Metagenome / Metatranscriptome Family F083142

Basic Information
Family ID	F083142
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	85 residues
Representative Sequence	VAGLNDDDLLVEIAQQSPAIKAQYADNLRRVNQYIQDAKSVVAANPDDDEARRSLMEAYQQKAMLFELAMDRSLP
Number of Associated Samples	103
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.68 %
% of genes near scaffold ends (potentially truncated)	92.92 %
% of genes from short scaffolds (< 2000 bps)	92.04 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Most Common Taxonomy
Group	Bacteria (89.381 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.814 % of family members)
Environment Ontology (ENVO)	Unclassified (19.469 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.717 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.28% β-sheet: 0.00% Coil/Unstructured: 42.72%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
a.13.1.1: RAP domain	d2fcwa1	2fcw	0.79884
a.24.14.1: FAT domain of focal adhesion kinase	d1k04a_	1k04	0.78322
f.5.1.0: automated matches	d1yc9a_	1yc9	0.75905
f.13.1.1: Bacteriorhodopsin-like	d1xioa_	1xio	0.74975
f.13.1.0: automated matches	d6xl3a_	6xl3	0.73185

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF13349	DUF4097	15.93
PF01202	SKI	6.19
PF13345	Obsolete Pfam Family	5.31
PF08281	Sigma70_r4_2	1.77
PF01594	AI-2E_transport	0.88
PF07690	MFS_1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.88

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.38 %
Unclassified	root	N/A	10.62 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.38 %
Unclassified	root	N/A	10.62 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.38 %
Unclassified	root	N/A	10.62 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.44 %
Unclassified	root	N/A	10.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.62 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.62 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	10.62 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104195323	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300001151\|JGI12713J13577_1012571	Not Available	733	Open in IMG/M
3300001686\|C688J18823_10375926	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300001867\|JGI12627J18819_10083671	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300002568\|C688J35102_117803406	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300004080\|Ga0062385_10289008	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300004091\|Ga0062387_100463874	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300004091\|Ga0062387_101175645	All Organisms → cellular organisms → Bacteria → Acidobacteria	599	Open in IMG/M
3300004603\|Ga0068918_1175417	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300004607\|Ga0068948_1274346	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300004609\|Ga0068958_1254041	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300004614\|Ga0068956_1294913	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300005436\|Ga0070713_100710087	All Organisms → cellular organisms → Bacteria → Acidobacteria	960	Open in IMG/M
3300005436\|Ga0070713_101375923	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300005437\|Ga0070710_11117625	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300005468\|Ga0070707_101645006	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005533\|Ga0070734_10396060	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300005542\|Ga0070732_10089827	All Organisms → cellular organisms → Bacteria → Acidobacteria	1803	Open in IMG/M
3300005542\|Ga0070732_10250911	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300005575\|Ga0066702_10826035	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300005610\|Ga0070763_10101673	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005712\|Ga0070764_10037498	All Organisms → cellular organisms → Bacteria → Acidobacteria	2459	Open in IMG/M
3300005879\|Ga0075295_1005837	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300006173\|Ga0070716_100711644	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300006175\|Ga0070712_101775604	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300006176\|Ga0070765_100022284	All Organisms → cellular organisms → Bacteria → Acidobacteria	4766	Open in IMG/M
3300007788\|Ga0099795_10450670	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300009665\|Ga0116135_1326034	Not Available	611	Open in IMG/M
3300009665\|Ga0116135_1469688	Not Available	518	Open in IMG/M
3300009762\|Ga0116130_1140140	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300010048\|Ga0126373_10150337	All Organisms → cellular organisms → Bacteria → Acidobacteria	2212	Open in IMG/M
3300010366\|Ga0126379_10168355	All Organisms → cellular organisms → Bacteria → Acidobacteria	2068	Open in IMG/M
3300010371\|Ga0134125_13070129	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300010379\|Ga0136449_104265288	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300011075\|Ga0138555_1112966	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300011086\|Ga0138564_1009319	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300011120\|Ga0150983_14329557	All Organisms → cellular organisms → Bacteria → Acidobacteria	1786	Open in IMG/M
3300012212\|Ga0150985_122971937	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300012351\|Ga0137386_10669965	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300012469\|Ga0150984_118276529	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300012987\|Ga0164307_10710689	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300013307\|Ga0157372_10982102	All Organisms → cellular organisms → Bacteria → Acidobacteria	978	Open in IMG/M
3300015193\|Ga0167668_1084007	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300015262\|Ga0182007_10050284	All Organisms → cellular organisms → Bacteria → Acidobacteria	1376	Open in IMG/M
3300016270\|Ga0182036_11581213	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
3300016294\|Ga0182041_11033280	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300016294\|Ga0182041_11810248	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300017942\|Ga0187808_10465354	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300017961\|Ga0187778_10836278	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300017972\|Ga0187781_10671503	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300018038\|Ga0187855_10539140	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300018040\|Ga0187862_10148651	All Organisms → cellular organisms → Bacteria → Acidobacteria	1580	Open in IMG/M
3300018090\|Ga0187770_10571231	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300018090\|Ga0187770_11807926	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300019188\|Ga0184599_155238	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300019273\|Ga0187794_1131826	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300019275\|Ga0187798_1743420	Not Available	676	Open in IMG/M
3300019284\|Ga0187797_1287157	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300020150\|Ga0187768_1083244	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300021168\|Ga0210406_10157919	All Organisms → cellular organisms → Bacteria → Acidobacteria	1901	Open in IMG/M
3300021171\|Ga0210405_10984067	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300021178\|Ga0210408_10038338	All Organisms → cellular organisms → Bacteria → Acidobacteria	3769	Open in IMG/M
3300021181\|Ga0210388_10075407	All Organisms → cellular organisms → Bacteria	2852	Open in IMG/M
3300021181\|Ga0210388_11534251	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300021402\|Ga0210385_10373405	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300021433\|Ga0210391_11138953	Not Available	605	Open in IMG/M
3300021477\|Ga0210398_10535616	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300021477\|Ga0210398_11424111	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300021559\|Ga0210409_10919949	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300021559\|Ga0210409_10991691	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300022510\|Ga0242652_1025873	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300022525\|Ga0242656_1139496	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300022531\|Ga0242660_1008962	All Organisms → cellular organisms → Bacteria → Acidobacteria	1656	Open in IMG/M
3300022714\|Ga0242671_1011608	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300022716\|Ga0242673_1080886	Not Available	599	Open in IMG/M
3300022722\|Ga0242657_1202177	Not Available	550	Open in IMG/M
3300025928\|Ga0207700_10618860	All Organisms → cellular organisms → Bacteria → Acidobacteria	964	Open in IMG/M
3300026014\|Ga0208776_1017219	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300026322\|Ga0209687_1059436	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300026552\|Ga0209577_10411160	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300027729\|Ga0209248_10078487	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300027795\|Ga0209139_10198423	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300027824\|Ga0209040_10238349	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300027855\|Ga0209693_10071791	All Organisms → cellular organisms → Bacteria	1708	Open in IMG/M
3300027911\|Ga0209698_10329503	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300028013\|Ga0265350_101868	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300028023\|Ga0265357_1037596	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300028036\|Ga0265355_1020484	Not Available	571	Open in IMG/M
3300028776\|Ga0302303_10297475	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300028780\|Ga0302225_10114181	All Organisms → cellular organisms → Bacteria → Acidobacteria	1317	Open in IMG/M
3300028798\|Ga0302222_10317546	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300028800\|Ga0265338_10379048	All Organisms → cellular organisms → Bacteria → Acidobacteria	1012	Open in IMG/M
3300029910\|Ga0311369_10926631	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300030509\|Ga0302183_10275832	Not Available	651	Open in IMG/M
3300030520\|Ga0311372_11156275	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300030520\|Ga0311372_12702068	Not Available	549	Open in IMG/M
3300030617\|Ga0311356_10862857	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300030741\|Ga0265459_10418873	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300030885\|Ga0265743_110571	Not Available	636	Open in IMG/M
3300031198\|Ga0307500_10115126	All Organisms → cellular organisms → Bacteria	736	Open in IMG/M
3300031249\|Ga0265339_10266261	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300031344\|Ga0265316_10284658	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300031708\|Ga0310686_105797577	All Organisms → cellular organisms → Bacteria → Acidobacteria	517	Open in IMG/M
3300031715\|Ga0307476_10648610	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300031716\|Ga0310813_10789965	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300032001\|Ga0306922_11410532	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300032035\|Ga0310911_10748213	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300032770\|Ga0335085_10778769	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300032828\|Ga0335080_10138461	All Organisms → cellular organisms → Bacteria → Acidobacteria	2697	Open in IMG/M
3300032892\|Ga0335081_11047803	All Organisms → cellular organisms → Bacteria → Acidobacteria	945	Open in IMG/M
3300032898\|Ga0335072_10005347	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	18919	Open in IMG/M
3300033134\|Ga0335073_11954742	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.04%
Host-Associated	Host-Associated	7.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.53%
Aquatic	Environmental → Aquatic	11.50%
Plants	Host-Associated → Plants	7.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.45%
Freshwater	Environmental → Aquatic → Freshwater	10.62%
Peat	Environmental → Terrestrial → Peat	7.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.08%
Sediment	Environmental → Aquatic → Sediment	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.02%
Loam	Environmental → Terrestrial → Soil → Loam	14.16%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.24%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.08%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.08%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.19%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.31%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	4.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.54%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.65%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.77%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004603	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004607	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004609	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004614	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 48 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005879	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011075	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011086	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019188	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019273	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026014	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028013	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE2	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028776	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300030863	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030885	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1041953231	3300000364	Soil	DLLDAIAQQTPAMKAEYTDNLQRVNEYIKDAKTDVDADPNDQEARRSLMEAYQEKAMLFELALDRSLP*
JGI12713J13577_10125712	3300001151	Forest Soil	AAANTNLVVPNLAGLNDDDLMQEIQNQSPELRAQYVDNLRSANEYIRDAQSAVDANPNDEESRRSLLEAYQQKAMLFEMAMDR*
C688J18823_103759261	3300001686	Soil	KVVNSDLVSRPAVSDASLDASIAGLNDDDLLAEVAQQGPALQAQYSENLRHVNEYIQDAKSTLAANPXDEDARRTLMEAYQEKAMLFELALDRSLQ*
JGI12627J18819_100836713	3300001867	Forest Soil	VAATAPDLEIAGLNDADLLQEVAEQSPALRIQYEDNLRRVNEYIQDAKGVVAANPSDEEARRSLMEAYQQKAMLFELAMDRSLP*
C688J35102_1178034061	3300002568	Soil	TLGIALRPHAPSSKIVNSELVSRPAVSDASLDASIAGLNDDDLLAEVAQQGPALQAQYSENLRHVNEYIQDAKSTLAANPNDEDARRTLMEAYQEKAMLFELALDRSLQ*
Ga0062385_102890081	3300004080	Bog Forest Soil	PNLAGVNLGGLNDDDLLQEIKNQAPELRAQYVDNLRNANEYIRDAQSSVDANPNDEESRRSLLEAYQQKAMLFEMAMDRSLP*
Ga0062387_1004638742	3300004091	Bog Forest Soil	DDDLLQEIKNQAPELRAQYVDNLRNANEYIRDAQSSVDANPNDEESRRSLLEAYQQKAMLFEMAMDRSLP*
Ga0062387_1011756451	3300004091	Bog Forest Soil	ADLLQEVAQLSPALQAQYTDNLRHVNQYIQDEKSVVAADPTDEEARRSLMEAYQEKAMLFELAMDRSLP*
Ga0068918_11754171	3300004603	Peatlands Soil	TAPAAAVSDPEMAGLNDADLLQEVAQLSPAVQAQYADNLRHVNQYIQDEKSVVAADPTDEEARRSLMEAYQEKAMLFELAMDRSLP*
Ga0068948_12743461	3300004607	Peatlands Soil	LSSPNLPNTNLTTAGLTGLNDDDLLQEIQNQTPAMRAQYVDNLRLANDYIRDAQNLVATNPNDEESRRSLLEAYQQKAMLFEMAMDRSLP*
Ga0068958_12540412	3300004609	Peatlands Soil	AGLNDADLLQEVAQLSPAVQAQYADNLRHVNQYIQDEKSVVAADPTDEEARRSLMEAYQEKAMLFELAMDRSLP*
Ga0068956_12949132	3300004614	Peatlands Soil	GLNDADLLQEVAQLSPAVQAQYADNLRHVNQYIQDEKSVVAADPTDEEARRSLMEAYQEKAMLFELAMDRSLP*
Ga0070713_1007100871	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	YTGTHTDRTDQSQVAHQEPVSEAAIVGLNDADLLDAIAQQTPAMKAEYTDNLQRVNEYIKDAKTDVDADPNDQEARRSLMEAYQEKAMLFELALDRSLP*
Ga0070713_1013759231	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	IYVRQHTGTKPIADDRPRLAPQEQVSESMTAGLNDQDLIDAIAQQTPAMKAEYTDNLQRVNDYIKDAKSTVDADPSDEEARRSLMEAYQQKAMLFELALDRSLP*
Ga0070710_111176251	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	KPIADDRPRLAPQEQVSESMTAGLNDQDLIDAIAQQTPAMKAEYTDNLQRVNDYIKDAKSTVDADPSDEEARRSLMEAYQQKAMLFELALDRSLP*
Ga0070707_1016450061	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AGLNDDDLLQEIAQQSPALKAQYADSLRRVNQYIQDAKSVVAADPNDDEARRSLMEAYQQKALLFELAMDRSLP*
Ga0070734_103960602	3300005533	Surface Soil	GLNDDDLLQEVAEQAPALRAQYSDNLRTVNQYIRDAKSSVDANPNDEDARRSLMDAYQEKAMLFELALDRSLQ*
Ga0070732_100898271	3300005542	Surface Soil	NEYATGSTASGVESEAAVAGLNDDDLIQEIAQQSPAQQAQYTENLRRVNQYILDAKSSVAADPNDEDAHRSLMEAYQQKSMLFELALDRSLP*
Ga0070732_102509112	3300005542	Surface Soil	DDLLQEIAQQSPALKAQYADNLRRVNQYIQDARSVVADNPNDDEARRSLMEAYQQKAMLFELAMDRSLP*
Ga0066702_108260352	3300005575	Soil	VVSTAAADVQVAGLNDDDLLQEVSQQAPALREQYADNLRRVNAYIEDAKTIVAANPDDEDARRSLMDAYQEKAMLFELALDRSLP*
Ga0070763_101016731	3300005610	Soil	IAPGRTATRPAGTVAGLKIADPNMIVPNLAGLNDDDLLLEIQNQSPEMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR*
Ga0070764_100374984	3300005712	Soil	GLKIADPNMIVPNLAGLNDDDLLLEIQNQSPEMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR*
Ga0075295_10058372	3300005879	Rice Paddy Soil	PKVVHSELASRPAVADASLDSSIAGLNDDDLLAEVAQQGPALQAQYTENLRHVNEYIQDAKTSVAANPNDEDARRALMEAYQEKAMLFELALDRSLP*
Ga0070716_1007116442	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	QHTGAKPIADDRPRLAPQEQVSESMTAGLNDQDLIDAIAQQTPAMKAEYTDNLQRVNDYIKDAKSTVDADPSDEEARRSLMEAYQQKAMLFELALDRSLP*
Ga0070712_1017756041	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DAAVAGLNDDDLIQEIAQQSPAQQAQYTENLRRVNQYILDAKSSVAADPNDEDAHRSLMEAYQQKAMLFELALDRSLP*
Ga0070765_1000222843	3300006176	Soil	MNDGNDGLKDDDLLKEVATLSPAMQLQYTDNLHRANEYIRDAKSVVDQYPNDAEARRSLLEAYQQKAMLFELAMDRSLP*
Ga0099795_104506701	3300007788	Vadose Zone Soil	NDDELLQAVSDQPPVAQAQYQDNLRRVNQYIQDAKMNVETSPDDEDARRSLMEAYQQKAMLFEMTMDRSLP*
Ga0116135_13260342	3300009665	Peatland	AAQTVAARNVTNSNLAGLNDDDLLQEIQNQSPELRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDRSLP*
Ga0116135_14696881	3300009665	Peatland	IAPASATAPAAANAKLAAPNLAGLNDDDLLQEIQNQSPAMRAQYADNLRNANDYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR*
Ga0116130_11401402	3300009762	Peatland	VSDAAIAGLNDEDLLQEAAKQSPAMQAQYTDNLRRVNQYIQDAKGVVAADPNDEDARRSLLEAYQEKAMLFELAMDRSLP*
Ga0126373_101503372	3300010048	Tropical Forest Soil	LNASLKDDDLLQGISQQSPALQATYTDNLRRVNQYIRDAKSTVDADPSDQDARRSLMEAYQQKAMLFELALDRSLP*
Ga0126379_101683551	3300010366	Tropical Forest Soil	LNASLKDDDLLQGISQQSPALKATYTDNLRRVNEYIHDAKSTVDADPSDEDARRSLMEAYQQKAMLFELALDRSLP*
Ga0134125_130701291	3300010371	Terrestrial Soil	NSELVSRPGVSNASLDASIAGLNDDDLLAEVAQQGPALQAQYSENLRHVNEYIQDAKSTLAANPNDEDARRTLMEAYQEKAMLFELALDRSLQ*
Ga0136449_1042652882	3300010379	Peatlands Soil	GLNDDDLLLEVAQQSPAIKAQYQDNLRRVNEYIQDAKSVVANNPNDDEARRSLMEAYQQKALLFELAMDRSLP*
Ga0138555_11129661	3300011075	Peatlands Soil	IATNAADVEIAGLNDDDLRQELAQQTPEIRAQYEDNLRRVNEYIQDAKDNVAADPNDEDAHRSLMEAYQEKSMLFELAMDRSLP*
Ga0138564_10093192	3300011086	Peatlands Soil	VVSDPEMAGLNDADLLQEVAQLSPAIQAQYTDNLRHVNQYIQDEKSVVAADPTDEEARRSLMEAYQEKAMLFELAMDRSLP*
Ga0150983_143295571	3300011120	Forest Soil	TAASDVAVAGLNDDDLLVEIAQQSPAIKAQYADNLRRVNQYIQDAKSVVAANPDDDEARRSLMEAYQQKAMLFELAMDRSLP*
Ga0150985_1229719371	3300012212	Avena Fatua Rhizosphere	EPAAANNSGAELAIAGLNDNDLIQEAPALGAEYSDNLRGVNEYIQDAKNNVAAHPDDEDARRSLMEAYQEKAMLFELALDRSLP*
Ga0137386_106699652	3300012351	Vadose Zone Soil	SDAAVAGLDDDDLLQEVAQLSPAMQTQYTDSLRHVNEYIQDAKSAIAANPTDEEARRSLMDAYQQKAMLFELAMDRSLP*
Ga0150984_1182765291	3300012469	Avena Fatua Rhizosphere	DLNDLIQEAPALGAEYSDNLRGVNEYIQDAKNNVAAHPEDEDARRSLMEAYQEKAMLFELALDRSLP*
Ga0164307_107106891	3300012987	Soil	DAALEASVAGLNDNDLLAELAEQAPTLQAQYTENLRNVNDYIRDAKHSLEANPNDDEARRALMDAYQQKAMLFELALDRSLP*
Ga0157372_109821023	3300013307	Corn Rhizosphere	LVSRPAVADASLDASIAGLNDDDLLAEVAQQGPALQAQYSENLRHVNEYIQDAKSTLAANPNDEDARRTLMEAYQEKAMLFELALDRSLQ*
Ga0167668_10840071	3300015193	Glacier Forefield Soil	DTHPLPAPAANVAVADAGMNDADLLQEVADRAPFMKMQYEDNLRRVNEYILDAQSTVDANPNDAEARRSLMDAYQQKAMLFEMAMDRSLP*
Ga0182007_100502842	3300015262	Rhizosphere	VNSELVSRPAVSDASLDASIAGLDDDDLLAEVAQQGPALQAQYSENLRHVNEYIQDAKSTLAANPNDEDARRTLMEAYQEKAMLFELALDRSLQ*
Ga0182036_115812132	3300016270	Soil	YMAKTARAPEVDAAIVGLNDDDLLQEIGQQSPALRAEYADNLRRVNQYIVDAKNIVAADPNDDEARRSLMEAYQEKAMLFELALDRSLQ
Ga0182041_110332802	3300016294	Soil	DAAIGLNDDDLLQEIGQQSPALQAEYADNLRRVNQYIVDAKNIVAADPNDDEARRSLMEAYQEKAMLFELALDRSLK
Ga0182041_118102482	3300016294	Soil	DDDLLQEVAQQSPALQEQYADNLRRVNLYIQDAKNSVDADPTDEEARRSLMEAYQEKAMLFELALDRSLQ
Ga0187808_104653542	3300017942	Freshwater Sediment	RNENPSPALSEPGSDLAAGLNDEDLMQEVEQQPAALQAEYSDSLRRANQYIEDAKNVVAADPNDQEARRSLMEAYQQKAMLFEFALDRSLP
Ga0187778_108362781	3300017961	Tropical Peatland	MQLAENTAQPAVSAVVPDLQLAGLNDNDLLEEVSQQAPALRAQYEDNLRRVNQYIEDAKSDLAANPNDAEARRSLLAAYQQKAMLFELALDRSLP
Ga0187781_106715032	3300017972	Tropical Peatland	SDPEMAGLNDDELLSEVSEQAPALRAQYEEDLRRANQFIQDAKSDVAANPNDGEARRALLAAYQQKAMLFELALDRSLP
Ga0187855_105391402	3300018038	Peatland	RRHSQTEQIASNNVHPAEVVSDAAIAGLNDEDLLQEISEQTPALKAQYADNLRRVNEYIEDAKSSVAANPNDEDARRSLMDAYQEKAMLFELALDRSLP
Ga0187862_101486513	3300018040	Peatland	VSSEVSDAAIAGLNDEDLLQEAAKQSPAMQAQYTDNLRRVNQYIQDAKGVVAADPNDEDARRSLLEAYQEKAMLFELAMDRSLP
Ga0187770_105712312	3300018090	Tropical Peatland	EPVSDLAVAGLNDDDLLQEIAAQSPALKTQYQDELRRVNEYIRDAQGSVAANPNDAEARRSLMEAYQEKAMLFELALDRSLP
Ga0187770_118079261	3300018090	Tropical Peatland	QEIVSDAAIAGLNDEDLLQEVSDEAPALRAQYEDNLRRVNQFIADARSDVASNPNDEDARRSLLEAYQQKAMLFELALDRSLQ
Ga0184599_1552382	3300019188	Soil	DTVPVAAASDLAVAGLNDDDLLLELAQQSPAIKAQYADNLRRVNEYIRDAKSVVAANPNDDEARRSLMEAYQQKALLFELAMDRSLP
Ga0187794_11318261	3300019273	Peatland	QQSLPAQLAKHAAQPAVAVPSADVELAGLDDADLLQEIAQQTPALKAQYEENLRRVNEYIRDAEIDVADNPNDDEARRSLMEAYQEKSMLFELALDRSLP
Ga0187798_17434201	3300019275	Peatland	TAQPAVAASVPSLQVAGLNDADLLEEISQQAPALKAQYENDLRVANQYIQDAASDVAANPNDAEARRSLLAAYQQKAMLFELALDRSLP
Ga0187797_12871572	3300019284	Peatland	ENTAPPAVSAVVPDLEIAGLNDNDLLEEISKQAPALRAQYEDNLRHVNQYIEDAKSDLAANPNDAEAHRSLLAAYQQKAMLFELALDRSLP
Ga0187768_10832442	3300020150	Tropical Peatland	RYVRQQSLPAQLAKHAAQPAVATPAADVELAGLKDADLLQEIAQQTPALKAQYEENLRRVNEYIRDAERDVADNPNDDEARRSLMEAYQEKSMLFELALDRSLP
Ga0210406_101579191	3300021168	Soil	TQPTVVSDAAVAGLNDDDLLQEVARQSPALQEEYADHLRHVNQYIQDAKTVVAADPNDEDARRSLMEAYQEKAMLFELALDRSLQ
Ga0210405_109840671	3300021171	Soil	LLQGISQQSPALQAQYTDNLRRVNEYIQDEKSSVAADPNDEDARSSLMEAYQQKAMLFQLALDRSLQ
Ga0210408_100383381	3300021178	Soil	NIETTPVSNLATAGLNDDDLLQEVSNQTPGMRAEYADDLRRANEYIQDAENDVKANPNDQESRRSLMEAYEQKAMLFEMAMDRSLP
Ga0210388_100754073	3300021181	Soil	MNDGNDGLKDDDLLKEVATLSPAMQLQYTDNLHRANEYIRDAKSVVDQYPNDAEARRSLLEAYQQKAMLFELAMDRSLP
Ga0210388_115342511	3300021181	Soil	ARDTVPVAAASDLAEAGLNDDDLLLELAQQSPAIKAQYADNLRRVNEYIRDAQSVVAANPNDDEARRSLMEAYQQKALLFELAMDRSLP
Ga0210385_103734051	3300021402	Soil	SGPLTASLVKPPVSDTVSDAAVAGLNDDDLLQEVSDQTPALRAQYADNLRSANEFIQDAKNDVAANPNDEDARRSLLAAYQQKAMLFDLAMDRSLQ
Ga0210391_111389532	3300021433	Soil	APAAANTNLVVPNLAGLNDDDLMQEIQNQSPELRAQYVDNLRSANEYIRDAQSAVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0210398_105356161	3300021477	Soil	EVAAMNDGNDGLKDDDLLKEVATLSPAMQLQYTDNLHRANEYIRDAKSVVDQYPNDAEARRSLLEAYQQKAMLFELAMDRSLP
Ga0210398_114241112	3300021477	Soil	VAGLNDDDLLVEIAQQSPAIKAQYADNLRRVNQYIQDAKSVVAANPDDDEARRSLMEAYQQKAMLFELAMDRSLP
Ga0210409_109199492	3300021559	Soil	VSDGAIAGLNDSDLLLEVAQLSPAMQAQYTDNLRHVNQYIQDAKGEVAAHPNDDEARRSLMEAYQEKAMLFELAMDRSLP
Ga0210409_109916912	3300021559	Soil	EMAGLNDDDLLQEIGQATPALRAQYEDNLRRVNEYIRDAQSNVADNPNDDEARRSLMAAYQEKAMLFELAMDRSLP
Ga0242652_10258732	3300022510	Soil	ATIAGLNDEDLLQGISQQSPALQAQYTDNLRRVNEYIQDEKSSVAADPNDEDARSSLMEAYQQKAMLFQLALDRSLQ
Ga0242656_11394962	3300022525	Soil	DLKLSNPNLPNAGLTNAGLTGLNDDELLREIQSQTPAMQAQYVDNLRRANLYIRDAQNFVATNPNDEESRRSLLEAYQQKAMLFEMAMDRSLP
Ga0242660_10089621	3300022531	Soil	DSDLLLEVAQLSPAMQAQYTDNLRHVNQYIQDAKGEVAAHPNDDEARRSLMEAYQEKAMLFELAMDRSLP
Ga0242671_10116081	3300022714	Soil	AQHIAPSTTRTPAAANTNLVVPNLAGLNDDDLMQEIQNQSPEMRAQYVDNLRSANEYIRDAQSAVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0242673_10808862	3300022716	Soil	AANTNLVVPNLAGLNDDDLMQEIQNQSPELRAQYVDNLRSANEYIRDAQSAVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0242657_12021771	3300022722	Soil	RPAGTVAGLKIADPNMIVPNLAGLNDDDLLLEIQNQSPEMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0207700_106188601	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	YTGTHTDRTDQSQVAHQEPVSEAAIVGLNDADLLDAIAQQTPAMKAEYTDNLQRVNEYIKDAKTDVDADPNDQEARRSLMEAYQEKAMLFELALDRSLP
Ga0208776_10172192	3300026014	Rice Paddy Soil	HSELASRPAVADASLDSSIAGLNDDDLLAEVAQQGPALQAQYTENLRHVNEYIQDAKTSVAANPNDEDARRALMEAYQEKAMLFELALDRSLP
Ga0209687_10594361	3300026322	Soil	HEVATLNSASQGATEASLESSIAGLNDSDLITELEQQAPALQAQYSENLRHVNEYIRDAKNSVAANPDDEDARRALMDAYQEKAMLFELVLDRSLP
Ga0209577_104111601	3300026552	Soil	SRNLAGIDEATHPALNQPSPDVAIAGLNDDDLLQEVAQQTPALQAQYTENLRHVNEYIQDAKNNVAANPNDEDARHALMDAYQEKAMLFELALDRSLP
Ga0209248_100784872	3300027729	Bog Forest Soil	TNPNLAGVNLGGLNDDDLLQEIKNQAPELRAQYVDNLRNANEYIRDAQSSVDANPNDEESRRSLLEAYQQKAMLFEMAMDRSLP
Ga0209139_101984232	3300027795	Bog Forest Soil	DGAVAGQKAAGLNDDDLLQEVAALTPAARAQYADNLRRVNDYIRDAKNNADAYPDDEEARRSLLEAYQEKSMLFELAMDHPSQ
Ga0209040_102383492	3300027824	Bog Forest Soil	QEVSTQAPAMQAQYAENLRRVNEYIQDAKGFADANPNDDEARRSLLEAYQQKAMLFELAMDRSLP
Ga0209693_100717913	3300027855	Soil	IAPGRTATRPAGTVAGLKIADPNMIVPNLAGLNDDDLLLEIQNQSPEMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0209698_103295032	3300027911	Watersheds	TTIVSDAAAGLNDDDLLQEVAQQSPALQAQYADNLRHVNQYIQDAKNTVAADPYDEEARRSLMEAYQEKAMLFELALDRSLQ
Ga0265350_1018682	3300028013	Soil	LVVPNLAGLNDDDLLQEIQNQSPAMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0265357_10375962	3300028023	Rhizosphere	LNDDDLLLELAQQSPAVKAQYTDNLRRVNEYIVDAKSVVAANPDDEEAHRSLMEAYQQKAMLFELAMDRSLP
Ga0265355_10204842	3300028036	Rhizosphere	LAQHIAPVATTTPAAANANLVVPNLAGLNDDDLLQEIQNQSPAMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0302303_102974751	3300028776	Palsa	NDDDLMQEIRNQSPAMRAQYVDNLRNANEYIRDAQSVVDANPNDEESRRTLLEAYQQKAMLFEMAMDRSLP
Ga0302225_101141811	3300028780	Palsa	PAAGGDAARNVTNPNLAGLNDDDLMQEIRNQSPAMRAQYVDNLRNANEYIRDAQSVVDANPNDEESRRTLLEAYQQKAMLFEMAMDRSLP
Ga0302222_103175461	3300028798	Palsa	ASTPPGVYDSQADMQLAGLNDNDLMEEVAQQPPALKAQYTDNLRRVNESIQDAKGVVAAHPNDEDAHRSLMEAYQQKAMLFELALDRSMNDRSMNNRSNDRSMQ
Ga0265338_103790481	3300028800	Rhizosphere	IASNNVHPAEVVSDAAIAGLNDEDLLQEISEQTPALKAQYADNLRRVNEYIEDAKSSVAANPNDEDARRSLMDAYQEKAMLFELALDRSLP
Ga0311369_109266312	3300029910	Palsa	AAGGDAARNVTNPNLAGLNDDDLMQEIRNQSPAMRAQYVDNLRNANEYIRDAQSVVDANPNDEESRRTLLEAYQQKAMLFEMAMDRSLP
Ga0302183_102758322	3300030509	Palsa	IAPASATAPAAANAKLAAPNLAGLNDDDLLQEIQNQSPAMRAQYADNLRNANDYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0311372_111562752	3300030520	Palsa	GLNDDDLMQEIRNQSPAMRAQYVDNLRNANEYIRDAQSVVDANPNDEESRRTLLEAYQQKAMLFEMAMDRSLP
Ga0311372_127020681	3300030520	Palsa	PAAANAKLAAPNLAGLNDDDLLQEIQNQSPAMRAQYADNLRNANDYIRDAQSVVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0311356_108628572	3300030617	Palsa	LNDDDLMQEIRNQSPAMRAQYVDNLRNANEYIRDAQSVVDANPNDEESRRTLLEAYQQKAMLFEMAMDRSLP
Ga0265459_104188731	3300030741	Soil	DGNDGLKDDDLLKEVATLSPAMQLQYTDNLHRANEYIRDAKSVVDQYPNDAEARRSLLEAYQQKAMLFELAMDRSLP
Ga0265766_10022221	3300030863	Soil	GLNDDDLLQEIQNQSPAMRAQYVDNLRSANEYIRDAQSVVDANPNDEESRRSLLEAY
Ga0265743_1105711	3300030885	Soil	LNDDDLMQEIQNQSPEMRAQYVDNLRSANEYIRDAQSAVDANPNDEESRRSLLEAYQQKAMLFEMAMDR
Ga0307500_101151262	3300031198	Soil	AAQPTIVSDAAIAGLNDDDLLQEVAQQSPALQEQYADNLRRVNQYIQDAKNIVAAEPDDEEARRSLMEAYQEKAMLFELALDRSLQ
Ga0265339_102662612	3300031249	Rhizosphere	RHSQTEQIASNNVHPAEVVSDAAIAGLNDEDLLQEISEQTPALKAQYADNLRRVNEYIEDAKSSVAANPNDEDARRSLMDAYQEKAMLFELALDRSLP
Ga0265316_102846582	3300031344	Rhizosphere	SDVALAGLNDDDLLQEVSEQSPAMRAQYADNLRRVNEYIHDAKSIVDADPNDPEARRALDEAYQEKAMLFELAMDRSLP
Ga0310686_1057975771	3300031708	Soil	SNPNLPNSNLINPNLINPGLTGLNDDDLLQEIQNQTPAMRAQYVDNLRLANDYIRDAQNLVATNPNDEESRRSLLEAYQQKSMLFEMAMDRSLP
Ga0307476_106486101	3300031715	Hardwood Forest Soil	ELLQEVSNQSPAIRAQYTDNLRRVNDYISDAQRVVDADPYDQEARRSLMEAYQQKSMLFELAVDRSLP
Ga0310813_107899652	3300031716	Soil	AAGSTASGAEPDAAVAGLNDDDLIQEIAQQSPAQQAQYTENLRRVNQYILDAKSSVAADPNDEDAHRSLMEAYQQKSMLFELALDRSLP
Ga0306922_114105321	3300032001	Soil	VRAPEVDAAIVGLNDDDLLQEIGQQSPALQAEYADNLRRVNQYIVDAKNIVAADPNDDEARRSLMEAYQEKAMLFELALDRSLQ
Ga0310911_107482132	3300032035	Soil	IVTSPVEKVPDVTAGLNDDDLLQEVAQQSPALQEQYADNLRRVNLYIQDAKNSVDADPTDEEARRSLMEAYQEKAMLFELALDRSLQ
Ga0335085_107787692	3300032770	Soil	NDDDLLQEVAQQTPALQAQYTDNLRRVNQYIADAKSTVAANPNDEDARRSLMEAYQEKAMLFELALDRSLP
Ga0335080_101384611	3300032828	Soil	SQSPPEGNNVSQPVVPDAIVAGLNDDDLLQEVAELNPKLRQEYADNLKHVNEYIQDAKSSVDADPNDEDARRSLMDAYQEKAMLFELAMDRPVQ
Ga0335081_110478031	3300032892	Soil	VTVGIYVRQRSQAPPEGNNVSQPVVSDAMVGGLNDDDLLQEVAELNPKLRQEYADNLKHVNEYIQDAKSSVDADPNDEDARRSLMDAYQEKAMLFELAMDRPVQ
Ga0335072_100053478	3300032898	Soil	MNQAVVAQPVSEVALAGLNDDDLLQEISDQGPDVKAEYEDNLRRVNESIQDAKDFVAANPNDEDARLSLLEAYQQKAMLFELAMDRSLP
Ga0335073_119547422	3300033134	Soil	DSHLAGLNDSDLMQEVSTQSPEVQAQYEENLRHVNQYIQDAVRSVQANPGDEEARRSLDEAWQEKAMLFDLAMDRSLQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083142

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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