Metagenome / Metatranscriptome Family F084058

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084058
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	62 residues
Representative Sequence	MLTQEERALLVDVQDRLLELYVLREQASKDKDWRRVDSLDADIAKAEARRREIRQFDTVGSA
Number of Associated Samples	55
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.27 %
% of genes near scaffold ends (potentially truncated)	57.14 %
% of genes from short scaffolds (< 2000 bps)	98.21 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.143 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere (19.643 % of family members)
Environment Ontology (ENVO)	Unclassified (33.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (56.250 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.89% β-sheet: 0.00% Coil/Unstructured: 41.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.4: YciF-like	d2gyqa1	2gyq	0.91614
a.23.1.1: HSC20 (HSCB), C-terminal oligomerisation domain	d1fpoa2	1fpo	0.90651
a.25.1.1: Ferritin	d3ka8a_	3ka8	0.90468
a.25.1.0: automated matches	d5hjfa_	5hjf	0.89934
f.5.1.0: automated matches	d1yc9a_	1yc9	0.89774

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13586	DDE_Tnp_1_2	0.89
PF00762	Ferrochelatase	0.89
PF00814	TsaD	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0276	Protoheme ferro-lyase (ferrochelatase)	Coenzyme transport and metabolism [H]	0.89
COG0533	tRNA A37 threonylcarbamoyltransferase TsaD	Translation, ribosomal structure and biogenesis [J]	0.89
COG1214	tRNA A37 threonylcarbamoyladenosine modification protein TsaB	Translation, ribosomal structure and biogenesis [J]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.14 %
Unclassified	root	N/A	17.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.14 %
Unclassified	root	N/A	17.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.14 %
Unclassified	root	N/A	17.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	81.25 %
Unclassified	root	N/A	17.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	81.25 %
Unclassified	root	N/A	17.86 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	72.32 %
Unclassified	root	N/A	17.86 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	72.32 %
Unclassified	root	N/A	17.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	72.32 %
Unclassified	root	N/A	17.86 %
Siccirubricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	72.32 %
Unclassified	root	N/A	17.86 %
Siccirubricoccus soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2001200001\|2001276954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1013	Open in IMG/M
3300002568\|C688J35102_119171485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300002568\|C688J35102_120191960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300003308\|Ga0006777J48905_1055898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300003321\|soilH1_10069591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1849	Open in IMG/M
3300003693\|Ga0032354_1092948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300004081\|Ga0063454_102008355	Not Available	511	Open in IMG/M
3300004153\|Ga0063455_101669871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300005329\|Ga0070683_102056544	Not Available	549	Open in IMG/M
3300005329\|Ga0070683_102326611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300005535\|Ga0070684_102290304	Not Available	509	Open in IMG/M
3300005615\|Ga0070702_100795690	Not Available	731	Open in IMG/M
3300005844\|Ga0068862_101562999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300006755\|Ga0079222_11993265	Not Available	570	Open in IMG/M
3300006804\|Ga0079221_11064632	Not Available	615	Open in IMG/M
3300006954\|Ga0079219_11515587	Not Available	608	Open in IMG/M
3300009101\|Ga0105247_11543858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300009553\|Ga0105249_12166771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300010039\|Ga0126309_10240794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1020	Open in IMG/M
3300010112\|Ga0127458_1117244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300010152\|Ga0126318_11019388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300010401\|Ga0134121_12077357	Not Available	602	Open in IMG/M
3300010403\|Ga0134123_12302901	Not Available	602	Open in IMG/M
3300011332\|Ga0126317_10795431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300012212\|Ga0150985_100861191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1016	Open in IMG/M
3300012212\|Ga0150985_101596421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus soli	636	Open in IMG/M
3300012212\|Ga0150985_102988990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300012212\|Ga0150985_104380926	Not Available	514	Open in IMG/M
3300012212\|Ga0150985_107931974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300012212\|Ga0150985_109897034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300012212\|Ga0150985_110127204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300012212\|Ga0150985_110576556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	741	Open in IMG/M
3300012212\|Ga0150985_111662352	Not Available	618	Open in IMG/M
3300012212\|Ga0150985_113401768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300012212\|Ga0150985_116801936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	853	Open in IMG/M
3300012212\|Ga0150985_118454558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300012212\|Ga0150985_118748306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300012212\|Ga0150985_120497180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	985	Open in IMG/M
3300012212\|Ga0150985_120869611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300012469\|Ga0150984_101622993	Not Available	536	Open in IMG/M
3300012469\|Ga0150984_101660075	Not Available	550	Open in IMG/M
3300012469\|Ga0150984_102221906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300012469\|Ga0150984_102513746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	717	Open in IMG/M
3300012469\|Ga0150984_103154777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300012469\|Ga0150984_104018198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300012469\|Ga0150984_106433797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300012469\|Ga0150984_106946889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300012469\|Ga0150984_107586283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	752	Open in IMG/M
3300012469\|Ga0150984_108105684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300012469\|Ga0150984_109827407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300012469\|Ga0150984_110254879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	806	Open in IMG/M
3300012469\|Ga0150984_112336311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	811	Open in IMG/M
3300012469\|Ga0150984_113698823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1084	Open in IMG/M
3300012469\|Ga0150984_113960910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300012469\|Ga0150984_114480883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300012469\|Ga0150984_117161580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300012469\|Ga0150984_118304380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
3300012469\|Ga0150984_119136901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300012469\|Ga0150984_120970027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1128	Open in IMG/M
3300012988\|Ga0164306_10795652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300014325\|Ga0163163_11136693	Not Available	844	Open in IMG/M
3300014497\|Ga0182008_10440258	Not Available	707	Open in IMG/M
3300014497\|Ga0182008_10975175	Not Available	504	Open in IMG/M
3300018476\|Ga0190274_11902595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	690	Open in IMG/M
3300020069\|Ga0197907_10009423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300020075\|Ga0206349_1665175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300020077\|Ga0206351_10093488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300020080\|Ga0206350_11139318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300020081\|Ga0206354_10982629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300020081\|Ga0206354_11030121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300020081\|Ga0206354_11379981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300020081\|Ga0206354_11632501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300020610\|Ga0154015_1540302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300020610\|Ga0154015_1652473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300025944\|Ga0207661_11946504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300025945\|Ga0207679_12124577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300026035\|Ga0207703_10877371	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300026075\|Ga0207708_10586165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300026116\|Ga0207674_11327352	Not Available	689	Open in IMG/M
3300030785\|Ga0102757_11323873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300030785\|Ga0102757_11426135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	599	Open in IMG/M
3300030858\|Ga0102759_1880758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300030858\|Ga0102759_1946341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300030861\|Ga0102755_1373529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300030902\|Ga0308202_1087763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300030903\|Ga0308206_1098106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300030959\|Ga0102747_11128205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	721	Open in IMG/M
3300030959\|Ga0102747_11258659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	751	Open in IMG/M
3300030960\|Ga0102745_1791960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	660	Open in IMG/M
3300031039\|Ga0102760_10792453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300031054\|Ga0102746_11007902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300031054\|Ga0102746_11007914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300031058\|Ga0308189_10056034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1114	Open in IMG/M
3300031058\|Ga0308189_10172033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	762	Open in IMG/M
3300031058\|Ga0308189_10515259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300031089\|Ga0102748_10010135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300031089\|Ga0102748_11577478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031089\|Ga0102748_11667577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	730	Open in IMG/M
3300031089\|Ga0102748_11790920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300031089\|Ga0102748_11828212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300031091\|Ga0308201_10033698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1183	Open in IMG/M
3300031091\|Ga0308201_10055975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300031091\|Ga0308201_10138399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300031091\|Ga0308201_10173412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300031091\|Ga0308201_10429129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300031092\|Ga0308204_10035741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300031092\|Ga0308204_10166281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300031093\|Ga0308197_10387827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300031114\|Ga0308187_10370728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300031938\|Ga0308175_103233618	Not Available	505	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.93%
Host-Associated	Host-Associated	41.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.14%
Plants	Host-Associated → Plants	41.07%
Aquatic	Environmental → Aquatic	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.07%
Freshwater	Environmental → Aquatic → Freshwater	1.79%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	20.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	13.39%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	20.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	13.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	19.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.07%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.29%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	13.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	8.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.57%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.68%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.79%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2001200001	Soil microbial communities from Waseca County, Minnesota, USA - Sample 10150	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003308	Avena fatua rhizosphere microbial communities - H4_Rhizo_Litter_20 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003693	Avena fatua rhizosphere microbial communities - H2_Rhizo_Litter_49 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030785	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030858	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030861	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 4C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030959	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 2A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030960	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031039	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031054	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031089	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 2B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2001322911	2001200001	Soil	MLTPEERALLVDIQDRLLELYVLREQASKAKDWRRVDSIDADIVEAEAQRKEVRQLDTVGSA
C688J35102_1191714851	3300002568	Soil	MLTQEERALLVDVQDRLLELYVLREQASKEKDWKRLDSLATDIAEAEARRQAIRQFDTVGSA*
C688J35102_1201919602	3300002568	Soil	MLTQEERALLVEVQDRLLELYVHREQASKTRDWKRVDSLDADIAEVEARRREIRRMDTVGSA*
Ga0006777J48905_10558981	3300003308	Avena Fatua Rhizosphere	SIMLTPEERALLTDVQDHLLELYVLEEQASNKEDWDRVNSLEADIADAEAQRTEIRQLDTVGSA*
soilH1_100695913	3300003321	Sugarcane Root And Bulk Soil	MLTPEERALLVDVQDRLLELYVLREHASRNEDWQRVDLIDAAIAEAEAQRREIRQMDTVGSA*
Ga0032354_10929481	3300003693	Avena Fatua Rhizosphere	GSTMLTQEERALLVDVQDRLLELYVLREQASKEKDWKRLDSLATDIAEAEARRQAIRQFDTVGSA*
Ga0063454_1020083551	3300004081	Soil	MLTQEERALLVDVQDRLLELYVLREQASKEKDWKRLDSLATDIAEAEARRQAIR
Ga0063455_1016698712	3300004153	Soil	MLTPEERALLTDVQDHLLELYVLKEQASNKNDWNRVQSLQADIAEAEAQRAEIRQLDMVGSA*
Ga0070683_1020565441	3300005329	Corn Rhizosphere	MLTQEERDILVEVQDRLLELYVYREQAYKSRDWRRVDCLDADIAAAEAKRQEIRRMDTVGSA*
Ga0070683_1023266111	3300005329	Corn Rhizosphere	ERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAERTEIRQLDTVGSA*
Ga0070684_1022903042	3300005535	Corn Rhizosphere	MLTQEERALLVDVQDRLLELYVLREQASKDKDWRRVDSLDADIAKAEAQRREIRQFDTVGSA*
Ga0070702_1007956902	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MLTQEERALLVDVQDRLLELYVHREQASKRRDWQRVDSLDADIAAAEARRREIRRMDTVGSA*
Ga0068862_1015629992	3300005844	Switchgrass Rhizosphere	MLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDADIAAAEARRREIRRMDTVGSA*
Ga0079222_119932651	3300006755	Agricultural Soil	MLTQDERDLHVEVQDRLLELYVYREQAYKSRDWRRVDCLDADIAAAEAKRQEIRRMDTVGSA*
Ga0079221_110646322	3300006804	Agricultural Soil	MLTQDERDLLVEVQDRLLELYVYREQAYKSRDWRRVDCLDADIAAAEAKRQEIRRMDTVGSA*
Ga0079219_115155871	3300006954	Agricultural Soil	MLTQEERDLLVEVQDRLLELYVYREQAYKSRDWKRVDCLDAAIAATEAKRQEIRRMDTVGSA*
Ga0105247_115438581	3300009101	Switchgrass Rhizosphere	MLTPEERALLTDVQDHLLELYVLKEQASNKKDWACVDLLDADIAEAEAERTEIRQLDTVGSA*
Ga0105249_121667713	3300009553	Switchgrass Rhizosphere	LLTDVQDHLLELYVLKEQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA*
Ga0126309_102407941	3300010039	Serpentine Soil	MLTEEERALLVDVQDRLLELYVLREQASKDKDWRRVDSLEADIAKAEAQRREIRQFDTVGSA*
Ga0127458_11172442	3300010112	Grasslands Soil	GMLTQEERALLVEVQDRLLELYVHREQASKTRDWKRVDSLDADIAEVEARRREIRQMDTVGSA*
Ga0126318_110193882	3300010152	Soil	DPLMLTQEERALLVDVQDRLLELYVLRERASKDNDWRRVDSIDVEIARTERKRQEIRRLDTVGSA*
Ga0134121_120773572	3300010401	Terrestrial Soil	MLTQEERALLVEVQDRVLELYVHREQASKTRDWQRVDSLDADIAAAEAKRREIRRMDTVGTA*
Ga0134123_123029011	3300010403	Terrestrial Soil	MLTQEERALLVDVQDRLLELYVHREQASKNGDWKRVNSIDADIAVAEARRQE
Ga0126317_107954312	3300011332	Soil	FAMLTQEERALLVDVQDRLLELYVHREQASKTGDWKRVDSIDADIAVAEARRQEIRQFDTVGSA*
Ga0150985_1008611912	3300012212	Avena Fatua Rhizosphere	GMLTQEERALLVEVQDRLLELYVHREQASKTRDWKRVDSLDADIAEVEARRREIRRMDTVGSA*
Ga0150985_1015964211	3300012212	Avena Fatua Rhizosphere	MLTAEERDLLVEVQDCLLELYVHREQANKNRDWKRVDSLDADIAAAEARRREIRQMDTVGTA*
Ga0150985_1029889903	3300012212	Avena Fatua Rhizosphere	MLTPEERALLTDVQDHLLELYVLEEQASNKEDWDRVNSLEADIADAEAQRTEIRQLDTVGSA*
Ga0150985_1043809261	3300012212	Avena Fatua Rhizosphere	MLTSEERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA*
Ga0150985_1079319741	3300012212	Avena Fatua Rhizosphere	RRVGMLTAEERDLLVEVQDRLLELYVHREQASKTRDWKRVDSLDADIAAAEARRREIRQMDTVGTA*
Ga0150985_1098970342	3300012212	Avena Fatua Rhizosphere	LTPEERALLTDVQDHLLELYVLKEQASNKNDWDRVHLLAADIAEAEAQRAEIRQLDTVGSA*
Ga0150985_1101272041	3300012212	Avena Fatua Rhizosphere	PTMLTQEERALLVDVQDRLLELYVFRERASKENDWRRLDSIEAEIAEAEAKRVQIRQLDTVGSA*
Ga0150985_1105765561	3300012212	Avena Fatua Rhizosphere	GDPTMLTQEERALLVDVQDRLLELYVLRERATKNMDWRLVDSVDAEISITERKRKEIRQLDTVGSA*
Ga0150985_1116623522	3300012212	Avena Fatua Rhizosphere	MLTQEERALLVDVQDRLLELYVLREQASKEKDWKRLDSLATDIAEAEARRQAILQFDTVGSA*
Ga0150985_1134017682	3300012212	Avena Fatua Rhizosphere	ALLVDVQDRLLELYVFRERATKNMNRQLVDSIEAEIAKAERRRKEIRQLDTVGSA*
Ga0150985_1168019361	3300012212	Avena Fatua Rhizosphere	EETPTMLTPEERALLVDVQDHLLELYVFRERATKDQDWRRVDAIDAEIARTERKRAEIRQLDTVGTA*
Ga0150985_1184545581	3300012212	Avena Fatua Rhizosphere	FGMLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDADIAAAEARRREIRRMDTVGSA*
Ga0150985_1187483061	3300012212	Avena Fatua Rhizosphere	ERALLVDVQDRLLELYVFRERASRENDWRRVDLIDAEIAVTETRRKQIRQLDTVGSA*
Ga0150985_1204971802	3300012212	Avena Fatua Rhizosphere	MLTPEERALLVDVQDRLLELYVLRERATKNMDWRLVDSIDAEISGAERRQEEIRQLDTVGSA*
Ga0150985_1208696111	3300012212	Avena Fatua Rhizosphere	ALLVDVQDRLLELYVFRERATKNMNRQLVDSIEAEIAKAEQRRKEIRQLDTVGSA*
Ga0150984_1016229932	3300012469	Avena Fatua Rhizosphere	MLTPEERALLVDVQDRLLELYVFRERATKNMNRQLVDSIEAEIAKAEQRRKEIRQLD
Ga0150984_1016600751	3300012469	Avena Fatua Rhizosphere	MFRGDPTMLTSEERALLVDVQDRLLELYVFRERATKNHDWQRVDAIDAEIVKTERKREQIRQLDTVGSA*
Ga0150984_1022219062	3300012469	Avena Fatua Rhizosphere	MLTPEERALLTDIQDRLIELYVLREYANKTGDAERIYSIQAEILKAETQRKEVRQFDTVGSA*
Ga0150984_1025137461	3300012469	Avena Fatua Rhizosphere	GDPTMLTPEERALLVDVQDRLLELYVFRERATKNNDWRLVDSIDAEIAQVERKRVEIRQLDTVGSA*
Ga0150984_1031547772	3300012469	Avena Fatua Rhizosphere	MLTQDERALLVEVQDRLLALYVYREQASKNRDWKRVDSLDADIAAAEARRREIRQFDTVGSA*
Ga0150984_1040181981	3300012469	Avena Fatua Rhizosphere	EETPTMLTQEERALLVDVQDRLLELYVFRERASKDNDWRRLDSIEAEIAEAEAKRVQIRQLDTVGSA*
Ga0150984_1064337971	3300012469	Avena Fatua Rhizosphere	MLTPEERALLTDVQDHLLELYVLKEQASNKNDWDRVDLLAADIAEAEAQRAEIRQLDTVGSA*
Ga0150984_1069468892	3300012469	Avena Fatua Rhizosphere	MLTLEERALLVDVQDRLLELYVHREQASKNRDWKRVDSLDADIAAAEARRQEIRQMDTVGSA*
Ga0150984_1075862833	3300012469	Avena Fatua Rhizosphere	MLTPEERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAQRTDIRQLDTVGSA*
Ga0150984_1081056842	3300012469	Avena Fatua Rhizosphere	GGSEMLTQEERALLVDVQDRLLELYVLREQASKDKDWKRVGSIDADIAEAEAQRREIRLFDTVGSA*
Ga0150984_1098274072	3300012469	Avena Fatua Rhizosphere	MLTQHERALLVDVQDRLLELYVLREQATKNKDWRRVDSIDADIAEAEARRKEIRQFDTVGSA*
Ga0150984_1102548792	3300012469	Avena Fatua Rhizosphere	GGGTMLTQEERALLVDVQDKLLELYVLRERASRERDWRRVDLIDADIAVVERRRAEIHQLDTIGSA*
Ga0150984_1123363112	3300012469	Avena Fatua Rhizosphere	EETPTMLTPEERALLVDVQDRLLELYVFRERATKNMNRQLVDSIEAEIAKAEQRRKEIRQLDTVGSA*
Ga0150984_1136988231	3300012469	Avena Fatua Rhizosphere	GGSTMLTQEERALLVDVQDRLLELYVLREQASKEKDWKRLDSLATDIAEAEARRQAIRQFDTVGSA*
Ga0150984_1139609103	3300012469	Avena Fatua Rhizosphere	GSIMLTPEERALLTDVQDHLLELYVLEEQASNKEDWDRVNSLEADIADAEAQRTEIRQLDTVGSA*
Ga0150984_1144808833	3300012469	Avena Fatua Rhizosphere	GMLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDADIAAAEARRREIRRMDTVGSA*
Ga0150984_1171615802	3300012469	Avena Fatua Rhizosphere	PTMLTQEERALLIDVQDRLLELYVFRERASRDNDWRLVDSLDAEIAITERKRERIRQLDTVGSA*
Ga0150984_1183043802	3300012469	Avena Fatua Rhizosphere	MLTQEERALLVDVQDRLLELYVLREQASKDKDWRRVDSLDADIAKAEARRREIRQFDTVGSA*
Ga0150984_1191369011	3300012469	Avena Fatua Rhizosphere	TMLTQEERALLVDVQDRLLELYVLREQASKDKDWERVDSLDTDIVKAEAQRREIRLFDTVGSA*
Ga0150984_1209700274	3300012469	Avena Fatua Rhizosphere	MLTPEERALLTDVQDHLLELYVLKEQASNKNDWNRVQSLQADIAEAEAQRAEIRQLDTIGSA*
Ga0164306_107956522	3300012988	Soil	MLTQEERALLVEVQDRLLELYVHREQASKTRDWKRIDSLDADIAEVEARRREIRRMDTVGSA*
Ga0163163_111366932	3300014325	Switchgrass Rhizosphere	MLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDADIATAEARRREIRRMDTVGSA*
Ga0182008_104402582	3300014497	Rhizosphere	MLTQEERALLVDVQDRLLELYVLREQASKDKDWKRLNSLEADIAEAEAQRREIRLFDTVGLA*
Ga0182008_109751751	3300014497	Rhizosphere	MLTSEERALLVDVQDRLLELYVFRERATKNQDWQRVDSIDAEIAKTERKRQEIRQLDTVGSA*
Ga0190274_119025951	3300018476	Soil	MLTPEERALLTDVQDHLLELYVLKEQASNKKDWDRVYSLNADIAEVEAQRAEIRQLDTVESA
Ga0197907_100094231	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	DPLMLTQEERALLVDVQDRLLELYVLRERASKDNDWRRVDSIDVEITKAERRRQEIRRLDTVGSA
Ga0206349_16651752	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MLTHEERALLVDVQDRLLELYVLREHASRNKDWERLDLIAAAIAEAEAERREIRQMDTVGSA
Ga0206351_100934882	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	GDPLMLTQEERALLVDVQDRLLELYVLRERASKDNDWRRVDSIDVEIAKADRRRQEIRRLDTVGSA
Ga0206350_111393181	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	GGSIMLTPEERALLTDVQDHLLELYVLKEQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA
Ga0206354_109826292	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MLTQEERALLVDVQDRLLELYVLRERASKENDWRRIDSIDVEIAKVEAKRKEIRQLDTVGSA
Ga0206354_110301211	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MLTHEELALMVDVQDRLLELYVLREHASRNKDWERLDLIAAAIAEAEAERREIRQMDTVGSA
Ga0206354_113799812	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDADIAAAEARRREIRRMDTVGSA
Ga0206354_116325012	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	GDLPMLTQEERALLVDVQDRLLELYVLRERASKDRDWRLIDSIDTEIAGAEAQRKEIRRLDTVGSA
Ga0154015_15403021	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	MLTQEERALLVDVQDRLLELYVLRERASKDNDWRRVDSIDVEIAKADRRRQEIRRLDTVGSA
Ga0154015_16524732	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	FGMLTQEERALLVEVQDRLLELYVHREQASKTRDWKRVDSLDADIAEVEARRREIRRMDTVGSA
Ga0207661_119465041	3300025944	Corn Rhizosphere	IMLTSEERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA
Ga0207679_121245772	3300025945	Corn Rhizosphere	RALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA
Ga0207703_108773711	3300026035	Switchgrass Rhizosphere	MLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDSDIAAAEARRREIRRMDTVG
Ga0207708_105861652	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MLTQEERALLVEVQDRLLELYVHREQASKTRDWKRVDSLDADIAEVEARRREIRRMDTVGSA
Ga0207674_113273522	3300026116	Corn Rhizosphere	MLTPEERALLTDVQDHLLELYVLKEQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA
Ga0102757_113238732	3300030785	Soil	PIMLTPQERDLLVDVQDRLLELYVLREQANQNRDWRRLNSIEADIAAAETQRKEIRQMDTVGSA
Ga0102757_114261351	3300030785	Soil	QEERALLVDVQDRLLELYVLREQASKDKDWRRVDSLDADIAKAEAQRREIRQFDTVGSA
Ga0102759_18807581	3300030858	Soil	EERALLVDVQDRLLELYVFRERATKENDWRRVDAIDAEIAVAEARRVKIRQLDTVGTA
Ga0102759_19463411	3300030858	Soil	EERALLVDVQDRLLELYVFRERATKNMNWQLVDSIDAEITKAERRRKQIRQMDTVGSA
Ga0102755_13735292	3300030861	Soil	EERALLVDVQDRLLELYVLREQASKDKDWRRVDSIDADIAKAEAQRREIRQFDTVGSA
Ga0308202_10877631	3300030902	Soil	DPIMLTPQERALLVDVQDRLLELYVFRERATKNMNWQLVNSIDTEIAKAERRRKEIRQLDTVGSA
Ga0308206_10981063	3300030903	Soil	IMLTPQERALLVDVQDRLLELYVFRERATKNMNWQLVNSIDTEIAKAERRRKEIRQLDTVGSA
Ga0102747_111282053	3300030959	Soil	DPTMLTPEERALLVDVQDHLLELYVFRERATKSQDWHRVDALDAEIARTEKKRAEIRQLDTVGSA
Ga0102747_112586593	3300030959	Soil	MLTPDERALLVDVQDRLLELYVFRERATKENDWRLVDSIDAEIAEVEARRAEIRQLDTVGSA
Ga0102745_17919603	3300030960	Soil	ERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA
Ga0102760_107924531	3300031039	Soil	MLTPEERALLVDVQDHLLELYVFRERATKSQDWHRVDALDAEIARTEKKRAEIRQLDTVGSA
Ga0102746_109448962	3300031054	Soil	VQDRLLELYVLREQANQNRDWRRLNSIEADIAAAETQRKEIRQMDTVGSA
Ga0102746_110079021	3300031054	Soil	EERALLVDVQDRLLELYVLREQASKDQDWKRLDSLEADIAEAEAQRREIRLFDTVGSA
Ga0102746_110079141	3300031054	Soil	LLVDVQDRLLELYVLREQASKDKDWRRVDSLEADIAKAEAQQREIRQFDTVGSA
Ga0308189_100560341	3300031058	Soil	MLTPQERDLLVDVQDRLLELYVLREQANQNRDWRRLNSIEADIAAAETQRKEIRQMDTVGSA
Ga0308189_101720333	3300031058	Soil	GDPIMLTPQERALLVDVQDRLLELYVFRERATKNMNWQLVNSIDTEIAKAERRRKEIRQLDTVGSA
Ga0308189_105152591	3300031058	Soil	GGSIMLTPEERALLTDVQDHLLELYVLKEQAGNKEDWDRVNSLDADIAEAEAQRTEIRQLDTVGSA
Ga0102748_100101351	3300031089	Soil	MLTSEERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAQRTEIRQLDTVGSA
Ga0102748_115774782	3300031089	Soil	ERALLVDVQDRLLELYVFRERATKNMNWQLVNSIDAEITKAERRRKEICQLDTVGSA
Ga0102748_116675773	3300031089	Soil	CRMLTPDERALLVDVQDRLLELYVFRERATKENDWRLVDSIDAEIAEVEARRAEIRQLDTVGSA
Ga0102748_117581112	3300031089	Soil	QDHLLELYVLKEQASNKNDWNRVQSLQADIAEAEAQRAEIRQLDIIGSA
Ga0102748_117909201	3300031089	Soil	ERALLVDVQDRLLELYVFRERATKNMNWQLVDSIDAEIAKAERRRKEIRPLDTVGSA
Ga0102748_118282121	3300031089	Soil	LTQEERALLVDVQDRLLELYVLRERATKDRDWRQVDWIDAEIVEVEARRAEIRQLDTVGS
Ga0308201_100336981	3300031091	Soil	EERALLTDVQDHLLELYVLRRQASNKKDWDRVDLLDADIAEAEAERTEIRQLDTVGSA
Ga0308201_100559753	3300031091	Soil	MLTQEERALLVDVQDRLLELYVLREQASKDQDWKRLDSLEADIAEAEARRREIRLFDTVGSA
Ga0308201_101383991	3300031091	Soil	PAGTARGDPIMLTPQERALLVDVQDRLLELYVFRERATKNMNWQLVNSIDTEIAKAERRRKEIRQLDTVGSA
Ga0308201_101734122	3300031091	Soil	MLTQEERALLVDVQDRLLELYVLREQASKDKDWRRVDSLDADIAKAEAQRREIRQFDTVGSA
Ga0308201_104291291	3300031091	Soil	GMLTQEERALLVEVQDRLLELYVHGEQASKTRDWQRVDSLDADIAAAEARRREIRRMDTVGSA
Ga0308204_100357413	3300031092	Soil	GFGMLTQEERALLVEVQDRLLELYVHREQASKTRDWQRVDSLDADIAAAEARRREIRRMDTVGSA
Ga0308204_101662813	3300031092	Soil	SIMLTPEERALLTDVQDHLLELYVLKEQASNKKDWDRVYSLNADIAEVEAQRAEIRQLDTVGSA
Ga0308197_103878271	3300031093	Soil	GGSIMLTPEERALLTDVQDHLLELYVLRRQASNKKDWDRVDLVDADIAEAEAQRTDIRQLDTVGSA
Ga0308187_103707282	3300031114	Soil	SIMLTPEERALLTDVQDHLLELYVLKEQAGNKEDWDRVNSLDADIAEAEAQRTEIRQLDTVGSA
Ga0308175_1032336182	3300031938	Soil	MLTFEERALLVQVQDRLLELYVHRDQATKAKDWERVDSIDADIAEAEAKRKEIRQMDTVGSA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084058

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences