Metagenome / Metatranscriptome Family F083159

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083159
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	48 residues
Representative Sequence	GSFHTLRFGEKKPFTGSFHNGQLDLFYYRDPGLKAGKSFPLWTIM
Number of Associated Samples	91
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.80 %
% of genes near scaffold ends (potentially truncated)	97.35 %
% of genes from short scaffolds (< 2000 bps)	93.81 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.991 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.434 % of family members)
Environment Ontology (ENVO)	Unclassified (29.204 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.602 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.11% β-sheet: 16.44% Coil/Unstructured: 79.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00543	P-II	9.73
PF13466	STAS_2	2.65
PF00072	Response_reg	1.77
PF02201	SWIB	1.77
PF01381	HTH_3	1.77
PF13384	HTH_23	1.77
PF00149	Metallophos	0.88
PF00583	Acetyltransf_1	0.88
PF00199	Catalase	0.88
PF06202	GDE_C	0.88
PF14417	MEDS	0.88
PF00440	TetR_N	0.88
PF00528	BPD_transp_1	0.88
PF02803	Thiolase_C	0.88
PF03118	RNA_pol_A_CTD	0.88
PF02915	Rubrerythrin	0.88
PF01872	RibD_C	0.88
PF12850	Metallophos_2	0.88
PF07366	SnoaL	0.88
PF00561	Abhydrolase_1	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	9.73
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	1.77
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.88
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.88
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.88
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.88
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.88
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
All Organisms	root	All Organisms	23.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
cellular organisms	root	All Organisms → cellular organisms	23.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.01 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.42 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4.42 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.77 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.77 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.88 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.88 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.88 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.88 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.88 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.88 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.88 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.88 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	0.88 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.88 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.88 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.99 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Verrucomicrobium spinosum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	0.88 %
Prosthecobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	0.88 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.88 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.88 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.88 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.88 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig20549	Not Available	1233	Open in IMG/M
2170459009\|GA8DASG01EBKEP	Not Available	537	Open in IMG/M
2170459009\|GA8DASG02JHDVX	Not Available	535	Open in IMG/M
3300002245\|JGIcombinedJ26739_100226460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1761	Open in IMG/M
3300002245\|JGIcombinedJ26739_100819948	Not Available	811	Open in IMG/M
3300002245\|JGIcombinedJ26739_101501397	Not Available	569	Open in IMG/M
3300003368\|JGI26340J50214_10049135	Not Available	1174	Open in IMG/M
3300003368\|JGI26340J50214_10111578	Not Available	697	Open in IMG/M
3300003368\|JGI26340J50214_10143767	Not Available	598	Open in IMG/M
3300004092\|Ga0062389_100428499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1451	Open in IMG/M
3300005332\|Ga0066388_101979582	All Organisms → cellular organisms → Bacteria → Proteobacteria	1043	Open in IMG/M
3300005435\|Ga0070714_102027071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300005439\|Ga0070711_100930767	Not Available	743	Open in IMG/M
3300005536\|Ga0070697_100145397	Not Available	1995	Open in IMG/M
3300005536\|Ga0070697_100527978	All Organisms → cellular organisms → Bacteria → Proteobacteria	1034	Open in IMG/M
3300005559\|Ga0066700_10881317	Not Available	596	Open in IMG/M
3300005610\|Ga0070763_10048676	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	2009	Open in IMG/M
3300006052\|Ga0075029_100563763	Not Available	758	Open in IMG/M
3300006086\|Ga0075019_11063263	Not Available	524	Open in IMG/M
3300006173\|Ga0070716_100367678	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300006173\|Ga0070716_101549900	Not Available	543	Open in IMG/M
3300006176\|Ga0070765_100671209	Not Available	979	Open in IMG/M
3300006860\|Ga0063829_1393615	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300006893\|Ga0073928_10132572	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300009038\|Ga0099829_11333218	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300009092\|Ga0105250_10149177	Not Available	972	Open in IMG/M
3300009672\|Ga0116215_1462332	Not Available	549	Open in IMG/M
3300009700\|Ga0116217_10185728	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300010339\|Ga0074046_10260377	Not Available	1074	Open in IMG/M
3300010339\|Ga0074046_10724258	Not Available	584	Open in IMG/M
3300010343\|Ga0074044_10515327	Not Available	781	Open in IMG/M
3300010379\|Ga0136449_101251102	Not Available	1163	Open in IMG/M
3300010379\|Ga0136449_101383664	Not Available	1088	Open in IMG/M
3300011003\|Ga0138514_100107775	Not Available	607	Open in IMG/M
3300011089\|Ga0138573_1257755	Not Available	615	Open in IMG/M
3300011120\|Ga0150983_10590413	Not Available	607	Open in IMG/M
3300011120\|Ga0150983_11982110	Not Available	542	Open in IMG/M
3300011120\|Ga0150983_15612869	Not Available	504	Open in IMG/M
3300012180\|Ga0153974_1079984	Not Available	731	Open in IMG/M
3300012180\|Ga0153974_1182258	Not Available	503	Open in IMG/M
3300012199\|Ga0137383_10606618	Not Available	800	Open in IMG/M
3300012351\|Ga0137386_10594276	Not Available	797	Open in IMG/M
3300012362\|Ga0137361_11301897	Not Available	651	Open in IMG/M
3300012582\|Ga0137358_10547115	Not Available	778	Open in IMG/M
3300012923\|Ga0137359_11054971	Not Available	696	Open in IMG/M
3300012958\|Ga0164299_10871859	Not Available	650	Open in IMG/M
3300012961\|Ga0164302_10993432	Not Available	653	Open in IMG/M
3300012984\|Ga0164309_11427886	Not Available	591	Open in IMG/M
3300014969\|Ga0157376_12282367	Not Available	580	Open in IMG/M
3300015242\|Ga0137412_10775028	Not Available	706	Open in IMG/M
3300016404\|Ga0182037_12006378	Not Available	519	Open in IMG/M
3300020579\|Ga0210407_10742864	Not Available	759	Open in IMG/M
3300020580\|Ga0210403_11009746	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300020582\|Ga0210395_10516613	Not Available	898	Open in IMG/M
3300020583\|Ga0210401_10585720	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300021088\|Ga0210404_10240700	Not Available	982	Open in IMG/M
3300021168\|Ga0210406_11053848	Not Available	602	Open in IMG/M
3300021171\|Ga0210405_10309200	Not Available	1249	Open in IMG/M
3300021171\|Ga0210405_10702903	Not Available	781	Open in IMG/M
3300021171\|Ga0210405_11257492	Not Available	546	Open in IMG/M
3300021181\|Ga0210388_10466355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Prosthecobacter	1109	Open in IMG/M
3300021181\|Ga0210388_10558843	Not Available	1002	Open in IMG/M
3300021405\|Ga0210387_11760562	Not Available	523	Open in IMG/M
3300021407\|Ga0210383_11488541	Not Available	560	Open in IMG/M
3300021432\|Ga0210384_10326042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1383	Open in IMG/M
3300021475\|Ga0210392_10566495	Not Available	841	Open in IMG/M
3300021477\|Ga0210398_10771125	Not Available	776	Open in IMG/M
3300021478\|Ga0210402_11987064	Not Available	507	Open in IMG/M
3300021479\|Ga0210410_11785546	Not Available	509	Open in IMG/M
3300021559\|Ga0210409_10381907	Not Available	1263	Open in IMG/M
3300022713\|Ga0242677_1018879	Not Available	834	Open in IMG/M
3300025320\|Ga0209171_10000358	All Organisms → cellular organisms → Bacteria	132542	Open in IMG/M
3300025905\|Ga0207685_10536942	Not Available	620	Open in IMG/M
3300025939\|Ga0207665_11049218	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300025939\|Ga0207665_11403852	Not Available	556	Open in IMG/M
3300027439\|Ga0209332_1050725	Not Available	764	Open in IMG/M
3300027565\|Ga0209219_1065548	Not Available	904	Open in IMG/M
3300027603\|Ga0209331_1022062	Not Available	1649	Open in IMG/M
3300027603\|Ga0209331_1072470	Not Available	859	Open in IMG/M
3300027603\|Ga0209331_1170373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300027609\|Ga0209221_1031647	Not Available	1411	Open in IMG/M
3300027660\|Ga0209736_1119126	Not Available	711	Open in IMG/M
3300027684\|Ga0209626_1063499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	933	Open in IMG/M
3300027737\|Ga0209038_10013752	All Organisms → cellular organisms → Bacteria	2370	Open in IMG/M
3300027738\|Ga0208989_10291564	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300027795\|Ga0209139_10281083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	587	Open in IMG/M
3300027824\|Ga0209040_10191329	Not Available	1069	Open in IMG/M
3300027889\|Ga0209380_10612065	Not Available	630	Open in IMG/M
3300027911\|Ga0209698_11371254	Not Available	516	Open in IMG/M
3300028047\|Ga0209526_10946519	Not Available	519	Open in IMG/M
3300028450\|Ga0189898_1021991	Not Available	656	Open in IMG/M
3300028746\|Ga0302233_10386467	Not Available	530	Open in IMG/M
3300028906\|Ga0308309_11043399	Not Available	708	Open in IMG/M
3300029636\|Ga0222749_10049996	Not Available	1844	Open in IMG/M
3300029636\|Ga0222749_10121894	Not Available	1246	Open in IMG/M
3300029636\|Ga0222749_10123028	Not Available	1240	Open in IMG/M
3300029636\|Ga0222749_10486538	Not Available	666	Open in IMG/M
3300030007\|Ga0311338_11360413	Not Available	663	Open in IMG/M
3300030503\|Ga0311370_10697227	Not Available	1193	Open in IMG/M
3300031057\|Ga0170834_111522496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → Verrucomicrobium spinosum	537	Open in IMG/M
3300031231\|Ga0170824_123524930	Not Available	517	Open in IMG/M
3300031469\|Ga0170819_10364553	Not Available	686	Open in IMG/M
3300031543\|Ga0318516_10675179	Not Available	587	Open in IMG/M
3300031572\|Ga0318515_10106944	Not Available	1471	Open in IMG/M
3300031713\|Ga0318496_10835002	Not Available	508	Open in IMG/M
3300031893\|Ga0318536_10161448	Not Available	1140	Open in IMG/M
3300031897\|Ga0318520_10367564	Not Available	875	Open in IMG/M
3300031910\|Ga0306923_11014598	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300032160\|Ga0311301_10274530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	2739	Open in IMG/M
3300032205\|Ga0307472_101578569	Not Available	644	Open in IMG/M
3300033289\|Ga0310914_10312189	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.58%
Host-Associated	Host-Associated	3.54%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.96%
Aquatic	Environmental → Aquatic	10.62%
Plants	Host-Associated → Plants	1.77%
Fungi	Host-Associated → Fungi	1.77%
Modeled	Engineered → Modeled	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.42%
Freshwater	Environmental → Aquatic → Freshwater	6.19%
Sediment	Environmental → Aquatic → Sediment	2.65%
Peat	Environmental → Terrestrial → Peat	2.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.77%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.77%
Mycelium	Host-Associated → Fungi → Mycelium	1.77%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.89%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.21%
Loam	Environmental → Terrestrial → Soil → Loam	26.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.77%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.19%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.65%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.77%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.77%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.16%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.08%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.54%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.65%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.65%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.77%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.77%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006860	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022713	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028450	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 63 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0549.00001660	2166559005	Simulated	LGSFRTLRFGERKPFTGSCYHGQLDLFYYRDPGLKAGKSFPLWTIM
F47_07122130	2170459009	Grass Soil	SFRALRFGKKIPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTVQ
F47_05105600	2170459009	Grass Soil	AAKPFHGTCNNGQLDLFYYRDPGLITGKSFPLWEIQ
JGIcombinedJ26739_1002264604	3300002245	Forest Soil	FNTLTFGEKKPFIGSCHNGRLDLIYCVDPGLKTGGPFPLWKID*
JGIcombinedJ26739_1008199482	3300002245	Forest Soil	TLAFGEKKPSAGSYHNGRLDLVYYMDPGLKTGGPFPLWRID*
JGIcombinedJ26739_1015013971	3300002245	Forest Soil	SQYRILVQIELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDLGIKAGKSFPLWTIM
JGI26340J50214_100491354	3300003368	Bog Forest Soil	QIELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLXYYRDPGXKAGKSFPLWTIM*
JGI26340J50214_101115782	3300003368	Bog Forest Soil	NQYRVLVQIELEKYLGSFRTLRFGESKPFHGTCHNGQLDLFYYRDPGLRTGKSFPLWTIQ
JGI26340J50214_101437671	3300003368	Bog Forest Soil	RILVQIELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTIM*
Ga0062389_1004284991	3300004092	Bog Forest Soil	VLVQIELEKYLGSFRTLRFGESKPFHGTCHNGQLDLFYYRNPGLKTGKSFPLWTIQ*
Ga0066388_1019795824	3300005332	Tropical Forest Soil	GSFHTLSFGESKPFTGACHNGKVDLFYYGDPGVKVGQPFPLWTIQ*
Ga0070714_1020270712	3300005435	Agricultural Soil	VLVQIELEKYLASFRTLRFGESKPFHGTCHNGQLDLFYYRNPGLKTGKSFPLWT
Ga0070711_1009307671	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	TLRFGEQIPFSGTCFHGQLDLFYYRDPGVKAGKSFPLWTIM*
Ga0070697_1001453971	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VQIELEKYLGSFHSLRFGERKPFTGTYYNGQLDLFYYRDPGLKAGKSFPLWTLSD*
Ga0070697_1005279781	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	YRVLVQIELEKYLGSFQSFRFGKNKRFTGTCYHGQLDLFYYRDPGLIAGKSFPLWTKK*
Ga0066700_108813171	3300005559	Soil	YRILVQIELEKYLGSFHTLRFGEKKPFIGSCHNGQLDLFYYRDPGIKAGKSFPLWTIMLP
Ga0070763_100486764	3300005610	Soil	RFGKKIPFTGSCHKGQLDLFYYRDPGLKAGKSFPLWTVQ*
Ga0075029_1005637631	3300006052	Watersheds	FGERKPFTGSCHNGQLDLFYRDPGIKVGKSFPLWTIM*
Ga0075019_110632632	3300006086	Watersheds	FGESKPFYGTCYNRQLDLFYYRDPGLKIGKSFPLWTIQ*
Ga0070716_1003676781	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MQIELEKYLGSFQSFRFGKNKPFTGTCYHGQLDLFYYRDPGLKAGNSFPLWTKK*
Ga0070716_1015499001	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	FGEKKPFMGFTHNGRLDLVYHEDPHLKAGQPFPLWTIQ*
Ga0070765_1006712093	3300006176	Soil	SFRTLRFGESKPFHGTCHNGQLDLFYYRDPGLKTGKSFPLWTLQ*
Ga0063829_13936151	3300006860	Peatlands Soil	KKPFTGSCYHGQLDLFYYRDPGLKVGKSFPLWTIM*
Ga0073928_101325723	3300006893	Iron-Sulfur Acid Spring	ELEKYLGSFRTLRFGESKPFHGTCHNGQLDLFYYRDPGLKTGKSFPLWTII*
Ga0099829_113332182	3300009038	Vadose Zone Soil	GENKPFTGFCHNGQLDLFYYRDPGLKAGKSFPLWTIQ*
Ga0105250_101491771	3300009092	Switchgrass Rhizosphere	LRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRID*
Ga0116215_14623321	3300009672	Peatlands Soil	SQYRILVQIELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYRDPGIEVGKSFPLWTIM*
Ga0116217_101857282	3300009700	Peatlands Soil	VLVQIELEKYLGRFHTLRFGESKPFTGTCHNGQLDLFYYRDPGLKAGKSFPLWTIR*
Ga0074046_102603771	3300010339	Bog Forest Soil	QIELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGTKAGKSFPLWTIM*
Ga0074046_107242581	3300010339	Bog Forest Soil	YRVLVQIELEKYLGSFRTLRFGESKPFHGTCYNRQLDLFYYRDPGLKIGKSFPLWTIQ*
Ga0074044_105153271	3300010343	Bog Forest Soil	QYRILVQIELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGTKAGKSFPLWTIM*
Ga0136449_1012511022	3300010379	Peatlands Soil	FGEKKPFTGFCRDGQLDLVYFQDPGLEAGESFPLWTIK*
Ga0136449_1013836641	3300010379	Peatlands Soil	KPFTGSCHNGQLDLFYYRDPGIKAGKSFPLWTIM*
Ga0138514_1001077752	3300011003	Soil	ELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGVKAGKSFPLWTIM*
Ga0138573_12577553	3300011089	Peatlands Soil	EKKPFTGSCYHGQLDLFYYRDPGLKVGKSFPLWTIM*
Ga0150983_105904131	3300011120	Forest Soil	LVQIELEKYLGSFRTLRFGESKPFHGTCHDGQLDLFYYRDPGLKTGKSFPLWTIQ*
Ga0150983_119821101	3300011120	Forest Soil	TLRFGERIPFTGSCHNRQLDLFYYRDPGLKAGKAFPLWTIQ*
Ga0150983_156128691	3300011120	Forest Soil	QIMLRKFRGSFNTLTFGEKKPFIGSCHNGRLDLVYCVDPGLKTGGPFPLWRID*
Ga0153974_10799842	3300012180	Attine Ant Fungus Gardens	RGSFHTLQFGEKKPFIGFTHNGRLDLVYHEDPHLKAGQPFPLWTIQ*
Ga0153974_11822581	3300012180	Attine Ant Fungus Gardens	TLRFGKSKPFTGTCYHGKLDLFYYRDPGLKVGKPFPLWTIK*
Ga0137383_106066182	3300012199	Vadose Zone Soil	LVQIELDKYLGSFHTLRFGEKKPFTGSCHNGKLDLFYYRDPGIKAGKSFPLWTIM*
Ga0137386_105942763	3300012351	Vadose Zone Soil	ELDKYLGSFHALRCGEKKPVTGSCHNGKLDLFYYRDPGIKAGKSFPLWTIM*
Ga0137361_113018971	3300012362	Vadose Zone Soil	ELEKYLGPFHTLRFGESIPFTGTCHNGQLDLFYYRDPGLKKGKSFPLWTIQ*
Ga0137358_105471151	3300012582	Vadose Zone Soil	RFGKREPFTGTCYRGQLDLFYYRDPGLQAGNSFPLWRIVRF*
Ga0137359_110549713	3300012923	Vadose Zone Soil	FGERKPFTGSCYHGQLDLFYSRDPGLKAGKSFPLWTIM*
Ga0164299_108718591	3300012958	Soil	HVLVQIELEKYIGPFHSLRFAGESKPFRGNCHSSQLDLFYGKNPGLKAGQSFSLWSIQ*
Ga0164302_109934322	3300012961	Soil	QYRVLVQIELEKYLGSFRTLRFGERKPFTGSCYHGQLDLFYYRDPGLKAGKSFPLWTIM*
Ga0164309_114278861	3300012984	Soil	ELEKYLGSFRTLRFGAAKPFHGTCHNGQLDLFYYRDPGLKTGNSFPLWTIQ*
Ga0157376_122823671	3300014969	Miscanthus Rhizosphere	LEKYLGSFQSFRFGKNKRFTGTCYHGQLDLFYYRDPGLIAGKSFPLWTKK*
Ga0137412_107750281	3300015242	Vadose Zone Soil	TLRFGEKKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTIM*
Ga0182037_120063781	3300016404	Soil	DQYNVIVRIGLAKYRSSFNTPAFGENKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTIQ
Ga0210407_107428641	3300020579	Soil	GKNKPFTGSFYHGQLDLFYYRDPGLKAGKPFPLWTIT
Ga0210403_110097461	3300020580	Soil	KKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTIM
Ga0210395_105166132	3300020582	Soil	RVLVQIELDRYLGSFHHLKFGKRKPFTGSFYHGQLDLFYYRDPGLKAGKPFPLWTIK
Ga0210401_105857202	3300020583	Soil	YRVLVQIELEKYLGSFRTLRFGESKPFHGTCHNSQLDLFYYRDPGLKAGKSFPLWTIQ
Ga0210404_102407001	3300021088	Soil	KYRGSFNTLKFGEKKPFTGFCRDGQLDLVYFQDPGLEAGESFPLWTIQ
Ga0210406_110538482	3300021168	Soil	IELEKYLGSFRTLRFGERKPFTGSCYHGQLDLFYYRDPGLKAGKSFPLWTIM
Ga0210405_103092002	3300021171	Soil	KVIVRIALAKYRGSFNTLAFGENKPSTGFCHNGQLDLFYYRDSGLKAGKSFPLWTIQ
Ga0210405_107029032	3300021171	Soil	KFGEKKPSTGFTHNGQLDLVYHKDPHLKTGQPFPLWTIM
Ga0210405_112574921	3300021171	Soil	GERIPFTGSCHNRQLDLFYYRDPGLKAGKAFPLWTIQ
Ga0210388_104663551	3300021181	Soil	VQIELDQYLGSFRALRFGKKIPFTGSCHKGQLDLFYYRDPGLKAGKSFPLWTVQ
Ga0210388_105588431	3300021181	Soil	RFGEKKPFIGSCHNGQLDLFYYRDPGLKAGKSFPLWTIM
Ga0210387_117605621	3300021405	Soil	ELEKYVGSFHTLVFGKRRPFTGSCYKGQLDLFYYRDPGLKAGKPFPLWTIK
Ga0210383_114885411	3300021407	Soil	SSQYRVLVQIELEKYLGSFRTLRFGERKPFTGSCYHGQLDLFYYRDPGLKAGEPFPLWTI
Ga0210384_103260421	3300021432	Soil	YRVLVQIELEKYVGSFHTLVFGKRRPFTGSCYKGQLDLFYYRDPGLKAGKPFPLWTIK
Ga0210392_105664953	3300021475	Soil	KFGKRKPFTGSFYHGQLDLFYYRDPGLKAGKPFPLWTIT
Ga0210398_107711251	3300021477	Soil	LEKYLGSCRTLRFGERKPFTGSCYHGQLDLFYYRDPGLKAGKSFPLWTIM
Ga0210402_119870642	3300021478	Soil	VQIELEKYLGSFHTLRFGERKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTIT
Ga0210410_117855461	3300021479	Soil	QIEFEKYLGSFRTFRFGKKKPFTGTCYHGQLDLFYYRDPGLKAGKSFPLWTII
Ga0210409_102300291	3300021559	Soil	IVRIGLTKYRGSFNTLKFGEKKPFTGFCRDGQLDLVYFQDPGLEAGEAFPLWTIQ
Ga0210409_103819071	3300021559	Soil	YLGSFRTFRFGKKKPFTGTCYHGQLDLFYYRDPGLKAGKSFPLWTII
Ga0242677_10188791	3300022713	Soil	LAFGENKPFTDLCHNAQLDLFYYRYPGLKAGKSFPLWTVL
Ga0209171_10000358132	3300025320	Iron-Sulfur Acid Spring	KFGEKKPLTGFTHNGQLDLVYHEDPHLKAGQPFPLWTIQ
Ga0207685_105369421	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGIKAGKSFPLWTIM
Ga0207665_110492181	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	NFGEKKPFTGFTQNGQLDLVYHKDPHLKAGQPFPLWTIQ
Ga0207665_114038522	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	QFGEKKPFMGFTHNGRLDLVYHEDPHLKAGQPFPLWTIQ
Ga0209332_10507251	3300027439	Forest Soil	SQYRILVQIELERYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGIKAGKSFPLWTIR
Ga0209219_10655481	3300027565	Forest Soil	SSQYRILVQIELERYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGIKAGKSFPLWTI
Ga0209331_10220621	3300027603	Forest Soil	SQYRVLVQIELEKYLGSFQSFRFGKNKPFTGTCYHGQLDLFYYRDPGLKAGNSFPLDKK
Ga0209331_10724701	3300027603	Forest Soil	LKFGEKKPFTGFCRDGQLDLVYYQDPGLEAGQSFPLWTIQ
Ga0209331_11703731	3300027603	Forest Soil	SFNTLAFGEKKPSAGSYHNGRLDLVYYMDPGLKTGGPFPLWRID
Ga0209221_10316471	3300027609	Forest Soil	RGSFHTLTFGDRKPFTGFSHNGQLDLVYDEDPHLKAGQPFPLWTIQ
Ga0209736_11191262	3300027660	Forest Soil	YLGSFHTLRFGEQIPFTGTCFHGQLDLFYYRDPGVKAGKSFPLWTIM
Ga0209626_10634991	3300027684	Forest Soil	SSQYRIRVQIELEKYIGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPSIKAGKSFPLWTI
Ga0209038_100137521	3300027737	Bog Forest Soil	KKPFTGFCRDGQLDLVYFQDPGLEAGESFPLWTIQ
Ga0208989_102915641	3300027738	Forest Soil	LVQIELEKYLGSFHTLRFGESKPFTGKCHNGQLDLFYYRDPGLKEGKSFPLWTIQ
Ga0209139_102810831	3300027795	Bog Forest Soil	NTLKFGEKKPFTGFTHNGQLDLVYHKDPHLKAGQPFPLWTIQ
Ga0209040_101913291	3300027824	Bog Forest Soil	IELEKYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGTKAGKSFPLWTIM
Ga0209380_106120652	3300027889	Soil	EKKPFMGFTHNGQLDLVYREDPHLEAGQPFPLWTIQ
Ga0209698_113712541	3300027911	Watersheds	GSFHTLRFGEKKPFTGSFHNGQLDLFYYRDPGLKAGKSFPLWTIM
Ga0209526_109465192	3300028047	Forest Soil	GSFLTLKFGEKKPFTGFTHNGQLDLVYHEDPHLKAGQVFPLWTIQ
Ga0189898_10219911	3300028450	Peatlands Soil	KKPFTGSCYHGQLDLFYYRDPGLKVGKSFPLWTIM
Ga0302233_103864671	3300028746	Palsa	KKPFIGSYHNGRLDLVYYRDPGLKTGGPFPLWRLD
Ga0308309_110433992	3300028906	Soil	TLNFGEKKPFTGFTHNGQLDLVYHKDPHLKAGQPFPLWTIQ
Ga0222749_100499961	3300029636	Soil	AEKKPFTGFTHNGHLDLIYREDPHLKAGQPFPLWTIQ
Ga0222749_101218943	3300029636	Soil	AKYRGSFNTLAFGENKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLSTIQ
Ga0222749_101230281	3300029636	Soil	LVQIELEQYLGSFHTLRFGEKKPFTGSCHNGQLDLFYYRDPGLKAGKSFPLWTIM
Ga0222749_104865381	3300029636	Soil	LGSFYTLRFGERKPFTGACHNGQVDLFYYRDPGVKAGKPFPLWTIH
Ga0311338_113604131	3300030007	Palsa	QSFRFGNNKPFTGTCYHGQLDLSYYRDPGLKTEKFFPLGKEN
Ga0311370_106972273	3300030503	Palsa	SFNTLTFGEKKPFIGSYHNGRLDLVYYRDPGLKTGGPFPLWRLD
Ga0170834_1115224962	3300031057	Forest Soil	VQIELDQYLGSFRALRFGKKIPFTGSCHNGQLDLFYYRDPGLKAGK
Ga0170822_122822362	3300031122	Forest Soil	VVVRIGFPRYRGSFLTLKFGEKKPFTGFTHNGKLDLVYHEDPHLKAGQPFPLWTIQ
Ga0170824_1235249301	3300031231	Forest Soil	RYRGSFLTLKFGEKKPFTGFTHNGQLDLVYHEDPHLKAGQPFPLWTIQ
Ga0170819_103645531	3300031469	Forest Soil	KYLGSFHTLRFGEKRPFTGTCYRGQLDLFYYRDPGLKAGKPFPLWTIM
Ga0318516_106751791	3300031543	Soil	YLGSFHTLRFGESKPFWGACHYGKVELFYYRDPGVRKGNPFPLWTIQ
Ga0318515_101069441	3300031572	Soil	FGESKPFWGACHYGKVELFYYRDPGVRKGNPFPLWTIQ
Ga0318496_108350023	3300031713	Soil	RFGESKPFTDACHNGKVDLFYYGDPGVKVGQPFPLWTIQ
Ga0318536_101614484	3300031893	Soil	SQYRVLVQIELDRYLGSFHTLRFGESKPFWGACHYGKVELFYYRDPGVRKGNPFPLWTIQ
Ga0318520_103675642	3300031897	Soil	IELEKYLGSLHTLRFGEKKPFTGSCHNGQLDLFYYRDPGIKAGKSFPLWTIM
Ga0306923_110145983	3300031910	Soil	LRFGESKPFTGACHNGKVDLFYYGDPGVKVGQPFPLWTIQ
Ga0311301_102745307	3300032160	Peatlands Soil	VQIELDKYLGSFHTLRFGKSKPFTGSCYHGQLDLFYYRDPGLKIGKSFPLWALI
Ga0307472_1015785692	3300032205	Hardwood Forest Soil	QYRVLVQIELERYQGSFHTLRFGESKPFAGTGHNGQLDLFYYRDLGVKVGKPFPLS
Ga0310914_103121895	3300033289	Soil	LDRYLGSFHTLRFGESKPFWGACHYGKVELFYYRDPGVRKGNPFPLWTIQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083159

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences