Metagenome / Metatranscriptome Family F083042

Basic Information
Family ID	F083042
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	46 residues
Representative Sequence	RLRESEADLERELTVGDADRADLTLRLLKSLQPAPITDRPHSWDY
Number of Associated Samples	104
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.92 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (99.115 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.434 % of family members)
Environment Ontology (ENVO)	Unclassified (24.779 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.097 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.11% β-sheet: 19.18% Coil/Unstructured: 76.71%
Feature Viewer

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Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF02775	TPP_enzyme_C	5.31
PF01855	POR_N	0.88
PF06155	GBBH-like_N	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.88
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	0.88
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.12 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.34 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	73.45 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	64.60 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	64.60 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	64.60 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.88 %
Unclassified	root	N/A	0.88 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	64.60 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.88 %
Unclassified	root	N/A	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000732\|JGI12023J11887_1010978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	540	Open in IMG/M
3300001867\|JGI12627J18819_10278949	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300005165\|Ga0066869_10057596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	699	Open in IMG/M
3300005167\|Ga0066672_10813676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	587	Open in IMG/M
3300005336\|Ga0070680_101395925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	606	Open in IMG/M
3300005355\|Ga0070671_100228717	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300005436\|Ga0070713_102103460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	547	Open in IMG/M
3300005454\|Ga0066687_10142690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1258	Open in IMG/M
3300005533\|Ga0070734_10446137	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005539\|Ga0068853_100807834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	898	Open in IMG/M
3300005546\|Ga0070696_101100408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	668	Open in IMG/M
3300005556\|Ga0066707_10764927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	600	Open in IMG/M
3300006032\|Ga0066696_10798381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	602	Open in IMG/M
3300006175\|Ga0070712_100961181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	738	Open in IMG/M
3300006176\|Ga0070765_101877395	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300007788\|Ga0099795_10044972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1586	Open in IMG/M
3300010043\|Ga0126380_10642643	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300010043\|Ga0126380_10978679	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300010048\|Ga0126373_10115731	All Organisms → cellular organisms → Bacteria	2501	Open in IMG/M
3300010326\|Ga0134065_10073619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1093	Open in IMG/M
3300010358\|Ga0126370_11598042	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300010359\|Ga0126376_12107401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	607	Open in IMG/M
3300010361\|Ga0126378_13447423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	502	Open in IMG/M
3300010362\|Ga0126377_11810532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	686	Open in IMG/M
3300010396\|Ga0134126_11993935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	635	Open in IMG/M
3300012683\|Ga0137398_11149596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	532	Open in IMG/M
3300012918\|Ga0137396_11267920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	514	Open in IMG/M
3300012927\|Ga0137416_11428890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	627	Open in IMG/M
3300012975\|Ga0134110_10106513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1136	Open in IMG/M
3300012986\|Ga0164304_10903839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	691	Open in IMG/M
3300015374\|Ga0132255_101119467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1184	Open in IMG/M
3300016341\|Ga0182035_11589042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	589	Open in IMG/M
3300016371\|Ga0182034_10684759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	871	Open in IMG/M
3300016445\|Ga0182038_10170122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1685	Open in IMG/M
3300017961\|Ga0187778_10572026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	755	Open in IMG/M
3300017961\|Ga0187778_10610395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	732	Open in IMG/M
3300017970\|Ga0187783_10385295	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300017970\|Ga0187783_10618392	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300017970\|Ga0187783_11024120	Not Available	595	Open in IMG/M
3300017974\|Ga0187777_10957151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	618	Open in IMG/M
3300018060\|Ga0187765_10206944	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300018090\|Ga0187770_10815426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	747	Open in IMG/M
3300018468\|Ga0066662_11704115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	659	Open in IMG/M
3300020199\|Ga0179592_10051376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1874	Open in IMG/M
3300020581\|Ga0210399_10189739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1708	Open in IMG/M
3300020581\|Ga0210399_10720511	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300020582\|Ga0210395_10269884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1279	Open in IMG/M
3300021178\|Ga0210408_11129177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	602	Open in IMG/M
3300021402\|Ga0210385_10729488	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300021403\|Ga0210397_11283118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	569	Open in IMG/M
3300021433\|Ga0210391_10161797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1762	Open in IMG/M
3300021475\|Ga0210392_10039358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2842	Open in IMG/M
3300021478\|Ga0210402_10553869	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300021559\|Ga0210409_10284452	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300021560\|Ga0126371_10286870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1769	Open in IMG/M
3300021953\|Ga0213880_10153477	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300024227\|Ga0228598_1092959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	607	Open in IMG/M
3300025903\|Ga0207680_10515663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	852	Open in IMG/M
3300025916\|Ga0207663_10385363	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300025917\|Ga0207660_10868983	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300025927\|Ga0207687_10496815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1018	Open in IMG/M
3300025931\|Ga0207644_10729314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	827	Open in IMG/M
3300025932\|Ga0207690_11501679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	563	Open in IMG/M
3300025937\|Ga0207669_11882087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	511	Open in IMG/M
3300026041\|Ga0207639_10756567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	904	Open in IMG/M
3300026308\|Ga0209265_1081477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	918	Open in IMG/M
3300026316\|Ga0209155_1054311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1548	Open in IMG/M
3300026317\|Ga0209154_1267093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	578	Open in IMG/M
3300026528\|Ga0209378_1283300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	528	Open in IMG/M
3300027505\|Ga0209218_1064812	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300027512\|Ga0209179_1141604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	537	Open in IMG/M
3300027535\|Ga0209734_1026840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1067	Open in IMG/M
3300027821\|Ga0209811_10161292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	836	Open in IMG/M
3300027826\|Ga0209060_10332134	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300028906\|Ga0308309_11504153	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300029636\|Ga0222749_10329680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	795	Open in IMG/M
3300030520\|Ga0311372_10287182	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300031544\|Ga0318534_10685224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	580	Open in IMG/M
3300031546\|Ga0318538_10696446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	551	Open in IMG/M
3300031572\|Ga0318515_10473894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	669	Open in IMG/M
3300031640\|Ga0318555_10010153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4109	Open in IMG/M
3300031681\|Ga0318572_10875705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	533	Open in IMG/M
3300031682\|Ga0318560_10001361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	8457	Open in IMG/M
3300031708\|Ga0310686_102051671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	587	Open in IMG/M
3300031719\|Ga0306917_10616643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	853	Open in IMG/M
3300031720\|Ga0307469_10597476	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300031740\|Ga0307468_102096891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	544	Open in IMG/M
3300031744\|Ga0306918_10628926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	841	Open in IMG/M
3300031744\|Ga0306918_11321739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	554	Open in IMG/M
3300031754\|Ga0307475_10123430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2041	Open in IMG/M
3300031754\|Ga0307475_10926007	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300031769\|Ga0318526_10182200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	857	Open in IMG/M
3300031792\|Ga0318529_10545989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	538	Open in IMG/M
3300031793\|Ga0318548_10415344	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300031794\|Ga0318503_10041885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1376	Open in IMG/M
3300031794\|Ga0318503_10218380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	618	Open in IMG/M
3300031795\|Ga0318557_10090344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1345	Open in IMG/M
3300031795\|Ga0318557_10373806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	655	Open in IMG/M
3300031799\|Ga0318565_10563404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	548	Open in IMG/M
3300031823\|Ga0307478_10795394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	792	Open in IMG/M
3300031831\|Ga0318564_10382756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	616	Open in IMG/M
3300031846\|Ga0318512_10212010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	949	Open in IMG/M
3300031859\|Ga0318527_10105658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1159	Open in IMG/M
3300031879\|Ga0306919_11267518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	559	Open in IMG/M
3300031910\|Ga0306923_12430574	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031962\|Ga0307479_11909834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	544	Open in IMG/M
3300032042\|Ga0318545_10296683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	581	Open in IMG/M
3300032063\|Ga0318504_10026978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2242	Open in IMG/M
3300032094\|Ga0318540_10495009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	590	Open in IMG/M
3300032180\|Ga0307471_100879387	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300032782\|Ga0335082_10032116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5564	Open in IMG/M
3300032783\|Ga0335079_11462898	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300032955\|Ga0335076_10543848	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.15%
Plants	Host-Associated → Plants	8.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.65%
Peat	Environmental → Terrestrial → Peat	0.89%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.14%
Loam	Environmental → Terrestrial → Soil → Loam	11.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.08%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.19%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.54%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.89%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000732	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083042

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12023J11887_10109782	3300000732	Forest Soil	DLERELTVGDADRADLTLHLLKSLQPAPITDRPHSWDY*
JGI12627J18819_102789491	3300001867	Forest Soil	RITIWHPRLRDAAADLERELTVGEADRAELTLRLTKSLAPAPLDDRPHSWDY*
Ga0066869_100575961	3300005165	Soil	YRVNIWHPRLRDAGTDLERELTVQDSDRAELTLRLAKPLQPAPLTERPHSWDY*
Ga0066672_108136762	3300005167	Soil	ADLERELTVGDADRADLTLRLLKSLQPAPITDRAHSWDY*
Ga0070680_1013959252	3300005336	Corn Rhizosphere	GIWHPRLRDAETDLERELSVGDTDRADLTLRLAKSLEPEPLIDRPRSWDY*
Ga0070671_1002287171	3300005355	Switchgrass Rhizosphere	RLGDTETDLARELSVGESDRAELTLRLTRGLQPAPLTDRPHSWDY*
Ga0070713_1021034601	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ADLERQLTVIDTDRAELTLRLAKPLQPAPLTERPHSWDY*
Ga0066687_101426902	3300005454	Soil	PRMRETEADLERELTVGDADRAELTVHLGKSLLPAPISDRPHSWDY*
Ga0070734_104461371	3300005533	Surface Soil	ERELTVGEGDHAELTLRLLKSLEPAPIARQHSWDY*
Ga0068853_1008078342	3300005539	Corn Rhizosphere	IWHPRLRDAGTDLERELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY*
Ga0070696_1011004082	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GRYTVGIWHPRLRDAEADLERELSVGETDRADLTLRLGKSLEPAPLIDRPHSWDY*
Ga0066707_107649272	3300005556	Soil	RETEADLERELTVGDADRAELTVHLGKSLLPAPISDRPHSWDY*
Ga0066696_107983812	3300006032	Soil	MRETEADLERELTVGDADRAELTVHLGKSLLPAPISDRPHSWDY*
Ga0070712_1009611812	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RLRDTETDLARELTVGEGDRAELTLRLTRGLQPAPLTDRPHSWDY*
Ga0070765_1018773952	3300006176	Soil	PSELTRELMVGEGDRADLTVRLGKALEPARLTDRPHSWD*
Ga0099795_100449723	3300007788	Vadose Zone Soil	YQVSIWHPRLRESDTDLQRELTVGDADRADLQLHLLKSLQPAPINDRPHSWDY*
Ga0126380_106426432	3300010043	Tropical Forest Soil	ARELTVGESDRAELTLHLSRSLQPAPLTDRPHSWDY*
Ga0126380_109786792	3300010043	Tropical Forest Soil	RVVLWHPRLRDDETDLARELTVGEGDRAELTLRLSRSLQPGPLADRPHSWDY*
Ga0126373_101157311	3300010048	Tropical Forest Soil	RYRVELWHPRLRDSEADLERELTIGETDRTDMTLRLSKPLQPAPLARQPHSWDY*
Ga0134065_100736192	3300010326	Grasslands Soil	DLERELTVGDADRADLTLRLLKSLQPAPITDRPHSWDY*
Ga0126370_115980421	3300010358	Tropical Forest Soil	HPRLRDESGELERELTVGDGDRAELTLRVQKALQPAQLTAHPHSWDY*
Ga0126376_121074012	3300010359	Tropical Forest Soil	GLRDNEAELGRELTVAEAGRAQLTPSMSRPLQPAPLTVRPHSRDY*
Ga0126378_134474232	3300010361	Tropical Forest Soil	RVRELTVGESDRAELTLRLSRPLQPAPLNDRPHSWDY*
Ga0126377_118105322	3300010362	Tropical Forest Soil	GRELTVADADRAELTLRLSRPLQPAPLTNRPHSWDY*
Ga0134126_119939351	3300010396	Terrestrial Soil	LGDTETDLARELSVGEGDRAELTLRLTRGLQPAPLTDRPHSWDY*
Ga0137398_111495961	3300012683	Vadose Zone Soil	IWHPRLRESDTDLQRELTVGDADRADLQLHLLKSLQPAPITDRPHSWDY*
Ga0137396_112679202	3300012918	Vadose Zone Soil	VERELTVGDADRSDLTLRLLKSLQSAPIADRPHSWDY*
Ga0137416_114288901	3300012927	Vadose Zone Soil	TDLQRELTVGDADRADLQLHLLKSLQPTPITDRPHSWDY*
Ga0134110_101065132	3300012975	Grasslands Soil	RLRESEADLERELTVGDADRADLTLRLLKSLQPAPITDRPHSWDY*
Ga0164304_109038392	3300012986	Soil	RELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY*
Ga0132255_1011194671	3300015374	Arabidopsis Rhizosphere	ERELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY*
Ga0182035_115890421	3300016341	Soil	RLRDSESDLERELTVGEGDRADLTLHLSKPLQPARLTDRPHSWDY
Ga0182034_106847591	3300016371	Soil	RIRDDEADLRRELTVGDADRAELTLRLSRPPQPAPLTNRPHSWDY
Ga0182038_101701221	3300016445	Soil	RELTVGEGDRAELTLRLTRGLQPAPLAERPHSWDY
Ga0187778_105720262	3300017961	Tropical Peatland	RLREPESNLDRELAIGDAERAELTVQLSKPLQPAPLHDHPHTWDY
Ga0187778_106103952	3300017961	Tropical Peatland	AWSTEVTRGRYRIAVWHPRMRESEADLERELTVGETDHAELTLRLTKTLAPAPLSDRRHSWDY
Ga0187783_103852951	3300017970	Tropical Peatland	NADLERELTVGEGDRADLTLRLSKPLQPAPLADRPHSWDY
Ga0187783_106183922	3300017970	Tropical Peatland	DSESDLERELTIGDGDRAALTLHLAKPLQPAPLTDRPHSWD
Ga0187783_110241202	3300017970	Tropical Peatland	ERVKSVRELAVEGDRAELTLRLTKPLQPAPLADRPHSWDY
Ga0187777_109571512	3300017974	Tropical Peatland	REDAPDLERELTVGDNDRADLTVHLSKSLQPAPLTDRPHSWDY
Ga0187765_102069442	3300018060	Tropical Peatland	EESDLARELTVNEGDRAELTLHLTRLLQPAPLSDRPHSWDY
Ga0187770_108154262	3300018090	Tropical Peatland	LWHPRLREPDAEVERELSVGDADRAELTVHLSRPLQPAPLAPDPHSQDY
Ga0066662_117041152	3300018468	Grasslands Soil	SIWHPRMRETEADLEHELTVGDADRAELTVHLGKSLLPAPISDRPHSWDY
Ga0179592_100513761	3300020199	Vadose Zone Soil	RESDTDLQRELTVGDADRADLQLHLLKSLQPAPINDRPHSWDY
Ga0210399_101897393	3300020581	Soil	LERELTVGDADRADLTLHLLKSLQPAPIADRPHSWDY
Ga0210399_107205111	3300020581	Soil	EVTRGRYRISVWHPRMRDAEADSERELTVGQSDHAELTLKLAKPLAPARLADRPHSWDY
Ga0210395_102698841	3300020582	Soil	YRIALWHPRLRENDANLQRELTVAEGERAELTLSLSKPLQPAELTDRPHSWDY
Ga0210408_111291772	3300021178	Soil	LWHPRLRESEADLERELTIAEADRAELTLHLTKTLQPARLAERPHSWDY
Ga0210385_107294882	3300021402	Soil	PRVRDNDLERELMVGDADSAELTLRLAKPLQPAPLTDRPHSWDY
Ga0210397_112831182	3300021403	Soil	GRYQITIWHPRTRESEADLQRELTIGDGDRADLTVRLQKALQPAPIADRPHSWDY
Ga0210391_101617973	3300021433	Soil	RYRVALWHPRLRENDANLQRELTVAEGERAELTLSLSKPLQPAELTDRPHSWDY
Ga0210392_100393581	3300021475	Soil	EVTRGHYEVSLWHPRIRDDSADLERQLTVSESDRAELTLRLAKPLQPAPLTERPHSWDY
Ga0210402_105538691	3300021478	Soil	VTRGHYAVSLWHPRIRDDGADLERQLTVSESDRAELTLRLAKPLQPAPLTEQRLHSWDY
Ga0210409_102844521	3300021559	Soil	RIRDDGADLERQLTVSESDRAELTLRLAKPLQPAPLTERPHSWDY
Ga0126371_102868701	3300021560	Tropical Forest Soil	PRMRENEADLERELTVGESDHAELTLRLTKSLQPAPIADRPHSWDY
Ga0213880_101534771	3300021953	Exposed Rock	REEAADLERELTVGETDRAELTLRLSRPLLPAPLGNRPHSWDY
Ga0228598_10929591	3300024227	Rhizosphere	RELSVGEADHAELTLRLTKSLTPAPLAERPHSWDYQ
Ga0207680_105156631	3300025903	Switchgrass Rhizosphere	DLERELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY
Ga0207663_103853631	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	PRIRDDSADLERQLTVIDTDRAELTLRLAKPLQPAPLTQRPHSWDY
Ga0207660_108689831	3300025917	Corn Rhizosphere	VGIWHPRLRDAETDLERELSVGDTDRADLTLRLAKSLEPEPLIDRPRSWDY
Ga0207687_104968152	3300025927	Miscanthus Rhizosphere	NIWHPRLRDAGTDLERELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY
Ga0207644_107293141	3300025931	Switchgrass Rhizosphere	RLGDTETDLARELSVGESDRAELTLRLTRGLQPAPLTDRPHSWDY
Ga0207690_115016792	3300025932	Corn Rhizosphere	VNIWHPRLRDAGTDLERELTVQESDRAELTLRLAKPLQPAPLSERPHSWDY
Ga0207669_118820872	3300025937	Miscanthus Rhizosphere	AGTDLERELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY
Ga0207639_107565671	3300026041	Corn Rhizosphere	YRVNIWHPRLRDAGTDLERELTVQESDRAELTLRLAKPLQPAPLTERPHSWDY
Ga0209265_10814771	3300026308	Soil	ADLERELTVGDADRADLTLRLLKSLQPAPITDRPHSWDY
Ga0209155_10543111	3300026316	Soil	SIWHPRMRETEADLERELTVGDADRAELTVHLGKSLLPAPITDRPHSWDY
Ga0209154_12670932	3300026317	Soil	LERELTVGDADRADLTLRLLKSLQPAPITDRAHSWDY
Ga0209378_12833002	3300026528	Soil	MRETEADLERELTVGDAGRAELTVHLGKSLLPAPISDRPHSWDY
Ga0209218_10648122	3300027505	Forest Soil	ARDEPSELTRELMVGEGDRADLTVRLGKALEPARLTDRPHSWD
Ga0209179_11416041	3300027512	Vadose Zone Soil	PRLRESDTDLQRELTVGDADRADLQLHLLKSLQPAPINDRPHSWDY
Ga0209734_10268402	3300027535	Forest Soil	PRLRDSAADLERELTVGDADRADLTLHLLKSLQPAPIADRPHSWDY
Ga0209811_101612921	3300027821	Surface Soil	GRELTVADADRAELTLRLSRPLQPAPLTDRPHSWDY
Ga0209060_103321342	3300027826	Surface Soil	NTDLERELTVGEGDHAELTLRLLKSLEPAPIARQHSWDY
Ga0308309_115041531	3300028906	Soil	RDEPSELTRELMVGEGDRADLTVRLGKALEPARLTDRPHSWD
Ga0222749_103296801	3300029636	Soil	QVTIWHPRLRDSPADLERELTVGDADRADLTLHLLKSLQPAPIADRPHSWDY
Ga0311372_102871824	3300030520	Palsa	VPRGHYRVELWHPRARDEPAELTRELTVGEADRADLTVRLGKTLEPARLADRAHSWD
Ga0318534_106852241	3300031544	Soil	VELWHPRLRDNETELARELTVGESDRAELTLRLSRPLQPAPLSDRPHSWDY
Ga0318538_106964462	3300031546	Soil	DDEADLSRELTVGDADRAELTLRLSRPPQPAPLTDRPHSWDY
Ga0318515_104738942	3300031572	Soil	LARELTVGEGDRAELTLRLTRGLQPAPLAERPQSWDY
Ga0318555_100101534	3300031640	Soil	ALWHPRLRDNETDLERELTVGDGDRAEFTLRLTHGLQPAPLADRPHSWDY
Ga0318572_108757052	3300031681	Soil	VELWHPRIRDDEADLRRELTVGDADRAELTLRLSRPPQPAPLTDRPHSWDY
Ga0318560_100013619	3300031682	Soil	LERELTVGDSDRADLTLRLSKPLQPAPLSDRPHSWDY
Ga0310686_1020516711	3300031708	Soil	RELTVGDTDRADLTLRLAKPLEPAPITDRPHSWDY
Ga0306917_106166431	3300031719	Soil	RGHYRVELWHPRLRDNETELARELTVGESDRAELTLRLSRPQQPAPLSDRPHSWDY
Ga0307469_105974761	3300031720	Hardwood Forest Soil	ERQLTVSETDRAELTLRLAKPLQPAPLAERPHSWDY
Ga0307468_1020968912	3300031740	Hardwood Forest Soil	DLGRELTVADADRAELTLRLSRPLQPAPLTDRPHSWDY
Ga0306918_106289262	3300031744	Soil	DLARELTVGEGDRAELTLRLTRGLQPAPLAERPHSWDY
Ga0306918_113217391	3300031744	Soil	HPRLRDNETELARELSVGEGDRAELTLRLTRGLQPAPLAERPHSWDY
Ga0307475_101234303	3300031754	Hardwood Forest Soil	PRLRESAADLERELTVGEDDRADLTLHLQKSLQPAPITDRPHSWDY
Ga0307475_109260071	3300031754	Hardwood Forest Soil	SNEVVRGRYRITIWHPRMRDEPGDLERELTVGEADHAELTLRLGKPLTPAPLADRPHSWD
Ga0318526_101822002	3300031769	Soil	YRVAVWHPRLRENSEDLERELTVGDSDRADLTLRLSKPLQPAPLSDRPHSWDY
Ga0318529_105459891	3300031792	Soil	ALWHPRLRENSEDLERELTVGDSDRADLTLRLSKPLQPAPLSDRPHSWDY
Ga0318548_104153442	3300031793	Soil	LRDSEADLERELTVGETDRADLTLRLSKPLQPAPLGGRAHSWDY
Ga0318503_100418851	3300031794	Soil	LWHPRLRDNETDLERELTVGEGDRAELTLRLTHGLQPAPLADRPHSWDY
Ga0318503_102183801	3300031794	Soil	YRVALWHPRLRENSEDLERELTVGDSDRADLTLRLSKPLQPAPLSDRPHSWDY
Ga0318557_100903442	3300031795	Soil	PRIRDDEADLRRELTVGDADRAELTLRLSRPPQPAPLTNRPHSWDY
Ga0318557_103738061	3300031795	Soil	RDNETELARELTVGESDRAELTLRLSRPLQPAPLSDRPHSWDY
Ga0318565_105634041	3300031799	Soil	ALWHPRLRDNETDLERELTVGEGDRAELTLRLTHGLQPAPLAERPHSWDY
Ga0307478_107953942	3300031823	Hardwood Forest Soil	SIWHPRVRESAADLERELTVGEDDRADLTLHLQKSLQPAPITDRPHSWDY
Ga0318564_103827562	3300031831	Soil	VAVWHPRLRENSEDLERELTVGDSDRADLTLRLSKPLQPAPLSDRPHSWDY
Ga0318512_102120101	3300031846	Soil	VELWHPRIRDDEADLRRELTVGDADRAELTLRLSRPPQPAPLTNRPHSWDY
Ga0318527_101056581	3300031859	Soil	LWHPRIRDDEADLRRELTVGDADRAELTLRLSRPPQPAPLTDRPHSWDY
Ga0306919_112675181	3300031879	Soil	SEDLERELTVGDSDRADLTLRLSKPLQPAPLSDRPHSWDY
Ga0306923_124305741	3300031910	Soil	DNESDLERELTVGEGDRADLTLRLAKPLQPGPLAERPHSWDY
Ga0307479_119098341	3300031962	Hardwood Forest Soil	WHPRVRESEADLVRELTVAEDDRADLQLHLLKSLQPAPITDRPHSWDY
Ga0318545_102966831	3300032042	Soil	LWHPRLRDNETDLARELTVGEGDRAELTLRLTRGLQPAPLAERPHSWDY
Ga0318504_100269783	3300032063	Soil	ARELTVGEGDRAELTLRLTRGLQPAPLAERPHSWDY
Ga0318540_104950092	3300032094	Soil	ALWHPRLRDNETDLARELTVGEGDRAELTLRLTRGLQPAPLAERPHSWDY
Ga0307471_1008793871	3300032180	Hardwood Forest Soil	RDEPGDLERELTVGEADHAELTLRLGKPLTPAPLADRPHSWAY
Ga0335082_100321168	3300032782	Soil	GAWSTEVTRGRYRIAVWHPRMRESEADLERELTVGETDHAELTLRLTKTLTPAPLSERRHSWDY
Ga0335079_114628982	3300032783	Soil	GSWAAELAPGRYQVTIWHPRLRAEAKDLAREFAVGADDRAEFTIRLAKPLQPAPLDRPHSWDY
Ga0335076_105438481	3300032955	Soil	VNLWHPRVRDEGADLERQLTVSEGDRAELTLRLVKPLQPAPLERPHSWDY

Hidden Markov Model


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