Metagenome / Metatranscriptome Family F083958

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083958
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	101 residues
Representative Sequence	MVQITERASAELRRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPASSGAGFTLRWR
Number of Associated Samples	85
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.06 %
% of genes near scaffold ends (potentially truncated)	32.14 %
% of genes from short scaffolds (< 2000 bps)	80.36 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.964 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.464 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.09% β-sheet: 19.66% Coil/Unstructured: 63.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13451	zf-trcl	16.96
PF00574	CLP_protease	15.18
PF01434	Peptidase_M41	5.36
PF05198	IF3_N	3.57
PF00487	FA_desaturase	1.79
PF07690	MFS_1	1.79
PF05977	MFS_3	1.79
PF06197	DUF998	0.89
PF00106	adh_short	0.89
PF03116	NQR2_RnfD_RnfE	0.89
PF01165	Ribosomal_S21	0.89
PF00296	Bac_luciferase	0.89
PF00953	Glycos_transf_4	0.89
PF04413	Glycos_transf_N	0.89
PF00920	ILVD_EDD	0.89
PF13556	HTH_30	0.89
PF07681	DoxX	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	30.36
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	30.36
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	15.18
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	5.36
COG0290	Translation initiation factor IF-3	Translation, ribosomal structure and biogenesis [J]	3.57
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.79
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	1.79
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.79
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	1.79
COG0472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	Cell wall/membrane/envelope biogenesis [M]	0.89
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.89
COG1519	3-deoxy-D-manno-octulosonic-acid transferase	Cell wall/membrane/envelope biogenesis [M]	0.89
COG1805	Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB	Energy production and conversion [C]	0.89
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.89
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.89
COG3371	Uncharacterized membrane protein	Function unknown [S]	0.89
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.89
COG4658	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfD subunit	Energy production and conversion [C]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.32 %
Unclassified	root	N/A	2.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.32 %
Unclassified	root	N/A	2.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.32 %
Unclassified	root	N/A	2.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	73.21 %
Unclassified	root	N/A	2.68 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	70.54 %
Unclassified	root	N/A	2.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	59.82 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	8.04 %
Unclassified	root	N/A	2.68 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.82 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	8.04 %
Unclassified	root	N/A	2.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.82 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	8.04 %
Unclassified	root	N/A	2.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.82 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	8.04 %
Unclassified	root	N/A	2.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.82 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	8.04 %
Unclassified	root	N/A	2.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.82 %
Sphaerobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter	2.68 %
Unclassified	root	N/A	2.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	59.82 %
Sphaerobacter thermophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	2.68 %
Unclassified	root	N/A	2.68 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.89 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_126404278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	584	Open in IMG/M
3300004799\|Ga0058863_11639957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	846	Open in IMG/M
3300005167\|Ga0066672_10033931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2816	Open in IMG/M
3300005167\|Ga0066672_10324931	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005172\|Ga0066683_10537549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	713	Open in IMG/M
3300005174\|Ga0066680_10210927	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300005176\|Ga0066679_10250944	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300005177\|Ga0066690_10313958	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300005178\|Ga0066688_10339076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	973	Open in IMG/M
3300005187\|Ga0066675_11456414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300005328\|Ga0070676_11251378	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005436\|Ga0070713_100171811	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300005437\|Ga0070710_11003252	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005439\|Ga0070711_100747594	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300005451\|Ga0066681_10151608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	1363	Open in IMG/M
3300005468\|Ga0070707_100577861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	1086	Open in IMG/M
3300005534\|Ga0070735_10896066	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300005537\|Ga0070730_10029510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	4155	Open in IMG/M
3300005537\|Ga0070730_10906978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	552	Open in IMG/M
3300005542\|Ga0070732_10069829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	2047	Open in IMG/M
3300005552\|Ga0066701_10316782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	967	Open in IMG/M
3300005553\|Ga0066695_10478919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	766	Open in IMG/M
3300005555\|Ga0066692_10803595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	578	Open in IMG/M
3300005557\|Ga0066704_10539484	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005559\|Ga0066700_10394324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	976	Open in IMG/M
3300005576\|Ga0066708_10510286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	775	Open in IMG/M
3300005764\|Ga0066903_100017064	All Organisms → cellular organisms → Bacteria	7485	Open in IMG/M
3300005764\|Ga0066903_101160101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1430	Open in IMG/M
3300005764\|Ga0066903_101244126	All Organisms → cellular organisms → Bacteria	1386	Open in IMG/M
3300005764\|Ga0066903_101840048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1158	Open in IMG/M
3300005764\|Ga0066903_103986147	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300006028\|Ga0070717_12079617	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300006797\|Ga0066659_11646532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300006914\|Ga0075436_100468588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	919	Open in IMG/M
3300006954\|Ga0079219_11188190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	658	Open in IMG/M
3300009012\|Ga0066710_101001192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1290	Open in IMG/M
3300009553\|Ga0105249_11960184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	658	Open in IMG/M
3300010037\|Ga0126304_10080050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2037	Open in IMG/M
3300010038\|Ga0126315_10065615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2008	Open in IMG/M
3300010038\|Ga0126315_10128442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1483	Open in IMG/M
3300010041\|Ga0126312_11352201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300010046\|Ga0126384_10721188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	885	Open in IMG/M
3300010047\|Ga0126382_10138688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1645	Open in IMG/M
3300010048\|Ga0126373_12045952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	635	Open in IMG/M
3300010097\|Ga0127501_1101430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	671	Open in IMG/M
3300010154\|Ga0127503_10318097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1457	Open in IMG/M
3300010166\|Ga0126306_11761185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	518	Open in IMG/M
3300010359\|Ga0126376_10028728	All Organisms → cellular organisms → Bacteria	3731	Open in IMG/M
3300010361\|Ga0126378_10099892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2861	Open in IMG/M
3300010361\|Ga0126378_11724675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	712	Open in IMG/M
3300010361\|Ga0126378_12475027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	593	Open in IMG/M
3300010362\|Ga0126377_10067879	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300010366\|Ga0126379_10807071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1038	Open in IMG/M
3300010366\|Ga0126379_11164102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	877	Open in IMG/M
3300010366\|Ga0126379_13306744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	540	Open in IMG/M
3300010373\|Ga0134128_11297364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	803	Open in IMG/M
3300010376\|Ga0126381_100252692	Not Available	2390	Open in IMG/M
3300011270\|Ga0137391_10435594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	1117	Open in IMG/M
3300012189\|Ga0137388_11658919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	574	Open in IMG/M
3300012198\|Ga0137364_11358641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	527	Open in IMG/M
3300012206\|Ga0137380_10090015	All Organisms → cellular organisms → Bacteria	2804	Open in IMG/M
3300012207\|Ga0137381_11166065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	662	Open in IMG/M
3300012209\|Ga0137379_10151636	Not Available	2227	Open in IMG/M
3300012212\|Ga0150985_104809788	All Organisms → cellular organisms → Bacteria	3575	Open in IMG/M
3300012212\|Ga0150985_107935188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	526	Open in IMG/M
3300012212\|Ga0150985_109670339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1703	Open in IMG/M
3300012212\|Ga0150985_112115377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	898	Open in IMG/M
3300012212\|Ga0150985_113161264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1178	Open in IMG/M
3300012212\|Ga0150985_122193110	All Organisms → cellular organisms → Bacteria	2717	Open in IMG/M
3300012285\|Ga0137370_10443351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	790	Open in IMG/M
3300012371\|Ga0134022_1201990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300012396\|Ga0134057_1054550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505	Open in IMG/M
3300012404\|Ga0134024_1112357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300012405\|Ga0134041_1366785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	953	Open in IMG/M
3300012469\|Ga0150984_106889617	All Organisms → cellular organisms → Bacteria	2225	Open in IMG/M
3300012469\|Ga0150984_117268672	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300013308\|Ga0157375_11132719	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300015371\|Ga0132258_10283679	All Organisms → cellular organisms → Bacteria	4065	Open in IMG/M
3300015371\|Ga0132258_10538803	All Organisms → cellular organisms → Bacteria	2924	Open in IMG/M
3300015371\|Ga0132258_11569272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1662	Open in IMG/M
3300015371\|Ga0132258_11831361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1529	Open in IMG/M
3300015371\|Ga0132258_12998609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1170	Open in IMG/M
3300015374\|Ga0132255_101693693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	959	Open in IMG/M
3300015374\|Ga0132255_104849687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300015374\|Ga0132255_106098511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	510	Open in IMG/M
3300016294\|Ga0182041_10640711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	937	Open in IMG/M
3300018468\|Ga0066662_10219120	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300018482\|Ga0066669_10387763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	1177	Open in IMG/M
3300018482\|Ga0066669_12189556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300020070\|Ga0206356_11523991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	569	Open in IMG/M
3300021362\|Ga0213882_10008751	All Organisms → cellular organisms → Bacteria	3619	Open in IMG/M
3300021362\|Ga0213882_10230954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	765	Open in IMG/M
3300021384\|Ga0213876_10010377	All Organisms → cellular organisms → Bacteria	5000	Open in IMG/M
3300021384\|Ga0213876_10197409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1070	Open in IMG/M
3300021560\|Ga0126371_10325386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1668	Open in IMG/M
3300021953\|Ga0213880_10158510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300025922\|Ga0207646_11215567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	660	Open in IMG/M
3300025936\|Ga0207670_11773529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	525	Open in IMG/M
3300025944\|Ga0207661_11200537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	698	Open in IMG/M
3300026326\|Ga0209801_1085007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1383	Open in IMG/M
3300028536\|Ga0137415_11239955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	562	Open in IMG/M
3300031474\|Ga0170818_110606322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	600	Open in IMG/M
3300031573\|Ga0310915_10346991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1052	Open in IMG/M
3300031779\|Ga0318566_10490618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	602	Open in IMG/M
3300031890\|Ga0306925_11611658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	630	Open in IMG/M
3300031897\|Ga0318520_10357298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	887	Open in IMG/M
3300032059\|Ga0318533_10632757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	785	Open in IMG/M
3300032180\|Ga0307471_103323443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300032261\|Ga0306920_103606668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300034268\|Ga0372943_0397326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	889	Open in IMG/M
3300034384\|Ga0372946_0029157	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2444	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.46%
Host-Associated	Host-Associated	20.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.57%
Plants	Host-Associated → Plants	19.64%
Aquatic	Environmental → Aquatic	0.89%
Human	Host-Associated → Human	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.36%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	2.68%
Roots	Host-Associated → Plants → Roots	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Digestive System	Host-Associated → Human → Digestive System	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	11.61%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.79%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	20.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.46%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.14%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	5.36%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.46%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.68%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	2.68%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.79%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.79%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010097	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012404	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1264042781	3300000956	Soil	MVQITERATVELRRLLADNSARPQQGVRLRLNQVGELAMTIDVPHSGDSIIRRDNLPVLIVDGRLSARLAQRVLDFPSASPGGFTLGWRAPLPNSTPDEAG*
Ga0058863_116399571	3300004799	Host-Associated	MVQVTERATAELRRLLSNNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSVIRRDNVPVLIVDGRLGTRLAQRVLDFPSASGGGFTLRWRTPSANPTPDQTG*
Ga0066672_100339312	3300005167	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWRSLTPYPTAEGAG*
Ga0066672_103249311	3300005167	Soil	MVQITERASTELRRLLTDHFARPQQGVRLRLNDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLAARLAQRVLDYPAESGTGGGFSLRWRTSEQPQQ*
Ga0066683_105375492	3300005172	Soil	VVQITERARVELRRLLTEHFARPQQGVRLRLSAEGDLMMTIDVPHPGDSVIRRDNAPVLIVDSRLSSRLAQRVLDFPPTTPEKRGGFTLAHSTALLPPLSDSPA*
Ga0066680_102109273	3300005174	Soil	MVQLTERASTELRRLLTEHFARPQQGVRLRLNEVGGLRMTIDIPHAGDSVIRRDNVPVLIVDGRLSSTLAQRVLDFGGGVENGHGFTLGWRTASPPTTAEK*
Ga0066679_102509442	3300005176	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWRSLTPYPTAE
Ga0066690_103139581	3300005177	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWR
Ga0066688_103390761	3300005178	Soil	RLLTDHFARPQQGVRLRLNDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLAARLAQRVLDYPAESGTGGGFSLRWRTSEQPQQ*
Ga0066675_114564142	3300005187	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWRSLTPY
Ga0070676_112513782	3300005328	Miscanthus Rhizosphere	LMVQITERATVELRRLLTDNFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLTTRLAQRVLDFPPGSGAGFTLRWRAPLPGSTQDDRG*
Ga0070713_1001718113	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GLRLRPSRRIADGNRELMVQVTERATAELRRLLTSNFARPQQGVRLLLREGGDLAMTIDIPHSGDSVIRRDNVPVLIVDGRLGTRLAQRVLDFPSASGGGFTLRWRTEAPTATPHETG*
Ga0070710_110032521	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MVQITERASAELRRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPASSGAGFTLRWR
Ga0070711_1007475942	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVQITERASAELRRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPASSGAGFTLRWRAPLTSSAADEAR*
Ga0066681_101516082	3300005451	Soil	MVQITERAGTELRRLLAEHFARPQQGVRLRLNQSGDLRMTIDVPHAGDSVIRRDNVPVLIVDGRLAVSLAQRVLDFPGPLETARGFTLGWRTQTEK*
Ga0070707_1005778612	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVQLTERASTELRRLLDDHFARPHQGVRLRLTDAGALAMTIDVPHSGDSIVRRDNLPVLIVDGRLAVRLAQRVLDFQSGTGVGTGFKLGWRTAPPASAGPAESR*
Ga0070735_108960661	3300005534	Surface Soil	RLMVQITERAGVELRRLLTDNFARPQQGVRLRLNAAGDLAMTIDVPHAGDSIIRRDNLPVLIIDGRLSTQLALRVLDFPSASGGGFTLRWRASETDKPG*
Ga0070730_100295105	3300005537	Surface Soil	MVQITERASTELRRLLTDNFARPQQGVRLRLNQVGHLSMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLALRVLDFPAASGGGFTLRWRDSSTYPTHPNGGN*
Ga0070730_109069782	3300005537	Surface Soil	MVQITEKASAELRRLLTNNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLTVRLAQRVLDFPSASGGGFTLRWRTPVPNPTPDQTG*
Ga0070732_100698294	3300005542	Surface Soil	MVQITERASTELRRLLTDNFARPQQGVRLRLKETGDLAMTIDVPHAGDSVIRRDNLPVLIVDGRLAVRLAQRVLDFPARSGAGFTLRWRASLAIATPDETG*
Ga0066701_103167822	3300005552	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWRSLTPYPTAEGVG*
Ga0066695_104789193	3300005553	Soil	LMVQITERASTELRRLLTDHFARPQQGVRLRLNEAGSLAMTIDVPHAGDSIIRRDNLPVLIVDARLAARLAERILDFPAGSGGGGGFTLRWRTPPSPRSA*
Ga0066692_108035951	3300005555	Soil	MVQITERASTELRRLLTDHFARPQQGVRLRLSDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLAARLAQRVLDYPAESGTGGGFSLRWRTSEQPQQ*
Ga0066704_105394841	3300005557	Soil	GQPLMVQITERASTELRRLLTDHFARPQQGVRLRLNDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLAARLAQRVLDYPAESGTGGGFSLRWRTSAQPQQ*
Ga0066700_100697074	3300005559	Soil	RRLLTDHFARPQQGVRLRLNDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLATRLAQRVLDYPTEQGSAGGFSLRWRTSAQPEQ*
Ga0066700_103943242	3300005559	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWRSLTPYPTAEEAG*
Ga0066708_105102862	3300005576	Soil	MVQLTERASTELRRLLTEHFARPQQGVRLRLNEVGGLRMTIDIPHAGDSVIRRDNVPVLIVDGRLSSTLAQRVLDFAGGRDAGRGFTLGWRTASPPTRVEQEVR
Ga0066903_1000170643	3300005764	Tropical Forest Soil	MVQLTERASTELRRLLTEHFARPQQGVRLRLNEAGGLRMTIDIPHAGDSVIRRDNVPVLIVDGRLSSTLAQRVLDFAGGRDAGHGFTLGWRTASPPTTAEK*
Ga0066903_1011601013	3300005764	Tropical Forest Soil	MVHLTERASAELRRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLSTRLAHRVLDFPSASGAGFTLRWRVLEPTATPEEQAD*
Ga0066903_1012441262	3300005764	Tropical Forest Soil	MVQLTERASAELRRLLIDHFARPQQGVRLRLNEVGDLAMTIDVPHSGDSVIRRDNLPVLIVDGRLALRLAHRVLDFPATPGGGGGFSLRWRDQTQASPEDLG*
Ga0066903_1018400482	3300005764	Tropical Forest Soil	MVHITERASAELQRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHPGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSTSGGGFTLGWRAAVPNSTPDEPA*
Ga0066903_1039861472	3300005764	Tropical Forest Soil	MVQITERASAELRRLLTDNFARPQQGVRLRLNQAGGMAMTIDVPHSGDSIIRRDNLPVLIVDGRLTMRLAQRVLDYPAASGSGFTLRWRASSRPDELG*
Ga0070717_120796172	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	PMVQITERATAELRRLLTNNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNVPVLIVDGRLGMRLAQRVLDFPSAAGGGFTLRWRTPNAMADETSWS*
Ga0066659_116465322	3300006797	Soil	MVQITERASTELRRLLTDHFARPQQGVRLRLNDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLAARLAQRVLDYPAESGTGGGFSLRWRT
Ga0075436_1004685882	3300006914	Populus Rhizosphere	MVQITERAGTELRRLLTNHFARPQQGVRLRLSQAGGLAMTIDVPHAGDSIIRRDNLPVLIVDARLATRLAERILDFPAGADSGGGFTLRWRTPLPPASQP*
Ga0079219_111881902	3300006954	Agricultural Soil	MVQITERASTELRRLLTDNFARPQQGVRLRLNEAGSLAMTIDVPHSGDSVIRRDNLPVLIVDVRLAARLAERVLDFPAGSGGGGGFALRWRTPPSPRSA*
Ga0066710_1010011923	3300009012	Grasslands Soil	VVQITERARVELRRLLTEHFARPQQGVRLRLSAEGDLMMTIDVPHPGDSVIRRDNAPVLIVDSRLSSRLAQRVLDFPPTTPEKRGGFTLAHSTALLPPLSDSPA
Ga0105249_119601841	3300009553	Switchgrass Rhizosphere	MVQITERASVELRRLLTDNFARPQQGVRLRLNTEGHLAMTIDVPHSGDSIIRRDNLPVLIVDGQLSTRLAQRVLDFPRSQSGAHGGFTLRWRTPLPSTAADVPC*
Ga0126304_100800503	3300010037	Serpentine Soil	MVQITERAGTELRRLLAEHLARPQQGIRLRLNQEGGLAMAIDVPHNGDSVIRRDNAPVLIVDGRLAATLAQRVLDFPDQLVARRGFTLGWRTSPDT*
Ga0126315_100656152	3300010038	Serpentine Soil	MVQITERASAELRRLLSEHVARPQQGVRLRLNEVGDLRMTIDVPHAGDSIIRRDNVAVLIVDARLATRLAMRVLDFPAGPGGGGGFSLGWRPAEARSGSADGP*
Ga0126315_101284422	3300010038	Serpentine Soil	VQITERAGAELRRLLAENLARPQQGVRLRLNKDGGLTMAIDFPHAGDSVIRRDNVPVLIIDARLSAPLARRVLDFPTQSQITRGFTLAWRRSAPDDG*
Ga0126312_113522011	3300010041	Serpentine Soil	QLTERASAELRRILTDHFARPQQGVRLRLNDAGGLRMTIDVPHSGDSIIRRDNLPVLIVDGRLASRLAMRVLDFPGQSGGSGGFTLGWRAAADRTLEDRQG*
Ga0126384_107211881	3300010046	Tropical Forest Soil	ITERASAELQRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHPGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSTSGGGFTLGWRAAVPNSTPDEPA*
Ga0126382_101386882	3300010047	Tropical Forest Soil	MPSGSQHLMVQITERASAELRRLLTDNCARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSASGGGFTLGWRAQLQNSRPEETG*
Ga0126373_120459522	3300010048	Tropical Forest Soil	VVQITERASAELRRLLSDNFARPQQGVRLRLNQTGDLAMTIDIPHSGDSIIRRDNLPVLIIDGRLATRLAQRVLDFPSPAGGGFTLRWRDPSPNSVTDETG*
Ga0127501_11014302	3300010097	Grasslands Soil	MVQLTERASTELRRLLTEHFARPQQGVRLRLNEVGGLRMTIDIPHAGDSVIRRDNVPVLIVDGRLSSTLAQRVLDFAGGRDAGRGFTLGWRTAS
Ga0127503_103180974	3300010154	Soil	EPSESRPLMVHVTERASTELRRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSVIRRDNLPVLIVDGRLSARLAQRVLDFPSPSGGGFTLAWRVVPVRTSAPDETG*
Ga0126306_117611852	3300010166	Serpentine Soil	MVQIAERAGAELRRLLADNLARPQQGVRLRLNKDGGLTMAIDFPHAGDSVIRRDNVPVLIIDARLSAPLARRVLDFPAQSHITRGFTLGWRRSPSDDE*
Ga0126376_100287284	3300010359	Tropical Forest Soil	MPSGGQHLMVQITERASAELRRLLTDNCARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSASGGGFRLGWRAPLQNSRPEETG*
Ga0126378_100998922	3300010361	Tropical Forest Soil	MVHITERASAELQRLLTDNFARPQQGVRLRLNQAGDLAMTIDVPHPGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPSTSGGGFTLGWRAAVPNSTPDEPA*
Ga0126378_117246752	3300010361	Tropical Forest Soil	MVHITERASAELRRLLTDNFARPQQGVRLRLNQTGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLSTRLAQRVLNFPAASRAGFTLRWRVLEPTATPEEPG*
Ga0126378_124750271	3300010361	Tropical Forest Soil	MVQITERASAELRRLLTDNFARPQQGVRLGLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSSSGGGFTL
Ga0126377_100678792	3300010362	Tropical Forest Soil	MVQLTERASAELRRLLIDHFARPQQGVRLRLNEVGDLAMTIDVPHSGDSVIRRDNLPVLIVDGRLAQRLAHRVLDFPATPGGGGGFSLRWRDQTQASPEDLG*
Ga0126379_108070711	3300010366	Tropical Forest Soil	GRECMVQLTERASAELRRLLIDHFARPQQGVRLRLNEVGDLAMTIDVPHSGDSVIRRDNLPVLIVDGRLAQRLAHRVLDFPATPGGGGGFSLRWRDQTQASPEDLG*
Ga0126379_111641021	3300010366	Tropical Forest Soil	MVQITERASAELRRLLIDHFARPHQGVRLRLDDAGDLAMTIDVPHSGDSVIRRDHVPVLIIDGRLAQRLAQRVLDFSALPGASGGFKLGWRGQTRAASEEPG*
Ga0126379_133067441	3300010366	Tropical Forest Soil	MVHITERASAELRRLLTDNFARPQQGVRLRLNQTGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPSASGAGFTLRWRVLEPTATPEGQAD*
Ga0134128_112973641	3300010373	Terrestrial Soil	TAELRRLLANNFARPHQGVRLRLTQTGDLGMTIDVPHSGDSIIRRDNLPVLIVDGRLGTRLAQRVLDFPSASGGGFTLRWRTPSANPTPDQTG*
Ga0126381_1002526924	3300010376	Tropical Forest Soil	MVHITERASAELQRLLTDNFARPQQDVRLGLNHAADLAITIDVPHPGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSTSGGGFTLGWRAAVPNSTPDEPA*
Ga0137391_104355942	3300011270	Vadose Zone Soil	MVQMTERASTELRRLLTEHFARPQQGVRLRLDQAGALKMTIDVPHAGDSVFRRDNVPVLIVDGRLSSSLAQRVLDFPGDRGTGHGFTLGWRAAEKEV*
Ga0137388_116589191	3300012189	Vadose Zone Soil	VPIDPVAIGTAGEGATKNETSSMVQMTERASTELRRLLTEHFARPQQGVRLRLDQAGALKMTIDVPHAGDSVFRRDNVPVLIVDGRLSSSLAQRVLDFPGDRGTGHGFTLGWRAAEKEV*
Ga0137364_113586411	3300012198	Vadose Zone Soil	MVQITERAGTELRRLLAEHFARPQQGVRLRLNQSGDLRMTIDVPHAGDSVIRRDNVPVLIVDGRLAVSLAQRVLDFPGPIDTSRGFTLGWRTQTEK*
Ga0137380_100900152	3300012206	Vadose Zone Soil	MVQLTERAGTELRRLLVEHFARPQQGVRLRLGDAGQLAMTIDVPHAGDSVIRRDNVPVLIVDARLSTRLAARVLDFPPPSEAKKGFILTWSQSPPNGEPA*
Ga0137381_111660652	3300012207	Vadose Zone Soil	ELRRLLVEHFARPQQGVRLRLGDAGQLAMTIDVPHAGDSVIRRDNVPVLIVDARLSTRLAARVLDFPPPSEAKKGFILTWSQSPPNGDPA*
Ga0137379_101516362	3300012209	Vadose Zone Soil	MVQLTERAGTELRRLLVEHFARPQQGVRLRLGDAGQLAMTIDVPHAGDSVIRRDNVPVLIVDARLSTRLAARVLDFPPPSEAKKGFILTWSQSPPNGDPA*
Ga0150985_1048097882	3300012212	Avena Fatua Rhizosphere	MVQITDRASTELRRLLTDNFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRDNFPVLIVDGRLSMRLAQRVLDFASPSGAGFSLGWRPAGQAAPKAEAR*
Ga0150985_1079351881	3300012212	Avena Fatua Rhizosphere	MVQITERASAELRRLLTNNFARPQQGVRLRLNEAGGLAMTIDVPHSGDSVIRRDHAPILIVDGRLATRLARRVLDYPSASGSGFTLGWRPSLANSAPSETG*
Ga0150985_1096703393	3300012212	Avena Fatua Rhizosphere	MVQLTERASVELRRLLTDNGARPHQGVRLRLNEVGDLKMTIDVPHPGDSILRRDNLPVLIVDGRLAIRLAQRVLDFSAPPAARPGFSLRWREPLAASVAE*
Ga0150985_1121153771	3300012212	Avena Fatua Rhizosphere	MVQLTERASAELRRLLNDHGARPHQGVRLRLNDAGDLKMTIDVPHAGDSILRRDNVPVLIVDGRLATRLAQRVLDFSSPPAARSGFSLGWRESPPSQSASAVN*
Ga0150985_1131612641	3300012212	Avena Fatua Rhizosphere	TERAGTELRRLLTENIVRPQQGIRLRLNTAGDLAMTIDVPHSGDSIIRRDNVPVLIIDGRLALRLAQRVLDSPPRPGAGGGFTLRWRTASPATTGDEVG*
Ga0150985_1221931101	3300012212	Avena Fatua Rhizosphere	TPLMVQVTEQATTELRRLLADNFARPQQGVRLRLNQVGDLAMTIDVPHSGDSIIRRDNLPILIVDGRLATRLAQRVLDFPAPSGSGFTLRWRAALANSTAEPG*
Ga0137370_104433511	3300012285	Vadose Zone Soil	MVQITERAGTELRRLLAEHFARPQQGVRLRLNQSGDLRMTIDVPHAGDSVIRRDNVPVLIVDGRLAVSLAQRVLDFPGPIDTGRGFTLGWRTETEK*
Ga0134022_12019902	3300012371	Grasslands Soil	MVQMTERASTELRRLLTEHFAKPQQGVRLRLDQGGELRMTIDVPHAGDSVIRRDNVPVLIVDGRLSSSLAQRVLDFPGDRDNGHGFTLGWRAASPSTTTEKEV*
Ga0134057_10545501	3300012396	Grasslands Soil	MVQLTERASTELRRLLTEHFARPQQGVRLRLNEVGGLRMTIDIPHAGDSVIRRDNVPVLIVDGRLSSTLAQRVLDFAGGRDAGHGFKLGWRTTSP
Ga0134024_11123572	3300012404	Grasslands Soil	MVQITERAGTELRRLLAEHFARPQQGVRLRLNQSGDLRMTIDVPHAGDSVIRRDNVPVLIVDGRLAVSLAQRVLDFPGPIDTGRGFTLGWRTETEK
Ga0134041_13667853	3300012405	Grasslands Soil	MVQVTERASTELRRLLTEHFARPQQGVRLRMNEAGGLRMTIDVAHAGDSVIRRDNMPVLIVDGRLATTLAQRVLDFAGDRDPGRGFTLGWRIAHPLTSPQEAKE
Ga0150984_1068896171	3300012469	Avena Fatua Rhizosphere	MVQLTDRASAELRRLLVSHLARPQQGVRLRLNEVGGLAMTIDVPHSGDSVIRRDNVPVLIVEGRLAFRLSQRVLDFPPTTPSAAGGFTLGWRSPPSGPSDRIG*
Ga0150984_1172686722	3300012469	Avena Fatua Rhizosphere	MVQITERASTELRRLLTDHFARPQQGVRLRLNDAGGLAMTIDVPHAGDSIIRRDNVPVLIVDARLATRLAPRVLDFPSGAGAAGFTLGWRAPLSQPSRDQPS*
Ga0157375_111327192	3300013308	Miscanthus Rhizosphere	MVQITEPAHTELRRLLAENSARPQQGIRLRLDDGGALKMTIDVPHAGDSVIRRDNVPVLIVDARLAPSLVPRVLDFQNSVEGKTRRGFTLGWRAASEH*
Ga0132258_102836793	3300015371	Arabidopsis Rhizosphere	MVQLTERASAELQRLLVDHVARPQQAIRLRLNEVGDLRMTIDVPHPGDSVIRQDFVPVLIIDARLAVRLSMRVLDFSSGTGGGFKLGWRSATPSTP*
Ga0132258_105388032	3300015371	Arabidopsis Rhizosphere	MVQITERATVELRRLLTDNFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLTTRLAQRVLDFPPGSGAGFTLRWRAPLPGSTQDDRG*
Ga0132258_115692722	3300015371	Arabidopsis Rhizosphere	MVQLTESASAELRRLLTNHMARPTQGVRLRLNEVGGLAMTIDVPHSGDSIIRRDNMPVLIVDGRLSTRLSQRILDYSDASGAVGGFKLRWQTLQPPESEP*
Ga0132258_118313613	3300015371	Arabidopsis Rhizosphere	MVQITERASTELRRLLTDHFARPQQGVRLRLNEAGSLAMTIDVPHSGDSIIRRDNLPVLIVDARLGARLSERVLDFPAGSGGGSGFTLRWRTPPSTPTPST*
Ga0132258_129986092	3300015371	Arabidopsis Rhizosphere	RAGTRHARDRTHKQSHKLMVQITERATAELRRLLSNNLAQPRQGVRLRLNEVGGLTMTIDVPHSGDSVIRRDNQPVLIVEARLSSRLAQRVLDFPPPSKTRSGFTLGWREAVPNSIADATG*
Ga0132255_1016936932	3300015374	Arabidopsis Rhizosphere	MVQITERATVELRRLLTDNFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLTTRLAQRVLDIPPGSGAGFTLRWRAPLPGSTQDDRG*
Ga0132255_1048496871	3300015374	Arabidopsis Rhizosphere	MVQITERASTELRRLLTDHFARPQQGVRLLLNEAGSLAMTIDVPHSGDSIIRRDNLPVLIVEARLGARLSERVLDFPAGPGGGGGFALRWRTPPSTPTPST*
Ga0132255_1060985111	3300015374	Arabidopsis Rhizosphere	MVQLTERASAELQRLLVDHVARPQQAIRLRLNEVGDLRMTIDVPHPGDSVIRQDFVPVLIIDARLAVRLSMRVLDFSSGTGGGFKLGWRSATPS
Ga0182041_106407111	3300016294	Soil	MVQITERASAELRRLLTDNFARTQQGVRLRLNEAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLARRVLDFPAATRGGFTLRWRVLSP
Ga0066662_102191202	3300018468	Grasslands Soil	MVQITERASTELRRLLTDHFARPQQGVRLRLNDAGDLAMTIDVPHAGDSIIRRDNLPVLIVDGRLAARLAQRVLDYPAESGTGGGFSLRWRTSEQPQQ
Ga0066669_103877632	3300018482	Grasslands Soil	MVQITERAGTELRRLLAEHFARPQQGVRLRLNQSGDLRMTIDVPHAGDSVIRRDNVPVLIVDGRLAVSLAQRVLDFPGPLETARGFTLGWRTQTEK
Ga0066669_121895562	3300018482	Grasslands Soil	RSLLSDLARRAMVQITERAGAELRRLLVEHLARPHQGVRLRLDPAGSLRFTIDAPHPGDSIIRRDNIPVLIIDARLAIKLAQRVLDFPQSEAKHGFTLGWRPPITPSN
Ga0206356_115239911	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MVLITERASAELRRLLTNNFARPQQGVRLRLSPAGDLAMTIDVPHSGDSIIRRDYRPVLIVDSRLAPRLAPRVLDFSIASGRGFTLGWRNSLSDSTADDPG
Ga0213882_100087514	3300021362	Exposed Rock	MVQITERATAELQRLLSDNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLTTRLAQRVLDFPSTSGGGFTLRWRASSPNSTRDDPK
Ga0213882_102309542	3300021362	Exposed Rock	MVQITERAGVELRRLLTDNFAQPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRDNQPVLIVDGRLSARLAQRVLDFPARSGGGFTLGWRASAPATVSDGSA
Ga0213876_100103773	3300021384	Plant Roots	MVQLTERASAELRRLLAEHVARPQQGVRLHLNRAGDLGMAIDVPHAGDSIIRRDNLPVLIVDGRLATRLAMRVLDFPSGVGGAGGFTLGWRSSGAVGTAEDGHAG
Ga0213876_101974092	3300021384	Plant Roots	MVQITERASAELRRLLTDNFARPQQGVRLRLNAAGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLVTRLAQRVLDFPAATRGGFTLAWRVLSPNSTPDEPGGA
Ga0126371_103253862	3300021560	Tropical Forest Soil	MVHITERASAELQRLLTDNLARPQQGVRLRLNQAGDLAMTIDVPHPGDSIIRRDNLPVLIVDGRLAARLAQRVLDFPSTSGGGFTLGWRAAVPNSTPDEPA
Ga0213880_101585101	3300021953	Exposed Rock	MVQITERASVELRRLLTDNLARPQQGVRLRLNEHGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPASTRGGFTLAWRVLSPNSTPDEPGGP
Ga0207646_112155671	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVQLTERASTELRRLLDDHFARPHQGVRLRLTDAGALAMTIDVPHSGDSIVRRDNLPVLIVDGRLAVRLAQRVLDFQSGTGVGTGFKLGWRTAPPASAGPAESR
Ga0207670_117735291	3300025936	Switchgrass Rhizosphere	MVQLTERASAELQRLLVDHVARPQQAIRLRLNEVGDLRMTIDVPHPGDSVIRQDFVPVLIIDARLAVRLSMRVLDFSSGTGG
Ga0207661_112005372	3300025944	Corn Rhizosphere	MVQVTERATAELRRLLSNNFARPQQGVRLRLNQAGDLAMTIDVPHSGDSVIRRDNVPVLIVDGRLGTRLAQRVLDFPSASGGGFTLRWRTPSANPTPDQTG
Ga0209801_10850072	3300026326	Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFTLGWRSLTPYPTAEGAG
Ga0137415_112399551	3300028536	Vadose Zone Soil	MVQLTERASTELRRLLTDHFARPQQGVRLRLNQAGGLAMTIDVPHSGDSIIRRNNMPVLIVDGRLAARLAQRVLDFPATSGAHSSGFKLGWR
Ga0170818_1106063221	3300031474	Forest Soil	MVQVTERATVELRRLLADNFARPQQGVRLRLNQLGDLAMTIDVPHSGDSIIRRDNLPVLIVDGRLAIRLAQRVLDFPAASGNGFTLRWRASLANSTAESG
Ga0310915_103469912	3300031573	Soil	MVQITERASAELRRLLTDNFARTQQGVRLRLNEAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPAATRGGFTLRWRVLSPDEPGGP
Ga0318566_104906181	3300031779	Soil	STRRHAATLSAPPPRGLRSRRTRPKLEPREPLMVQITERASAELRRLLTDNFARTQQGVRLRLNEAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPAATRGGFTLRWRVLSPDEPGGP
Ga0306925_116116582	3300031890	Soil	MVQITERASAELRRLLTDNFARPQQGVRLRLNQTGDLAMTIDIPHAGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPSASGAGFTLRWRAALANSTLDEPG
Ga0318520_103572981	3300031897	Soil	RRTRPKLEPREPLMVQITERASAELRRLLTDNFARTQQGVRLRLNEAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPAATRGGFTLRWRVLSPDEPGGP
Ga0318533_106327571	3300032059	Soil	EPREPLMVQITERASAELRRLLTDNFARTQQGVRLRLNEAGGLAMTIDVPHSGDSIIRRDNLPVLIVDGRLATRLAQRVLDFPAATRGGFTLRWRVLSPDEPGGP
Ga0307471_1033234431	3300032180	Hardwood Forest Soil	VQITERASVELRRLLTDNFARPQQGVRVRLNTEGHLAMTIDVPHSGDSIIRRDNLPVLMVDGQLSTRLAQRVLDFPRSQSGAHGGFTLRWRTPLPSTAADVPC
Ga0306920_1036066681	3300032261	Soil	MVQITERANVELRRLLTDNFARPQQGVRLRLNQAGDLAMTIDIPHVGDSIIRRDNLPVLIIDGQLAQRLAQRVLDFPSASGAGFTLRWRAPLASPVPDELG
Ga0372943_0397326_89_385	3300034268	Soil	MVQITERAGTELQRLLSEHFARPHQGVRLRLNQGGDLGMTIDVPHAGDSVIRRDHAPLLIVDGRLSASLSQRVLDFPLHAATRGGFTLGWRTASDRRP
Ga0372946_0029157_1457_1768	3300034384	Soil	MVQITERASTELRRLLTENFARPQQGVRLRLSPTGDLALTIDVPHSGDSIIRRDHLPVLIVDGRLSHTLSQRVLDFPLASVARQSFTLGWRAGSTSAASLEQV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083958

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences