189_10236929	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300031543\|Ga0318516_10477839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300031545\|Ga0318541_10299925	All Organisms → cellular organisms → Bacteria → Proteobacteria	895	Open in IMG/M
3300031545\|Ga0318541_10471224	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300031549\|Ga0318571_10417237	Not Available	527	Open in IMG/M
3300031573\|Ga0310915_10455897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	909	Open in IMG/M
3300031713\|Ga0318496_10465990	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300031724\|Ga0318500_10390587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300031744\|Ga0306918_10129731	All Organisms → cellular organisms → Bacteria → Proteobacteria	1838	Open in IMG/M
3300031744\|Ga0306918_10773668	Not Available	750	Open in IMG/M
3300031751\|Ga0318494_10534330	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300031770\|Ga0318521_10212387	All Organisms → cellular organisms → Bacteria → Proteobacteria	1121	Open in IMG/M
3300031771\|Ga0318546_11136208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300031778\|Ga0318498_10503122	Not Available	533	Open in IMG/M
3300031779\|Ga0318566_10618596	Not Available	527	Open in IMG/M
3300031781\|Ga0318547_10148725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → Legionellaceae → Legionella → Legionella brunensis	1376	Open in IMG/M
3300031781\|Ga0318547_10188097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1229	Open in IMG/M
3300031781\|Ga0318547_10507604	All Organisms → cellular organisms → Bacteria → Proteobacteria	745	Open in IMG/M
3300031798\|Ga0318523_10229537	Not Available	928	Open in IMG/M
3300031819\|Ga0318568_11014008	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300031821\|Ga0318567_10536113	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300031823\|Ga0307478_11804090	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300031846\|Ga0318512_10106058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1325	Open in IMG/M
3300031846\|Ga0318512_10646276	Not Available	541	Open in IMG/M
3300031860\|Ga0318495_10357003	All Organisms → cellular organisms → Bacteria → Proteobacteria	647	Open in IMG/M
3300031890\|Ga0306925_10214535	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300031896\|Ga0318551_10078363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1726	Open in IMG/M
3300031897\|Ga0318520_10668049	All Organisms → cellular organisms → Bacteria → Proteobacteria	648	Open in IMG/M
3300031897\|Ga0318520_10743266	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300031910\|Ga0306923_10257471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1996	Open in IMG/M
3300031910\|Ga0306923_11583825	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300031910\|Ga0306923_12571108	Not Available	500	Open in IMG/M
3300031941\|Ga0310912_10339462	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300031954\|Ga0306926_10091905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3709	Open in IMG/M
3300031954\|Ga0306926_11238842	Not Available	874	Open in IMG/M
3300032001\|Ga0306922_10882852	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300032035\|Ga0310911_10462665	Not Available	735	Open in IMG/M
3300032035\|Ga0310911_10644114	Not Available	614	Open in IMG/M
3300032035\|Ga0310911_10758177	Not Available	561	Open in IMG/M
3300032041\|Ga0318549_10548561	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300032042\|Ga0318545_10334779	All Organisms → cellular organisms → Bacteria → Proteobacteria	545	Open in IMG/M
3300032052\|Ga0318506_10422479	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300032054\|Ga0318570_10387621	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300032055\|Ga0318575_10258097	All Organisms → cellular organisms → Bacteria → Proteobacteria	880	Open in IMG/M
3300032059\|Ga0318533_11163525	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300032076\|Ga0306924_11194596	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300032094\|Ga0318540_10419551	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300032261\|Ga0306920_100087275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4600	Open in IMG/M
3300033289\|Ga0310914_10668196	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Yanofskybacteria	934	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.92%
Aquatic	Environmental → Aquatic	7.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.04%
Freshwater	Environmental → Aquatic → Freshwater	7.08%
Cave	Environmental → Terrestrial → Cave	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.08%
Loam	Environmental → Terrestrial → Soil → Loam	4.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.77%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.65%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26341J46601_100206943	3300003219	Bog Forest Soil	MIRVRVFAXPTYGDPADTTFFLAILTLFXLWLLREARKHVVIE*
JGI26340J50214_100501572	3300003368	Bog Forest Soil	MIRVRVFAAPTYGDPADTTFFLAILTLFSLWLLREARKHVVIE*
Ga0062384_1000009906	3300004082	Bog Forest Soil	MIRVWVFATPTYGDPADTTLFLAILTLFGSWLMREARKHVVIE*
Ga0062387_1000595353	3300004091	Bog Forest Soil	MIRVRVFAAPTYGDPADTTFFLAILTLFGLWLMREARKHVVIE*
Ga0066675_102155143	3300005187	Soil	GIFGTTIKTYGNPGYTTFALAILTLLGLWLLREGRKYVVLE*
Ga0066388_1066161731	3300005332	Tropical Forest Soil	YEMIRAGVFGTTITTHRDPAYTTFALAILTLFGLWLMRESRKYVVIE*
Ga0066903_1086059391	3300005764	Tropical Forest Soil	QAYEMIRGGVFGTTITTYTDPAYTTLALAILTLFGLWLMREGHKYVVIE*
Ga0070765_1021184081	3300006176	Soil	QAYEMIRAGIFGTTIKTYGNPGYTTFALAILTLVGLWLLREGRRYIVLE*
Ga0066660_114324991	3300006800	Soil	TIKTYGNPVYTTFALAILTLLGLWLLREGRKYVVLE*
Ga0079221_112705532	3300006804	Agricultural Soil	EMIRAGVFGSVIKTYGDPGYTAFILSILTLIGLWVMREGRKYVVVE*
Ga0066710_1008824083	3300009012	Grasslands Soil	YQPSVQGYEMIRAGVFGTMIRTYGDPAYTAFVLAVLTVFGLWLMRESRRYVVME
Ga0126380_115868612	3300010043	Tropical Forest Soil	SQAYEMIRGGVFGTTITTYTDPAYTTFALAILTLLGLWLMREGHKYVVIE*
Ga0126384_123917481	3300010046	Tropical Forest Soil	TITTYTDPAYTTFVLAILTLFGLWLMREGHKYVVIE*
Ga0126373_103619033	3300010048	Tropical Forest Soil	PPRLRAVALYQPYTQAYEMIRAGVFGTAVKTYGDPMYTACGLAVMRLFGLRLLREGGRYAMAE*
Ga0126373_115276092	3300010048	Tropical Forest Soil	PPRLRAVALYQPYTQAYEMIRAGVFGTAVKTYGDPMYTACVLAVMTLVGLWLLREGGRSVMAE*
Ga0126373_126018492	3300010048	Tropical Forest Soil	VFGSTITTYGDPGYTTFALATLTLFGLWLMRESRKYVVIE*
Ga0074046_100172723	3300010339	Bog Forest Soil	MIRVRVFATPTYGDPADTTFFLAILTLFSLWLLREARKHVVIE*
Ga0074045_100031603	3300010341	Bog Forest Soil	MIRVRVFATPTYGDPADTTFFLAILTLFGLWLLREARKHVVIE*
Ga0126376_101441473	3300010359	Tropical Forest Soil	PYTQAYEMIRGGVFGTTITTYTDPAYTTLALAILTLFGLWLMREGHKYVVIE*
Ga0126378_112611061	3300010361	Tropical Forest Soil	ITTYPDPAYTTFALAILTLFGLWLMREGHKYVVIE*
Ga0126378_124102972	3300010361	Tropical Forest Soil	MIRTGVFGTTVKPMETMYTACVLAVMTLVGLWLLREGGRSVMAE*
Ga0126379_127039142	3300010366	Tropical Forest Soil	RAGVFGGVIKTYGDPGYTAFTLAALTLFGLWLMREGRKYVVVE*
Ga0126381_1014614091	3300010376	Tropical Forest Soil	VFGTTVKTYGDPLYTTWVLAVLTLFGLWLLRTGRRYVVAE*
Ga0126381_1017076533	3300010376	Tropical Forest Soil	MIRGGVFGTTITTYGDPTYTTFALAVLTLFGLWLMRESRKYVVIE*
Ga0126381_1024332662	3300010376	Tropical Forest Soil	MIRTSVFGTTAKTYGDPMYTACGLAVMTLVGLWLLREGGRSVMAE*
Ga0126383_108417791	3300010398	Tropical Forest Soil	YVALCQPYTQAYEMVRAGVFGGAIRTYGDPGYTAFILAALTLFGLWLMREGRKYVVVE*
Ga0126383_121901202	3300010398	Tropical Forest Soil	VFGSVIKTYGDPAYTAFTLAILTLIGLWCLREGRKYVVIE*
Ga0150983_141290081	3300011120	Forest Soil	LYQPYTQAYEMIRGGVFGTTIKTYGDPEYTTLALASLTLFGLWLLRDSRRFVVIE*
Ga0137399_104652761	3300012203	Vadose Zone Soil	YEMIRGGVFGTTIKTYGDPEYTTLALASLTLFGLWLLRDSRRFVVIE*
Ga0137394_102646161	3300012922	Vadose Zone Soil	TQAYEMIRAGVFGTTIKTYGDPEYTTFALASLTLFGLWLLRDSRRFVVIE*
Ga0126369_108752951	3300012971	Tropical Forest Soil	MIRASVFGTTVKTYEDLMYTACGLAVMTLVGLWLLREGGRSVMAE*
Ga0137409_110328001	3300015245	Vadose Zone Soil	EMIRAGVFGTAVRTYGDPAYTAFVLACMTLLGLWLLRESRRYIVME*
Ga0182041_114567422	3300016294	Soil	LRAVALYQPYTQAYEMIRASVFGTAVKTYGDPMYTACVLAVMTLVCLWLLREGGRYVMAE
Ga0182041_116046712	3300016294	Soil	SYEMLRGGMFGSTITTYGDPVYTTFAFAVLTLFGLWLMRESRKYVVIE
Ga0182033_100053481	3300016319	Soil	QAYEMIRAGVFGTTITTYGDPGYTTFALAILTLFGLWLMREVRKYVVIE
Ga0182033_100531533	3300016319	Soil	QPYTQAYEMIRAGVFGTTITTYGDPGYTTFVLAVLTLFGLWLMRESRRYIVIE
Ga0182033_103020873	3300016319	Soil	QPYTQSYEMLRGGMFGTTITTYGDPAYTTFALAVLTLFGLWLMRESRKYVVIE
Ga0182035_111393261	3300016341	Soil	TIATYGDPAYATFALAILTFLGLWLMRQARGYIMIE
Ga0182035_115221822	3300016341	Soil	VFALPVLLIWRMTRAVFGTTVKTYGDPMYTACVLAVMTLFGLWLPREGRRYVMAE
Ga0182032_100125271	3300016357	Soil	AGVFGTTITTYGDPGYTTFALAVLTLLGLWLMRDSRKYVVIE
Ga0182034_106528892	3300016371	Soil	GTTITTYTDPAYTTFVLAILTLFGLWLMRESRKYVVIE
Ga0182040_101566592	3300016387	Soil	MIRAGVFGSTITTHGDPGYTTFALAILTLFGLWLLRESRKYVVIE
Ga0182040_102019743	3300016387	Soil	VFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKYIVIE
Ga0182040_104843991	3300016387	Soil	TLRSIALYQPYTQAYEMVRGGVFGTTITTYTDPAYTTFVLALLTLFGLWLMRESRKYVVI
Ga0182037_102725481	3300016404	Soil	QSYEMIRAGVFGTTITTYGDPAYTTFALAILTLFGLWLMREVRKYVVIE
Ga0182037_109090552	3300016404	Soil	IRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRDARRYIVIE
Ga0182037_112815711	3300016404	Soil	QPYTQAYEMIRGGVFGTTITTYTDPAYTTFVLAILTLFGLWLMREGHKYVVIE
Ga0182039_108663372	3300016422	Soil	IALYQPYTQAYEMVRGGVFGTTITTYTDPAYTTFVLAILTLFGLWLMRESRKYVVIE
Ga0182038_111316201	3300016445	Soil	GVFGTTVKTYGDPLYTTWVLAVLTLFGLWLLRDGRRYVVAE
Ga0187816_100062154	3300017995	Freshwater Sediment	MIRARVFGTTMTIYRDPAYKTAVLGISTLFGLWLMREDLNTL
Ga0213878_101368462	3300021444	Bulk Soil	QPYTQAYEMIRAGVFGNTIKTYGDPVYTTCVLAVMTLAGLWLLREGRRYVVAE
Ga0210390_110055141	3300021474	Soil	YTQAYEMIRAGVFGDVIKTYGDPGYTAFILAILTLIGLWVMREGRKYVVVE
Ga0187846_101810572	3300021476	Biofilm	IRAGVLGHSITTYGDPAYTTVGLAGLALFGLWVLREGRKYLVIE
Ga0210402_111393652	3300021478	Soil	TVKTYGDPVYTTFVLAILTLFGLWLLREGRKYVVVE
Ga0126371_101173834	3300021560	Tropical Forest Soil	MIRASVFGTTVKTYEDLMYTACGLAVMTLVGLWLLREGGRSVMAE
Ga0126371_122477411	3300021560	Tropical Forest Soil	GVGRTITTQSDAAYTTFALAILTLFGLWLMRESRKYVVIE
Ga0126371_126315972	3300021560	Tropical Forest Soil	AYEMIRGGVFGTTITTYGDPAYTTFSLAILTLFGMWLMREGRKYVVIE
Ga0126371_127933922	3300021560	Tropical Forest Soil	RAGVFGNTIKTYGDPVYTTCVLAVLTLFGLWLLREGRRYVVAE
Ga0209154_12740622	3300026317	Soil	TIKTYGDPGYTTFALAILTLFGLWQLREGRKYVVVE
Ga0209004_10666562	3300027376	Forest Soil	GTTITTYGDPAYTTFALAILTLFGLWLMRDSRKYVVIE
Ga0209447_101048142	3300027701	Bog Forest Soil	MIRVRVFATPIYGDPADTTFFLAILTLFGLWLMHEARK
Ga0209448_100214413	3300027783	Bog Forest Soil	MIRVRVFAAPTYGDPADTTFFLAILTLFGLWLMREARKHVVIE
Ga0209656_100408072	3300027812	Bog Forest Soil	MIRVRVFAAPTYGDPADTTFFLAILTLFSLWLLREARKHVVIE
Ga0170834_1106663921	3300031057	Forest Soil	RAGVFGTTITTYGDPGYTTFALAILTLLGLWLMREARQYIVIE
Ga0308189_102369292	3300031058	Soil	YLQAYEMIRAGVFGASIRTYGDPAYTALALAILTLFGLWLMREGRKYVVVE
Ga0318516_104778392	3300031543	Soil	MPRAWVFGATIRTYSDPAYATFALAVLTLFGMWLMRESRKYVVIE
Ga0318541_102999252	3300031545	Soil	VFGTTITTYGDPAYTTFALAILTLFGLWLMREVRKYVVIE
Ga0318541_104712241	3300031545	Soil	EMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKHVVIE
Ga0318571_104172371	3300031549	Soil	ALFQPYTQAYEIIRAGVFGTTITTYGDPAYTTFALAILTLFGLWLMRDARQYIVIE
Ga0310915_104558971	3300031573	Soil	GVFGTTITTYGDPAYTTFVLAILTLFGLWLMRDARRYIVIE
Ga0318496_104659901	3300031713	Soil	VFGTTITTYGDPAYTTFALAILTLFGLWLMRESRKYVVIE
Ga0318500_103905871	3300031724	Soil	LQPYTQAYEMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRDARRYIVIE
Ga0306918_101297311	3300031744	Soil	RAGVFGATITTYGDPGYTTFALAALTLIGLWLMREARQYIVIE
Ga0306918_107736682	3300031744	Soil	IIRAGVFGTTIATYGDPAYATFALAILTFLGLWLMRQARGYIMIE
Ga0318494_105343302	3300031751	Soil	VFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKYVVIE
Ga0318521_102123871	3300031770	Soil	VFGTTITTYGDPAYTTFALAALTLIGLWLMREARQYIVIE
Ga0318546_111362081	3300031771	Soil	EMIRAGVFGATITTYGDPAYTTFVLAILTLFGLWLMREARKYIVLE
Ga0318498_105031221	3300031778	Soil	YTQAYEMIRAGVFGTTITTYGDPVYTTFALAILTLFGLWLMRDARKYIMIE
Ga0318566_106185962	3300031779	Soil	QAYEMIRAGVFGGAIRTYGDPGYTAFILGALTLFGLWLMREGRKYVVVE
Ga0318547_101487251	3300031781	Soil	FGSTIKTYGDPAYTAFILGILTLIGLWVMREGRKYVVVE
Ga0318547_101880973	3300031781	Soil	ALRSVALCQPYTQSYEMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKYVVI
Ga0318547_105076042	3300031781	Soil	LSLTPRAWVFGATIRTYSDPAYATFALAVLTLFGMWLMRESRKYVVIE
Ga0318523_102295372	3300031798	Soil	MIRAGVFGTTITTYGDPGYTTFALAVLTLLGLWLMRDSRKYVVIE
Ga0318568_110140081	3300031819	Soil	GGAIRTYGDPGYTAFILGALTLFGLWLMREGRKYVVVE
Ga0318567_105361132	3300031821	Soil	QAYEMIRAGVFGTTVKTYGDPMYTACVLAVMTLFGLWLLREGRRYVMAE
Ga0307478_118040902	3300031823	Hardwood Forest Soil	YEIIRGGVFGTTITTYGDPAYTTFALAILTLFGLWLMRDSRKYVVIE
Ga0318512_101060581	3300031846	Soil	AYEMIRAGVFGGVIRTYGDPGYAAFILAALTLFGLWLMREGRKYVVVE
Ga0318512_106462761	3300031846	Soil	FQPYTQAYEMIRAGVFGTTITTYGDPGYTTFALAVLTLLGLWLMRDSRKYVVIE
Ga0318495_103570031	3300031860	Soil	GATITTYGDPAYTTFALAILTLFGLWLMRESRKYVVIE
Ga0306925_102145354	3300031890	Soil	LYQPYTQAYEMIRAGVFGRTIMTYGDPGYTTFALAILTLFGLWLMREGRKYVVIE
Ga0318551_100783633	3300031896	Soil	YEMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKHVVIE
Ga0318520_106680492	3300031897	Soil	ALYQPYPQSYEMIRAGVFGTTITTYGDPAYTTFALAILTLFGLWLMREVRKYVVIE
Ga0318520_107432661	3300031897	Soil	YQPYTQSYEMLRGGMFGTTITTYGDPAYTTFALAVLTLFGLWLMRESRKYVVIE
Ga0306923_102574712	3300031910	Soil	MPRAWVFGATIRTYSDPAYTTFALAVLTLFGMWLMRESRKYVVIE
Ga0306923_115838251	3300031910	Soil	PYTQAYEMIRGGVFGTTITTYTDPGYTTFALAILTLFGLWLMREGHKYVVIE
Ga0306923_125711081	3300031910	Soil	LYQPYTQAFEMIRAGVYGNTITAYGDPAYTTLILAILTLFGLWLMREGRKYIVIE
Ga0310912_103394621	3300031941	Soil	MPRAWVFGATIRTYSDPAYATFALAVLTLFGMWLMRESGKYVVIE
Ga0306926_100919051	3300031954	Soil	GMFGTTITTYGDPAYTTFALAVLTLFGLWLMRESRKYVVIE
Ga0306926_112388421	3300031954	Soil	VRTVALYQPYTQAYEMIRAGVFGTTVKTYGDPLYTTWVLAVLTLFGLWLLRDGRRYVVAE
Ga0306922_108828521	3300032001	Soil	GVFGTTITTYTDPAYTTFALAILTLFGLWLMREGHKYVVIE
Ga0310911_104626652	3300032035	Soil	PSLRYVALLQPYTQAYEMVRAGVFGMTITTYGDPAYTTFALAILTLFGLWLMRDARQYIVIE
Ga0310911_106441142	3300032035	Soil	YEIIRAGVFGTTIATYGDPAYATFALAILTFLGLWLMRQARGYIMIE
Ga0310911_107581771	3300032035	Soil	TQAYEMIRAGVFGTTITTYGDPVYTTFALAILTLFGLWLMRDARKYIMIE
Ga0318549_105485611	3300032041	Soil	MFGTTITTYGDPAYTTFALAVLTLFGLWLMRESRKYVVIE
Ga0318545_103347792	3300032042	Soil	YQPYTQSYEMIRAGVFGTTITTYGDPAYTTFALAILTLFGLWLMREVRKYVVIE
Ga0318506_104224791	3300032052	Soil	YEMIRGGVFGATITTYGDPAYTTFALAILTLFGLWLMRESRKYVVIE
Ga0318570_103876212	3300032054	Soil	CQPYTQSYEMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKYVVIE
Ga0318575_102580971	3300032055	Soil	YTQSYEMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRESRKYVVIE
Ga0318533_111635252	3300032059	Soil	TQAYEMIRAGVFGTAVKTYGDPMYTACVLAVMTLFGLWLLREGRRRVMAE
Ga0306924_111945962	3300032076	Soil	VFGTTVKTYGDPMYTACVLAVMTLFGLWLPREGRRYVMAE
Ga0318540_104195512	3300032094	Soil	PRAWVFGATIRTYSDPAYTTFALAVLTLFGMWLMRESRKYVVIE
Ga0306920_1000872754	3300032261	Soil	MIRTGVFGTTVKTYGDPMYTACVLAVMTLFGLWLLREGRRRVMAE
Ga0310914_106681961	3300033289	Soil	LCQPYTQSYEMIRAGVFGTTITTYGDPAYTTFVLAILTLFGLWLMRDARRYIVIE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082944

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences