Metagenome / Metatranscriptome Family F083427

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083427
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	76 residues
Representative Sequence	MRVLGKLELTATFGMLILAGGMSGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Number of Associated Samples	77
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.96 %
% of genes near scaffold ends (potentially truncated)	15.04 %
% of genes from short scaffolds (< 2000 bps)	77.88 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.522 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.699 % of family members)
Environment Ontology (ENVO)	Unclassified (27.434 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.566 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 22.64% β-sheet: 0.00% Coil/Unstructured: 77.36%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00456	Transketolase_N	5.31
PF06974	WS_DGAT_C	5.31
PF01053	Cys_Met_Meta_PP	3.54
PF00196	GerE	2.65
PF00440	TetR_N	1.77
PF02771	Acyl-CoA_dh_N	1.77
PF13302	Acetyltransf_3	1.77
PF00264	Tyrosinase	1.77
PF00248	Aldo_ket_red	1.77
PF07721	TPR_4	1.77
PF11304	DUF3106	0.88
PF13191	AAA_16	0.88
PF14366	DUF4410	0.88
PF13432	TPR_16	0.88
PF08028	Acyl-CoA_dh_2	0.88
PF03349	Toluene_X	0.88
PF14849	YidC_periplas	0.88
PF09335	SNARE_assoc	0.88
PF04264	YceI	0.88
PF14235	DUF4337	0.88
PF08327	AHSA1	0.88
PF13419	HAD_2	0.88
PF02656	DUF202	0.88
PF11159	DUF2939	0.88
PF14023	DUF4239	0.88
PF11769	DUF3313	0.88
PF14534	DUF4440	0.88
PF02517	Rce1-like	0.88
PF00679	EFG_C	0.88
PF01134	GIDA	0.88
PF07508	Recombinase	0.88
PF16864	Dimerisation2	0.88
PF02739	5_3_exonuc_N	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	5.31
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	5.31
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	3.54
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	3.54
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	3.54
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	3.54
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	3.54
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	3.54
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	3.54
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	3.54
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	3.54
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	3.54
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	3.54
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	2.65
COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	Replication, recombination and repair [L]	0.88
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.88
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.88
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.88
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.88
COG2067	Long-chain fatty acid transport protein	Lipid transport and metabolism [I]	0.88
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.88
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.88
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.52 %
Unclassified	root	N/A	42.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.52 %
Unclassified	root	N/A	42.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.52 %
Unclassified	root	N/A	42.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.62 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.08 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.08 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	3.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.77 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.77 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.08 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3.54 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.88 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.08 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.77 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.77 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.08 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.77 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.88 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.88 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.88 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.08 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.77 %
Methylocystis heyeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	0.88 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.88 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.88 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.08 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.77 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	0.88 %
Methylocystis heyeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	0.88 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.88 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.48 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.08 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.77 %
Archangium gephyra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	0.88 %
Methylocystis heyeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	0.88 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.88 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.88 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10001355	All Organisms → cellular organisms → Bacteria	18229	Open in IMG/M
3300001396\|JGI20175J14863_1024234	Not Available	765	Open in IMG/M
3300001396\|JGI20175J14863_1033256	Not Available	607	Open in IMG/M
3300002245\|JGIcombinedJ26739_100208903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis heyeri	1844	Open in IMG/M
3300004080\|Ga0062385_10000077	All Organisms → cellular organisms → Bacteria	18103	Open in IMG/M
3300004080\|Ga0062385_10504191	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300004080\|Ga0062385_10747534	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300004082\|Ga0062384_100099437	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300004082\|Ga0062384_100242402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1089	Open in IMG/M
3300004082\|Ga0062384_100983632	Not Available	602	Open in IMG/M
3300004091\|Ga0062387_100189343	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300004092\|Ga0062389_101496580	Not Available	859	Open in IMG/M
3300004092\|Ga0062389_102431216	Not Available	693	Open in IMG/M
3300004152\|Ga0062386_100471942	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300004635\|Ga0062388_102946311	Not Available	502	Open in IMG/M
3300005533\|Ga0070734_10277262	Not Available	960	Open in IMG/M
3300005538\|Ga0070731_10410246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	901	Open in IMG/M
3300005541\|Ga0070733_10317301	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1031	Open in IMG/M
3300006055\|Ga0097691_1005634	All Organisms → cellular organisms → Bacteria	7051	Open in IMG/M
3300006055\|Ga0097691_1011582	All Organisms → cellular organisms → Bacteria → Proteobacteria	4315	Open in IMG/M
3300009525\|Ga0116220_10600282	Not Available	506	Open in IMG/M
3300009552\|Ga0116138_1019886	All Organisms → cellular organisms → Bacteria → Proteobacteria	2091	Open in IMG/M
3300009632\|Ga0116102_1022203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2184	Open in IMG/M
3300010048\|Ga0126373_11631924	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300010339\|Ga0074046_10011815	All Organisms → cellular organisms → Bacteria	6424	Open in IMG/M
3300010341\|Ga0074045_10036198	All Organisms → cellular organisms → Bacteria	3675	Open in IMG/M
3300010341\|Ga0074045_10473676	Not Available	806	Open in IMG/M
3300010343\|Ga0074044_10026035	All Organisms → cellular organisms → Bacteria	4169	Open in IMG/M
3300010343\|Ga0074044_10121001	Not Available	1757	Open in IMG/M
3300010361\|Ga0126378_11059740	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300010379\|Ga0136449_100010923	All Organisms → cellular organisms → Bacteria	25023	Open in IMG/M
3300010379\|Ga0136449_100325299	Not Available	2782	Open in IMG/M
3300010379\|Ga0136449_102064613	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300011120\|Ga0150983_10370999	All Organisms → cellular organisms → Bacteria	1743	Open in IMG/M
3300011120\|Ga0150983_11850102	Not Available	547	Open in IMG/M
3300014152\|Ga0181533_1122884	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300014155\|Ga0181524_10169121	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300014156\|Ga0181518_10227405	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300014156\|Ga0181518_10468837	Not Available	600	Open in IMG/M
3300014158\|Ga0181521_10031462	All Organisms → cellular organisms → Bacteria	4035	Open in IMG/M
3300014162\|Ga0181538_10121921	All Organisms → cellular organisms → Bacteria	1517	Open in IMG/M
3300014165\|Ga0181523_10208249	Not Available	1129	Open in IMG/M
3300014638\|Ga0181536_10003501	All Organisms → cellular organisms → Bacteria	17060	Open in IMG/M
3300014638\|Ga0181536_10132912	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300016750\|Ga0181505_10805053	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300017823\|Ga0187818_10365982	Not Available	638	Open in IMG/M
3300017934\|Ga0187803_10134123	Not Available	973	Open in IMG/M
3300017935\|Ga0187848_10482787	Not Available	507	Open in IMG/M
3300017943\|Ga0187819_10420454	Not Available	767	Open in IMG/M
3300017943\|Ga0187819_10647331	Not Available	597	Open in IMG/M
3300017946\|Ga0187879_10000311	All Organisms → cellular organisms → Bacteria	33014	Open in IMG/M
3300018009\|Ga0187884_10280546	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300019082\|Ga0187852_1293173	Not Available	649	Open in IMG/M
3300020580\|Ga0210403_10727678	Not Available	793	Open in IMG/M
3300020582\|Ga0210395_10359132	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300020582\|Ga0210395_10465744	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300020583\|Ga0210401_10527098	Not Available	1044	Open in IMG/M
3300020583\|Ga0210401_10891562	Not Available	748	Open in IMG/M
3300020583\|Ga0210401_11203264	Not Available	616	Open in IMG/M
3300020583\|Ga0210401_11520363	Not Available	527	Open in IMG/M
3300021170\|Ga0210400_10130256	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2014	Open in IMG/M
3300021170\|Ga0210400_10215838	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300021170\|Ga0210400_11545618	Not Available	525	Open in IMG/M
3300021171\|Ga0210405_10079401	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2586	Open in IMG/M
3300021171\|Ga0210405_10464595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	994	Open in IMG/M
3300021405\|Ga0210387_10863666	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300021405\|Ga0210387_11702932	Not Available	534	Open in IMG/M
3300021432\|Ga0210384_10235098	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1650	Open in IMG/M
3300021559\|Ga0210409_11397893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	576	Open in IMG/M
3300022504\|Ga0242642_1083759	Not Available	540	Open in IMG/M
3300022533\|Ga0242662_10174882	Not Available	663	Open in IMG/M
3300022724\|Ga0242665_10316458	Not Available	550	Open in IMG/M
3300025453\|Ga0208455_1017000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1773	Open in IMG/M
3300025454\|Ga0208039_1036461	Not Available	947	Open in IMG/M
3300025457\|Ga0208850_1056161	Not Available	648	Open in IMG/M
3300025481\|Ga0208079_1005080	All Organisms → cellular organisms → Bacteria	5609	Open in IMG/M
3300025484\|Ga0208587_1104913	Not Available	544	Open in IMG/M
3300025579\|Ga0207927_1063298	Not Available	917	Open in IMG/M
3300025619\|Ga0207926_1019545	Not Available	2150	Open in IMG/M
3300027570\|Ga0208043_1000463	All Organisms → cellular organisms → Bacteria	18350	Open in IMG/M
3300027619\|Ga0209330_1029175	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300027701\|Ga0209447_10035134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1394	Open in IMG/M
3300027737\|Ga0209038_10082372	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300027737\|Ga0209038_10137688	Not Available	739	Open in IMG/M
3300027737\|Ga0209038_10225106	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027767\|Ga0209655_10197132	Not Available	662	Open in IMG/M
3300027795\|Ga0209139_10142373	Not Available	847	Open in IMG/M
3300027825\|Ga0209039_10338740	Not Available	586	Open in IMG/M
3300027826\|Ga0209060_10565139	Not Available	515	Open in IMG/M
3300027829\|Ga0209773_10279385	Not Available	697	Open in IMG/M
3300027867\|Ga0209167_10734153	Not Available	539	Open in IMG/M
3300027908\|Ga0209006_10038608	All Organisms → cellular organisms → Bacteria	4315	Open in IMG/M
3300028906\|Ga0308309_10727248	Not Available	862	Open in IMG/M
3300029636\|Ga0222749_10290359	Not Available	843	Open in IMG/M
3300031708\|Ga0310686_101356806	Not Available	706	Open in IMG/M
3300031708\|Ga0310686_104167719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1681	Open in IMG/M
3300031708\|Ga0310686_105298187	All Organisms → cellular organisms → Bacteria	6053	Open in IMG/M
3300031708\|Ga0310686_106954863	All Organisms → cellular organisms → Bacteria	28033	Open in IMG/M
3300031708\|Ga0310686_107248199	Not Available	573	Open in IMG/M
3300031708\|Ga0310686_115385494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300031708\|Ga0310686_116425632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1844	Open in IMG/M
3300031718\|Ga0307474_10463753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	991	Open in IMG/M
3300031753\|Ga0307477_10407276	Not Available	931	Open in IMG/M
3300031823\|Ga0307478_10072389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2608	Open in IMG/M
3300031823\|Ga0307478_10297126	All Organisms → cellular organisms → Bacteria → Proteobacteria	1322	Open in IMG/M
3300031823\|Ga0307478_11742111	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031962\|Ga0307479_10316282	All Organisms → cellular organisms → Bacteria	1543	Open in IMG/M
3300031962\|Ga0307479_10342170	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300031962\|Ga0307479_10792861	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300032160\|Ga0311301_10013759	All Organisms → cellular organisms → Bacteria	24694	Open in IMG/M
3300032160\|Ga0311301_11809781	Not Available	726	Open in IMG/M
3300032515\|Ga0348332_11534400	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300033887\|Ga0334790_000056	All Organisms → cellular organisms → Bacteria	122978	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.72%
Aquatic	Environmental → Aquatic	36.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.95%
Freshwater	Environmental → Aquatic → Freshwater	36.28%
Peat	Environmental → Terrestrial → Peat	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	36.28%
Loam	Environmental → Terrestrial → Soil → Loam	5.31%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	29.20%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.47%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.70%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	16.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	7.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	7.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	4.42%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	4.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.42%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001396	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025454	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150 (SPAdes)	Environmental	Open in IMG/M
3300025457	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025484	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100013553	3300000567	Peatlands Soil	MRKTLSKLRILVFGTLIVGISGCSMFSPSNAPVDCDAVKNQQQAGFSDAKIASNLGSTVDMVAACHGPKTAAGPQD*
JGI20175J14863_10242342	3300001396	Arctic Peat Soil	MRVPSKLRLTATFGMLILIGGMSGCSMLSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD*
JGI20175J14863_10332562	3300001396	Arctic Peat Soil	GKPGIAATIGMLILAGGISGCSMFSPSNAPVDCNAVINQEKAGFSDAKIASDLGATIDKVEACHGPKTAVGPQD*
JGIcombinedJ26739_1002089032	3300002245	Forest Soil	MRRVLGKPGVAAAIGMLILAGVVSGCSMFSPSNAPVDCDAVLNQEQAGFTDAKIASDLGASLDKVEACHGPKTNR*
Ga0062385_1000007714	3300004080	Bog Forest Soil	MRKLSSLTIAAGLGIMGLLCGISGCSMFSPNNVPVDCNAVKNQEQAGDTDAKIATDLGASVDQVAACHGPKTAVGPQD*
Ga0062385_105041911	3300004080	Bog Forest Soil	MQVTSKLRLTATFGMLILVGGMSGCSVFSTSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD*
Ga0062385_107475341	3300004080	Bog Forest Soil	MRKALSGIGILVFGMLIVGISGCSTFSTSNAPVDCDAVKNQEQAGFSDVKIASDLGSTVDKVAACHGPKT
Ga0062384_1000994372	3300004082	Bog Forest Soil	MRVRSQLRLTTTFGMLILACGVSGCSMFSASNAPVDCDAVKNQQQAGFSDTKIASNLGSTVDQVAACHGPKTAVGPQD*
Ga0062384_1002424022	3300004082	Bog Forest Soil	MQVTGKLRLSATFGMPILADGMSGCSVFSASNVPVDCDAVKNQQHAGFSDAKIASDLGSTVDKVAACHGPKTA*
Ga0062384_1009836322	3300004082	Bog Forest Soil	MSKLPNKLRIAVMFGALIFGFSGCSMFSASNAPVDCDAVKNQEQAGFTDAKIASDLGSTVDQVAACHGPKTAAGPQD*
Ga0062387_1001893431	3300004091	Bog Forest Soil	MRKLATILMPVTLGVLMACDLGGCSLFNPSNAPVDCNAVKNQEQAGMTDAKIASDLGSTVDQVEACHGPKTAVGPQD*
Ga0062389_1014965801	3300004092	Bog Forest Soil	MRELKLIIGAVFGTLVLTGGISACSMFSAANVPVDCNAVKNQEQAGFTDAKIASDLGANVDQVTACHGPKTAVGPQD*
Ga0062389_1024312161	3300004092	Bog Forest Soil	MRKLLGISRIAAVFGTLVLSGGISGWSVFSPSRAPVDCDAVKSQEQAGVDDAKIASNLGATVDEVAACHRGKTSTGAQELDK*
Ga0062386_1004719421	3300004152	Bog Forest Soil	MRVPSKLMLTATFAMLILAGGISGCSMFSASNAPVDCNAVKNQEQAGFTDAKIASDLGSTVDQVAACHGPKTAAGPQD*
Ga0062388_1029463112	3300004635	Bog Forest Soil	MRKLLGISRIAAVFGTLVLSGGISGWSVFSPSRAPVDCDAVKSQEQAGVDDAKIASNLGATVDEVAACHRGKTSTG
Ga0070734_102772621	3300005533	Surface Soil	MRELKLIIGASFGALILAGGISACSMFSAANVPVDCNAVKNQEQAGYTDAKIASDLGASVDQVAACHGPKTAVGPQD*
Ga0070731_104102462	3300005538	Surface Soil	MREARKPGIARLLASLFLLSSLSGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLSTSVEKVAACHGPKTAVGPQD*
Ga0070733_103173012	3300005541	Surface Soil	MREARKPGIARLLALLFLLSSLSGCSMFSASNPPMDCDAVKNQEQAGFSDGKIASDLSTSVEKV
Ga0097691_10056342	3300006055	Arctic Peat Soil	MRVPNKLRLTATFGMLILIGGMSGCSMFSPSNPPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD*
Ga0097691_10115826	3300006055	Arctic Peat Soil	MLKVLGKPGIAATIGMLILAGGISGCSMFSPSNAPVDCNAVINQEKAGFSDAKIASDLGATIDKVEACHGPKTAVGPQD*
Ga0116220_106002822	3300009525	Peatlands Soil	MRVPGKLIVTATFAMLILAGGMSGCSMFSASNAPVDCNAVKNQEQAGFTDAKIASDLGATVDQVAACHGPKTAAGPQD*
Ga0116138_10198863	3300009552	Peatland	MLKALRKLRILVFGTLIVGISGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGATVDKVAACHGPKTAAGPQD*
Ga0116102_10222032	3300009632	Peatland	MRVPGKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVAEVAACHGPKTAQGPQD*
Ga0126373_116319242	3300010048	Tropical Forest Soil	MQVTTRLKLTATLGILILACGISGCSSLSASNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD*
Ga0074046_100118153	3300010339	Bog Forest Soil	MLTATFAMLILAGGISGCSMFSASNAPVDCNAVKNQEQAGFTDAKIASDLGSTVDQVAACHGPKTAAGPQD*
Ga0074045_100361981	3300010341	Bog Forest Soil	LVFGALIVGVSGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAAGPQD*
Ga0074045_104736761	3300010341	Bog Forest Soil	MRVLGKLELTATFGMLILAGGMSGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD*
Ga0074044_100260352	3300010343	Bog Forest Soil	MRKTLRKLGILVFGALIVGVSGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAAGPQD*
Ga0074044_101210013	3300010343	Bog Forest Soil	MLKALTKLRILVFGTLIVGISGCSMVSPSNAPVDCDAVKNQQQAGFSDAKIASDLGATVDKVAACHGPKTAAGPQD*
Ga0126378_110597402	3300010361	Tropical Forest Soil	MQVTTRLKLTATLGILILAGGISGCSSLSASNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD*
Ga0136449_1000109237	3300010379	Peatlands Soil	MRKALSQLRILVFGTVIVGISGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD*
Ga0136449_1003252992	3300010379	Peatlands Soil	MRKTLSKLGILVLGTLIVGVSGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAAGPQD*
Ga0136449_1020646132	3300010379	Peatlands Soil	MLILAGGMSGCSMFSASNAPVDCNAVKNQEQAGFTDAKIASDLGATVDQVAACHGPKTAAGPQD*
Ga0150983_103709993	3300011120	Forest Soil	MRDVLSKMGLAATLGTIIMAGGMLGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD*
Ga0150983_118501022	3300011120	Forest Soil	MRVTSKLRIAATFGMLILVGGMSGCSAFSASNAPVDCDAVKNQVQAGMSDAKIASDLGSTVDKVAACHGPKTAVGPQD*
Ga0181533_11228841	3300014152	Bog	LLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDARIASDLGATVAQVAACHGPKTAAGPQD*
Ga0181524_101691212	3300014155	Bog	MRVPGKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGSTVAEVAACHGPKTAQGPQD*
Ga0181518_102274052	3300014156	Bog	MRVRGKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGSTVAEVAACHGPKTAQGPQD*
Ga0181518_104688371	3300014156	Bog	KFRISRRRKDQIRRNSCMRKTLSKLGILVFGTLIVGVSGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAAGPQD*
Ga0181521_100314622	3300014158	Bog	MRKTLSKLGILVFGTLIVGVSGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAAGPQD*
Ga0181538_101219211	3300014162	Bog	LLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGSTVAEVAACHGPKTAQGPQD*
Ga0181523_102082491	3300014165	Bog	MLKALTKLRILVFGTLIVGISGCSMFSPSNAPVDCDAVKNQQQAGFSDAKIASDLGATVDKVAACHGPKTAAGPQD*
Ga0181536_100035019	3300014638	Bog	MRVPSKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDARIASDLGATVAQVAACHGPKTAAGPQD*
Ga0181536_101329122	3300014638	Bog	MRVPGKLLLTATFGMLILVGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGSTVAEVAACHGPKTAQGPQD*
Ga0181505_108050531	3300016750	Peatland	MRAPGKLILTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGSTVAEVAACHGPKTAQGPQD
Ga0187818_103659821	3300017823	Freshwater Sediment	MLKVLGKPGIAATIGMLILAGGISGCSMFSPSNAPVDCNAVINQEKAGFSDAKIASDLGAPIDKVEACHGPKTAVGPQD
Ga0187803_101341232	3300017934	Freshwater Sediment	MRVTGKLRLTAPFGMMILAGGMSGCSLFSTSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0187848_104827871	3300017935	Peatland	MRVPGKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVAEVAACHGPKTAQGPQ
Ga0187819_104204541	3300017943	Freshwater Sediment	MRVPQKPRLIATFGILTLAWGISGCSTFSPSNAPVDCDAVKNQQQAGLSDAKIASDLGTTVDKVAACHGPKTAVGPQD
Ga0187819_106473312	3300017943	Freshwater Sediment	MLKVLGKPGIAAAIGMLMLAGGISGCSMFSPSNAPVDCNAVINQEKAGFSDAKIASDLGAPIDKVEACHGPKTAVGPQD
Ga0187879_1000031134	3300017946	Peatland	MLKALRKLRILVFGTLIVGISGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGATVDKVAACHGPKTAAGPQD
Ga0187884_102805461	3300018009	Peatland	PGKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVAEVAACHGPKTAQGPQD
Ga0187852_12931732	3300019082	Peatland	MRVPSKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDARIASDLGATVAQVAACHGPKTAAGPQD
Ga0210403_107276781	3300020580	Soil	MREVLSKMGIAATLGTMIMAGGMLGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0210395_103591323	3300020582	Soil	MRVTSKLRIAATFGMLILVGGMSGCSAFSASNAPVDCDAVKNQVQAGMSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0210395_104657441	3300020582	Soil	MRKLSSLTIAAGLGITGLLCGISGCSMFSPNNVPVDCNAVKNQEQAGDTDAKIATDLGASVDQVAACHGPKTAVGPQD
Ga0210401_105270982	3300020583	Soil	MRIANKPGLTATFGMLILAGGMSGCSMFSTSNAPVDCDAVKNQQQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0210401_108915621	3300020583	Soil	MRDVLSKMGLAATLGTMIMAGGMLGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0210401_112032642	3300020583	Soil	MRRVLGKPRVATAIGMLILVGGVSGCSTFSPSNAPVDCDAVLNQEQAGFTDAKIASDLGASVDKVEACHGPKTNR
Ga0210401_115203631	3300020583	Soil	MRVTSKLRIAATFGMLILVGGMSGCSAFSASNAPVDCDAVKNQVQAGMSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0210400_101302561	3300021170	Soil	TMIMAGGMSGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0210400_102158382	3300021170	Soil	MQVTRRLRLTPTFGVLILAGAISGCSMFSASNTPVDCDAVKNQEQAGLSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0210400_115456181	3300021170	Soil	MRRVLGKPRVATAIGMLIFAGGVSGCSMFSPSNAPVDCDAVLNQEQAGFTDAKIASDLGASVDKVEACHGPKTNR
Ga0210405_100794011	3300021171	Soil	MPVITSKLKLTAALRMLILSCVISGCSTFSASNAPVDCDAVKNQQQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0210405_104645952	3300021171	Soil	MRESNNLRFIATLGMVILVGGMSGCSVFSASNAPVDCDAVKNQEQAGFTDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0210387_108636662	3300021405	Soil	MQVTSRLRITATFGMLILAGGMSGCSVFSASNAPVDCDAVKNQEQAGFTDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0210387_117029321	3300021405	Soil	MREVLSKMGIAATLGTMIMAGGMSGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0210384_102350982	3300021432	Soil	MREARKPGIARLLASLFLLSSLSGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLSTSVEKVAACHGPKTAVGPQD
Ga0210409_113978931	3300021559	Soil	MRKTLCNLRILVFGMLIVGISGCSMFSASNAPVDCDAVKNQQQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0242642_10837592	3300022504	Soil	MRDVLSKMGLAATLGTMIMAGGMLGCSMFSASNAPIDCEAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0242662_101748822	3300022533	Soil	NGWMREVLSKMGIAATLGTMIMAGGMSGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0242665_103164582	3300022724	Soil	MRDVLRKMGLAATLGTMIMAGGMLGCSMFSASNAPIDCDAVKNQQQAGFSDAKIASDLGTSVD
Ga0208455_10170002	3300025453	Peatland	MRVPGKLLLTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVAEVAACHGPKTAQGPQD
Ga0208039_10364611	3300025454	Peatland	FGTLIVGISGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGATVDKVAACHGPKTAAGPQD
Ga0208850_10561611	3300025457	Arctic Peat Soil	MLKVLGKPGIAATIGMLILAGGISGCSMFSPSNAPVDCNAVINQEKAGFSDAKIASDLGATIDKVEACHGPKTAVGPQD
Ga0208079_10050801	3300025481	Arctic Peat Soil	MRVPSKLRLTATFGMLILIGGMSGCSMFSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0208587_11049132	3300025484	Arctic Peat Soil	MRVPSKLRLTATFGMLILIGGMSGCSMFSPSNPPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0207927_10632982	3300025579	Arctic Peat Soil	MRVPSKLRLTATFGMLILIGGMSGCSMLSPSNAPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0207926_10195453	3300025619	Arctic Peat Soil	MRVPNKLRLTATFGMLILIGGMSGCSMFSPSNPPVDCNAVKNQEQAGFSDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0208043_10004632	3300027570	Peatlands Soil	MRKTLSKLRILVFGTLIVGISGCSMFSPSNAPVDCDAVKNQQQAGFSDAKIASNLGSTVDMVAACHGPKTAAGPQD
Ga0209330_10291752	3300027619	Forest Soil	MQVASKLRLTTTFGMLILAGGMSGCSMFSTSNAPVDCDAVKNQQQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0209447_100351342	3300027701	Bog Forest Soil	MRKLSSLTIAAGLGIMGLLCGISGCSMFSPNNVPVDCNAVKNQEQAGDTDAKIATDLGASVDQVAACHGPETGGNKNTIVPEKGY
Ga0209038_100823722	3300027737	Bog Forest Soil	MRKLSSLTIAAGLGIMGLLCGISGCSMFSPNNVPVDCNAVKNQEQAGDTDAKIATDLGASVDQVAACHGPKTAVGPQD
Ga0209038_101376882	3300027737	Bog Forest Soil	MRVRSQLRLTTTFGMLILACGVSGCSMFSASNAPVDCDAVKNQQQAGFSDTKIASNLGSTVDQVAACHGPKTAVGPQD
Ga0209038_102251061	3300027737	Bog Forest Soil	MQVTGKLRLSATFGMPILADGMSGCSVFSASNVPVDCDAVKNQQHAGFSDAKIASDLGSTVDKVAACHGPKTA
Ga0209655_101971322	3300027767	Bog Forest Soil	MRKALSGIGILVFGMLIVGISGCSTFSTSNAPVDCDAVKNQEQAGFSDVKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0209139_101423731	3300027795	Bog Forest Soil	MQVTSKLRLTATFGMLILVGGMSGCSVFSTSNAPVDCDAVKNQEQAGFSDVKIASDLGSTVDKVAACHGPKTDVGPQD
Ga0209039_103387402	3300027825	Bog Forest Soil	NGRMRIPGKPKLKATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGATVDQVAACHGPKTAAGPQD
Ga0209060_105651391	3300027826	Surface Soil	MRELKLIIGASFGTLILASGISACSMFSAANVPVDCNAVKNQEQAGYTDAKIASDLGASVDQVAACHGPKTAVGPQD
Ga0209773_102793852	3300027829	Bog Forest Soil	MQVTSKLRLTATFGMLILVGGMSGCSVFSASNVPVDCDAVKNQQHAGFSDAKIASDLGSTVDKVAACHGPKTA
Ga0209167_107341531	3300027867	Surface Soil	MYKLCSKHAIAAGFGILLLVGGISGCSLFSAANAPVDCNAVKNQEQAGMSDAQIASDLGAQVDQVAACHGPKTAVGPQD
Ga0209006_100386083	3300027908	Forest Soil	MRRVLGKPGVAAAIGMLILAGVVSGCSMFSPSNAPVDCDAVLNQEQAGFTDAKIASDLGASLDKVEACHGPKTNR
Ga0308309_107272483	3300028906	Soil	MQVTSKLSLTATFGMLILVGGMSGCSVFSTSNAPVDCDAVKNQQQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0222749_102903591	3300029636	Soil	MRDVLSKMGLAATLGTMIMAGGMLGCSMFSASNAPIECDAVKNQQQAGFSDAKIASDLGTSVDKVAACHGPKTAVGPQD
Ga0310686_1013568062	3300031708	Soil	ATFGMLILVGGMSGCSAFSASNAPIDCDAVKNQVQAGMSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0310686_1041677192	3300031708	Soil	MQVTSKLRLTATFGMLILAGGMSGCSMFSTSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGHQD
Ga0310686_1052981875	3300031708	Soil	MRKLSSKPAIANVFGILILTLGISGCSMFSASNVPVDCNAVKNQEASGMTDAQIASDLGAQVDQVAACHGPKTAVGPQD
Ga0310686_1069548633	3300031708	Soil	MRKALNQLRILVLGTVIVGISGCSMFSASNAPVDCDAVKNQEQAGFTDAKIASDLGSTVDQVAACHGPKTAVGPQD
Ga0310686_1072481991	3300031708	Soil	MRKMPGKPGVAAIFGTLILIGGISGCSMFSSSNTPVDCDAVKNQEQAGVSDAMIASNLGATVDEVAACHGAKTSTGAQELDK
Ga0310686_1153854941	3300031708	Soil	MQVTSKLRLRATLAMLILAGGMSGRNVFSTSNAPVDCDAVKNQEQAGFSDVKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0310686_1164256321	3300031708	Soil	MLILACGVSGCSMFSASNAPVDCDAVKNQQQAGFSDTKIASNLGSTVDQVAACHGPKTAVGPQD
Ga0307474_104637532	3300031718	Hardwood Forest Soil	MQVTSKLRLTATFGMLILAGGISGCSMFSASNAPVDCDAVKNQEQAGFSDVKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0307477_104072762	3300031753	Hardwood Forest Soil	MRVTNKVRLTATIGMLILAAGISGCSLFSTSNAPVDCDAVKNQEQAGLSDAKIASDLGSTVDKVTACHGPKTAVGPQD
Ga0307478_100723894	3300031823	Hardwood Forest Soil	MLILAGGMSGCSMFSASNAPVDCDAVKNQEQAGFSDVKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0307478_102971262	3300031823	Hardwood Forest Soil	MRVTSKLRLTATFGMLILVGGMSGCSVFSTSNAPVDCDAVKNQEQAGFTDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0307478_117421112	3300031823	Hardwood Forest Soil	MLATSKPRLTATFGMLILTGVVSGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLSSTVDKVAECHGPKTAVGPQD
Ga0307479_103162821	3300031962	Hardwood Forest Soil	MLATSKPRLTATFGMLILTGVVSGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLSSTVDKVAECHGPKTAVGLQD
Ga0307479_103421702	3300031962	Hardwood Forest Soil	MRRVLGKPRVATAIGILLLAGGVSGCSMFSPSNAPVDCDAVLNQEQAGFTDAKIASDLGASVDKVEACHGPKTNR
Ga0307479_107928612	3300031962	Hardwood Forest Soil	MQVTSKPRLMTTFGLLILAGAISGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0311301_1001375911	3300032160	Peatlands Soil	MRKALSQLRILVFGTVIVGISGCSMFSPSNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAVGPQD
Ga0311301_118097812	3300032160	Peatlands Soil	MRKTLSKLGILVLGTLIVGVSGCSMFSASNAPVDCDAVKNQEQAGFSDAKIASDLGSTVDKVAACHGPKTAAGPQD
Ga0348332_115344002	3300032515	Plant Litter	RKMPGKPGVAAIFGTLILIGGISGCSMFSSSNTPVDCDAVKNQEQAGVSDAMIASNLGATVDKVAACHGAKTSTGAQELDK
Ga0334790_000056_63380_63616	3300033887	Soil	MRVPGKLILTATFGMLILAGGISGCSMFSPSNAPVDCNAVKNQEQAGFTDAKIASDLGSTVAEVAACHGPKTAQGPQD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083427

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences