Metagenome / Metatranscriptome Family F083346

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083346
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	53 residues
Representative Sequence	VHWLVPGERIAAGLRELGLQAPLLQAESAEDQDLVAALIRWRSSVSGA
Number of Associated Samples	91
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	92.04 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.106 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.549 % of family members)
Environment Ontology (ENVO)	Unclassified (34.513 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.637 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.53% β-sheet: 0.00% Coil/Unstructured: 64.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00970	FAD_binding_6	46.02
PF00175	NAD_binding_1	45.13
PF01656	CbiA	3.54
PF01678	DAP_epimerase	2.65
PF01370	Epimerase	0.88
PF04340	DUF484	0.88
PF07920	DUF1684	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0253	Diaminopimelate epimerase	Amino acid transport and metabolism [E]	2.65
COG3159	Uncharacterized conserved protein YigA, DUF484 family	Function unknown [S]	0.88
COG3358	Uncharacterized conserved protein, DUF1684 family	Function unknown [S]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.11 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	71.68 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	40.71 %
Unclassified	root	N/A	23.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	17.70 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	4.42 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	17.70 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	4.42 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	17.70 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	2.65 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	1.77 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	23.89 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	17.70 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2.65 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1.77 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10182702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	847	Open in IMG/M
3300002245\|JGIcombinedJ26739_100573766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1005	Open in IMG/M
3300004082\|Ga0062384_100512259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	797	Open in IMG/M
3300004082\|Ga0062384_101247132	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300004082\|Ga0062384_101472191	Not Available	503	Open in IMG/M
3300004092\|Ga0062389_102705644	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300004092\|Ga0062389_102757402	Not Available	655	Open in IMG/M
3300004092\|Ga0062389_104284481	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300004635\|Ga0062388_102052781	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300005546\|Ga0070696_101506644	All Organisms → cellular organisms → Bacteria → Proteobacteria	576	Open in IMG/M
3300005921\|Ga0070766_10307991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1019	Open in IMG/M
3300005921\|Ga0070766_10509620	Not Available	800	Open in IMG/M
3300006086\|Ga0075019_10816941	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300014159\|Ga0181530_10418636	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300017943\|Ga0187819_10305033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	925	Open in IMG/M
3300018008\|Ga0187888_1202547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	787	Open in IMG/M
3300018020\|Ga0187861_10286601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	709	Open in IMG/M
3300018035\|Ga0187875_10550723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	610	Open in IMG/M
3300018047\|Ga0187859_10831753	Not Available	531	Open in IMG/M
3300018062\|Ga0187784_10792105	All Organisms → cellular organisms → Bacteria → Proteobacteria	757	Open in IMG/M
3300019886\|Ga0193727_1174916	Not Available	557	Open in IMG/M
3300019999\|Ga0193718_1018797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1534	Open in IMG/M
3300020021\|Ga0193726_1013602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4296	Open in IMG/M
3300020021\|Ga0193726_1360572	Not Available	529	Open in IMG/M
3300020199\|Ga0179592_10255459	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300020579\|Ga0210407_10308419	All Organisms → cellular organisms → Bacteria → Proteobacteria	1236	Open in IMG/M
3300020579\|Ga0210407_11484828	Not Available	500	Open in IMG/M
3300020580\|Ga0210403_10749126	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300020581\|Ga0210399_10451622	All Organisms → cellular organisms → Bacteria → Proteobacteria	1070	Open in IMG/M
3300021086\|Ga0179596_10124492	All Organisms → cellular organisms → Bacteria → Proteobacteria	1201	Open in IMG/M
3300021168\|Ga0210406_10156080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1913	Open in IMG/M
3300021168\|Ga0210406_10444397	All Organisms → cellular organisms → Bacteria → Proteobacteria	1033	Open in IMG/M
3300021170\|Ga0210400_10115695	All Organisms → cellular organisms → Bacteria → Proteobacteria	2136	Open in IMG/M
3300021178\|Ga0210408_10906081	Not Available	686	Open in IMG/M
3300021181\|Ga0210388_10231781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1619	Open in IMG/M
3300021181\|Ga0210388_10333267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1334	Open in IMG/M
3300021401\|Ga0210393_10036073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3872	Open in IMG/M
3300021401\|Ga0210393_10303085	All Organisms → cellular organisms → Bacteria → Proteobacteria	1298	Open in IMG/M
3300021401\|Ga0210393_11389248	All Organisms → cellular organisms → Bacteria → Proteobacteria	561	Open in IMG/M
3300021402\|Ga0210385_10154461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1644	Open in IMG/M
3300021405\|Ga0210387_10412169	All Organisms → cellular organisms → Bacteria → Proteobacteria	1198	Open in IMG/M
3300021407\|Ga0210383_10741458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	843	Open in IMG/M
3300021407\|Ga0210383_10875301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	766	Open in IMG/M
3300021407\|Ga0210383_11617836	Not Available	533	Open in IMG/M
3300021411\|Ga0193709_1099180	Not Available	627	Open in IMG/M
3300021420\|Ga0210394_10214936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1678	Open in IMG/M
3300021432\|Ga0210384_11408559	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300021433\|Ga0210391_10195478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1591	Open in IMG/M
3300021474\|Ga0210390_10555446	Not Available	965	Open in IMG/M
3300021475\|Ga0210392_10190685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1425	Open in IMG/M
3300021477\|Ga0210398_10331268	All Organisms → cellular organisms → Bacteria → Proteobacteria	1242	Open in IMG/M
3300021479\|Ga0210410_10770244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	846	Open in IMG/M
3300024251\|Ga0247679_1004957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2313	Open in IMG/M
3300024275\|Ga0247674_1040998	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300024283\|Ga0247670_1036729	Not Available	881	Open in IMG/M
3300025625\|Ga0208219_1109650	Not Available	623	Open in IMG/M
3300026291\|Ga0209890_10128699	Not Available	857	Open in IMG/M
3300027330\|Ga0207777_1043511	Not Available	804	Open in IMG/M
3300027545\|Ga0209008_1006601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2754	Open in IMG/M
3300027559\|Ga0209222_1067668	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300027568\|Ga0208042_1122162	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300027795\|Ga0209139_10046541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1526	Open in IMG/M
3300027812\|Ga0209656_10018440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4294	Open in IMG/M
3300027812\|Ga0209656_10386183	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300027812\|Ga0209656_10480519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	545	Open in IMG/M
3300027860\|Ga0209611_10060140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2889	Open in IMG/M
3300027889\|Ga0209380_10786011	Not Available	541	Open in IMG/M
3300027908\|Ga0209006_10083142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2848	Open in IMG/M
3300027908\|Ga0209006_11141903	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300028536\|Ga0137415_10608429	Not Available	904	Open in IMG/M
3300028742\|Ga0302220_10156848	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	865	Open in IMG/M
3300028785\|Ga0302201_10233334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	752	Open in IMG/M
3300028808\|Ga0302228_10384760	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300028808\|Ga0302228_10524805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	521	Open in IMG/M
3300028873\|Ga0302197_10230996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	853	Open in IMG/M
3300029883\|Ga0311327_10589890	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300029907\|Ga0311329_10796679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	603	Open in IMG/M
3300029910\|Ga0311369_10735549	Not Available	806	Open in IMG/M
3300029943\|Ga0311340_11299353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	580	Open in IMG/M
3300029951\|Ga0311371_12014099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	612	Open in IMG/M
3300029987\|Ga0311334_10169115	All Organisms → cellular organisms → Bacteria → Proteobacteria	1659	Open in IMG/M
3300029993\|Ga0302304_10325464	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300030045\|Ga0302282_1098019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1218	Open in IMG/M
3300030058\|Ga0302179_10476807	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300030503\|Ga0311370_11624752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	668	Open in IMG/M
3300030503\|Ga0311370_12408304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	509	Open in IMG/M
3300030507\|Ga0302192_10060327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1895	Open in IMG/M
3300030509\|Ga0302183_10415914	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300030519\|Ga0302193_10604943	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300030520\|Ga0311372_11411586	Not Available	867	Open in IMG/M
3300030580\|Ga0311355_10014188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	10158	Open in IMG/M
3300030693\|Ga0302313_10181562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	851	Open in IMG/M
3300030738\|Ga0265462_12258946	Not Available	537	Open in IMG/M
3300030813\|Ga0265750_1020043	Not Available	849	Open in IMG/M
3300030855\|Ga0075374_10833753	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300031028\|Ga0302180_10199225	All Organisms → cellular organisms → Bacteria → Proteobacteria	1078	Open in IMG/M
3300031028\|Ga0302180_10290581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	846	Open in IMG/M
3300031057\|Ga0170834_104934018	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300031231\|Ga0170824_115113628	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300031231\|Ga0170824_121290589	Not Available	814	Open in IMG/M
3300031232\|Ga0302323_102961636	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300031234\|Ga0302325_12721930	Not Available	582	Open in IMG/M
3300031236\|Ga0302324_102172209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	690	Open in IMG/M
3300031236\|Ga0302324_103528315	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300031474\|Ga0170818_103541964	Not Available	661	Open in IMG/M
3300031595\|Ga0265313_10320276	Not Available	619	Open in IMG/M
3300031671\|Ga0307372_10590885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	500	Open in IMG/M
3300031708\|Ga0310686_111778539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1513	Open in IMG/M
3300031718\|Ga0307474_11446715	Not Available	541	Open in IMG/M
3300031823\|Ga0307478_11592596	Not Available	539	Open in IMG/M
3300031823\|Ga0307478_11748265	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300032174\|Ga0307470_10778841	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300034125\|Ga0370484_0105553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	737	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.23%
Host-Associated	Host-Associated	1.77%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.30%
Aquatic	Environmental → Aquatic	15.93%
Plants	Host-Associated → Plants	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.52%
Peat	Environmental → Terrestrial → Peat	24.78%
Freshwater	Environmental → Aquatic → Freshwater	15.04%
Sediment	Environmental → Aquatic → Sediment	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%
Peat Moss	Host-Associated → Plants → Peat Moss	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.13%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	24.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.04%
Loam	Environmental → Terrestrial → Soil → Loam	8.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%
Clay	Environmental → Terrestrial → Soil → Clay	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	24.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.77%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	16.81%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.19%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.31%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.42%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.65%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.77%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.89%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024275	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK15	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028785	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300029883	I_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300030045	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_3	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030507	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_2	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101827022	3300001356	Peatlands Soil	AYFERVHWLVASARVAESLGKSGLRAPLVQAASAEDHDLVAALIRWRSSVSGA*
JGIcombinedJ26739_1005737662	3300002245	Forest Soil	VHWLVPGERIAAGLRERGLSSPLLLAESAEDHDLVAALVRWRSSVSGA*
Ga0062384_1005122592	3300004082	Bog Forest Soil	ALLELAPQKLRSEFERVHWLVPGARIAAGLRERGLKAPLLQAESAEDQDLVAALLRWRSSVSGA*
Ga0062384_1012471321	3300004082	Bog Forest Soil	RSEFERVHWLVPGERIAAGVRDRGLSAPLLVAASAEDQELVAALIRWRSSVSGA*
Ga0062384_1014721911	3300004082	Bog Forest Soil	NLLGFAPPEMRRAFEQVHWVIPSERIAAGLRELGLDAPLLLSSSAEDQDLVSALIRWRASTSGA*
Ga0062389_1027056442	3300004092	Bog Forest Soil	PGARVAAAVRERGLSAPLVQAESAEDQDLVAALVRWRASASGE*
Ga0062389_1027574021	3300004092	Bog Forest Soil	RAHWLVPGERIAAGVRERGLSAPLLLAASAEDHDLVAALLRWRSSVSGA*
Ga0062389_1042844811	3300004092	Bog Forest Soil	NLLEMATPELRDEFERVHWLVPGERIAAGIREGGVSAPLLQADSAEDQDLVAALLRWRSSESGA*
Ga0062388_1020527811	3300004635	Bog Forest Soil	ERVHWLVPGARIASGLRAGGLQAPLLQAESAEDQDLVAALIRWRSSVSGA*
Ga0070696_1015066442	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	EFERVHWLVPGARVAAGLRELGLSAPLLQAASAEDHDLVAALLAWRAAESGA*
Ga0070766_103079912	3300005921	Soil	ATPGLRSEFERAHWLVPGERVAVGVRDLGLSAPLLRAESAEDQDLVTALVRWRSSESGA*
Ga0070766_105096201	3300005921	Soil	FERAHWLVPGKRVAAGLRELGLKAPLLQADSAEDQDLAAALIRWRSSVSGA*
Ga0075019_108169411	3300006086	Watersheds	ALATPALRVHFERVHWLVPSARVAAGLRDRGLQAPLLQAASAEDQALLEELLRWRSAASGA*
Ga0181530_104186361	3300014159	Bog	VITATSVEIAASLLELATPALRKDFERAHWVVPGARIAQSLRERGLPGVLLQADSAEDQDLVAAIIRWRATESGA*
Ga0187819_103050331	3300017943	Freshwater Sediment	TSVEIGINLLELATPALRSGFEGVPWVVPGARVATSLRERGLSAPVLQAESAEDHDLVAAIVRWRSSESGA
Ga0187888_12025471	3300018008	Peatland	SLLATATPAVRREFNRVHWLVPGARVAAALRERGVTAPILQADTAEDQDLVAAIIRWRSCASGA
Ga0187861_102866011	3300018020	Peatland	ARVAESLGKSGLRAPLVQAASAEDHDLVTALIRWRSSVSGA
Ga0187875_105507231	3300018035	Peatland	YFERAHWLVPSARVAESLGKSGLRAPLVQAASAEDHDLVTALIRWRSSVSGA
Ga0187859_108317532	3300018047	Peatland	VPGERIAAGVRDLGLSAPLLRAESAEDQDLVTALIRWRSSVSGA
Ga0187784_107921051	3300018062	Tropical Peatland	IGAALLGTPHASLRRELDHVHWVVPGSRVAAILRERGLAAPLLHAESAEDHDLVAAILRWRSSVSGA
Ga0193727_11749162	3300019886	Soil	RNLLDMATPELRGEFERVHWLVPGERIAAGLRELGLQAPLLQAESAEDQDLVAALIRWRSSVSGA
Ga0193718_10187973	3300019999	Soil	LRAEFERAHWLVPGERVAAGLRALGLQAPQLVADSAEDQDLVAALVRWRSTVSGA
Ga0193726_10136026	3300020021	Soil	VHWLVPGERIAAGLRELGLQAPLLQAESAEDQDLVAALIRWRSSVSGA
Ga0193726_13605721	3300020021	Soil	RNLLDMATPELRGEFERVHWLVPGERIAAGLRELGMQAPLLQAESAEDQDLVTALIRWRSSVSGA
Ga0179592_102554592	3300020199	Vadose Zone Soil	IAAGLRERGLSSPLLQAESAEDHDLVAALVRWRSSVSGA
Ga0210407_103084191	3300020579	Soil	ERIAAGLRELGIQAPLLRAESAEDQDLVTALIRWRSSVSGA
Ga0210407_114848281	3300020579	Soil	LRGEFERVHWLVPGERIAAGLRELGLQAPLLQAQSAEDQDLVTALIRWRSSVSGA
Ga0210403_107491262	3300020580	Soil	VHWLVPGARIAAGLRERRLMAPLLQAESAEDQDLVAALIRWRSSVSGA
Ga0210399_104516222	3300020581	Soil	RIAAGLRERGLKAPLLQAESAEDQDLVAALLRWRSSVSGA
Ga0179596_101244922	3300021086	Vadose Zone Soil	WLVPGDRVAAALRERGVSGPVLKASTAEDQDLVAAVVRWRSSESGA
Ga0210406_101560803	3300021168	Soil	LELRGEFERVHWLVPGERVATGLRELGLKAPLLKADSAEDQDLVAALLRWRSSVSGA
Ga0210406_104443972	3300021168	Soil	PGERIAYGLRELGMPAPVVQADSADDHDLVAALILWRSIVSGA
Ga0210400_101156951	3300021170	Soil	NLLVIAGSALRDEFERVHWLVPGERIAHGLRELGLAAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0210408_109060811	3300021178	Soil	GLRELGLKAPLLQADSAEDQDLVAALIRWRSSVSGA
Ga0210388_102317811	3300021181	Soil	DIAASLLVIAGSTLRDEFERVHWLVPGERIAHGLRELGLAAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0210388_103332673	3300021181	Soil	ELRCEFERVHWVVPGERIASGLRELGLKAPLLQARSAEDQDSVTALIRWRTSVSGA
Ga0210393_100360736	3300021401	Soil	DLAPLEPASPDLRGEFERAHWLVPGERVAMGLRELGLKAPLLCADSAEDQDLAAALIRWRSSVSGA
Ga0210393_103030852	3300021401	Soil	ASLLKLAPLGLRNEFERVHWLVPGGRVATGLRELGLQAPLLKADSAEDQDLVAALVRWRSSVSGA
Ga0210393_113892482	3300021401	Soil	VAAGVRECGLSAPLLQAESAEDQDLVAALVRWRSSASGA
Ga0210385_101544611	3300021402	Soil	LVPGERVAAGLRGLGLSAPLLAAASAEDHDLVAALLRWRASESGA
Ga0210387_104121691	3300021405	Soil	ATPALRDEFERVHWLVPGERIAAGLRERGLSSPLLQAESAEDHDLVAALVRWRSSVSGA
Ga0210383_107414581	3300021407	Soil	IAHGLRELGLAAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0210383_108753012	3300021407	Soil	LRQRGLNAPLLQAESAEDQDLVAALLRWRSSVSGA
Ga0210383_116178362	3300021407	Soil	ALRSEFERAHWLVPGERIAAGVRELGLSAPLLRADSAEDQDLVTALIRWRSSVSGA
Ga0193709_10991801	3300021411	Soil	GLRELGLQAPLLQAESAEDQDLVAALIRWRSSVSGA
Ga0210394_102149361	3300021420	Soil	RSDFERVHWLVPGARIAAGLRQRGLNAPLLQAESAEDQDLVAALLRWRSSVSGA
Ga0210384_114085591	3300021432	Soil	LAGALLELAPPELRREFERVHWLVPGERIASGLRERGLKAPLLQADSAEDQDLLAALVRWRSSVSGA
Ga0210391_101954781	3300021433	Soil	DIAANLLAIAGSALRDEFERVHWLVPGERIAHGLRELGLAAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0210390_105554462	3300021474	Soil	GAAAPELRDEFERAHWLVPAERVASGLRELGLKAPVLLADSAEDQDLAAALVRWRASVSEAGSKES
Ga0210392_101906853	3300021475	Soil	ILDIGESLLKMVPPELRAEFERVHWLVPGERVAAGLRALGLQAPLLQAESAEDQDLVAALIRWRSSVSGA
Ga0210398_103312682	3300021477	Soil	GEFERVHWLVPGARIAAGVRECGLSAPLLQAESAEDQDLVAALVRWRSSASGA
Ga0210410_107702442	3300021479	Soil	PGERIAHGLRELGLAAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0247679_10049571	3300024251	Soil	PGGRVASAVRDLGVAAPLLQAESAEDQALVDALLRWRSSASGA
Ga0247674_10409981	3300024275	Soil	ERVHWLVPGGRVASAVRDLGVAAPLLQAESAEDQALVDALLRWRSSASGA
Ga0247670_10367291	3300024283	Soil	PALRSEFERVHWLVPGGRVASAVRDLGVAAPLLQAESAEDQALVDALLRWRSSASGA
Ga0208219_11096501	3300025625	Arctic Peat Soil	PGERIAHGLRELGVPAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0209890_101286991	3300026291	Soil	AAAVRALGVTAPILQADSAEDHDLVAAILRWRGEGSGA
Ga0207777_10435112	3300027330	Tropical Forest Soil	PEMRQEFERVHWLVPGPRIASALTELGLRAPLLEAASAEDQDLVAALIRWRSSVSGA
Ga0209008_10066014	3300027545	Forest Soil	VPGARIAAGVRECGLSAPLLQAESAEDQDLVAALLRWRSSASGA
Ga0209222_10676682	3300027559	Forest Soil	WLVPGTRIAAGVRECGLSAPLLQAESAEDQDLVAALLRWRSSASGA
Ga0208042_11221622	3300027568	Peatlands Soil	AVRREFNRVHWLVPGARVAAALRERGVTAPILQADTAEDQDLVAAIIRWRGCASGA
Ga0209139_100465412	3300027795	Bog Forest Soil	TPGLRAEFERVHWLVPGERVASGVRERGLSAPLIQAESAEDHDLVAALLRWRSSESGA
Ga0209656_100184406	3300027812	Bog Forest Soil	LRVDFERVHWLVPSARVAESLVKLGLGAPLIEADSADDQDLVAALIRWRSSESGA
Ga0209656_103861831	3300027812	Bog Forest Soil	LELATPALRSGFEAVHWVVPGARVAASMRERGLSAPVLQAASAEDHDLVAAVVRWRSSESGA
Ga0209656_104805191	3300027812	Bog Forest Soil	AALRAHFERAHWVVPGARVAAALRARGLPATVIEADSAEDQDLVAALVRWRSSESGA
Ga0209611_100601401	3300027860	Host-Associated	GLRARGLAAPLLCADSAEDHDLVDALKRWRASVSGA
Ga0209380_107860112	3300027889	Soil	LLVIAGSTLRDEFERVHWLVPGERIAHGLRELGLAAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0209006_100831421	3300027908	Forest Soil	IAASLLEMATPALRHEFERAHWLVPGERIAAGLRELALTAPLLLAESAEDHDLVAALLRWRSSESGA
Ga0209006_111419031	3300027908	Forest Soil	ALGLRELGMLAPVLQARSAEDQDLVTTLIRWRSSVSGA
Ga0137415_106084291	3300028536	Vadose Zone Soil	PALRDEFERAHWLVPGERIAAGLRELGLLSPLVQAESAEDHDLVAALIRWRVSGA
Ga0302220_101568482	3300028742	Palsa	SLLGMAGPALRGEFERVHWLVPGARVAAGVRKCGLSAPLLQAESAEDQDLVAALVRWRSSASGA
Ga0302201_102333342	3300028785	Bog	VAHGVRELGLRAPLVQAGSARDQDLVAALLRWRSSTSGA
Ga0302228_103847602	3300028808	Palsa	ERVHWLVPGERIAAGVREYGLAAPLLSSASAEDHDLVSALIRWRASASGA
Ga0302228_105248052	3300028808	Palsa	GERVAAGLRELGLKAPLLQADSAEDQDLAAALIRWRSSVSSA
Ga0302197_102309961	3300028873	Bog	AETAAGLLQIPDADLRRELERAHWLVPGARVAGALRASGLEAPILQAESAEDHDLVAAIVRWRSSASGA
Ga0311327_105898902	3300029883	Bog	LRSEFERVHWLVPGERVAAGVRELGLAAPLLSATSADDQDLVSALVRWRSTVSGA
Ga0311329_107966792	3300029907	Bog	ANLLAMATPTLRAALDGLHWLVPSERVTAGLRRDGLSAPVLQADSAEDQDLVAALVRWRSSVSGA
Ga0311369_107355492	3300029910	Palsa	VHWLVPAQRIAEGLRERGLNAPLLQSDSAEDQDLVSALIRWRSSVSGA
Ga0311340_112993531	3300029943	Palsa	NLLAFATPALRAQFERVHWVVPGERVARSLRERGLPAPVLQAGSALDQDLVEAIVRWRASESGA
Ga0311371_120140992	3300029951	Palsa	SEFERAHWLVPGERVAAGVREAGLSAPLLRAESAEDQDLVAALVRWRSSESGA
Ga0311334_101691151	3300029987	Fen	GLLDIANPALRRELDHVHWLVPGVRVAAALRERGVSAPILQATTADDQALVAAVVRWRSSASGA
Ga0302304_103254641	3300029993	Palsa	GEFERVHWLVPGARVAAGVRKCGLSAPLLQAESAEDQDLVAALVRWRSSASGA
Ga0302282_10980191	3300030045	Fen	RELERAHWLVPGARVAGALRASGLEAPILQAESAEDHDLVAAIVRWRSSASGA
Ga0302179_104768071	3300030058	Palsa	APLELRGEFERAHWLVPGERVAAGLRELGLNAPLLQADSAEDQDLAAALIRWRSSVSGA
Ga0311370_116247522	3300030503	Palsa	QFQRVHWLVPGERVAAGLRGRGLGAPLLTAASAEDQDLVAALLRWRSSESEA
Ga0311370_124083041	3300030503	Palsa	HWLVPGERIAAGVREYGLAAPLLSSASAEDHDLVSALIRWRASASGA
Ga0302192_100603273	3300030507	Bog	SAETAAGLLQIPDADLRRELERAHWLVPGARVAGALRASGLEAPILQAESAEDHDLVAAIVRWRSSASGA
Ga0302183_104159142	3300030509	Palsa	ALLEVAPLELRGEFERAHWLVPGERVAAGLRELGLNAPLLQADSAEDQDLAAALIRWRSSVSGA
Ga0302193_106049431	3300030519	Bog	LGMATPALREEFERAQWLVPGERIAAGLRELGLSAPLLQAESADDHDLVGALVRWRSSASGA
Ga0311372_114115861	3300030520	Palsa	VATGLRELGLKAPLLRADSAEDQDLAAALIRWRSSVSGA
Ga0311355_1001418813	3300030580	Palsa	ELRGEFERAHWLVPGERVAAGLRELGLNAPLLQADSAEDQDLTAALIRWRSSVSGA
Ga0302313_101815622	3300030693	Palsa	RSLLGMAGPALRGEFERVHWLVPGARVAAGVRKCGLSAPLLQAESAEDQDLVAALVRWRSSASGA
Ga0265462_122589462	3300030738	Soil	GNLLKVATPGLRSEFERALWLVPGERMAAGVRNLGLSAPLLRAESAEDQDLVTALIRWRSSVSGA
Ga0265750_10200431	3300030813	Soil	TGLRELGLKAPLLRADSAEDQDLAAALIRWRSSVSGA
Ga0075374_108337531	3300030855	Soil	LLKLAPLELRSEFERVHWLVSGERVARGLRELGLQAPLLQADSAEDQDLVAALVRWRSSVSGA
Ga0302180_101992251	3300031028	Palsa	VPGERVAAGLRELGLNAPLLQADSAEDQDLTAALIRWRSSVSGA
Ga0302180_102905811	3300031028	Palsa	TPALRAEFERVHWVVPGERIARSLRERGLPAPVLQAGSALDQDLVEAIVRWRASESGA
Ga0170834_1049340181	3300031057	Forest Soil	EFERVHWLVPGARVAAGVRELGLAAPLLQSESAEDQDLVAALIRWRSSASGA
Ga0170824_1151136282	3300031231	Forest Soil	LVPGGRVASAVRDLGVAAPLLQAESAEDQALVDALLRWRSSASGA
Ga0170824_1212905891	3300031231	Forest Soil	IAGNLLHVAAHGAAPALRSEFDRVHWLVPGARVAAGVRELGLAAPLLQSESAEDQDLVAALIRWRSSASGA
Ga0302323_1029616362	3300031232	Fen	QFERSHWLVPGERVANAVRELGLTAPLLQADSAEDQDLVGALLRWRAAESGA
Ga0302325_127219302	3300031234	Palsa	SPALRVEFERTHWLVPGARVAAGIRELGLSAPLLQAESADDQDLVAALVDWRTESGA
Ga0302324_1021722091	3300031236	Palsa	IPGERIAAGLRERGLSAPLLQAESADDHDLVAALMRWRSSVSGA
Ga0302324_1035283151	3300031236	Palsa	PVLRRALDRVQWLVPSERVAKELRKRGVKAPLLRADSAEDQDLLAAIRRWRSNASGA
Ga0170818_1035419641	3300031474	Forest Soil	ARVAAGVRELGLAAPLLQSESAEDQDLVAALIRWRSSASGA
Ga0265313_103202762	3300031595	Rhizosphere	RTHWLVPGARIAAAVRELGLRAPLIESESADDHALVAALVAWRAAESGA
Ga0307372_105908851	3300031671	Soil	AEALLGFATPALRAHFERVHWIVPSGRIASAVRLQGVGAALLRADSAEDQDLLAELLRWRSSTSAA
Ga0310686_1117785391	3300031708	Soil	IAGSALRGEFERAHWLVPGERIAHGLRELGLPAPVVQADSADDHDLVAALIRWRSSVSGA
Ga0307474_114467151	3300031718	Hardwood Forest Soil	GERIAHGLRELGVLAAVVQADSADDHDLVAALIRWRSSESGA
Ga0307478_115925961	3300031823	Hardwood Forest Soil	LRELGMPAPVVQADSADDHDLVAALIRWRSIVSGA
Ga0307478_117482652	3300031823	Hardwood Forest Soil	LELRSAFERAHWLVPGERVAAGLRELGLRAPLLQADSAEDQDLVAALMRWRSSVSGA
Ga0307470_107788411	3300032174	Hardwood Forest Soil	RVEFERVHWLVPGERIAAGLRELGMQAPLLQAQSAEDHDLVTALIRWRSSVSGA
Ga0370484_0105553_1_177	3300034125	Untreated Peat Soil	TPAVRREFDRVHWLVPGARVAGALRERGVTAPILQADTAEDQDLVAAIIRWRSSVSGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083346

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences