Metagenome / Metatranscriptome Family F084057

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084057
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	77 residues
Representative Sequence	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT
Number of Associated Samples	85
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.06 %
% of genes near scaffold ends (potentially truncated)	50.89 %
% of genes from short scaffolds (< 2000 bps)	77.68 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.750 % of family members)
Environment Ontology (ENVO)	Unclassified (39.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.929 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 33.75% β-sheet: 5.00% Coil/Unstructured: 61.25%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF07045	DUF1330	23.21
PF09996	DUF2237	20.54
PF13847	Methyltransf_31	5.36
PF04392	ABC_sub_bind	2.68
PF00884	Sulfatase	2.68
PF13649	Methyltransf_25	1.79
PF03401	TctC	0.89
PF13432	TPR_16	0.89
PF03466	LysR_substrate	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	23.21
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.68
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.11 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.11 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.11 %
Unclassified	root	N/A	25.89 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.18 %
Unclassified	root	N/A	25.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	57.14 %
Unclassified	root	N/A	25.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	21.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.36 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	21.43 %
Lactobacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	0.89 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	21.43 %
Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	0.89 %
Lactobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	21.43 %
Schleiferilactobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Schleiferilactobacillus	0.89 %
Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	21.43 %
Schleiferilactobacillus harbinensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Schleiferilactobacillus → Schleiferilactobacillus harbinensis	0.89 %
Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZ032L002H6FUW	Not Available	501	Open in IMG/M
2170459005\|F1BAP7Q02FY9NX	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101485800	Not Available	537	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1036237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	768	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10021792	Not Available	1755	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1046854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1039564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	739	Open in IMG/M
3300001867\|JGI12627J18819_10010711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3608	Open in IMG/M
3300001867\|JGI12627J18819_10140550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	986	Open in IMG/M
3300002562\|JGI25382J37095_10219974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Schleiferilactobacillus → Schleiferilactobacillus harbinensis	573	Open in IMG/M
3300002910\|JGI25615J43890_1010030	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300002914\|JGI25617J43924_10015750	All Organisms → cellular organisms → Bacteria	2555	Open in IMG/M
3300002917\|JGI25616J43925_10100099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300004463\|Ga0063356_102812053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300004633\|Ga0066395_10060877	All Organisms → cellular organisms → Bacteria → Proteobacteria	1706	Open in IMG/M
3300005165\|Ga0066869_10010810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1243	Open in IMG/M
3300005166\|Ga0066674_10540989	Not Available	519	Open in IMG/M
3300005186\|Ga0066676_10320105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1031	Open in IMG/M
3300005332\|Ga0066388_100882558	Not Available	1475	Open in IMG/M
3300005332\|Ga0066388_100980120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1412	Open in IMG/M
3300005332\|Ga0066388_101348437	Not Available	1234	Open in IMG/M
3300005332\|Ga0066388_101573774	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_47_16	1155	Open in IMG/M
3300005332\|Ga0066388_103594279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300005332\|Ga0066388_108638433	Not Available	506	Open in IMG/M
3300005363\|Ga0008090_10066499	Not Available	1431	Open in IMG/M
3300005363\|Ga0008090_10183212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300005406\|Ga0070703_10314284	Not Available	657	Open in IMG/M
3300005447\|Ga0066689_10153559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1371	Open in IMG/M
3300005468\|Ga0070707_101254392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300005518\|Ga0070699_100001833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19281	Open in IMG/M
3300005518\|Ga0070699_100111479	Not Available	2402	Open in IMG/M
3300005557\|Ga0066704_10153770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1544	Open in IMG/M
3300005713\|Ga0066905_100377180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1142	Open in IMG/M
3300005713\|Ga0066905_101168950	Not Available	686	Open in IMG/M
3300005764\|Ga0066903_101083276	All Organisms → cellular organisms → Bacteria → Proteobacteria	1475	Open in IMG/M
3300005764\|Ga0066903_101845096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1156	Open in IMG/M
3300005764\|Ga0066903_102041105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1102	Open in IMG/M
3300005764\|Ga0066903_103836826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	807	Open in IMG/M
3300005764\|Ga0066903_106016713	Not Available	635	Open in IMG/M
3300005764\|Ga0066903_107028346	Not Available	584	Open in IMG/M
3300006755\|Ga0079222_12127474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300006844\|Ga0075428_101577107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300006852\|Ga0075433_10886063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300007076\|Ga0075435_101872373	Not Available	527	Open in IMG/M
3300009089\|Ga0099828_10047392	All Organisms → cellular organisms → Bacteria	3552	Open in IMG/M
3300009090\|Ga0099827_10024141	All Organisms → cellular organisms → Bacteria → Proteobacteria	4276	Open in IMG/M
3300009792\|Ga0126374_10797374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300010043\|Ga0126380_10298524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1145	Open in IMG/M
3300010046\|Ga0126384_10054019	All Organisms → cellular organisms → Bacteria	2785	Open in IMG/M
3300010046\|Ga0126384_10073096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2443	Open in IMG/M
3300010046\|Ga0126384_10113154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2027	Open in IMG/M
3300010046\|Ga0126384_10921969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300010047\|Ga0126382_10272136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1254	Open in IMG/M
3300010159\|Ga0099796_10293617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300010358\|Ga0126370_11483680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	644	Open in IMG/M
3300010361\|Ga0126378_11165214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300010376\|Ga0126381_102329830	Not Available	769	Open in IMG/M
3300010376\|Ga0126381_104519688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	537	Open in IMG/M
3300010398\|Ga0126383_10020183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5086	Open in IMG/M
3300010398\|Ga0126383_12296984	Not Available	625	Open in IMG/M
3300010398\|Ga0126383_12978082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300010868\|Ga0124844_1098759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1107	Open in IMG/M
3300012199\|Ga0137383_10565415	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300012201\|Ga0137365_10008917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7968	Open in IMG/M
3300012202\|Ga0137363_11376636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300012205\|Ga0137362_10063599	All Organisms → cellular organisms → Bacteria	3039	Open in IMG/M
3300012350\|Ga0137372_10365290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1101	Open in IMG/M
3300012355\|Ga0137369_10531518	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300012358\|Ga0137368_10030741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4866	Open in IMG/M
3300012359\|Ga0137385_11268388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	599	Open in IMG/M
3300012360\|Ga0137375_10097586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3004	Open in IMG/M
3300012361\|Ga0137360_10132653	All Organisms → cellular organisms → Bacteria → Proteobacteria	1952	Open in IMG/M
3300012362\|Ga0137361_11317204	Not Available	646	Open in IMG/M
3300012924\|Ga0137413_11234964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300012971\|Ga0126369_10653982	Not Available	1125	Open in IMG/M
3300012971\|Ga0126369_12609626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300012989\|Ga0164305_12263005	Not Available	500	Open in IMG/M
3300015359\|Ga0134085_10372079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300015374\|Ga0132255_103512246	Not Available	667	Open in IMG/M
3300016270\|Ga0182036_10186421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1509	Open in IMG/M
3300021178\|Ga0210408_10946175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300021361\|Ga0213872_10015723	All Organisms → cellular organisms → Bacteria	3517	Open in IMG/M
3300021372\|Ga0213877_10190855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300021444\|Ga0213878_10249352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300021560\|Ga0126371_10184904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2170	Open in IMG/M
3300021560\|Ga0126371_10501555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1362	Open in IMG/M
3300021560\|Ga0126371_11458172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	814	Open in IMG/M
3300026507\|Ga0257165_1091543	Not Available	562	Open in IMG/M
3300026551\|Ga0209648_10811889	Not Available	511	Open in IMG/M
3300027071\|Ga0209214_1026381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300028047\|Ga0209526_10027122	All Organisms → cellular organisms → Bacteria → Proteobacteria	4018	Open in IMG/M
3300031544\|Ga0318534_10041726	All Organisms → cellular organisms → Bacteria	2548	Open in IMG/M
3300031545\|Ga0318541_10050809	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300031573\|Ga0310915_10525220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300031640\|Ga0318555_10004329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5651	Open in IMG/M
3300031640\|Ga0318555_10081385	Not Available	1686	Open in IMG/M
3300031764\|Ga0318535_10023305	All Organisms → cellular organisms → Bacteria	2411	Open in IMG/M
3300031771\|Ga0318546_10044539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2729	Open in IMG/M
3300031771\|Ga0318546_10247528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1226	Open in IMG/M
3300031771\|Ga0318546_10964897	Not Available	600	Open in IMG/M
3300031780\|Ga0318508_1161780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031796\|Ga0318576_10529719	Not Available	555	Open in IMG/M
3300031797\|Ga0318550_10199631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300031833\|Ga0310917_10015829	All Organisms → cellular organisms → Bacteria → Proteobacteria	4243	Open in IMG/M
3300031890\|Ga0306925_10355261	Not Available	1573	Open in IMG/M
3300031890\|Ga0306925_11961693	Not Available	554	Open in IMG/M
3300031897\|Ga0318520_10546691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	717	Open in IMG/M
3300031942\|Ga0310916_10255859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1476	Open in IMG/M
3300031945\|Ga0310913_10233373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1290	Open in IMG/M
3300032059\|Ga0318533_10063698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2484	Open in IMG/M
3300032090\|Ga0318518_10682813	Not Available	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.64%
Host-Associated	Host-Associated	5.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.64%
Plants	Host-Associated → Plants	5.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.21%
Loam	Environmental → Terrestrial → Soil → Loam	21.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.57%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.79%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.29%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.68%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.79%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.79%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_12088080	2170459003	Grass Soil	MSVCRLVGGLVGLALAAVVVTALVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT
E41_03159000	2170459005	Grass Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAP
INPhiseqgaiiFebDRAFT_1014858002	3300000364	Soil	AAVVVTVVVTVGSEVRAELAPAIVKEDPTSAPPAFSTGCLQAPWPYGCQWRXAPAKRIVRAARPX*
AF_2010_repII_A01DRAFT_10362371	3300000580	Forest Soil	MSVGRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAK
AF_2010_repII_A1DRAFT_100217921	3300000597	Forest Soil	MSVCRLVAGLVGLVLAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRSARPI*
AP72_2010_repI_A100DRAFT_10468541	3300000837	Forest Soil	MSVGRLAAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASEXRPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT
AP72_2010_repI_A001DRAFT_10395641	3300000893	Forest Soil	MSVGRLAAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSTPA
JGI12627J18819_100107113	3300001867	Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKENPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPA*
JGI12627J18819_101405501	3300001867	Forest Soil	LVAGLVGLALAAVVVIVLVAVGSEVRAELAPAIVKEAPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRGARPV*
JGI25382J37095_102199741	3300002562	Grasslands Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGGEVRAELAPAIVKDNAASATPSFSSGCLQAPWPYGCQWRNTPAKRIVRGARPT*
JGI25615J43890_10100301	3300002910	Grasslands Soil	DIWMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
JGI25617J43924_100157501	3300002914	Grasslands Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
JGI25616J43925_101000992	3300002917	Grasslands Soil	VCRLVAGLVGLALAAVVVTVLVAVGXXVRAELAPAVAKEGPASAPPAFSSGXLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0063356_1028120531	3300004463	Arabidopsis Thaliana Rhizosphere	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKENPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPT*
Ga0066395_100608771	3300004633	Tropical Forest Soil	AGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPAPAPPAFSSGCLQAPWPYGCQWRTVPAKRIVRGARPI*
Ga0066869_100108101	3300005165	Soil	GLVGLALAAVVVTVLVAVGGEVRAELAPAVVKEDTASAAPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0066674_105409891	3300005166	Soil	AGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRGARPT*
Ga0066676_103201052	3300005186	Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQW
Ga0066388_1008825583	3300005332	Tropical Forest Soil	MAGLVGLALAAIVVTVLVAVGTEVRAELAPAVAKEDLASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRGARPI*
Ga0066388_1009801202	3300005332	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGGEVRAELAPAVVKEDPASAAPAFSSGCVQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0066388_1013484371	3300005332	Tropical Forest Soil	VVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRTARPI*
Ga0066388_1015737742	3300005332	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPTKRIVRAARPT*
Ga0066388_1035942792	3300005332	Tropical Forest Soil	MRMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKDDPASAPPAFSSGCLQAPWPYGCQWRTAPAKRIVRGPRPM*
Ga0066388_1086384331	3300005332	Tropical Forest Soil	MSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAKRIVRS
Ga0008090_100664991	3300005363	Tropical Rainforest Soil	LVGLVLAAVVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAQRIVRTARPI*
Ga0008090_101832122	3300005363	Tropical Rainforest Soil	VGLVLAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRSARPI*
Ga0070703_103142841	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKENPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0066689_101535591	3300005447	Soil	AVRDIWMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0070707_1012543921	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GLVGLALAAVVVTVLVAVGSEVRAELAPAVAKENPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPT*
Ga0070699_10000183310	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSVCRLMAGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRGARPT*
Ga0070699_1001114791	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0066704_101537703	3300005557	Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVR
Ga0066905_1003771801	3300005713	Tropical Forest Soil	LRQSGWMLGDIRMSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSAPTKRIVRSARPT*
Ga0066905_1011689501	3300005713	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSTPAKRIVRGARPT*
Ga0066903_1010832762	3300005764	Tropical Forest Soil	MSVCRLVASLVGLALAAVVVTVLVAVGGEVRAELAPVVVKEDPASAAPALSSGCVQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0066903_1018450963	3300005764	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPAPAPPAFSSGCLQAPWPYGCQWRTVPAKRIVRGARPI*
Ga0066903_1020411051	3300005764	Tropical Forest Soil	LAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSPPAKRILRAARPT*
Ga0066903_1038368261	3300005764	Tropical Forest Soil	MSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT*
Ga0066903_1060167132	3300005764	Tropical Forest Soil	MSVCRLVAGLVGGALAAVVVTVLVAVGGEVRAELAPAIAKDIAKDSAAPATPSFSTGCLQAPWPYGCQWRSTPAKRIVRAARPT*
Ga0066903_1070283461	3300005764	Tropical Forest Soil	LALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSAPTKRIVRSARPT*
Ga0079222_121274742	3300006755	Agricultural Soil	MSVCRLVAGLMGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSTGCLQAPWPYGCQWRSAPAK
Ga0075428_1015771071	3300006844	Populus Rhizosphere	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAAR
Ga0075433_108860631	3300006852	Populus Rhizosphere	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPT
Ga0075435_1018723731	3300007076	Populus Rhizosphere	MSVCRLVAGLVGLALAAVVVIVLVAVGGEVRAELAPAIVKDNAASATPSFSSGCLQAPWPYGCQWRSTPAKRIVRAARPT*
Ga0099828_100473925	3300009089	Vadose Zone Soil	MSVCRLVGGLVGLALAAVVVTALVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0099827_100241417	3300009090	Vadose Zone Soil	MSVCRLVGGLVGLALAAVVVTALVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVGAARPI*
Ga0126374_107973742	3300009792	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT*
Ga0126380_102985242	3300010043	Tropical Forest Soil	MSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSAPTKRIVRSARPT*
Ga0126384_100540192	3300010046	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRTVPAKRIVRGARPI*
Ga0126384_100730963	3300010046	Tropical Forest Soil	LVGGALAAVVVTVLVAVGGEVRAELAPAIAKDIAKNSVASATPSFSTGCLQAPWPYGCQWRSTPAKRIVRAARPT*
Ga0126384_101131545	3300010046	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVIVLVVVGGEVRAELAPAIAKDDAASAAPSFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0126384_109219691	3300010046	Tropical Forest Soil	QSGRVLGDMRMSVGRLAAGLGGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT*
Ga0126382_102721362	3300010047	Tropical Forest Soil	MSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT*
Ga0099796_102936172	3300010159	Vadose Zone Soil	GLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0126370_114836801	3300010358	Tropical Forest Soil	LVLAAIVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRAAR
Ga0126378_111652142	3300010361	Tropical Forest Soil	MSVCRFVAGLVGLVLAAVVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRTARPI*
Ga0126381_1023298301	3300010376	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGGEVRAELAPAVVKEDPASAAPAFSSGCVQAPWPYGCQWRSAPAKRIVR
Ga0126381_1045196881	3300010376	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPAPAPPAFSSGCLQAPWPYGCQWRTVPAKR
Ga0126383_100201836	3300010398	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVIVLVVVGGEVRAELAPAIAKDDVASAAPSFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0126383_122969842	3300010398	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEDPASAPPAFSTGCLQAPWPYGCQWRTAPAKRIVRAARPT*
Ga0126383_129780822	3300010398	Tropical Forest Soil	VGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT*
Ga0124844_10987591	3300010868	Tropical Forest Soil	RRHDERSGACTIGTAVGDIRKSVCRLMAGLVGLALAAIVVTVLVAVGTEVRAELAPAVAKEDLASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRGARPI*
Ga0137383_105654151	3300012199	Vadose Zone Soil	MAGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRGARPT*
Ga0137365_1000891710	3300012201	Vadose Zone Soil	MAGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0137363_113766361	3300012202	Vadose Zone Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSA
Ga0137362_100635991	3300012205	Vadose Zone Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIVKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0137372_103652903	3300012350	Vadose Zone Soil	LVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0137369_105315182	3300012355	Vadose Zone Soil	MAGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVR
Ga0137368_100307413	3300012358	Vadose Zone Soil	MAGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRGARLT*
Ga0137385_112683882	3300012359	Vadose Zone Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPA
Ga0137375_100975864	3300012360	Vadose Zone Soil	MAGLVGLALAAVVVTVLVAVGGEVRAELAPAIAKDNAASATPSFSSGCLQAPWPYGCQWRSAPA
Ga0137360_101326532	3300012361	Vadose Zone Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGGEVRAELAPAIVKDNAASATPSFSSGCLQAPWPYGCQWRSTPAKRIVRGARPT*
Ga0137361_113172041	3300012362	Vadose Zone Soil	MSVCRLVGGLVGLALAAVVVTALVAVGSEVRAELAPAVAKEDPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0137413_112349641	3300012924	Vadose Zone Soil	GLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI*
Ga0126369_106539821	3300012971	Tropical Forest Soil	ICMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPAPAPPAFSSGCLQAPWPYGCQWRTVPAKRIVRGARPI*
Ga0126369_126096261	3300012971	Tropical Forest Soil	RLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT*
Ga0164305_122630051	3300012989	Soil	CGYWPAVRDIWMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAIEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0134085_103720792	3300015359	Grasslands Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGGEVRAELAPAIVKDNAASATPSFSSGCLQAPWPYGCQWRSAPAKRIVRAARPT*
Ga0132255_1035122461	3300015374	Arabidopsis Rhizosphere	MSVCRLVAGLVGLVLAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSTGCLQAPWPYGCQWRSAPAKRIVRAARPTT*
Ga0182036_101864212	3300016270	Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAVAEEGPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPPEAHREHPTYPTRSSA
Ga0210408_109461751	3300021178	Soil	AVRDIWMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPT
Ga0213872_100157231	3300021361	Rhizosphere	MSVYRLVAGLVGLALAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSAPVKRIVRAARPT
Ga0213877_101908552	3300021372	Bulk Soil	MSVYRLVAGLVGLALAAVVVTVVVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSAPVKRIVRAARPT
Ga0213878_102493522	3300021444	Bulk Soil	VGLALAAVVVTVVVAVGGEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSAPVKRIVRAARPT
Ga0126371_101849043	3300021560	Tropical Forest Soil	MSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAIAKDNAASETRPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT
Ga0126371_105015552	3300021560	Tropical Forest Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGGEVRAELAPAVVKEDLASAAPAFSSGCVQAPWPYGCQWRSAPAKRIVRAARPT
Ga0126371_114581721	3300021560	Tropical Forest Soil	MAGLVGLALAAIVVTVLVAVGTEVRAELAPAVAKEDLASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRGARPI
Ga0257165_10915432	3300026507	Soil	DIWMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI
Ga0209648_108118891	3300026551	Grasslands Soil	WMSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKEGPASAPPAFSSGCLQAPWPYGCQWRSAPAKRIVRAARPI
Ga0209214_10263812	3300027071	Forest Soil	MSVCRLVAGLVGLALAAVVVSVLVAVGSEVRAELAPAVAKEGPASAPQAFSSGCLQAPWPYGCQWRSAPAKRIVR
Ga0209526_100271222	3300028047	Forest Soil	MSVCRLVAGLVGLALAAVVVTVLVAVGSEVRAELAPAVAKENPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPT
Ga0318534_100417265	3300031544	Soil	MSVCRLVAGLVGLVLAAIVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRTARPI
Ga0318541_100508091	3300031545	Soil	TVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARPI
Ga0310915_105252202	3300031573	Soil	VGLVLAAVVVIVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARPI
Ga0318555_100043291	3300031640	Soil	MSVCRLVAGLVGLVLAAIVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRTARPIKGESQKSY
Ga0318555_100813851	3300031640	Soil	LVGLVLAAVVVIVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARPI
Ga0318535_100233055	3300031764	Soil	GLVGLVLAAVVVIVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARPI
Ga0318546_100445391	3300031771	Soil	AAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTDCLQAPWPYGCQWRSPPAKRIVRAARPT
Ga0318546_102475281	3300031771	Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAVAEEGPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAAR
Ga0318546_109648972	3300031771	Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGGEVRAELAPAVAKEGPASAPLAFSSGCLQAPWPYGCQWRSAPANR
Ga0318508_11617802	3300031780	Soil	SVCRLVAGLVGLVLAAIVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRTARPI
Ga0318552_102060791	3300031782	Soil	VIVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARP
Ga0318576_105297191	3300031796	Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAVAKEGPASAPPAFSTGCLQAPWPYGCQWRNAPAKRIVRAARPPEAHREHPTYPTRS
Ga0318550_101996312	3300031797	Soil	VGLVLAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARPT
Ga0310917_100158292	3300031833	Soil	MSVCRLVAGLVGLALAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSAPVKRIVRAARPT
Ga0306925_103552611	3300031890	Soil	RLVAGLVGLVLAAIVVTVVVAVGSEVRAELAPAVAKDEPVSAPPAFSTGCLQAPWPYGCQWRSPPAKRIVRTARPI
Ga0306925_119616931	3300031890	Soil	MSVGRLVAGLVGLALAAVVVTVLVAVGSEVRAEPAPAIAKDNAASEARPFSSGCLQAPWPYGCQWRSTPAKRIVRSARPT
Ga0318520_105466912	3300031897	Soil	LVLAAVVVIVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQWRSHPAKRIVRGARPI
Ga0310916_102558592	3300031942	Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAVAKEGPASAPPAFSTGCLQAPWPYGCQWRNAPAKRIVRAARPPEAHREHPTYPTRSSA
Ga0310913_102333732	3300031945	Soil	MSVCRLVAGLVGLALAAVVVIVLVAVGSEVRAELAPAVAEEGPASAPPAFSSGCLQAPWPYGCQWRNAPAKRIVRAARPT
Ga0318533_100636981	3300032059	Soil	MSVCRLVAGLVGLALAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTGCLQAPWPYGCQW
Ga0318518_106828131	3300032090	Soil	GLVLAAVVVTVVVAVGSEVRAELAPAVAKDEPASAPPAFSTDCLQAPWPYGCQWRSPPAKRIVRAARPT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084057

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences