Metagenome / Metatranscriptome Family F083162

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083162
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	54 residues
Representative Sequence	MSSATESPHGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP
Number of Associated Samples	92
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.76 %
% of genes near scaffold ends (potentially truncated)	34.51 %
% of genes from short scaffolds (< 2000 bps)	84.07 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (76.106 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.584 % of family members)
Environment Ontology (ENVO)	Unclassified (30.088 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.442 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.37% β-sheet: 0.00% Coil/Unstructured: 64.63%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF07228	SpoIIE	11.61
PF04545	Sigma70_r4	7.14
PF00497	SBP_bac_3	4.46
PF02541	Ppx-GppA	4.46
PF00392	GntR	2.68
PF00211	Guanylate_cyc	1.79
PF02656	DUF202	1.79
PF00496	SBP_bac_5	0.89
PF03449	GreA_GreB_N	0.89
PF03060	NMO	0.89
PF00118	Cpn60_TCP1	0.89
PF01494	FAD_binding_3	0.89
PF09985	Glucodextran_C	0.89
PF06724	DUF1206	0.89
PF01471	PG_binding_1	0.89
PF00528	BPD_transp_1	0.89
PF03979	Sigma70_r1_1	0.89
PF03006	HlyIII	0.89
PF04020	Phage_holin_4_2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	8.93
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.79
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.79
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	1.79
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.89
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.89
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.89
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.89
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.89
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.89
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.89
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.89
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.60 %
Unclassified	root	N/A	23.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	61.95 %
Unclassified	root	N/A	23.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.65 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	35.40 %
Unclassified	root	N/A	23.89 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6.19 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.65 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	24.78 %
Unclassified	root	N/A	23.89 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.31 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.65 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	2.65 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.65 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.78 %
Unclassified	root	N/A	23.89 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	3.54 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	2.65 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2.65 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.65 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.88 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.78 %
Unclassified	root	N/A	23.89 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3.54 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	2.65 %
Subtercola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Subtercola	2.65 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.65 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.88 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.78 %
Unclassified	root	N/A	23.89 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	3.54 %
Subtercola boreus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Subtercola → Subtercola boreus	2.65 %
unclassified Blastococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus	2.65 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.65 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.88 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	24.78 %
Unclassified	root	N/A	23.89 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	3.54 %
Blastococcus sp. PRF04-17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. PRF04-17	2.65 %
Subtercola boreus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Subtercola → Subtercola boreus	2.65 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.65 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.88 %
Betaproteobacteria bacterium 13_1_20CM_3_63_8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	0.88 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.88 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig113204	Not Available	936	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig130688	Not Available	884	Open in IMG/M
2228664022\|INPgaii200_c1170026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Subtercola → Subtercola boreus	924	Open in IMG/M
2228664022\|INPgaii200_c1170111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Subtercola → Subtercola boreus	812	Open in IMG/M
3300000953\|JGI11615J12901_11832888	Not Available	576	Open in IMG/M
3300002568\|C688J35102_119713006	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300004081\|Ga0063454_101722851	Not Available	546	Open in IMG/M
3300004153\|Ga0063455_101583776	Not Available	515	Open in IMG/M
3300004157\|Ga0062590_101236033	Not Available	731	Open in IMG/M
3300004480\|Ga0062592_100721507	Not Available	870	Open in IMG/M
3300004643\|Ga0062591_100677009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	928	Open in IMG/M
3300005175\|Ga0066673_10059095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1958	Open in IMG/M
3300005175\|Ga0066673_10060238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1941	Open in IMG/M
3300005175\|Ga0066673_10060238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1941	Open in IMG/M
3300005175\|Ga0066673_10722699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300005180\|Ga0066685_10916458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300005338\|Ga0068868_100183811	All Organisms → cellular organisms → Bacteria	1735	Open in IMG/M
3300005354\|Ga0070675_102128168	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005366\|Ga0070659_100168204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1794	Open in IMG/M
3300005406\|Ga0070703_10059990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1242	Open in IMG/M
3300005434\|Ga0070709_10030802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3222	Open in IMG/M
3300005437\|Ga0070710_10157764	Not Available	1404	Open in IMG/M
3300005440\|Ga0070705_100149118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1549	Open in IMG/M
3300005518\|Ga0070699_100034884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4347	Open in IMG/M
3300005539\|Ga0068853_101480535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Subtercola → Subtercola boreus	657	Open in IMG/M
3300005545\|Ga0070695_100063681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2397	Open in IMG/M
3300005545\|Ga0070695_100197184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1436	Open in IMG/M
3300005546\|Ga0070696_100379966	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300005546\|Ga0070696_101713301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300005547\|Ga0070693_100300352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. PRF04-17	1082	Open in IMG/M
3300005549\|Ga0070704_100324140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1292	Open in IMG/M
3300005549\|Ga0070704_100730082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	880	Open in IMG/M
3300005558\|Ga0066698_10323539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1067	Open in IMG/M
3300005576\|Ga0066708_10076476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1940	Open in IMG/M
3300005719\|Ga0068861_100187688	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300006031\|Ga0066651_10170175	Not Available	1148	Open in IMG/M
3300006031\|Ga0066651_10476674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	661	Open in IMG/M
3300006032\|Ga0066696_10281460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1078	Open in IMG/M
3300006046\|Ga0066652_100086726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2486	Open in IMG/M
3300006046\|Ga0066652_100328827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1368	Open in IMG/M
3300006049\|Ga0075417_10190176	Not Available	968	Open in IMG/M
3300006173\|Ga0070716_100320634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1086	Open in IMG/M
3300006173\|Ga0070716_100737157	Not Available	757	Open in IMG/M
3300006196\|Ga0075422_10183470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	852	Open in IMG/M
3300006755\|Ga0079222_10150924	All Organisms → cellular organisms → Bacteria	1321	Open in IMG/M
3300006804\|Ga0079221_10127342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1296	Open in IMG/M
3300006914\|Ga0075436_100108932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1932	Open in IMG/M
3300009011\|Ga0105251_10489104	Not Available	574	Open in IMG/M
3300009094\|Ga0111539_10639028	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300009094\|Ga0111539_13453329	Not Available	508	Open in IMG/M
3300009098\|Ga0105245_11618948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. PRF04-17	699	Open in IMG/M
3300009176\|Ga0105242_11582058	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300010044\|Ga0126310_10002978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6932	Open in IMG/M
3300010100\|Ga0127440_1106533	Not Available	600	Open in IMG/M
3300010321\|Ga0134067_10346002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300010322\|Ga0134084_10159992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	763	Open in IMG/M
3300010371\|Ga0134125_11666892	Not Available	694	Open in IMG/M
3300010371\|Ga0134125_12271884	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300010373\|Ga0134128_10609497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1215	Open in IMG/M
3300010375\|Ga0105239_10481031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1411	Open in IMG/M
3300010396\|Ga0134126_10365489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1681	Open in IMG/M
3300010399\|Ga0134127_10384782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1382	Open in IMG/M
3300010401\|Ga0134121_10118301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2236	Open in IMG/M
3300012201\|Ga0137365_10228099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1388	Open in IMG/M
3300012208\|Ga0137376_11353447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300012354\|Ga0137366_10634962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	764	Open in IMG/M
3300012356\|Ga0137371_10220309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1484	Open in IMG/M
3300012356\|Ga0137371_11308327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300012951\|Ga0164300_10032169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1937	Open in IMG/M
3300012951\|Ga0164300_11136485	Not Available	513	Open in IMG/M
3300012961\|Ga0164302_10103746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1578	Open in IMG/M
3300012985\|Ga0164308_11132086	Not Available	703	Open in IMG/M
3300012986\|Ga0164304_10331073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1056	Open in IMG/M
3300013297\|Ga0157378_10460296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1264	Open in IMG/M
3300014157\|Ga0134078_10124631	Not Available	989	Open in IMG/M
3300014157\|Ga0134078_10243342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	752	Open in IMG/M
3300014157\|Ga0134078_10278329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300015371\|Ga0132258_10695449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2559	Open in IMG/M
3300018027\|Ga0184605_10001744	All Organisms → cellular organisms → Bacteria	7106	Open in IMG/M
3300018027\|Ga0184605_10028993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	2271	Open in IMG/M
3300018054\|Ga0184621_10015085	All Organisms → cellular organisms → Bacteria	2296	Open in IMG/M
3300018482\|Ga0066669_10337779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium 13_1_20CM_3_63_8	1244	Open in IMG/M
3300019767\|Ga0190267_11342631	Not Available	537	Open in IMG/M
3300020008\|Ga0193757_1008293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	981	Open in IMG/M
3300020022\|Ga0193733_1074366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	955	Open in IMG/M
3300021445\|Ga0182009_10162153	Not Available	1069	Open in IMG/M
3300021510\|Ga0222621_1131333	Not Available	533	Open in IMG/M
3300021951\|Ga0222624_1226555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300025906\|Ga0207699_11064898	Not Available	598	Open in IMG/M
3300025910\|Ga0207684_11046496	Not Available	681	Open in IMG/M
3300025916\|Ga0207663_10116050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1825	Open in IMG/M
3300025935\|Ga0207709_10542832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	913	Open in IMG/M
3300025949\|Ga0207667_10255368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1793	Open in IMG/M
3300026306\|Ga0209468_1005887	All Organisms → cellular organisms → Bacteria	4752	Open in IMG/M
3300026330\|Ga0209473_1322959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300026342\|Ga0209057_1028123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3006	Open in IMG/M
3300026548\|Ga0209161_10481892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300026550\|Ga0209474_10031068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4002	Open in IMG/M
3300027775\|Ga0209177_10374406	Not Available	564	Open in IMG/M
3300028711\|Ga0307293_10010574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2578	Open in IMG/M
3300028718\|Ga0307307_10028162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. PRF04-17	1585	Open in IMG/M
3300028784\|Ga0307282_10011334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3587	Open in IMG/M
3300028784\|Ga0307282_10037862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2115	Open in IMG/M
3300028881\|Ga0307277_10006923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4357	Open in IMG/M
3300028881\|Ga0307277_10006928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4356	Open in IMG/M
3300028881\|Ga0307277_10075914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1400	Open in IMG/M
3300030902\|Ga0308202_1091942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300030990\|Ga0308178_1098030	Not Available	619	Open in IMG/M
3300031421\|Ga0308194_10033195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1228	Open in IMG/M
3300031422\|Ga0308186_1021702	Not Available	623	Open in IMG/M
3300031938\|Ga0308175_102218589	Not Available	616	Open in IMG/M
3300033412\|Ga0310810_10249863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1952	Open in IMG/M
3300034447\|Ga0370544_24109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.07%
Host-Associated	Host-Associated	15.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.65%
Plants	Host-Associated → Plants	15.93%
Aquatic	Environmental → Aquatic	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.42%
Sediment	Environmental → Aquatic → Sediment	3.54%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.41%
Loam	Environmental → Terrestrial → Soil → Loam	21.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.54%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.54%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.40%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	6.19%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.04%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	6.19%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.31%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.31%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.42%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031422	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_181 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034447	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_119 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_01991960	2124908045	Soil	MNSTTESPHGNAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP
KansclcFeb2_11104360	2124908045	Soil	MSSATESPRGAAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATPR
INPgaii200_11700262	2228664022	Soil	MSSATESTHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
INPgaii200_11701111	2228664022	Soil	MSSATESXXGNXQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
JGI11615J12901_118328882	3300000953	Soil	MNSTTESPHGNAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
C688J35102_1197130061	3300002568	Soil	RNERSYKMTSAPDYPDRTAERRQKELTERLCVMPVRRSKGTNFKWSTWKWRLGMRGEAT*
Ga0063454_1017228511	3300004081	Soil	MTSAPESANRTAERRQKELTERLCVTPVRRSKGTNFKWSTWKWRFGMRGEATQ*
Ga0063455_1015837761	3300004153	Soil	MTSVPESANRTAELRQKELTERLCVTPVRRSKGTNFKWSTWKWRFGMRGEATQ*
Ga0062590_1012360331	3300004157	Soil	MNYATESPPGTTQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGMRGEATP*
Ga0062592_1007215073	3300004480	Soil	MNSATESPPGTTQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGMRGEATP*
Ga0062591_1006770093	3300004643	Soil	FPPLDERSFKMNYATESPPGTTQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGMRGEATP*
Ga0066673_100590952	3300005175	Soil	MNPATESPQRTAHVRRQKELTQRLGVLPARRSTGTNLKWSTWKRRLGMRGEATS*
Ga0066673_100602381	3300005175	Soil	MNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRMRGQA*
Ga0066673_100602384	3300005175	Soil	LTSIDLFEIFKMNSATESPPSHGSSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRMRGQA*
Ga0066673_107226991	3300005175	Soil	SPTESPHGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
Ga0066685_109164581	3300005180	Soil	MNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRM
Ga0068868_1001838113	3300005338	Miscanthus Rhizosphere	MSSATESPHGNAQLLRQKELTERLCITPVRRSKGHNLSWSTWKWRLRMRGKATA*
Ga0070675_1021281681	3300005354	Miscanthus Rhizosphere	MSSATESPHGNEQLRRQKELTERLCITPVRRGKGHNLNWSTWKWRLRMRGKATA*
Ga0070659_1001682042	3300005366	Corn Rhizosphere	MSSATESPHGNEQLRRQKELTERLCITPVRRGKGHNLNWSTWKWRLRMRGKTTA*
Ga0070703_100599901	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	QMNSATKSPPSHGTTEGLRQKLLTERLGVMPARRSKASNLKWSTWKWRLRMRGPA*
Ga0070709_100308022	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATKSPPSHGTTEGLRQKLLTERLGVMPARRSKASNLKWSTWKWRLRMRGPA*
Ga0070710_101577642	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATESPHGSAQVQRQKELTERLCVLPARRSKGHNLKWSTWKWRLGMRGEATP*
Ga0070705_1001491182	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKTTA*
Ga0070699_1000348843	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATKSPPSHGTTERLRQKLLTERLGVMPARRSKASNLEWSTWKWRLGMRGPA*
Ga0068853_1014805351	3300005539	Corn Rhizosphere	TMSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLSWSTWKWRLRMRGKATAS*
Ga0070695_1000636814	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATESPHGTGQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGMRGQATP*
Ga0070695_1001971842	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKTTA*
Ga0070696_1003799661	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATKSPPSHGTAEGARQKLLTERLGILPARRTKASNLKWSTWKWRL
Ga0070696_1017133011	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	ATKSPPSHGTTEGLRQKLLTERLGVMPARRSKASNLKWSTWKWRLRMRGPA*
Ga0070693_1003003523	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATESPHGTGQLQRQKELTERLCVLPARRSRAHNWKWNTWKWRLGMRGQATP*
Ga0070704_1003241401	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	SHGTTEGLRQKLLTERLGVMPARRSKASNLKWSTWKWRLRMRGPA*
Ga0070704_1007300823	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMR
Ga0066698_103235391	3300005558	Soil	MNSATESPPSHGSSERQKQLTQRLGVMPVRRSKAGN
Ga0066708_100764764	3300005576	Soil	LTWIDLFEIFKMNSATESPPSHGSSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRMRGQA*
Ga0068861_1001876883	3300005719	Switchgrass Rhizosphere	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA*
Ga0066651_101701751	3300006031	Soil	MNAMTESPHGDAQMRRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0066651_104766741	3300006031	Soil	MNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNL
Ga0066696_102814603	3300006032	Soil	MNSATESPPSHGSSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRM
Ga0066652_1000867263	3300006046	Soil	MSSATESPHGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
Ga0066652_1003288274	3300006046	Soil	MTSAPETQQGTAERRQKELTERLGVMPMRRSKGTNFKWSTWKWRLGMRGEAPRG*
Ga0075417_101901763	3300006049	Populus Rhizosphere	MNAMTESPHGTAQLRRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0070716_1003206343	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MNSATESSHGTAQLQRQKELTERLCILPARRSRAHNLKWSTWKWRLGMRGEATP*
Ga0070716_1007371571	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA*
Ga0075422_101834702	3300006196	Populus Rhizosphere	MNAMTESPHGTEQLRRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0079222_101509242	3300006755	Agricultural Soil	MNSATESPAGNAQLQRQKELTERLCVLPARRSKGHNLKWSTWKWRLGMRGEATP*
Ga0079221_101273421	3300006804	Agricultural Soil	SPAGNAQLQRQKELTERLCVLPARRSKGHNLKWSTWKWRLGMRGEATP*
Ga0075436_1001089321	3300006914	Populus Rhizosphere	MNAMTESPHGTAQLRRQKELTERLCITPVRRSKGHNLKWSTWKWR
Ga0105251_104891041	3300009011	Switchgrass Rhizosphere	MNSATESPAGNAQLQRQKELTERLCVLPARRSKGHNLKWSTWKWRLRMRGPA*
Ga0111539_106390281	3300009094	Populus Rhizosphere	KMNAMTESPHGTAQLRRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0111539_134533291	3300009094	Populus Rhizosphere	MNSATESPHGTGQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGMRGQ
Ga0105245_116189481	3300009098	Miscanthus Rhizosphere	MNSATESPHGTGQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGM
Ga0105242_115820582	3300009176	Miscanthus Rhizosphere	MNPATESPPIHGNEERLRQKMLTERLGVMPVRRSKTSNFKWSTW
Ga0126310_100029788	3300010044	Serpentine Soil	MSSATESPQGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
Ga0127440_11065331	3300010100	Grasslands Soil	MNAMTESPHGSAQLQRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0134067_103460022	3300010321	Grasslands Soil	MSSPTESPHGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
Ga0134084_101599923	3300010322	Grasslands Soil	MNSATKSPPSHGTSERQRQLTQRLGVMPVRRSKAGNLKWSTWKWR
Ga0134125_116668922	3300010371	Terrestrial Soil	MNSATKSPPSHGTAEGARQKLLTERLGILPARRTKASNLKWSTWKWRLRMRGPA*
Ga0134125_122718842	3300010371	Terrestrial Soil	MNSATESAPIHGTEERLRQKELTERLGVMPVRRSKTSNFKWSTWKWRLRMRGGTPA*
Ga0134128_106094972	3300010373	Terrestrial Soil	MNSATESPHGTGQLQRQKELTERLCVLPARRSRAYNWKWSTWKWRLGMRGQATP*
Ga0105239_104810312	3300010375	Corn Rhizosphere	MSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLSWSTWKWRLRMRGKATA*
Ga0134126_103654893	3300010396	Terrestrial Soil	MNPASESPPIHGNEERLRQKMLTERLGVMPVRRSKTSNFKWSTWKWRLRMRGETPA*
Ga0134127_103847821	3300010399	Terrestrial Soil	ERSFKMNSATESPHGTGQLQRQKELTERLCVLPARRSRAHNWKWSTWKWRLGMRGQATP*
Ga0134121_101183013	3300010401	Terrestrial Soil	MNPATESPPIHGTEERLRQKELTERLGVMPVRRSKTSNFKWSTWKWRLRMRGGTPA*
Ga0137365_102280992	3300012201	Vadose Zone Soil	MNSATESPHGAAEQRQKELTERLCVMPVRRRKGTNLKWSTWKWRLGMRGEATP*
Ga0137376_113534472	3300012208	Vadose Zone Soil	MSSATESPHGDAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP*
Ga0137366_106349622	3300012354	Vadose Zone Soil	MNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNLKWSTWKW
Ga0137371_102203091	3300012356	Vadose Zone Soil	MNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNLKWST
Ga0137371_113083272	3300012356	Vadose Zone Soil	MNSATESPPSHGSSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRMRGQ
Ga0164300_100321693	3300012951	Soil	MNSATKSPPSHGTAEGARQKLLTERLGVLPARRTKASNLKWSTWKWRLRMRGPA*
Ga0164300_111364851	3300012951	Soil	MNPATESPPIHGTEERLRQKELTERLGVTPVRRSKTSNFKWSTWKWRLRMRGGTPA*
Ga0164302_101037462	3300012961	Soil	MNSATKSPPSHGTTEGLRQKMLTERLGVMPARRSKGSNLKWSTWKWRLGMRGPA*
Ga0164308_111320862	3300012985	Soil	MNSATESPPSHGTAEGARQKLLTERLGVLPARRTKASNLKWSTWKWRLRMRGPA*
Ga0164304_103310731	3300012986	Soil	PSHGTTEGLRQKMLTERLGVMPARRSKGSNLKWSTWKWRLGMRGPA*
Ga0157378_104602961	3300013297	Miscanthus Rhizosphere	MSSATESPHGNAQLRRQKELTERLCITPVRRGKGHNLNWSTWKWRLRMRGKATA*
Ga0134078_101246312	3300014157	Grasslands Soil	DLFEIFKMNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNLKWSTLKWRLRMRGQA*
Ga0134078_102433423	3300014157	Grasslands Soil	RVFPTLDERSYKMNAMTESPHGGAQMRRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0134078_102783291	3300014157	Grasslands Soil	RSYKMNPATESPQRTAHVRRQKELTQRLGVLPARRSTGTNLKWSTWKRRLGMRGEATS*
Ga0132258_106954492	3300015371	Arabidopsis Rhizosphere	MNAMTESPHGTAQLQRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP*
Ga0184605_100017444	3300018027	Groundwater Sediment	MNSATEPSHGSAQLRRQKELTERLCVMPVRRSKGNNLKWSTWKWRLRMRGEATP
Ga0184605_100289931	3300018027	Groundwater Sediment	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
Ga0184621_100150853	3300018054	Groundwater Sediment	MSSATDSSPGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
Ga0066669_103377792	3300018482	Grasslands Soil	MNAMTESPHGSAQLQRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP
Ga0190267_113426312	3300019767	Soil	MSSATDSSPGNAQLQRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
Ga0193757_10082932	3300020008	Soil	MSTATESPPIHGTEERLRQKELTERLGITPVRRSKTSNFKWSTWKWRLRMRGETPA
Ga0193733_10743662	3300020022	Soil	PIHGTAARLRQKELTERLGVMPVRRSKTSNFKWSTWKWRLRMRGDVAA
Ga0182009_101621531	3300021445	Soil	MNAMTESPHGTAQLRRQKELTERLCITPVRRSKGHNLKWSTWKWRLGMRGEATP
Ga0222621_11313332	3300021510	Groundwater Sediment	VFPTLAERSYTMSSATDSSPGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
Ga0222624_12265551	3300021951	Groundwater Sediment	MNPVTESPPIHGTAERLRQKELTERLGVMPVRRSKTSNFKWSTWKWRLRMRGDVAA
Ga0207699_110648981	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKATA
Ga0207684_110464962	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLRMRGKTTA
Ga0207663_101160502	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLSWSTWKWRLRMRGKATAS
Ga0207709_105428322	3300025935	Miscanthus Rhizosphere	MNSATESPHGTGQLQRQKELTERLCVLPARRSRAHNWKWNTWKWRLGMRGQATP
Ga0207667_102553684	3300025949	Corn Rhizosphere	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLSWSTWKWRLRMRGKATA
Ga0209468_10058874	3300026306	Soil	MSSPTESPHGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP
Ga0209473_13229593	3300026330	Soil	YKMNPATESPQRTAHVRRQKELTQRLGVLPARRSTGTNLKWSTWKRRLGMRGEATS
Ga0209057_10281233	3300026342	Soil	MNPATESPQRTAHVRRQKELTQRLGVLPARRSTGTNLKWSTWKRRLGMRGEATS
Ga0209161_104818921	3300026548	Soil	IFKMNSATESPPSHGSSERQKQLTQRLGVMPVRRSKGGNLKWSTWKWRLRMRGQA
Ga0209474_100310685	3300026550	Soil	MNSATESPVSGTSERQKQLTQRLGVMPVRRSKAGNLKWSTWKWRLRMRGQA
Ga0209177_103744061	3300027775	Agricultural Soil	MNSATESPAGNAQLQRQKELTERLCVLPARRSKGHNLKWSTWKWRLGMRGEATP
Ga0307293_100105742	3300028711	Soil	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLGMRGKANA
Ga0307307_100281622	3300028718	Soil	MNSATESSHGSAQLRRQKELTERLCVMPVRRSKGNNLKWSTWKWRLRMRGEATP
Ga0307282_100113344	3300028784	Soil	MSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWRWRLRMRGKATA
Ga0307282_100378623	3300028784	Soil	MSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLGMRGKATA
Ga0307277_100069235	3300028881	Soil	MSPATESPHGNAQLQRQKELTERLCITPVRRSKGTNLKWSTWKWRLRMRGEATP
Ga0307277_100069281	3300028881	Soil	MSSATESPHGSAQLRRQKELTERLCITPVRRSKGTNLKWSTWKWRLGMRGEATP
Ga0307277_100759142	3300028881	Soil	MNSATESPHGSTELRRQKELTERLCVMPVRRSKGTNLKWSTWKWRLGMRGEATP
Ga0308202_10919421	3300030902	Soil	MSSATESPPIHGTEERLRQKELTERLGVTPVRRSKGSNFKWSTWKWRLRMRGETPA
Ga0308178_10980301	3300030990	Soil	RVFPTLAERSYTMSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLGMRGKATA
Ga0308194_100331951	3300031421	Soil	PTLAERSYTMSSATESPHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLGMRGKATA
Ga0308186_10217021	3300031422	Soil	VFPTLAERSYTMSSATDSSHGNAQLRRQKELTERLCITPVRRSKGHNLNWSTWKWRLGMRGKATA
Ga0308175_1022185891	3300031938	Soil	MSSATESPHGSAQLQRQKELTERLCITPVRRSKGTNLKWSTWKWRFGMRGEATP
Ga0310810_102498633	3300033412	Soil	MNSATESPHGTAQLQRQKELTERLCVVPAQRSSAHNLKWSTWKWRLGMRGEATP
Ga0370544_24109_193_363	3300034447	Soil	MNPVTESPPIHGTAERLRQKELTERLGVMPVRRSKTSNFKWSTWKWRLRMRGETPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083162

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences