Metagenome / Metatranscriptome Family F083105

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083105
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	62 residues
Representative Sequence	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN
Number of Associated Samples	79
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.19 %
% of genes near scaffold ends (potentially truncated)	20.35 %
% of genes from short scaffolds (< 2000 bps)	66.37 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.496 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (20.354 % of family members)
Environment Ontology (ENVO)	Unclassified (26.549 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.708 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.44% β-sheet: 24.44% Coil/Unstructured: 71.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00313	CSD	8.85
PF11752	DUF3309	5.31
PF13545	HTH_Crp_2	3.54
PF01471	PG_binding_1	2.65
PF00072	Response_reg	1.77
PF00691	OmpA	1.77
PF00882	Zn_dep_PLPC	1.77
PF00534	Glycos_transf_1	0.88
PF13439	Glyco_transf_4	0.88
PF00155	Aminotran_1_2	0.88
PF02470	MlaD	0.88
PF13701	DDE_Tnp_1_4	0.88
PF11154	DUF2934	0.88
PF08924	DUF1906	0.88
PF01757	Acyl_transf_3	0.88
PF14534	DUF4440	0.88
PF01087	GalP_UDP_transf	0.88
PF04366	Ysc84	0.88
PF13188	PAS_8	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.50 %
Unclassified	root	N/A	11.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.50 %
Unclassified	root	N/A	11.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.50 %
Unclassified	root	N/A	11.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.80 %
Unclassified	root	N/A	11.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	45.13 %
Unclassified	root	N/A	11.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.31 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.25 %
Unclassified	root	N/A	11.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.42 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.88 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.25 %
Unclassified	root	N/A	11.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.42 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.88 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.88 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.25 %
Unclassified	root	N/A	11.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.88 %
Bryobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter	0.88 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.88 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.25 %
Unclassified	root	N/A	11.50 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.88 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.88 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	44.25 %
Unclassified	root	N/A	11.50 %
Granulicella sp. GAS466	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	0.88 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.88 %
Bryobacter aggregatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	0.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.88 %
Acidobacteria bacterium 13_1_20CM_4_56_7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01D59WW	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
2228664022\|INPgaii200_c0616871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100626312	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300002914\|JGI25617J43924_10008541	All Organisms → cellular organisms → Bacteria	3270	Open in IMG/M
3300003505\|JGIcombinedJ51221_10014308	All Organisms → cellular organisms → Bacteria	2663	Open in IMG/M
3300004099\|Ga0058900_1385547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300004100\|Ga0058904_1376502	Not Available	576	Open in IMG/M
3300004101\|Ga0058896_1394210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1180	Open in IMG/M
3300004102\|Ga0058888_1443917	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1176	Open in IMG/M
3300004139\|Ga0058897_11009286	All Organisms → cellular organisms → Bacteria → Acidobacteria	1202	Open in IMG/M
3300004631\|Ga0058899_10036244	All Organisms → cellular organisms → Bacteria → Acidobacteria	606	Open in IMG/M
3300004631\|Ga0058899_11650935	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300004631\|Ga0058899_12200856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2007	Open in IMG/M
3300004631\|Ga0058899_12226064	All Organisms → cellular organisms → Bacteria → Acidobacteria	1327	Open in IMG/M
3300005434\|Ga0070709_10073913	Not Available	2208	Open in IMG/M
3300005435\|Ga0070714_100293134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1515	Open in IMG/M
3300005436\|Ga0070713_100681987	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300005534\|Ga0070735_10150893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1441	Open in IMG/M
3300005538\|Ga0070731_10031303	All Organisms → cellular organisms → Bacteria	3600	Open in IMG/M
3300005542\|Ga0070732_10253203	All Organisms → cellular organisms → Bacteria → Acidobacteria	1055	Open in IMG/M
3300006047\|Ga0075024_100317193	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300006050\|Ga0075028_100033635	All Organisms → cellular organisms → Bacteria	2368	Open in IMG/M
3300006050\|Ga0075028_100093973	All Organisms → cellular organisms → Bacteria → Acidobacteria	1519	Open in IMG/M
3300006057\|Ga0075026_100237213	All Organisms → cellular organisms → Bacteria → Acidobacteria	973	Open in IMG/M
3300006059\|Ga0075017_100636932	Not Available	817	Open in IMG/M
3300006059\|Ga0075017_100681999	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300006059\|Ga0075017_100946130	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300006162\|Ga0075030_101357576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	557	Open in IMG/M
3300006174\|Ga0075014_100030651	All Organisms → cellular organisms → Bacteria → Acidobacteria	2168	Open in IMG/M
3300007258\|Ga0099793_10025995	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2447	Open in IMG/M
3300007258\|Ga0099793_10140668	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300007258\|Ga0099793_10205233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	946	Open in IMG/M
3300009088\|Ga0099830_10253457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1393	Open in IMG/M
3300011120\|Ga0150983_12198725	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300011120\|Ga0150983_13678640	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300011120\|Ga0150983_14503969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2061	Open in IMG/M
3300011120\|Ga0150983_14929294	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300011120\|Ga0150983_15146006	All Organisms → cellular organisms → Bacteria → Acidobacteria	3619	Open in IMG/M
3300012200\|Ga0137382_10062594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2359	Open in IMG/M
3300012200\|Ga0137382_10675542	Not Available	740	Open in IMG/M
3300012203\|Ga0137399_10033170	All Organisms → cellular organisms → Bacteria	3582	Open in IMG/M
3300012203\|Ga0137399_10122077	All Organisms → cellular organisms → Bacteria → Acidobacteria	2048	Open in IMG/M
3300012203\|Ga0137399_10247824	All Organisms → cellular organisms → Bacteria → Acidobacteria	1460	Open in IMG/M
3300012205\|Ga0137362_10926308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300012208\|Ga0137376_10131916	All Organisms → cellular organisms → Bacteria	2139	Open in IMG/M
3300012285\|Ga0137370_10260789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300012362\|Ga0137361_11399298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300012582\|Ga0137358_10188967	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1405	Open in IMG/M
3300012685\|Ga0137397_10117840	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300012918\|Ga0137396_10031757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3503	Open in IMG/M
3300012918\|Ga0137396_10421685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	989	Open in IMG/M
3300012944\|Ga0137410_10113850	All Organisms → cellular organisms → Bacteria → Acidobacteria	2022	Open in IMG/M
3300012957\|Ga0164303_11411508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300012980\|Ga0168315_101445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2716	Open in IMG/M
3300014498\|Ga0182019_11473222	Not Available	506	Open in IMG/M
3300015371\|Ga0132258_11143443	All Organisms → cellular organisms → Bacteria → Acidobacteria	1968	Open in IMG/M
3300015371\|Ga0132258_11510224	All Organisms → cellular organisms → Bacteria → Acidobacteria	1696	Open in IMG/M
3300017927\|Ga0187824_10305633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300018051\|Ga0184620_10215483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300019879\|Ga0193723_1051795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1206	Open in IMG/M
3300019882\|Ga0193713_1079747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	922	Open in IMG/M
3300019999\|Ga0193718_1074603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300020004\|Ga0193755_1006425	All Organisms → cellular organisms → Bacteria	3808	Open in IMG/M
3300020170\|Ga0179594_10204595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300020580\|Ga0210403_11179634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300020581\|Ga0210399_10380134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300020581\|Ga0210399_10399650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1146	Open in IMG/M
3300020582\|Ga0210395_11263628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300020583\|Ga0210401_10000231	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	70323	Open in IMG/M
3300020583\|Ga0210401_10012849	All Organisms → cellular organisms → Bacteria	8148	Open in IMG/M
3300020583\|Ga0210401_10039216	All Organisms → cellular organisms → Bacteria	4494	Open in IMG/M
3300020583\|Ga0210401_10064203	All Organisms → cellular organisms → Bacteria	3457	Open in IMG/M
3300021088\|Ga0210404_10160701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300021170\|Ga0210400_11270487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300021170\|Ga0210400_11600033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300021432\|Ga0210384_11166630	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300021559\|Ga0210409_10188080	All Organisms → cellular organisms → Bacteria	1884	Open in IMG/M
3300022531\|Ga0242660_1071114	Not Available	802	Open in IMG/M
3300024330\|Ga0137417_1152943	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3954	Open in IMG/M
3300026498\|Ga0257156_1111236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300026551\|Ga0209648_10011336	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7749	Open in IMG/M
3300026557\|Ga0179587_10601059	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300027371\|Ga0209418_1027969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300027842\|Ga0209580_10515397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300027894\|Ga0209068_10044477	All Organisms → cellular organisms → Bacteria → Acidobacteria	2241	Open in IMG/M
3300027898\|Ga0209067_10597195	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300027911\|Ga0209698_10413111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1053	Open in IMG/M
3300027915\|Ga0209069_10096130	All Organisms → cellular organisms → Bacteria → Acidobacteria	1427	Open in IMG/M
3300027915\|Ga0209069_10415996	Not Available	740	Open in IMG/M
3300028536\|Ga0137415_10002551	All Organisms → cellular organisms → Bacteria	18129	Open in IMG/M
3300028536\|Ga0137415_10934830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300030000\|Ga0311337_10037372	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	3763	Open in IMG/M
3300030294\|Ga0311349_10035643	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	4529	Open in IMG/M
3300031720\|Ga0307469_10002775	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7169	Open in IMG/M
3300031720\|Ga0307469_10015615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3936	Open in IMG/M
3300031720\|Ga0307469_10061307	All Organisms → cellular organisms → Bacteria → Acidobacteria	2433	Open in IMG/M
3300031720\|Ga0307469_10086277	All Organisms → cellular organisms → Bacteria	2148	Open in IMG/M
3300031720\|Ga0307469_10088347	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2129	Open in IMG/M
3300031720\|Ga0307469_10692558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	923	Open in IMG/M
3300031754\|Ga0307475_10721357	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031754\|Ga0307475_10808132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300031754\|Ga0307475_10837978	Not Available	728	Open in IMG/M
3300031754\|Ga0307475_11304104	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300031820\|Ga0307473_10489909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	827	Open in IMG/M
3300031823\|Ga0307478_10023011	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	4419	Open in IMG/M
3300031902\|Ga0302322_102508588	Not Available	635	Open in IMG/M
3300031962\|Ga0307479_10013839	All Organisms → cellular organisms → Bacteria	7562	Open in IMG/M
3300031962\|Ga0307479_11518607	Not Available	626	Open in IMG/M
3300031962\|Ga0307479_12062179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300032180\|Ga0307471_103552953	Not Available	552	Open in IMG/M
3300032770\|Ga0335085_10096369	All Organisms → cellular organisms → Bacteria	3837	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.07%
Aquatic	Environmental → Aquatic	14.16%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.76%
Sediment	Environmental → Aquatic → Sediment	13.27%
Peat	Environmental → Terrestrial → Peat	4.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Geologic	Environmental → Terrestrial → Geologic	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.18%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.42%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Mine	Environmental → Terrestrial → Geologic → Mine	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.32%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.16%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.35%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	14.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.27%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	12.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.42%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.77%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004100	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004101	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF228 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004102	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF212 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012980	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028858	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_2	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_06835620	2170459010	Grass Soil	RRTSMAIFDETYRVVAVESQRLTIQGVASGEIMTIVNAAPETPLTSEDYPLGQLVALTDPASELPN
INPgaii200_06168712	2228664022	Soil	MAIFDENYRVVAVESQRLTIQGVLSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN
INPhiseqgaiiFebDRAFT_1006263121	3300000364	Soil	MAIFDENYRVVAVESQRLTIQGVLSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN*
JGI25617J43924_100085412	3300002914	Grasslands Soil	MALFDETYRVIAVESQRLTIQGILSGEIITIANFAPDSPLTQEDHPLGQLIVLTDPSTALQN*
JGIcombinedJ51221_100143082	3300003505	Forest Soil	MAIFDETYRVVAVESQRLTIQGVATGEVMTIVNTAPGAPLTPEDYPLGQLIALTDPTTELQN*
Ga0058900_13855471	3300004099	Forest Soil	MAIFDETYRVVAVESQRLTIQGIFSGEIMTIVNTAPETPLTQEDYPLGQLIALTDPSAAPQN*
Ga0058904_13765021	3300004100	Forest Soil	MALFDETYRVIAVESQRLTIQGILSGEIITIANFTPDSPLTQEDHPLGQLIVLTDPSTALQN
Ga0058896_13942102	3300004101	Forest Soil	TMAIFDETYRVVAVESQRLTIQGVASGEVMTIVSTVPGSPLTQEDYPVGQLIALTDPTTDLPN*
Ga0058888_14439172	3300004102	Forest Soil	TMAIFDETYRVVAVESQRLTIQGVATGEVMTIVNTAPGAPLTPEDYPLGQLIALTDPTTELQN*
Ga0058897_110092861	3300004139	Forest Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVTTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0058899_100362441	3300004631	Forest Soil	MGIAIFDETYRVVAVDSQRLTIQGIFSGEIMTIVSTAPGALTPEHYPLGQLITLTDPSTELQN*
Ga0058899_116509351	3300004631	Forest Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLI
Ga0058899_122008563	3300004631	Forest Soil	MAIFDETYRVVGVESQRLTIQGILSGEIMTIVNTAPGCPLTLEEYPLGQLIALTDPSTAFHN*
Ga0058899_122260642	3300004631	Forest Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0070709_100739131	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MAIFDETYRVVAVESQRLTIQGVASGEIMTIVNAAPETPLTSEDYPLGQLVALTDPASELPN*
Ga0070714_1002931342	3300005435	Agricultural Soil	MAIFDETYRVVGVETQRLTIQGILSGEIMTIVNTAPGYPLTPEDYPLGQLIALTDPS
Ga0070713_1006819871	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MAIFDETYRVVAVESQRLTIQGVASGEIMTIVNAAPETPLTSEDYPLGQLVALTDPASE
Ga0070735_101508932	3300005534	Surface Soil	MSIFDEQYKVVAVESDCLFVQGIRNGEVLTITNASPELPLTQEDYPLGQLIALSDPSTWPMN*
Ga0070731_100313034	3300005538	Surface Soil	MAIFDETYRVVAVESQRLTIQGVATGEVITIVNTVPGTPLTPEDYPLGQLIALTDPTTKLQN*
Ga0070732_102532032	3300005542	Surface Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALPN*
Ga0075024_1003171931	3300006047	Watersheds	VKIFDETYRVVAVESQHLTIQGVASGEIITIVNTAPEAPLTPKDYPLGQLVALTDPSTELQN*
Ga0075028_1000336352	3300006050	Watersheds	MALFDETYRVVAVESQRLTIQGTLSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0075028_1000939734	3300006050	Watersheds	VAIFDETYRVVAVESQHLTIQGVASGEIITIVNTAPEAPLTPEDYPLGQLVALTDPSTELQN*
Ga0075026_1002372132	3300006057	Watersheds	MAIFDEAYRVLAVERQRLTIQGILSGEIMTIVNTSPGPPLTQEDYPLGQLIELTDPSTVLQN*
Ga0075017_1006369321	3300006059	Watersheds	MAIFDEPYIVVDVESQRLTLQGMLSGEVITIVNTAQDSPLTQEDYPLGQLIALTDPSTALLN*
Ga0075017_1006819992	3300006059	Watersheds	MALFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTKEDYPLGQLIALSDPSTALQN*
Ga0075017_1009461302	3300006059	Watersheds	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTAL
Ga0075030_1013575762	3300006162	Watersheds	MAIFDETYRVVAVESQRLTIQGMLSGEIMTIVNTAPGSPLTKEDYPLGQLIALTDPSTELQN*
Ga0075014_1000306515	3300006174	Watersheds	MALFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0099793_100259953	3300007258	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTEEDYPLGQLIALTDPSTALQN*
Ga0099793_101406683	3300007258	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGMVSGEIMTIVNTAPESPLRQEDYPPGQLIALSDPSAGVHN*
Ga0099793_102052332	3300007258	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILTGEIMTIVNSAPDSPLTPEDYPLGQLIALTDPSTVLQN*
Ga0099830_102534571	3300009088	Vadose Zone Soil	MALFDETYRVIAVESQRLTIQGILSGEIITIANFAPDSPLTQEDHPLGQLIVLTD
Ga0150983_121987252	3300011120	Forest Soil	MAIFDETYRVVAVESQRLTIQGVASGEVITIVSTVPGSPLTQEDYPVGQLIALTDPTTDLPN*
Ga0150983_136786401	3300011120	Forest Soil	PRRTTMAIFDETYRVVAVESQRLTIQGIASGEIMTIVTTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0150983_145039692	3300011120	Forest Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPEAPLTQEDYPLGQLIALTDPSTALEN*
Ga0150983_149292941	3300011120	Forest Soil	MAMAIFDETYRVVAVDSQRLTIQGIFSGEIMTIVSTAPGTLRPEHYPLGQLITLTDPSTELQN*
Ga0150983_151460063	3300011120	Forest Soil	MALFDETYRVIAVESQRLTIQGILSGEIITIANFTPDSPLTQEDHPLGQLIVLTDPSTALQN*
Ga0137382_100625941	3300012200	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNTAPDSPLTQEDYPLGQLIALTDPSTALQN*
Ga0137382_106755422	3300012200	Vadose Zone Soil	TTMAIFDETYRVVAVESQLLTIQGILSGEIMTIVNTAPDSQLTPEDYPLGQLIALTDPSTALQN*
Ga0137399_100331704	3300012203	Vadose Zone Soil	MAIFDATYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTEEDYPLGQLIALTDPSTALQN*
Ga0137399_101220771	3300012203	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILTGEIMTIVNSAPDSPLTQEDYPLGQLIALTDPSTVLQN*
Ga0137399_102478243	3300012203	Vadose Zone Soil	MAIFDETYRVVAVDSQRLTIQGILSGEIMTIVNSAPDSPLTQEDYPLGQLIALTDP
Ga0137362_109263082	3300012205	Vadose Zone Soil	IFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTEDDYPLGQLIALTDPSTALQN
Ga0137376_101319161	3300012208	Vadose Zone Soil	MAIFDETYRVVAVESQLLTIQGILSGEIMTIVNTAPDSQLTPEDYPLGQLIALTDPSTALQN*
Ga0137370_102607892	3300012285	Vadose Zone Soil	MAIFDETYRVVAVESQLLTIQGILSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0137361_113992981	3300012362	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNTAPDSPLTQEDYPLGQLIALTDP
Ga0137358_101889671	3300012582	Vadose Zone Soil	MAMFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTEDDYPLGQLIALTDPSTALQN*
Ga0137397_101178405	3300012685	Vadose Zone Soil	FDETYRVVAVESQRLTIQGILSGEIMTIVNTAPDSPLTQEDYPLGQLIALTDPSTALQN*
Ga0137396_100317573	3300012918	Vadose Zone Soil	MAIFDETYRVVAVESQCLTIQGIASGEIMTIVNTAPESPLTEEDYPLGQLIALTDPSTALQN*
Ga0137396_104216851	3300012918	Vadose Zone Soil	MAIFDETYRVVAVDSQRLTIQGILSGEIMTIVNSAPDSPLTQEDYPLGQLIALTDPSTVLQN*
Ga0137410_101138503	3300012944	Vadose Zone Soil	AIFDETYRVVAVESQRLTIQGILTGEIMTIVNSAPDSPLTPEDYPLGQLIALTDPSTVLQN*
Ga0164303_114115081	3300012957	Soil	MAIFDETYRVVAVESHRLTIQGNLSGKIMTIVSTIPEAPLRQEDYPVGQLIELRDPSIGLKN*
Ga0168315_1014458	3300012980	Weathered Mine Tailings	MAIFDEPYIVVDVESQRLTLQGMLSGEVITIVNTAPDSPLTQEDYPRGQLVALTDPSTALLN*
Ga0182019_114732221	3300014498	Fen	MAVFDEPYMVVAVESQHLTLQGILSGEIVMIASTAHGDPLTQEDYPLGQLIALTDPSIALPN*
Ga0132258_111434431	3300015371	Arabidopsis Rhizosphere	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNSAPEWPLTQEDYPLGQLIALTDPSTTLQN*
Ga0132258_115102244	3300015371	Arabidopsis Rhizosphere	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN*
Ga0187824_103056331	3300017927	Freshwater Sediment	MAIFDETYRVVAVESQRLTIRGNLSGEIMTIVSTFSEAPLTQEDYPVGQLIALSDPSMGLKN
Ga0184620_102154831	3300018051	Groundwater Sediment	MAIFDETYRVVGVESQRLTIQGILSGEIIAIVNTAPDCPLTAEEYPLGQLIALTDPSTALHN
Ga0193723_10517952	3300019879	Soil	MAIFDETYRVVGVESQRLTIQGILSGEIMTIVNTAPDCPLTAEEYPLGQLIALTDPSTALHN
Ga0193713_10797472	3300019882	Soil	LSRRTTMAIFDETYRVVGVESQRLTIQGILSGEIMTIVNTAPDCPLTAKEYPLGQLIALTDPSTALHN
Ga0193718_10746032	3300019999	Soil	MAIFDETYRVVGVESQRLTIQGILSGEIITIVNTAPDCPLRAEEYPLGQLIALTDPSTALHN
Ga0193755_10064256	3300020004	Soil	MAIFDETYRVVGVESQRLTIQGILSGEIMTIVNTAPDCPLTAKEYPLGQLIALTDPSTALHN
Ga0179594_102045952	3300020170	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNTAPDSPLTQEDYPLGQLIALTDPSTALQN
Ga0210403_111796341	3300020580	Soil	MAIFDETYRVVAVESQRLTIQGVASGEVMTIVSTVPGSPLTQEDYPVGQLIALTDPTTDLPN
Ga0210399_103801342	3300020581	Soil	MAIFDETYRVVAVEGQRLTIQGIASGEIMTIVNTAPEAPLTQEDYPLGQLIALTDPSTALQN
Ga0210399_103996502	3300020581	Soil	MAIFDETYRVVAVESQRLTIQGVASGNVITIVNTAPESPLTQEDYPLGQLIALTDPTANLPN
Ga0210395_112636281	3300020582	Soil	MAIFDETYRVVAVESQRLTIQGIFSGEIMTIVNTAPETPLTQEDYPLGQLIALTDPSAAPQN
Ga0210401_1000023111	3300020583	Soil	MAIFDETYRVVAVESQRLTIQGVATGEVMTIVNTAPGAPLTPEDYPLGQLIALTDPTTELQN
Ga0210401_100128494	3300020583	Soil	MAIFDQTYRVVAVESQRLTIQGVASGEIITIVNTAPESPLTKEDYPLGQLIALTDPTTQRPN
Ga0210401_100392165	3300020583	Soil	MAIFDETYRVVGVESQRLTIQGILSGEIMTIVNTAPGCPLTLEEYPLGQLIALTDPSTAFHN
Ga0210401_100642036	3300020583	Soil	MAIFDETYRVVAVESQRLTIQGVASGEVITIVSTVPGSPLTQEDYPVGQLIALTDPTTDLPN
Ga0210404_101607013	3300021088	Soil	MAIFDETYRVVGVESQRLTIQGILSGEIMTIVNTAPDCPLTQEEYPVGQLIALTDP
Ga0210400_112704872	3300021170	Soil	MAIFDETYRVVAVESQRLTIQGVASGEVMTIVNTAPESPLTQEDYPLGQLIALTDPTTDLPN
Ga0210400_116000331	3300021170	Soil	MAIFDETYRVVAVEGQRLTIQGIASGEIMTIVNTAPESPLTEQDYPLGQLIALTDPSTALQN
Ga0210384_111666302	3300021432	Soil	MAIFDETYRVVAVDSQRLTIQGIFSGEIMTIVSTAPGTLRPEHYPLGQLITLTDPSTELQ
Ga0210409_101880801	3300021559	Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTEEDYPLGQLIALTDPSTALQN
Ga0242660_10711141	3300022531	Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN
Ga0137417_11529433	3300024330	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGMVSGEIMTIVNTAPESPLRQEDYPPGQLIALSDPSAGVHN
Ga0257156_11112361	3300026498	Soil	MAIFDETYRVVAVESQRLTIQGVASGEIMTIVNAAPETPLTSEDYPLGQLVAL
Ga0209648_100113367	3300026551	Grasslands Soil	MALFDETYRVIAVESQRLTIQGILSGEIITIANFAPDSPLTQEDHPLGQLIVLTDPSTALQN
Ga0179587_106010591	3300026557	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILTGEIMTIVNSAPDSPLTPEDYPLGQLIALTDPSTVLQN
Ga0209418_10279691	3300027371	Forest Soil	MPIFDETYRVVAVENQRLTIQGVASGEVMTIVSNVAGSPLTQEDYPVGQLIALTDPTTSLPN
Ga0209580_105153971	3300027842	Surface Soil	MAIFDETYRVVAVESQRLTIQGVATGEVITIVNTVPGTPLTPEDYPLGQLIALTDPTTKLQN
Ga0209068_100444775	3300027894	Watersheds	MALFDETYRVVAVESQRLTIQGTLSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTA
Ga0209067_105971951	3300027898	Watersheds	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTKEDYPLGQLIALTDPSTALPN
Ga0209698_104131112	3300027911	Watersheds	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALPN
Ga0209069_100961301	3300027915	Watersheds	VAIFDETYRVVAVESQHLTIQGVASGEIITIVNTAPEAPLTPKDYPLGQLVALTDPSTELQN
Ga0209069_104159962	3300027915	Watersheds	VKIFDETYRVVAVESQHLTIQGVASGEIITIVNTAPEAPLTPEDYPLGQLVALT
Ga0137415_1000255113	3300028536	Vadose Zone Soil	MAIFDETYRVVAVESQRLTIQGILTGEIMTIVNSAPDSPLTQEDYPLGQLIALTDPSTVLQN
Ga0137415_109348301	3300028536	Vadose Zone Soil	MAIFDETYRVVAVDSQRLTIQGILSGEIMTIVNSAPDSPLTQEDYPLGQLIALTDPSTVLQN
Ga0302216_11098211	3300028858	Fen	VLHQGNQRSSVRTTRRIQATTRRLLMAIFDEPYIVVAVERQHLTLQGILSGKIVMIANTPHGGALTQEDYPLGQLIALTDPSIALPN
Ga0311337_100373725	3300030000	Fen	MAVFDEPYMVVAVESQHLTLQGILSGKIVMIANTPHGGALTQEDYPLGQLIALTDPSIALPN
Ga0311349_100356435	3300030294	Fen	MAIFDEPYIVVAVERQHLTLQGILSGKIVMIANTPHGGALTQEDYPLGQLIALTDPSIALPN
Ga0307469_1000277511	3300031720	Hardwood Forest Soil	MVAIFDEVYRVVAVESQRLTIQGIASGKIMTIVNTVPEFALTQEDYPLGQLIALTDPSMGLPN
Ga0307469_100156152	3300031720	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVTTAPESPLTQEDYPLGQLIALTDPSTALQN
Ga0307469_100613074	3300031720	Hardwood Forest Soil	MAIFDQTYRVVAVESQCLTIQGILSGEIMTIVNTAPDSPLTQEDHPLGQLIALTDPSTTLQT
Ga0307469_100862771	3300031720	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVKTAPDTPLTQEDYPLGQLIALTDPSTALQN
Ga0307469_100883473	3300031720	Hardwood Forest Soil	MAIFDESYRVVAVESQRLTIQGVSSGEIMTIANTAPESPLTQEDYPLGQLIALTDPSTALQN
Ga0307469_106925581	3300031720	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGVASGEIMTIVNTAPESPLTQEDYPLGQLISLTDPTTDLPN
Ga0302321_1010009931	3300031726	Fen	RRIQATTRRLLMAIFDEPYIVVAVERQHLTLQGILSGKIVMIANTPHGGALTQEDYPLGQLIALTDPSIALPN
Ga0307475_107213572	3300031754	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGVATGEVMTIVNTAPGTPLTQEEYPLGQLIALTDPTTELQN
Ga0307475_108081321	3300031754	Hardwood Forest Soil	MAIFDESYRVVAVESQRLTIQGVSSGEIMTIVNTAPESPLTQEDYPLGQLIALTDPSTALQN
Ga0307475_108379781	3300031754	Hardwood Forest Soil	MAILDETHRVAGLESQRLTIQGILSGEIMTIVNTAPGCPLTPEEYPLGQLIALTDPSTAFHN
Ga0307475_113041041	3300031754	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGIASGEIMTIVSTAPESPLTQEDYPLGQLIALTDPSTALQN
Ga0307473_104899091	3300031820	Hardwood Forest Soil	MAIFDENYRVVAVESQRLTIQGVLSGEIMTIVNPAPESPLTQEDYPLGQLIALTDPSTALQN
Ga0307478_100230116	3300031823	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGVATGKVMTIVNTVSGTPLTPEDYPLGQLIALTDPTTEIQN
Ga0302322_1025085881	3300031902	Fen	MAIFDEPFIVVAVERQHLTLQGILSGEIVMIATTPHGGALTQEDYPLGQLIA
Ga0307479_100138395	3300031962	Hardwood Forest Soil	MAIFDETYRVVAVESQRLTIQGILSGEIMTIVNTAPESPLTQKDYPLGQLIALTDPSTALQN
Ga0307479_115186071	3300031962	Hardwood Forest Soil	MAILDETHRVAGLESQRLTIQGILSSQIMTIVNTAPGCPLTPEEYPLGQLIALTDPSTAFHN
Ga0307479_120621792	3300031962	Hardwood Forest Soil	VVYTSNASLRRTTIAIFDETYRVVAVESQRLTIQGVATGEVMTIVNTAPGTPLTQEEYPLGQLIALTDPTTEIQN
Ga0307471_1035529532	3300032180	Hardwood Forest Soil	MMAIFDQTYRVVAVESQCLTIQGILSGEIMTIVNTAPDSPLTQEDHPLGQLIVLTDPSTTLQT
Ga0335085_100963693	3300032770	Soil	MGIFDENYRVVAVERQRLTIQGVISGEVLTIVNAEPEVYLTQDYPLGKLIALTDPSTAVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083105

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences