Metagenome / Metatranscriptome Family F083445

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083445
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	127 residues
Representative Sequence	MPVIDDPDFLTNRTKQLSAVHELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLERQQEGGRSSRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGATDRTSGLVAQRGAA
Number of Associated Samples	71
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.41 %
% of genes near scaffold ends (potentially truncated)	38.94 %
% of genes from short scaffolds (< 2000 bps)	74.34 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.372 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (12.389 % of family members)
Environment Ontology (ENVO)	Unclassified (27.434 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.327 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 74.52% β-sheet: 0.00% Coil/Unstructured: 25.48%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF03795	YCII	4.42
PF13564	DoxX_2	3.54
PF07992	Pyr_redox_2	3.54
PF03631	Virul_fac_BrkB	3.54
PF08281	Sigma70_r4_2	1.77
PF06429	Flg_bbr_C	1.77
PF01619	Pro_dh	1.77
PF12704	MacB_PCD	1.77
PF02687	FtsX	1.77
PF12697	Abhydrolase_6	1.77
PF01903	CbiX	1.77
PF05685	Uma2	1.77
PF02219	MTHFR	1.77
PF00741	Gas_vesicle	0.88
PF06224	HTH_42	0.88
PF00149	Metallophos	0.88
PF02775	TPP_enzyme_C	0.88
PF00380	Ribosomal_S9	0.88
PF01761	DHQ_synthase	0.88
PF04542	Sigma70_r2	0.88
PF14344	DUF4397	0.88
PF13604	AAA_30	0.88
PF09844	DUF2071	0.88
PF14559	TPR_19	0.88
PF13714	PEP_mutase	0.88
PF05974	DUF892	0.88
PF07332	Phage_holin_3_6	0.88
PF00144	Beta-lactamase	0.88
PF13380	CoA_binding_2	0.88
PF00069	Pkinase	0.88
PF01266	DAO	0.88
PF14667	Polysacc_synt_C	0.88
PF07396	Porin_O_P	0.88
PF12867	DinB_2	0.88
PF08282	Hydrolase_3	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.42
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.54
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	3.54
COG0506	Proline dehydrogenase	Amino acid transport and metabolism [E]	1.77
COG0685	5,10-methylenetetrahydrofolate reductase	Amino acid transport and metabolism [E]	1.77
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	1.77
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	1.77
COG1749	Flagellar hook protein FlgE	Cell motility [N]	1.77
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	1.77
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	1.77
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	1.77
COG0103	Ribosomal protein S9	Translation, ribosomal structure and biogenesis [J]	0.88
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.88
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.88
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.88
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.88
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.88
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.88
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.88
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.88
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.88
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.88
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.88
COG3746	Phosphate-selective porin	Inorganic ion transport and metabolism [P]	0.88
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.88
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.37 %
Unclassified	root	N/A	33.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	29.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.42 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	29.20 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.77 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.88 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	15.04 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	10.62 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.88 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	15.04 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.62 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	1.77 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.88 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	15.04 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.62 %
Thioalkalivibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio	1.77 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.88 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.62 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	7.08 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	4.42 %
Thioalkalivibrio paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	0.88 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.88 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.88 %
Thioalkalivibrio nitratireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	0.88 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.62 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7.08 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	4.42 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.88 %
Gemmatimonas groenlandica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas groenlandica	0.88 %
Thioalkalivibrio paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	0.88 %
Thioalkalivibrio nitratireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	0.88 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.63 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	10.62 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7.08 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	4.42 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.88 %
Gemmatimonas groenlandica	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas groenlandica	0.88 %
Thioalkalivibrio paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	0.88 %
Thioalkalivibrio nitratireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	0.88 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_71046	All Organisms → cellular organisms → Bacteria	2395	Open in IMG/M
3300003267\|soilL1_10020933	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4659	Open in IMG/M
3300003267\|soilL1_10035229	All Organisms → cellular organisms → Bacteria	1598	Open in IMG/M
3300003323\|rootH1_10328973	All Organisms → cellular organisms → Bacteria	1618	Open in IMG/M
3300003324\|soilH2_10133205	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4257	Open in IMG/M
3300003324\|soilH2_10187162	All Organisms → cellular organisms → Bacteria	3212	Open in IMG/M
3300003324\|soilH2_10336648	All Organisms → cellular organisms → Bacteria	2027	Open in IMG/M
3300004157\|Ga0062590_102489665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	548	Open in IMG/M
3300004479\|Ga0062595_100755508	Not Available	792	Open in IMG/M
3300004799\|Ga0058863_10779847	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	917	Open in IMG/M
3300004803\|Ga0058862_10878409	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1258	Open in IMG/M
3300005329\|Ga0070683_100027469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	5132	Open in IMG/M
3300005329\|Ga0070683_100120991	All Organisms → cellular organisms → Bacteria	2473	Open in IMG/M
3300005329\|Ga0070683_100151800	All Organisms → cellular organisms → Bacteria	2196	Open in IMG/M
3300005336\|Ga0070680_100958761	Not Available	738	Open in IMG/M
3300005435\|Ga0070714_100142451	All Organisms → cellular organisms → Bacteria	2153	Open in IMG/M
3300005436\|Ga0070713_100122247	All Organisms → cellular organisms → Bacteria	2285	Open in IMG/M
3300005437\|Ga0070710_11271156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio paradoxus	546	Open in IMG/M
3300005445\|Ga0070708_100000021	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	114318	Open in IMG/M
3300005458\|Ga0070681_10434985	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1224	Open in IMG/M
3300005529\|Ga0070741_11232806	Not Available	629	Open in IMG/M
3300005535\|Ga0070684_100959341	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	802	Open in IMG/M
3300005535\|Ga0070684_101706665	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005535\|Ga0070684_102342547	Not Available	503	Open in IMG/M
3300005564\|Ga0070664_100531573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1086	Open in IMG/M
3300005564\|Ga0070664_101536056	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	630	Open in IMG/M
3300005577\|Ga0068857_100048887	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	3752	Open in IMG/M
3300005587\|Ga0066654_10456829	Not Available	698	Open in IMG/M
3300005614\|Ga0068856_101505224	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300005885\|Ga0075284_1008972	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300005888\|Ga0075289_1036184	Not Available	747	Open in IMG/M
3300005899\|Ga0075271_10028468	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300005904\|Ga0075280_10032848	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300009545\|Ga0105237_11254179	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	748	Open in IMG/M
3300009551\|Ga0105238_10685866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1036	Open in IMG/M
3300010041\|Ga0126312_10863836	Not Available	658	Open in IMG/M
3300010042\|Ga0126314_10664725	Not Available	762	Open in IMG/M
3300010152\|Ga0126318_11024207	Not Available	555	Open in IMG/M
3300010166\|Ga0126306_11309870	Not Available	598	Open in IMG/M
3300010371\|Ga0134125_11998898	Not Available	630	Open in IMG/M
3300010373\|Ga0134128_10116055	All Organisms → cellular organisms → Bacteria	3038	Open in IMG/M
3300010373\|Ga0134128_10129918	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	2854	Open in IMG/M
3300010396\|Ga0134126_10187058	All Organisms → cellular organisms → Bacteria	2487	Open in IMG/M
3300010396\|Ga0134126_10839087	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1036	Open in IMG/M
3300012212\|Ga0150985_100194216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300012212\|Ga0150985_102869418	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	658	Open in IMG/M
3300012212\|Ga0150985_103330420	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	729	Open in IMG/M
3300012212\|Ga0150985_104175601	Not Available	637	Open in IMG/M
3300012212\|Ga0150985_105872188	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	608	Open in IMG/M
3300012212\|Ga0150985_109550423	All Organisms → cellular organisms → Bacteria	1214	Open in IMG/M
3300012212\|Ga0150985_112072314	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1756	Open in IMG/M
3300012212\|Ga0150985_114056917	Not Available	696	Open in IMG/M
3300012212\|Ga0150985_121377351	Not Available	731	Open in IMG/M
3300012212\|Ga0150985_121747936	Not Available	657	Open in IMG/M
3300012354\|Ga0137366_11012570	Not Available	577	Open in IMG/M
3300012469\|Ga0150984_105525940	Not Available	893	Open in IMG/M
3300012469\|Ga0150984_108636798	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas groenlandica	791	Open in IMG/M
3300012469\|Ga0150984_110510072	Not Available	564	Open in IMG/M
3300012469\|Ga0150984_111688210	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	606	Open in IMG/M
3300012469\|Ga0150984_121555488	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	899	Open in IMG/M
3300012931\|Ga0153915_10005612	All Organisms → cellular organisms → Bacteria	11682	Open in IMG/M
3300012931\|Ga0153915_10161848	Not Available	2433	Open in IMG/M
3300013104\|Ga0157370_10001328	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	30732	Open in IMG/M
3300013104\|Ga0157370_10797768	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300013296\|Ga0157374_12245053	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	573	Open in IMG/M
3300013307\|Ga0157372_10144599	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2742	Open in IMG/M
3300013307\|Ga0157372_13428791	Not Available	504	Open in IMG/M
3300020069\|Ga0197907_10035389	Not Available	561	Open in IMG/M
3300020070\|Ga0206356_11062079	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	639	Open in IMG/M
3300020075\|Ga0206349_1157878	Not Available	699	Open in IMG/M
3300020076\|Ga0206355_1634477	Not Available	604	Open in IMG/M
3300021445\|Ga0182009_10009649	All Organisms → cellular organisms → Bacteria	3297	Open in IMG/M
3300022467\|Ga0224712_10581156	Not Available	546	Open in IMG/M
3300025912\|Ga0207707_10002215	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	17569	Open in IMG/M
3300025917\|Ga0207660_10352385	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1180	Open in IMG/M
3300025917\|Ga0207660_10552129	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300025922\|Ga0207646_11468955	Not Available	591	Open in IMG/M
3300025924\|Ga0207694_10472695	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300025928\|Ga0207700_10281604	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1430	Open in IMG/M
3300025944\|Ga0207661_10078479	All Organisms → cellular organisms → Bacteria	2718	Open in IMG/M
3300025944\|Ga0207661_10169268	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300025945\|Ga0207679_11145772	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	714	Open in IMG/M
3300025998\|Ga0208651_1000342	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1893	Open in IMG/M
3300026009\|Ga0208530_1003036	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300026034\|Ga0208773_1032715	Not Available	671	Open in IMG/M
3300026078\|Ga0207702_12403306	Not Available	514	Open in IMG/M
3300026116\|Ga0207674_10131684	All Organisms → cellular organisms → Bacteria	2463	Open in IMG/M
3300027725\|Ga0209178_1274628	Not Available	615	Open in IMG/M
3300030511\|Ga0268241_10019949	Not Available	1310	Open in IMG/M
3300030515\|Ga0268254_10286990	Not Available	543	Open in IMG/M
3300031716\|Ga0310813_10056044	All Organisms → cellular organisms → Bacteria	2923	Open in IMG/M
3300031716\|Ga0310813_10678664	Not Available	918	Open in IMG/M
3300031716\|Ga0310813_11540711	Not Available	620	Open in IMG/M
3300031716\|Ga0310813_12381336	Not Available	502	Open in IMG/M
3300031938\|Ga0308175_100008239	All Organisms → cellular organisms → Bacteria → Proteobacteria	7664	Open in IMG/M
3300031938\|Ga0308175_100014422	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	6091	Open in IMG/M
3300031938\|Ga0308175_100072531	Not Available	3072	Open in IMG/M
3300031938\|Ga0308175_100331126	All Organisms → cellular organisms → Bacteria → Proteobacteria	1565	Open in IMG/M
3300031938\|Ga0308175_100356137	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300031938\|Ga0308175_100566415	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300031938\|Ga0308175_101195601	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300031938\|Ga0308175_101464297	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300031939\|Ga0308174_10673879	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	861	Open in IMG/M
3300031996\|Ga0308176_10081004	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2786	Open in IMG/M
3300031996\|Ga0308176_10756071	Not Available	1012	Open in IMG/M
3300031996\|Ga0308176_11339787	Not Available	761	Open in IMG/M
3300032074\|Ga0308173_10244696	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300032074\|Ga0308173_10512088	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300033412\|Ga0310810_10274572	Not Available	1833	Open in IMG/M
3300033412\|Ga0310810_10412671	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1387	Open in IMG/M
3300033475\|Ga0310811_10556090	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	1174	Open in IMG/M
3300033513\|Ga0316628_101095534	Not Available	1059	Open in IMG/M
3300034268\|Ga0372943_0027561	All Organisms → cellular organisms → Bacteria	3063	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.91%
Host-Associated	Host-Associated	30.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.26%
Plants	Host-Associated → Plants	28.32%
Aquatic	Environmental → Aquatic	2.65%
Human	Host-Associated → Human	1.77%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.26%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.39%
Freshwater	Environmental → Aquatic → Freshwater	2.65%
Digestive System	Host-Associated → Human → Digestive System	1.77%
Rhizome	Host-Associated → Plants → Rhizome	0.89%
Phylloplane	Host-Associated → Plants → Phylloplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.36%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.77%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.77%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.81%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.77%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.77%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.39%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	11.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	8.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.19%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	6.19%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	4.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.42%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.65%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.65%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.77%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.77%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003323	Sugarcane root Sample H1	Host-Associated	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005885	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005899	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302	Environmental	Open in IMG/M
3300005904	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025998	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_204 (SPAdes)	Environmental	Open in IMG/M
3300026009	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_401 (SPAdes)	Environmental	Open in IMG/M
3300026034	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_302 (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030515	Agave microbial communities from Guanajuato, Mexico - Or.Sf.rz (v2)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_01134280	2199352024	Soil	MAIIDDPDFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASDEVRVFDQNVAVLREKIRRIEIDIEKTRLSIEVAIAGGVDRAIGLVGQRGAA
soilL1_100209336	3300003267	Sugarcane Root And Bulk Soil	MAIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQRESGRASRTAAVQRARASDEVRAFDQNVASLRERIRRIEIEIERDRLSIDVAIAGASDRGANLTAHRGAA*
soilL1_100352292	3300003267	Sugarcane Root And Bulk Soil	MSVVDDSDFLTNRAKQLTAVNELVNLRTRLVDLQAELLNRQQERRQIILRVAEQDLARQEASGRASRTAAIARARASEEVRTFDRSVSSLRERIRRLEIDVERVRLSIAVAIAGSERAIGLVGQRGAA*
rootH1_103289731	3300003323	Sugarcane Root And Bulk Soil	MAIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQRESGRASRTAAVQRARASDEVRAFDQNVASLRERIRRLEIEIERDRLSIDVAIAGASDRGANLTAHRGAA*
soilH2_101332054	3300003324	Sugarcane Root And Bulk Soil	MPIIDDPDFLTNRTKQLAAVQELAHLRSRLVDLQTELLNRMHERRQIIQRVAEQDLVHQRESGRASRTAAAQRARASDEVRSFDQNVSALREKIRRLEIDIERTRLSIEVAVAGGVERTIGLVAQRGAA*
soilH2_101871624	3300003324	Sugarcane Root And Bulk Soil	MAIVDDPDFLNNRAKQLLAVQELAHLRSRLVDLQTELLNRMHERRQIIQRVVEQDLTRQQESGRASRTAALQRARASEDVRTFDHNVEGLREKIRRLEIEIERVRLSLDVAVAGAVDRTIALVTNRGAA*
soilH2_103366483	3300003324	Sugarcane Root And Bulk Soil	MSIIDDQDFLTSRAKQLTAVTELANLRTRLVDLQAELLNRQQERRQIILRVAEQDLARQEASGRSNRSAAIARARASEEVRTFDRSVSSLRERIRRLEIDVERVRLSTAVAIAGSERSIGLVGQRGAA*
Ga0062590_1024896651	3300004157	Soil	MSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQRESGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERNRLSIDVAIAGAADRATNLTAHRGAA*
Ga0062595_1007555081	3300004479	Soil	MSVIDDPDFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRESGRGSRTSAIERARASEDVRVFDQNVAVLREKIRRIDIDIEQTRLSIEVAVSGGIDRTMGLVAQRGAA*
Ga0058863_107798471	3300004799	Host-Associated	GGNIMSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAISGGPDRLLGLVDKRGAA*
Ga0058862_108784093	3300004803	Host-Associated	ADASRGGNIMSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAISGGPDRLLGLVDKRGAA*
Ga0070683_1000274697	3300005329	Corn Rhizosphere	MAIIHDPDFLTSRSKQLAAVHELAHLRSRLVDLQSELLTRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASEEVRVFDQNVAVLREKIRRIEIDIEQTRLSIEVAIAGGVDRTIGLVGQRGAA*
Ga0070683_1001209913	3300005329	Corn Rhizosphere	MSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAISGGPDRLLGLVDKRGAA*
Ga0070683_1001518002	3300005329	Corn Rhizosphere	MAVIDDPDFLTSRAKQLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNVATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA*
Ga0070680_1009587612	3300005336	Corn Rhizosphere	MSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAISGGPDRLMGLVDKRGAA*
Ga0070714_1001424513	3300005435	Agricultural Soil	MSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQAAGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIEVAIAGASERTLGVMPQRGAASAA*
Ga0070713_1001222472	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQAAGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIEVAIAGASERTFGVMPQRGAASAA*
Ga0070710_112711561	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	IMSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQAAGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIEVAIAGASERTLGVMPQRGAASAA*
Ga0070708_10000002161	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSVIDDPDFLTSRPKQLVAVAELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLEHQRESGRASRTSAIERARASDDVRVFDQNVAVLREKIRRIDIDIERTRLSIEVAVSGGVDRTMGLVGQRGAA*
Ga0070681_104349852	3300005458	Corn Rhizosphere	MSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGATERGTNLTAHRGAA*
Ga0070741_112328061	3300005529	Surface Soil	MPIIDDPDFLTSRAKQLAAVHELAHLRTRLVDSQSELLNRMHERRQIIQRVVEQDLARQQESGRGSRTAAMQRARASDEVRSFDQNVASLRDKIRRLEIEIERARLSIEVAVAGASDRAIGLVAQRGAA*
Ga0070684_1009593412	3300005535	Corn Rhizosphere	MPIIDDPDFLTNRAKQLGAVDELAHLRTRLVDLQGELLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARTSDDVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRPLDLTPRRGAA*
Ga0070684_1017066652	3300005535	Corn Rhizosphere	MSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAI
Ga0070684_1023425471	3300005535	Corn Rhizosphere	MSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAAERGTNLTAHRGAA*
Ga0070664_1005315732	3300005564	Corn Rhizosphere	MSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAAERGT
Ga0070664_1015360562	3300005564	Corn Rhizosphere	MPIIDDPDFLTNRAKQLGAVDELAHLRTRLVDLQGELLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARASDDVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRPLDLTPRRGAA*
Ga0068857_1000488877	3300005577	Corn Rhizosphere	MAIIHDPDFLTSRSKQLAAVHELAHLRSRLVDLQSELLTRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASEEVRVFDQNVAVLREKIRRIEIDIEQTRLSIEVAIAGGVDRAIGLVGQRGAA*
Ga0066654_104568291	3300005587	Soil	GGIMSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQAAGRASRTAAAQRARASEEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGATDRSMNIIAQRGAA*
Ga0068856_1015052242	3300005614	Corn Rhizosphere	FLTNRTKQLAAVQELAHLRSRLVDLQTGLLNRMHERRQIIQRVAEQDLARQRESGRASRTAAAQRARASDEVRSFDQNVSVLREKIRRLEIDVERTRLSIEVAVTGGAERTIGLVTQRGAA*
Ga0075284_10089721	3300005885	Rice Paddy Soil	SAVHELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLERQQEGGRSSRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGATDRTSGLVAQRGAA*
Ga0075289_10361841	3300005888	Rice Paddy Soil	MPVIDDPDFLTNRTKQLSAVHELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLERQQEGGRSSRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGATDRTSGLVAQRGAA*
Ga0075271_100284682	3300005899	Rice Paddy Soil	MSVIDDPDFLTSRPKQLAAVDELAHLRNRLVDLQSELLNRMHERRQIIQRVAEQDLVRQEQSGRSSRTTALQRARASEEVRVFDQNVASLREKIRRIEVEIERARLSIEVAVAGGVDRTIGLVAQRGAA*
Ga0075280_100328481	3300005904	Rice Paddy Soil	MPVIDDPDFLTNRTKQLSAVHELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLERQQEGGRSSRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGATDRTSGLVAQRG
Ga0105237_112541791	3300009545	Corn Rhizosphere	MAIIHDPDFLTSRSKQLAAVHELAHLRGRLVDLQSELLTRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASEEVRVFDQNVAVLREKIRRIDIDIEQTRLSIEVAIAGSIDRTIGLVAQRGAA*
Ga0105238_106858661	3300009551	Corn Rhizosphere	PMSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAAERGTNLTAHRGAA*
Ga0126312_108638361	3300010041	Serpentine Soil	MSVIDEADFLTSRSKQLAAVAELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLSRQRESGRASRTAALQRARASEDVRVFDQNVAALREKIRRLEIDIERVRLSIEVAIAGSADRAIGLMPQR
Ga0126314_106647251	3300010042	Serpentine Soil	MSVIDEADFLTSRSKQLTAVHELAHVRSRLVDLQAELLNRMHERRQIIQRVAEQDLTRQQESGRSSRTAALQRARASEEVRSFDQNVAALREKIHRLEIEIERLRLSVEVAIAGGVDRSIGLVAQRGAA*
Ga0126318_110242071	3300010152	Soil	EIMPIIDDPDFLTNRSKQLSAVHELAHLRARLVDLQTELLSRMHERRQIIQRVAEQDLARQQEHGRSSRTAAQQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGAADRTIGLVAQRGAA*
Ga0126306_113098701	3300010166	Serpentine Soil	MSVIDEADFLTSRSKQLAAVAELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLTRQRESGRASRTAALQRARASEDVRVFDQNVAALREKIRRLEIDIERVRLSIEVAIAGSADRAIGLMPQRGAA*
Ga0134125_119988982	3300010371	Terrestrial Soil	MSVIDDTDFLTNRTKQLAGVGELAHLRTRLVDLQSELLNRMQERRQLIQRLAEQDLTRQRESGRASRTAAVQRARASEEVRVFDQNVASLRERIRRIEIDIERVRLSIEVAITGGVDRTLELANRRGAA*
Ga0134128_101160556	3300010373	Terrestrial Soil	MSTVDDSDFLTNRAKQLAAVAELASLRTRLTDLRAELLNRMQERRQIIQRVVEQDLARQRESGRASRTAAMQRARASEDVRSFDQSLATLRERIQRIEIDVERVRLSLEVAVAGAAA*
Ga0134128_101299181	3300010373	Terrestrial Soil	MPIIDDADFLTNRSKQLGAVHELASLRTRLVDLQTELLNRMHERRQLIERLAEQDVADQQRSGTARASRTAAMQRARASEDVRTFDHNVAALREKIRRLEIDIERERLSIDVAIAGSADRAV
Ga0134126_101870582	3300010396	Terrestrial Soil	MSTVDDSDFLTSRAKQLAAVAELAHLRTRLTDLRAELLSRMQERRQIIQRVVDQDLARQREFGRSSRTAAMQRARASDDVRSFDQNVAQLRERIQRLEIEVERVRLSLEVAVAGAAA*
Ga0134126_108390871	3300010396	Terrestrial Soil	MNLNRLKYPGGDIMPIIDDPDFLTNRTKQLSAVHELSHLRSRLVDLQSELLNRMQERRQIIQRVAEQDLARQKEAGRASRSAALQRARASEEVRTFDQNVASLRERIRRLEIDIERYRLSIEVAIAGAADRSIGLMRQRGAA*
Ga0150985_1001942161	3300012212	Avena Fatua Rhizosphere	TMSVIDDPDFLTNRNKQLSAVRELANLRERLVDLQAELLNRMHERRQIIQRVAEQDLTRQQQAGRASRTAALQRARASDEVRSFDQNVATSRERIRRLEIEIERARLSIDVAIA*
Ga0150985_1028694182	3300012212	Avena Fatua Rhizosphere	MPIIDDPDFLTNRSKQLGAVDELAHLRTRLVDLQGELLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARASDEVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRSLDLTPRRGAA*
Ga0150985_1033304202	3300012212	Avena Fatua Rhizosphere	AVDELAHLRTRLVDLQGELLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARASDEVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRSLDLTPRRGAA*
Ga0150985_1041756012	3300012212	Avena Fatua Rhizosphere	MSIIDDPDFLTNRSKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQQQAGRASRTAATQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAADRAPGLLAQRGAA*
Ga0150985_1058721881	3300012212	Avena Fatua Rhizosphere	AEDLMPIIDDPDFLTNRSKQLGAVDELAHLRTRLVDLQGELLNRMNERRQIIQRVVEQDVARQQQAGRASRTAAVQRARASDEVRTFDQNVASLREKIRRLEIEIERERLSIEIAITTGTDRPMDLTPRRGAA*
Ga0150985_1095504233	3300012212	Avena Fatua Rhizosphere	VPAMPAVDETDFLTNRARQLTAVHELAHLRSRFVDLQSELLNRMQERRQIIQRVVEQDVSRQQASGRASRTAALQRARASEDVRTFDQNVAALREKLRRLEIEVERTRLSVEVAIAASTDRAIGLVQQRGAA*
Ga0150985_1120723143	3300012212	Avena Fatua Rhizosphere	VSVVDDADFLTNRAKQLAAVNDLAHLRTRLVDLQAELLNRQQERRQVVQRVAEQDLARQEASGRSSRTAAAARARASEEVRTFDRSVASLRERIRLLEIDVERIRLSIEVAIAGSADRSIGLVGQRGAA*
Ga0150985_1140569171	3300012212	Avena Fatua Rhizosphere	MPIIDDPDFLTNRTKQLSAVQELAHLRTRLVDLQSELLNRMNERRQIIQRVVEQDVARQQQAGRASRTAALQRARASEEVRTFDHHVASLREKIRRLEIEIERERLSIEVAIVTGSDRSLGLVAQRGAA*
Ga0150985_1213773511	3300012212	Avena Fatua Rhizosphere	MPIIDDPDFLTNRTKQLSAVQELAHLRTRLVDLQSELLNRMNERRQIIQRVVEQDVARQQQAGRASRTAALQRARASEEVRTFDHHVASLREKIRRLEIEIERERLSIEVAIVTGSDRSIGLVAQRGAA*
Ga0150985_1217479361	3300012212	Avena Fatua Rhizosphere	MSVIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQQQAGRASRTAATQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAADRAPGLVAQRGAA*
Ga0137366_110125701	3300012354	Vadose Zone Soil	MSVIDDPDFLTSRPKQLAAVDELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRESGRGSRASAVDRARASEDVRVFDQNVAALREKIRRIDIDIERTRLSIEVAVAGGVDRTMGLVAQRGAA*
Ga0150984_1055259401	3300012469	Avena Fatua Rhizosphere	MPVIDDPDFLTNRTKQLSAVQELAHLRTRLVDLQSELLNRMNERRQIIQRVVEQDVARQQQAGRASRTAALQRARASEEVRTFDHHVASLREKIRRLEIEIERERLSIEVAIVTGSDRSIGLVAQRGAA*
Ga0150984_1086367982	3300012469	Avena Fatua Rhizosphere	VIDDPDFLTNRNKQLSAVRELANLRERLVDLQAELLNRMHERRQIIQRVAEQDLTRQQQAGRASRTAALQRARASDEVRSFDQNVATSRERIRRLEIEIERARLSIDVAIAGADRSLGLLAQRGAA*
Ga0150984_1105100721	3300012469	Avena Fatua Rhizosphere	MSIIDDPDFLTNRSKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQQQAGRASRTAATQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVA
Ga0150984_1116882102	3300012469	Avena Fatua Rhizosphere	AEALMPIIDDPDFLTNRSKQLGAVAEIAHLRTSLVDLHGKLLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARASDEVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRSLDLTPRRGAA*
Ga0150984_1215554881	3300012469	Avena Fatua Rhizosphere	AEDPMPIIDDPDFLTNRSKQLGAVDELAHLRTRLVDLQGELLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARASDEVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRSLDLTPRRGAA*
Ga0153915_100056127	3300012931	Freshwater Wetlands	MAVIDDPDFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRESGRASRTSAVDRARASEEVRVFDQNLAILREKTRRIDIDIERTRLSVEVAVAGAVDRTIGLVSQRGAA*
Ga0153915_101618481	3300012931	Freshwater Wetlands	MPIIDDPDFLTNRTKQLAAVQDLAHVRGRLVDLQTELLNRMHERRQIIQRVSEQDIDRQRQAGRSSRTAATQRARASDEVRAFDQNVSSLREKIRRLEIDIERTRLSIEVAVSGGVERTIGLVSQRGAA*
Ga0157370_1000132824	3300013104	Corn Rhizosphere	MAVIDDPDFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQREHGRASRTSAVDRARASEEVRVFDQNVASLREKIRRIDIEIERARLSIEVAVAGGLDRTIGLVAQRGAA*
Ga0157370_107977682	3300013104	Corn Rhizosphere	MSTVDDSDFLTNRTKQLAAVAELANLRTRLTDLRAELLNRMQERRQIIQRVVEQDLARQRESGRASRTAAMQRARASEDVRSFDQSLATLRERIQRIEIDVERVRLSLEVAVAGAAA*
Ga0157374_122450531	3300013296	Miscanthus Rhizosphere	QLGAVDELAHTRTRLVDLQGELLNRMNERRQIIQRVVEQDVARQQQAGRASRTAAVQRARASDEVRTFDQNVASLREKIRRLEIEIERERLSIEIAITTGTDRPLDLTPRRGAA*
Ga0157372_101445991	3300013307	Corn Rhizosphere	MAVIDDPDFLTSRAKHLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNVATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA*
Ga0157372_134287911	3300013307	Corn Rhizosphere	MSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRL
Ga0197907_100353892	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	RAKQLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNVATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA
Ga0206356_110620792	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGATERGTNLTAHRGAA
Ga0206349_11578781	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	KSTMAVIDDPDFLTSRAKQLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNVATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA
Ga0206355_16344772	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	MAVIDDPDFLTSRAKQLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNVATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA
Ga0182009_100096494	3300021445	Soil	MSVIDDPDFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRESGRGSRTSAIERARASEDVRVFDQNVAVLREKIRRIDIDIERTRLSIEVAISGGVDRTLGLVAQRGAA
Ga0224712_105811561	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	STMAVIDDPDFLTSRAKQLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNVATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA
Ga0207707_100022158	3300025912	Corn Rhizosphere	MSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQRESGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERNRLSIDVAIAGAADRATNLTAHRGAA
Ga0207660_103523852	3300025917	Corn Rhizosphere	MSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQRESGRASRTAAAQRARTSDEVRSFDQNVASLRERIRRLEIEIERNRLSIDVAIAGAADRATNLTAHRGAA
Ga0207660_105521293	3300025917	Corn Rhizosphere	MSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAIS
Ga0207646_114689551	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	AHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLEHQRESGRASRTSAIERARASDDVRVFDQNVAVLREKIRRIDIDIERTRLSIEVAVSGGVDRTMGLVGQRGAA
Ga0207694_104726952	3300025924	Corn Rhizosphere	MSIIDDPDFLTNRVKQLSAVRELAGLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAAERGTNLTAHRGAA
Ga0207700_102816042	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQAAGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIEVAIAGASERTFGVMPQRGAASAA
Ga0207661_100784791	3300025944	Corn Rhizosphere	MAIIHDPDFLTSRSKQLAAVHELAHLRSRLVDLQSELLTRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASEEVRVFDQNVAVLREKIRRIEIDIEQTRLSIEVAIAGGVDRTIGLVGQ
Ga0207661_101692682	3300025944	Corn Rhizosphere	MSIVDDSDFLTNRTKQLSAVNELAHQRTRMVDLQAELLTRMNERRQIIQRLAEQDLVRQREAGRASRTAAGQRARASEEVRVFDQNLSALRERIRRIEIDVERLRLSIDVAISGGPDRLLGLVDKRGAA
Ga0207679_111457722	3300025945	Corn Rhizosphere	GLRERLVDLQSELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAAERGTNLTAHRGAA
Ga0208651_10003422	3300025998	Rice Paddy Soil	MPVIDDPDFLTNRTKQLSAVHELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLERQQEGGRSSRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGATDRTSGLVAQRGAA
Ga0208530_10030361	3300026009	Rice Paddy Soil	SAVHELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLERQQEGGRSSRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIAGATDRTSGLVAQRGAA
Ga0208773_10327151	3300026034	Rice Paddy Soil	MSVIDDPDFLTSRPKQLAAVDELAHLRNRLVDLQSELLNRMHERRQIIQRVAEQDLVRQEQSGRSSRTTALQRARASEEVRVFDQNVASLREKIRRIEVEIERARLSIEVAVAGGVDRTIGLVAQRGAA
Ga0207702_124033061	3300026078	Corn Rhizosphere	TNRTKQLAAVQELAHLRSRLVDLQTGLLNRMHERRQIIQRVAEQDLARQRESGRASRTAAAQRARASDEVRSFDQNVSVLREKIRRLEIDVERTRLSIEVAVTGGAERTIGLVTQRGAA
Ga0207674_101316841	3300026116	Corn Rhizosphere	MAIIHDPDFLTSRSKQLAAVHELAHLRSRLVDLQSELLTRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASEEVRVFDQNVAVLREKIRRIEIDIEQTRLSIEVAIAGGVDRTIGLVGQRGAA
Ga0209178_12746281	3300027725	Agricultural Soil	RAASHLHDFALGSNPGGELMPIIDEPDFLTNRTKQLHAVQELAHLRARLVDLQSELLNRMHERRQIIQRVAEQDLTRQQQGGRASRTAAMQRARASEEVRSFDQNVAALRDKIRRLEIEIERDRLSIEVAIAGAADRTIGLVAQRGAA
Ga0268241_100199491	3300030511	Soil	MSIIDDPDFLTNPTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQQSGRASRTAAAQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGASD
Ga0268254_102869901	3300030515	Agave	MHTCGTSPGGEFMPIIDDPDFLTNRSKQLGAVHELAHLRTRLVDLQTELLNRMHERRQIIERVAEQDLTRQQEGGRASRTAAMQRARASEEVRSFDQNVAALREKIRRLEIEIERDRLSIEVAIASAADRSIGVVAQRGAA
Ga0310813_100560441	3300031716	Soil	KQLAAVQELAHLRSRLVDLQTELLNRMQERRQIIQRVAEQDLARQRESGRSSRTAAAQRARASDEVRSFDQNVSSLREKIRRLEIEVERTRLSIEVAVTGGVERTIGLVTQRGAA
Ga0310813_106786642	3300031716	Soil	MSVIDDPDFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRESGRGSRTSAIERARASEDVRVFDQNVAVLREKIRRIDIDIEQTRLSIEVAISGGVDRTL
Ga0310813_115407112	3300031716	Soil	MSIIDDPDFLTNRTKQLAAVQELAHLRSRLVDLQTELLNRMQERRQIIERVAAQDLDRQRETGRASRTAATQRARASDDVRAFDQNVSLLREKIRRLEIDIERTRLSIEVAVSGGVERAIGLVSQRGAA
Ga0310813_123813361	3300031716	Soil	MSIIEDADFLTNRTKQLAAVQELAHLRSRLVDLQTELLNRMHERRQIIQRVAEQDLARQRESGRASRTAAAQRARASDEVRSFDQNVSALREKIRRLEIDVERTRLSIEVAVTGGVERTIGLVAQRGAA
Ga0308175_1000082395	3300031938	Soil	MSVIDDSDFLTNRTKQLAAVNELAHLQTRLIDLQAELLNRMQERRQVMQRATEQDLVRQRQMGRASRTAALQRARASEEVRDFDRSVSSLRERIRRLEVDVDRTRLSIQVAISTSERTIGLVGQRGAA
Ga0308175_1000144228	3300031938	Soil	QLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAADRGANLTAHRGAA
Ga0308175_1000725312	3300031938	Soil	MAIIDDPDFLTSRSKQLAAVHELAHLRSRLVDLQSELLTRMHERRQIIQRVAEQDLERQRVSGRASRTSAVDRARASEEVRVFDQNVAVLREKIRRIEIDIEQTRLSIEVAIAGGVDRAIGLVGQRGAA
Ga0308175_1003311262	3300031938	Soil	MPVVDEADFLTNRTRQLGAVHELAHLRSRFVDLQTELLNRMQERRQIIQRVVEQDLARQEEHGRASRTAALQRARASDDVRVFDQNVAMLREKLRRLEIEIERTRLSIEVAIAGTADRALGLVAQRGAA
Ga0308175_1003561373	3300031938	Soil	MSVVDDADFLTSPAKQLAAVNELAHQRSRLVDLQSELLNRMHERRQIIQRVAEQDLARQEQSGRASRTAAAQRARASEEVRTFDQNVALLRERMRRIEIDVERLRLSIDVAIAGAAGEERPIALGRQRGVA
Ga0308175_1005664152	3300031938	Soil	MAVIDDADFLTSRAKQLAAVQELAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLERQRESGRGSRTAAVERARASDEVRVFDQNVASLRERIRRIEIDIERTRLSIEVAVAGGPDRGFGLVAQRGAA
Ga0308175_1011956011	3300031938	Soil	MSVVDDPDFLTNRSKQLVAVHELAHLRSRLVDLQSELLNRMQERRQIIQRVGEQDLARQRESGRASRTAALQRARASEEVRSFDQNVAALREKIRRLEIDIEAARLSIEVAVAGSADRAIGLVTQRGAA
Ga0308175_1014642972	3300031938	Soil	MPGIDETDFLTNRARQLTAVHELAHLRSRLVDLQAELLNRMQERRQIIQRVVEQDLARQTERGRASRTTALQRARASEDVRVFDQSAASLRERIHRLEIEIERTRLSIEVAIAGSADRAIGLVTQRGAA
Ga0308174_106738792	3300031939	Soil	MSVVDDSDFLTSAAKQLAAVNELAHQRSRLVDLQSELLNRMHERRQIIQRVAEQDLARQEASGRASRTAAVQRARASEEVRVFDQNVASLRERIRRIEVEVERVRLSIDVALNTGGDERS
Ga0308176_100810044	3300031996	Soil	MSIIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQIIQRVAEQDLTRQQESGRASRTAAVQRARASDEVRSFDQNVASLRERIRRLEIEIERDRLSIDVAIAGAADRGANLTAHRGAA
Ga0308176_107560712	3300031996	Soil	MAVIDDPDFLTSRAKQLAAVHDLAHLRSRLVDLQSELLSRMHERRQMIQRVAEQDLEHQRESGRGSRTAAVERARASEEVRVFDQNAATLREKIRRIEIDIERTRLSIEVAIAGVDRGIGLVAQRGAA
Ga0308176_113397872	3300031996	Soil	MAVIDDPDFLTSRAKQLAAVHELAHLRSRLVDLQSELLTRMHERRQMIQQDLERQREHGRASRTAAVERARASEEVRVFDQNVASLREKIRRIEIDIERTRLSIEVAIAGGPDRGIGLVAQRGAA
Ga0308173_102446962	3300032074	Soil	MPIIDDPDFLTNRSKQLGAVHELAHLRTRLVDLQGELLNRMNERRQLIQRVVEQDVAKQQQAGRASRTAAVQRARASDEVRSFDQNMTSLREKIRRLEIEIERERLSIEIAITTGTDRSLDLTPRRGAA
Ga0308173_105120882	3300032074	Soil	MSVVDDSDFLTSAAKQLAAVNELAHQRSRLVDLQSELLNRMHERRQIIQRVAEQDLARQEASGRASRTAAVQRARASEEVRVFDQNVASLRERIRRIEIEVERVRLSIDVALNTGGDERSLSITRQRGAA
Ga0310810_102745722	3300033412	Soil	MPIIEDPDFLTNRTKQLAAVQELAHLRSRLVDLQTELLNRMQERRQIIQRVAEQDLARQRESGRSSRTAAAQRARASDEVRSFDQNVSSLREKIRRLEIEVERTRLSIEVAVTGGVERTIGLVTQRGAA
Ga0310810_104126712	3300033412	Soil	MPIIDDPDFLTNRTKQLAAVQELAHLRSRLVDLQTELLNRMQERRQIIERVAAQDLDRQRETGRASRTAATQRARASDDVRAFDQNVSLLREKIRRLEIDIERTRLSIEVAVSGGVERAIGLVSQRGAA
Ga0310811_105560903	3300033475	Soil	DFLTSRPKQLAAVHELAHLRSRLVDLQSELLSRMHERRQIIQRVAEQDLERQRESGRGSRTSAIERARASEDVRVFDQNVAMLREKIRRIDIDIEQTRLSIEVAVSGGIDRTMGLVAQRGAA
Ga0316628_1010955341	3300033513	Soil	MPIIDDPDFLTNRTKQLAAVRELDHLRNRLVDLQTELLNRMHERRQIIERVSEQDLDRQRQTGRSSRTAATQRARASDEVRAFDQNVSSLREKIRRLEIDIERTRLSIEVAVSGGVERTIGLVSQRGAA
Ga0372943_0027561_2625_3014	3300034268	Soil	MSVIDDPDFLTNRTKQLSAVRELANLRERLVDLQSELLNRMHERRQILQRVAEQDLARQQQSGRASRTAAGQRARASDEVRSFDQNVSSLRERIRRLEIEIERERLSIDVAVAGGLDRTLGLVAERGAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083445

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences