Metagenome / Metatranscriptome Family F083330

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083330
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	MGGQKSLGFVFGIALAIGVVLAVTTWAASPKPQSDSAAAAKATIYRPALWKVY
Number of Associated Samples	87
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.97 %
% of genes near scaffold ends (potentially truncated)	32.74 %
% of genes from short scaffolds (< 2000 bps)	82.30 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.062 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.124 % of family members)
Environment Ontology (ENVO)	Unclassified (31.858 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.407 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.51% β-sheet: 0.00% Coil/Unstructured: 60.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04392	ABC_sub_bind	4.42
PF13365	Trypsin_2	4.42
PF02371	Transposase_20	1.77
PF13531	SBP_bac_11	1.77
PF03401	TctC	0.88
PF00072	Response_reg	0.88
PF00497	SBP_bac_3	0.88
PF07221	GlcNAc_2-epim	0.88
PF13592	HTH_33	0.88
PF06411	HdeA	0.88
PF13545	HTH_Crp_2	0.88
PF13714	PEP_mutase	0.88
PF02668	TauD	0.88
PF05974	DUF892	0.88
PF07969	Amidohydro_3	0.88
PF07995	GSDH	0.88
PF13779	DUF4175	0.88
PF17158	MASE4	0.88
PF14534	DUF4440	0.88
PF02518	HATPase_c	0.88
PF01068	DNA_ligase_A_M	0.88
PF13185	GAF_2	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.42
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.77
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.88
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.88
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.88
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.88
COG2942	Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family	Carbohydrate transport and metabolism [G]	0.88
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.88
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.06 %
Unclassified	root	N/A	38.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	48.67 %
Unclassified	root	N/A	38.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.77 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.88 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.88 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	40.71 %
Unclassified	root	N/A	38.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.77 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.58 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.58 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	3.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.58 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	3.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.58 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.58 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.77 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2040502001\|FACENC_GAMC6GA01BQYVR	Not Available	519	Open in IMG/M
2170459013\|GO6OHWN02HVA9I	Not Available	508	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11060760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300000550\|F24TB_12224407	Not Available	567	Open in IMG/M
3300000559\|F14TC_104998652	Not Available	533	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1051905	Not Available	598	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10079302	Not Available	824	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1058712	Not Available	511	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1018430	Not Available	1323	Open in IMG/M
3300000956\|JGI10216J12902_116884078	Not Available	773	Open in IMG/M
3300001431\|F14TB_100917429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1098	Open in IMG/M
3300004268\|Ga0066398_10080084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300004633\|Ga0066395_10739447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300005167\|Ga0066672_10315847	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300005167\|Ga0066672_10331152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	993	Open in IMG/M
3300005180\|Ga0066685_10350137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1025	Open in IMG/M
3300005186\|Ga0066676_10418414	All Organisms → cellular organisms → Bacteria → Proteobacteria	905	Open in IMG/M
3300005332\|Ga0066388_102985136	Not Available	864	Open in IMG/M
3300005332\|Ga0066388_105181235	Not Available	662	Open in IMG/M
3300005332\|Ga0066388_105819322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300005434\|Ga0070709_10732364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300005436\|Ga0070713_100213094	Not Available	1750	Open in IMG/M
3300005439\|Ga0070711_102081600	Not Available	500	Open in IMG/M
3300005450\|Ga0066682_10507337	Not Available	764	Open in IMG/M
3300005471\|Ga0070698_100284295	All Organisms → cellular organisms → Bacteria → Proteobacteria	1585	Open in IMG/M
3300005471\|Ga0070698_101850769	Not Available	556	Open in IMG/M
3300005518\|Ga0070699_101346622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300005574\|Ga0066694_10533619	Not Available	547	Open in IMG/M
3300005713\|Ga0066905_101056218	Not Available	719	Open in IMG/M
3300005713\|Ga0066905_101104726	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005713\|Ga0066905_101324436	Not Available	649	Open in IMG/M
3300005713\|Ga0066905_101417768	Not Available	629	Open in IMG/M
3300005764\|Ga0066903_100444994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2161	Open in IMG/M
3300005764\|Ga0066903_100921243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1585	Open in IMG/M
3300005764\|Ga0066903_101495881	Not Available	1274	Open in IMG/M
3300005764\|Ga0066903_103582259	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300005764\|Ga0066903_104151549	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005764\|Ga0066903_105385623	Not Available	676	Open in IMG/M
3300005764\|Ga0066903_107797033	Not Available	550	Open in IMG/M
3300005937\|Ga0081455_10530547	Not Available	783	Open in IMG/M
3300006028\|Ga0070717_10041383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3756	Open in IMG/M
3300006031\|Ga0066651_10104644	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300006034\|Ga0066656_10284355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300006046\|Ga0066652_100980629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300006163\|Ga0070715_10112446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1286	Open in IMG/M
3300006173\|Ga0070716_100664320	Not Available	792	Open in IMG/M
3300006791\|Ga0066653_10246027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300006845\|Ga0075421_101429923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	760	Open in IMG/M
3300006904\|Ga0075424_101159973	Not Available	823	Open in IMG/M
3300010046\|Ga0126384_10105853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2086	Open in IMG/M
3300010047\|Ga0126382_11414730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300010325\|Ga0134064_10412748	Not Available	542	Open in IMG/M
3300010361\|Ga0126378_12239798	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300010376\|Ga0126381_103554422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300010863\|Ga0124850_1131386	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300012198\|Ga0137364_10560027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300012199\|Ga0137383_11312688	Not Available	515	Open in IMG/M
3300012200\|Ga0137382_10168922	Not Available	1492	Open in IMG/M
3300012201\|Ga0137365_11145657	Not Available	558	Open in IMG/M
3300012204\|Ga0137374_10124172	Not Available	2367	Open in IMG/M
3300012204\|Ga0137374_10477069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	974	Open in IMG/M
3300012208\|Ga0137376_10933608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	744	Open in IMG/M
3300012208\|Ga0137376_11411612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300012354\|Ga0137366_11058020	Not Available	561	Open in IMG/M
3300012897\|Ga0157285_10245290	Not Available	585	Open in IMG/M
3300012923\|Ga0137359_11084321	Not Available	685	Open in IMG/M
3300012948\|Ga0126375_10317068	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1090	Open in IMG/M
3300012948\|Ga0126375_10416929	Not Available	976	Open in IMG/M
3300012971\|Ga0126369_10258023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1720	Open in IMG/M
3300013297\|Ga0157378_13004027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300015373\|Ga0132257_104104986	Not Available	530	Open in IMG/M
3300016357\|Ga0182032_10080905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2231	Open in IMG/M
3300016357\|Ga0182032_10348229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1185	Open in IMG/M
3300016357\|Ga0182032_10749667	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300018431\|Ga0066655_10041426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2320	Open in IMG/M
3300020579\|Ga0210407_10926933	Not Available	667	Open in IMG/M
3300021405\|Ga0210387_10476462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1109	Open in IMG/M
3300021478\|Ga0210402_10243042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1661	Open in IMG/M
3300021560\|Ga0126371_10088141	All Organisms → cellular organisms → Bacteria	3062	Open in IMG/M
3300021560\|Ga0126371_13900553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300022507\|Ga0222729_1054260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300022525\|Ga0242656_1091519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300022530\|Ga0242658_1214148	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300024288\|Ga0179589_10429213	Not Available	608	Open in IMG/M
3300025915\|Ga0207693_10099726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2277	Open in IMG/M
3300025939\|Ga0207665_10673301	Not Available	812	Open in IMG/M
3300026310\|Ga0209239_1007030	All Organisms → cellular organisms → Bacteria	6218	Open in IMG/M
3300026310\|Ga0209239_1017798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3586	Open in IMG/M
3300026326\|Ga0209801_1220393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300027903\|Ga0209488_10170448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1644	Open in IMG/M
3300031543\|Ga0318516_10005886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5621	Open in IMG/M
3300031543\|Ga0318516_10007309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5158	Open in IMG/M
3300031543\|Ga0318516_10023031	All Organisms → cellular organisms → Bacteria → Proteobacteria	3208	Open in IMG/M
3300031543\|Ga0318516_10403447	Not Available	787	Open in IMG/M
3300031545\|Ga0318541_10031359	All Organisms → cellular organisms → Bacteria → Proteobacteria	2635	Open in IMG/M
3300031545\|Ga0318541_10398297	Not Available	769	Open in IMG/M
3300031572\|Ga0318515_10381051	All Organisms → cellular organisms → Bacteria → Proteobacteria	755	Open in IMG/M
3300031668\|Ga0318542_10614116	Not Available	567	Open in IMG/M
3300031744\|Ga0306918_11222780	Not Available	579	Open in IMG/M
3300031795\|Ga0318557_10034483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	2065	Open in IMG/M
3300031796\|Ga0318576_10084117	All Organisms → cellular organisms → Bacteria → Proteobacteria	1434	Open in IMG/M
3300031819\|Ga0318568_10497599	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031910\|Ga0306923_10677399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1150	Open in IMG/M
3300032025\|Ga0318507_10468608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	548	Open in IMG/M
3300032055\|Ga0318575_10003159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5445	Open in IMG/M
3300032059\|Ga0318533_10982335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300032066\|Ga0318514_10014677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	3456	Open in IMG/M
3300032068\|Ga0318553_10234799	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	957	Open in IMG/M
3300032068\|Ga0318553_10632327	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300032094\|Ga0318540_10005890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4516	Open in IMG/M
3300032261\|Ga0306920_102338302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	739	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.58%
Host-Associated	Host-Associated	4.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.58%
Plants	Host-Associated → Plants	4.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.77%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.26%
Loam	Environmental → Terrestrial → Soil → Loam	28.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.73%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.12%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2040502001	Soil microbial communities from sample at FACE Site 2 North Carolina CO2+	Environmental	Open in IMG/M
2170459013	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis soil at the rocks surface 0-21cm	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCE_4908380	2040502001	Soil	MGQKSLSVFGTFLVVGMVLAITTWAASPKPQSDSVAIAKATNYRPSLWKGY
N57_04735720	2170459013	Grass Soil	MGGQKSLRFVFGIALVVGVVLTVTTWAAPPTPQSDSAVAAKATIHRPAHY
ICChiseqgaiiFebDRAFT_110607602	3300000363	Soil	MCGQKSPRFVFGITLVMIGLVLTVTTWAAPPKSQGASVAVAKGAIYRPALWKVY*
F24TB_122244071	3300000550	Soil	MGGQRKSLKFVFGIALTIGVVLAMTTWAASPKPQSDSVATAKATIYRPNLWKVY*
F14TC_1049986521	3300000559	Soil	MARKSLGFVFGVVLAMGVLLAITTWAASPKPQSDSAGPATGTIYRPALWKVY*
AP72_2010_repI_A01DRAFT_10519052	3300000579	Forest Soil	MLHEEGNMGRKSLRFVFGIFLAIGTVLAITTWAAFPKPQSDSVATAKATIYRPNL*
AF_2010_repII_A1DRAFT_100793022	3300000597	Forest Soil	MGRKSLRFVFAIFLAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY*
AP72_2010_repI_A10DRAFT_10587121	3300000651	Forest Soil	MGRKSLRFVFGIFLAIGTVLAITTWAAFPKPQSDSVATAKATIYRPNL*
AF_2010_repII_A100DRAFT_10184302	3300000655	Forest Soil	MAGQKSLGFVFGIALAFGVVLAMTSWAASPKPQSDSAAAAKPTIYRPAHY*
JGI10216J12902_1168840781	3300000956	Soil	MGGQKSLGFVFGIALAIGVVLAVTTWAASPKPQSDSAAAAKATIYRPALWKVY*
F14TB_1009174293	3300001431	Soil	FVFGVVVALGVFLAITTWAASPKLQSDSAAPAKGTIYRPDLWKVY*
Ga0066398_100800842	3300004268	Tropical Forest Soil	MGRKSLRFVFGTFLAVGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY*
Ga0066395_107394471	3300004633	Tropical Forest Soil	MGRKSLRFVFGIFLAVGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY*
Ga0066672_103158473	3300005167	Soil	MARKSLGFVFGVVLAMGVFVAITTWAASPKPQSGSAAPAKGTIYRPDLWKVY*
Ga0066672_103311523	3300005167	Soil	MGGQKSLGFVFGIALAIGVVLAVTTWAASPKPQGYSAAAAKTTIYRPNLWKVY*
Ga0066685_103501371	3300005180	Soil	MGGQKSLGFVFGIALAIGVVLAVTTWAASPKPQGYSAAAAKTTIY
Ga0066676_104184141	3300005186	Soil	MARKSLGFVFGVVLAMGVFVAITTWAASPKPQSGSAAPAKGTI
Ga0066388_1029851362	3300005332	Tropical Forest Soil	MGGQRSLGFVFGIALLMGVVLAVTTWAASPRPQNDSAVVAKAAIYRPALWKVY*
Ga0066388_1030151341	3300005332	Tropical Forest Soil	MGRKSPRFVFGIFLAIGTVLAITTWAASPTPHSDSVAAAKVY*
Ga0066388_1051812352	3300005332	Tropical Forest Soil	MGRKSLRFVFGIFLMIGTVLAITTWAAPPTSQGYSVATAKATIYRPNLWKVY*
Ga0066388_1058193222	3300005332	Tropical Forest Soil	MCGQRSLGFVFWIALATGVVIAMTTWAASPKPQSDSVAAAKATIYRPALWKVY*
Ga0070709_107323641	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MCGQKSPRFVFGITLMMIGVVLTVTTWAAPPKSQGVSVAVAKEAIYRPAFW*
Ga0070713_1002130944	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLRFVFGIALVVGVVLTVTTWAAPPKPQSVSAAVAKGAIYRPALWKVY*
Ga0070711_1020816002	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QKSLRFVFGIALAFGVLLAMTAAFPKLQSDSASAAKTTIHRPAHY*
Ga0066682_105073372	3300005450	Soil	MDLRQEGDMARKSLGFVFGVVLAMGVLLAITTWAASPKPQSDSAGPATGTIYRPALWKVY
Ga0070698_1002842953	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLGFVFGIALVVGVVLAVTTWAAPPKSQSDPAAVAKSTIYRPALWKVY*
Ga0070698_1018507691	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DMGGQKSLGFAFVIALAIGVFLAVTTWADSPKPQSDSAATAKATIYRPNLWKVY*
Ga0070699_1013466221	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLGFVFGMALAIGVVLALTTWAASPKPQSDSAAAAKATIYRPALW
Ga0066694_105336191	3300005574	Soil	MARKSLGFVFGVVLAMGVFVAITTWAASPKPQSGSAAPAKGTIYRRDLWKVY*
Ga0066905_1010562182	3300005713	Tropical Forest Soil	MCGQRSLGFVFCIVLATGVVIAVTTWAASPKPHSDSVAAAKATVYRPALWKVY*
Ga0066905_1011047261	3300005713	Tropical Forest Soil	MGRKSLRFVFGTFLAIGTVLAITTWAASPKPQSDSVATAKATI
Ga0066905_1013244361	3300005713	Tropical Forest Soil	RFVFGITLVMIGVVLTVTTWAAPPKSQGVSVAVARGAIYQPALWKVY*
Ga0066905_1014177681	3300005713	Tropical Forest Soil	MGRKSLRFVFGIFLAVGTVLAITTWAASPTPQSGSVATAKTTIYRPNLWKVY*
Ga0066903_1004449941	3300005764	Tropical Forest Soil	DMCGQRSLGFVFGIALAFGIVLAMTNWAASPKPQSYSAAAANTTIHRPAHY*
Ga0066903_1009212434	3300005764	Tropical Forest Soil	MGGQKSLGFAFGIALAIGVFLAVTTWAAPPKPQSDSAATAKSTIYRPNLWKVY*
Ga0066903_1014958813	3300005764	Tropical Forest Soil	MGGQRKSLKFVFGIALTIGVVLAMTTWAASPKPQSDSAVAAKAAVYRPALWKVY*
Ga0066903_1035822592	3300005764	Tropical Forest Soil	MGRKSLRFVFGTFVAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY*
Ga0066903_1041515492	3300005764	Tropical Forest Soil	MCGQRSLGFGFWIVLATGVVIAATTWAASPKPQSDSVAAAKATVYRPALWNVY*
Ga0066903_1053856231	3300005764	Tropical Forest Soil	MGGQRSLGFVFRIALAFGVVLAVTTSAASPKPQSDSAVAVKAAIYRPALWKVY*
Ga0066903_1077970331	3300005764	Tropical Forest Soil	MLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKTTIYRPNLWKVY*
Ga0081455_105305471	3300005937	Tabebuia Heterophylla Rhizosphere	MGRKSLRFVFGTFLAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY*
Ga0070717_100413837	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLRFVFGIALAFGVLLAMTAAFPKLQSDSAVAAKTTIHRPAHY*
Ga0066651_101046442	3300006031	Soil	MGGQTSLGFAFGIAFLVRVVLAVTTWAASPKPQSDLAAAAKAAMYRPALWRVS*
Ga0066656_102843551	3300006034	Soil	GIALAIGVVLAVTTWAASPKPQGYSAAAAKTTIYRPNLWKVY*
Ga0066652_1009806292	3300006046	Soil	DMARKSLGFVFGVVVAMGVLLAITTWAASPKLQSDAAAPAKGTIYRPDLWKVY*
Ga0070715_101124463	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLRFVFGIALVVGVVLTVTTWAAPPKPQTASAVVAKGTIYRPALWKVY*
Ga0070716_1006643201	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLRFVFGIALVIGVVLTVTTWAAPPKSQGVSVAVAKGAIYRPALWNVY*
Ga0066653_102460271	3300006791	Soil	ARKSLGFVFGVVLAMGVLLAITTWAASPKPQSDSAGPATGTIYRPALWKVY*
Ga0075421_1014299231	3300006845	Populus Rhizosphere	MCGQRSLRFVFGIALAFGVVLAMTNWAASPKPQSYSAAAANTTIHRPAHY*
Ga0075424_1011599731	3300006904	Populus Rhizosphere	MCGQKSPRFVFGITLVMIGVVLTVTTWAAPPKSQGVSVAVAKEAIYRPAFW*
Ga0126384_101058533	3300010046	Tropical Forest Soil	MGRKSLRFVFGTFLAIGTVLAITTWAASPKPQSDSVVTAKATIYRPNLWKVY*
Ga0126382_114147301	3300010047	Tropical Forest Soil	MCGQRSLGFVFWIALATGVVIAVTTWAASPKPQSDSVAAAKATVYRPALWNVY*
Ga0134064_104127481	3300010325	Grasslands Soil	MGRKSLGFVFGVVVALGVFLAITTWAASPKLQSDSAAPAKGTIYRPDLWKVY*
Ga0126378_122397982	3300010361	Tropical Forest Soil	MGGQRSLGFVFGIALLMGVVLAVTTWAASPRPQSDTAVLAKAAIYRPALWKVY*
Ga0126381_1035544223	3300010376	Tropical Forest Soil	MCGQRSLGFVFWIALATGVVIAVTTWAASPKPQSDSVAAAKATIYRPALWKVY*
Ga0124850_11313861	3300010863	Tropical Forest Soil	LIHANADLLRQEGNMGRKSFRFVFGIFLAVGTVLAITTWAASPTPQSGSVATAKATIYRPNLWKVY*
Ga0137364_105600272	3300012198	Vadose Zone Soil	MARKSLGFVFGVVVAMGVLLAITTWAASPKLQSDSAAPAKGTIYRPDLWKVY*
Ga0137383_113126881	3300012199	Vadose Zone Soil	MGGQKSLGFVFGIALAIGVVLAVTTWAASPKPQGYSAAAAKTTI
Ga0137382_101689224	3300012200	Vadose Zone Soil	MGGHRSLRFVFGIALAFGVVLAMTTWAASPKLQSDSAAAANAKIYRPAHY*
Ga0137365_111456572	3300012201	Vadose Zone Soil	MGGQKSLGFAFGIALAIGVFLAVTTWADSPKPQSDSAAAAKATIYRPNLWKVY*
Ga0137374_101241722	3300012204	Vadose Zone Soil	MARKSLGFVFGVVLAMGVFLAITTWAASPKPQSDSAASAKGTIYRPDLWKVY*
Ga0137374_104770692	3300012204	Vadose Zone Soil	MARKSLGFVFGVVLAMGVFLAITTWAASPKLQSDSAAPAKGTIYRPDLWKVY*
Ga0137376_109336081	3300012208	Vadose Zone Soil	MARKSLGFVFGVVVAMGVLLAITTWAASPKLQSDAAAPAKGTIYRPDLWKVY*
Ga0137376_114116121	3300012208	Vadose Zone Soil	MARKSLGFVFGVVLAMGVLLAITTWAASPKPQSDSAGPATGTIYRPDLWKVY*
Ga0137366_110580201	3300012354	Vadose Zone Soil	TIDLRQEGDMARKSLGFVFGVVLAMGVLLAITTWAASPKPQSDSAGPATGTIYRPALWKVY*
Ga0157285_102452901	3300012897	Soil	REGEMGGQKSLRFVFGIALAFGVLLAMTAAFPKLQSDSAVAAKTTIHRPAHY*
Ga0137359_110843212	3300012923	Vadose Zone Soil	MGGQKSHGFAFGIALAIGVFLAVTTWADSPKPQSDSAAAAKATIYRPNLWKVY*
Ga0126375_103170681	3300012948	Tropical Forest Soil	MGRKSLTFVFWIFLAIGTVLAITTWAASPKPQSDSAVAAKAAVYRPALWKVY*
Ga0126375_104169291	3300012948	Tropical Forest Soil	MGRKSLRFVFGIFLAVGTVLAITTWAASPTPQSGSVATAKATIYRPNLWKVY*
Ga0126369_102580235	3300012971	Tropical Forest Soil	MCGQRSLGFVFWIALATGVVIAMTTWAASPNPQSDSVAAAKATVYRPALWNVY*
Ga0157378_130040271	3300013297	Miscanthus Rhizosphere	MGGQKSLRFAFGIALVIGVVLTVTTWAVPPTPQSDSAMAAK
Ga0132257_1041049862	3300015373	Arabidopsis Rhizosphere	MCGQRSLRFVFGIALAFGVVLAMTNWAASPKPQSYSAAAANTTIH
Ga0182032_100809051	3300016357	Soil	MGRKSLRFVFGIFVVIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWK
Ga0182032_103482292	3300016357	Soil	CQRDMLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0182032_107496673	3300016357	Soil	FGTFLAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0066655_100414265	3300018431	Grasslands Soil	MGGQKSLGFVFGIALAIGVVLAVTTWAASPKPQGYSAAAAKTTIYRPNLWKVY
Ga0210407_109269331	3300020579	Soil	MGGQKSLGFVFGIALMIGVVLAVTTWAAPPKPQGDSVAAAKAAIYRPPLWKVY
Ga0210387_104764621	3300021405	Soil	MGGQKSLRFAFGIALVIGVVLTVTTWAAPPTPQRDSAVAAKATIHRPAHY
Ga0210402_102430423	3300021478	Soil	MSSMREGEMGGQKSLRFAFGIALVIGVVLTVTTWAAPPTPQSDSAVAAKATIHRPAHY
Ga0126371_100881414	3300021560	Tropical Forest Soil	MGRKSLRFVFGTFLAVGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0126371_139005532	3300021560	Tropical Forest Soil	MGGQRSLGFVFGIALLIGVVLAVTTWAASPRPQNDSAVVAKAAIYRPALWKVY
Ga0222729_10542602	3300022507	Soil	EMGGQKSLRFAFGIALVIGVVLTVTTWAAPPTPQSDSAVAAKATIHRPAHY
Ga0242656_10915191	3300022525	Soil	MGGQKSLRFAFGIALVIGVVLTVTTWAAPPTPQSDSAVAAKATIHRPAHY
Ga0242658_12141481	3300022530	Soil	SLRFVFGIALAFGVVLAMTAAFPKLQSDSAAAAKTTIQRPAHY
Ga0179589_104292132	3300024288	Vadose Zone Soil	MGGQKSLGFVFGIALMIGVVLAVTTWAAPPKPQGDSVAAAKGSDLPT
Ga0207693_100997265	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLRFVFGIALVVGVVLTVTTWAAPPKPQSVSAAVAKGAIYRPALWKVY
Ga0207665_106733012	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MGGQKSLRFVFGIALVIGVVLTVTTWAAPPKSQGVSVAVAKGAIYRPALWNVY
Ga0209239_100703010	3300026310	Grasslands Soil	MARKSLGFVFGVVLAMGVFVAITTWAASPKPQSGSAAPAKGTIYRPDLWKVY
Ga0209239_10177989	3300026310	Grasslands Soil	MARKSLGFVFGVVLAMGVLLAITTWAASPKPQSDSAGPATGTIYRPALWKVY
Ga0209801_12203931	3300026326	Soil	GGQKSLGFVFGIALAIGVVLAVTTWAASPKPQGYSAAAAKTTIYRPNLWKVY
Ga0209488_101704483	3300027903	Vadose Zone Soil	MGGQKSLGFVFGIALMIGVVLAVTTWAAPPKPQGDSVAAAKAAIYRPALWKVY
Ga0318516_100058866	3300031543	Soil	MGRKSLRFVFGIFLAVGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0318516_100073092	3300031543	Soil	MGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0318516_100230317	3300031543	Soil	MGRKSRRFVFGIFLAVGTVLAITTWAASPTPQSGSVATAKATIYRPNLWKVY
Ga0318516_104034472	3300031543	Soil	MGRKSLRFVFGIFVAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0318541_100313593	3300031545	Soil	MDLLHQEGNMGRKSLRFVFGIFVAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKV
Ga0318541_103982971	3300031545	Soil	MSGQRKSLKFVFGIALTIGVVLAMTTWAASPKPQSDSAVAAKAAVYRPALWKVY
Ga0318515_103810511	3300031572	Soil	HGNMDLLHQEGNMGRKSLRFVFGIFVAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0318542_106141161	3300031668	Soil	MSGQRKSLKFVFGIALTIGVVLAITTWAASPKPQSDSAVAAKAAVYRPALWKVY
Ga0306918_112227801	3300031744	Soil	MGRKSLRFVFGIFLAVGTVLAITTWAASPTPQSGSVATAKATIYRPNLWKVY
Ga0318557_100344833	3300031795	Soil	CDGCHRLCFVFPLIHANTDLLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0318576_100841171	3300031796	Soil	MGRKSLRFVFGIFVAIGTVLAITTWAASPKPQSDSVATAKAT
Ga0318568_104975993	3300031819	Soil	DMLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0306923_106773991	3300031910	Soil	MGRKSLRFVFGTFLAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKV
Ga0318507_104686081	3300032025	Soil	GNTDLLHQEGNMGRKSLRFVFGIFVAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0318575_100031592	3300032055	Soil	MGRKSLRFVFGTFLAIGTVLAITTWAASPKPQSDSVATAKATIYRPNLWKVY
Ga0318533_109823352	3300032059	Soil	MGQKSLRFVFGTFLAVGMVLAITTWAASPKPQSDSVAIAKATNYRPSLWKVH
Ga0318505_104009543	3300032060	Soil	MGRKSRRFVFGIFLAVGTVLAITTWAASPTPQSGS
Ga0318514_100146771	3300032066	Soil	LKCDGCHRLCFVFPLIHANTDLLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0318553_102347992	3300032068	Soil	IHANTDLLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0318553_106323272	3300032068	Soil	SLRFVFGIFLAVGTVLAITTWAASPTPQSGSVATAKATIYRPNLWKVY
Ga0318540_100058905	3300032094	Soil	RLCFVFPLIHANTDLLHEEGNMGRKSLRFVFGTFLAIGTVLAITTWAASPTPRSDSVATAKATIYRPNLWKVY
Ga0306920_1023383021	3300032261	Soil	FPLIRANTDLLHQEGNMGQKSLRFVFGTFLAVGMVLAITTWAASPKPQSDSVAIAKATNYRPSLWKVH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083330

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences