Metagenome Family F084064

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084064
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	61 residues
Representative Sequence	MRQISIILATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAI
Number of Associated Samples	57
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.04 %
% of genes near scaffold ends (potentially truncated)	28.57 %
% of genes from short scaffolds (< 2000 bps)	81.25 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (55.357 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (38.393 % of family members)
Environment Ontology (ENVO)	Unclassified (56.250 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (85.714 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.89% β-sheet: 0.00% Coil/Unstructured: 61.11%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00400	WD40	27.68
PF00486	Trans_reg_C	2.68
PF08281	Sigma70_r4_2	1.79
PF00005	ABC_tran	1.79
PF10077	DUF2314	0.89
PF07568	HisKA_2	0.89
PF04392	ABC_sub_bind	0.89
PF13432	TPR_16	0.89
PF13857	Ank_5	0.89
PF01520	Amidase_3	0.89
PF04542	Sigma70_r2	0.89
PF08327	AHSA1	0.89
PF00313	CSD	0.89
PF13187	Fer4_9	0.89
PF00037	Fer4	0.89
PF13531	SBP_bac_11	0.89
PF06472	ABC_membrane_2	0.89
PF03466	LysR_substrate	0.89
PF00226	DnaJ	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.89
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.89
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.89
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.89
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.89
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.89
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
All Organisms	root	All Organisms	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
cellular organisms	root	All Organisms → cellular organisms	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.71 %
Longimicrobiia	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia	1.79 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.89 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.79 %
Longimicrobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales	1.79 %
Gemmatimonadetes bacterium 13_1_20CM_4_66_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_20CM_4_66_11	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Longimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae	1.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.79 %
unclassified Xanthobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae	0.89 %
Gemmatimonadetes bacterium 13_1_20CM_4_66_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_20CM_4_66_11	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Longimicrobium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium	1.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.79 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.89 %
Gemmatimonadetes bacterium 13_1_20CM_4_66_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_20CM_4_66_11	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Longimicrobium terrae	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	1.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.79 %
Xanthobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	0.89 %
Gemmatimonadetes bacterium 13_1_20CM_4_66_11	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_20CM_4_66_11	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004268\|Ga0066398_10180995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → unclassified Xanthobacteraceae → Xanthobacteraceae bacterium	546	Open in IMG/M
3300004633\|Ga0066395_10089105	All Organisms → cellular organisms → Bacteria → Proteobacteria	1463	Open in IMG/M
3300004633\|Ga0066395_10590050	Not Available	650	Open in IMG/M
3300004633\|Ga0066395_10777951	Not Available	573	Open in IMG/M
3300005332\|Ga0066388_100201907	All Organisms → cellular organisms → Bacteria → Proteobacteria	2609	Open in IMG/M
3300005332\|Ga0066388_100704955	All Organisms → cellular organisms → Bacteria → Proteobacteria	1616	Open in IMG/M
3300005332\|Ga0066388_102405929	All Organisms → cellular organisms → Bacteria → Proteobacteria	955	Open in IMG/M
3300005332\|Ga0066388_102871232	Not Available	880	Open in IMG/M
3300005332\|Ga0066388_103860910	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300005332\|Ga0066388_104185679	Not Available	735	Open in IMG/M
3300005332\|Ga0066388_108807374	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300005713\|Ga0066905_101115961	All Organisms → cellular organisms → Bacteria → Proteobacteria	701	Open in IMG/M
3300005713\|Ga0066905_101691394	Not Available	581	Open in IMG/M
3300005764\|Ga0066903_100262987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2680	Open in IMG/M
3300005764\|Ga0066903_101183555	Not Available	1418	Open in IMG/M
3300005764\|Ga0066903_103172569	Not Available	889	Open in IMG/M
3300005764\|Ga0066903_106317128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	619	Open in IMG/M
3300006755\|Ga0079222_11319597	Not Available	659	Open in IMG/M
3300006804\|Ga0079221_11662478	Not Available	519	Open in IMG/M
3300006804\|Ga0079221_11688244	Not Available	516	Open in IMG/M
3300006903\|Ga0075426_10081268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2316	Open in IMG/M
3300009792\|Ga0126374_10575307	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300009792\|Ga0126374_10693797	Not Available	765	Open in IMG/M
3300009792\|Ga0126374_11023503	Not Available	649	Open in IMG/M
3300010043\|Ga0126380_10010112	All Organisms → cellular organisms → Bacteria	4194	Open in IMG/M
3300010043\|Ga0126380_10100161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1736	Open in IMG/M
3300010043\|Ga0126380_10186781	All Organisms → cellular organisms → Bacteria → Proteobacteria	1372	Open in IMG/M
3300010043\|Ga0126380_10309176	All Organisms → cellular organisms → Bacteria → Proteobacteria	1129	Open in IMG/M
3300010046\|Ga0126384_10409359	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium 13_1_20CM_4_66_11	1147	Open in IMG/M
3300010046\|Ga0126384_10416739	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300010047\|Ga0126382_10559271	Not Available	933	Open in IMG/M
3300010047\|Ga0126382_10966396	Not Available	743	Open in IMG/M
3300010047\|Ga0126382_11332391	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300010358\|Ga0126370_10009883	All Organisms → cellular organisms → Bacteria	5052	Open in IMG/M
3300010358\|Ga0126370_10450108	All Organisms → cellular organisms → Bacteria → Proteobacteria	1073	Open in IMG/M
3300010358\|Ga0126370_11613047	Not Available	621	Open in IMG/M
3300010358\|Ga0126370_11933738	Not Available	575	Open in IMG/M
3300010359\|Ga0126376_10084907	Not Available	2366	Open in IMG/M
3300010359\|Ga0126376_10164500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1796	Open in IMG/M
3300010359\|Ga0126376_10581781	Not Available	1055	Open in IMG/M
3300010359\|Ga0126376_11168303	Not Available	782	Open in IMG/M
3300010359\|Ga0126376_11938693	Not Available	630	Open in IMG/M
3300010360\|Ga0126372_11226731	Not Available	775	Open in IMG/M
3300010360\|Ga0126372_11976258	Not Available	629	Open in IMG/M
3300010360\|Ga0126372_13093864	Not Available	516	Open in IMG/M
3300010361\|Ga0126378_10207437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2039	Open in IMG/M
3300010361\|Ga0126378_10445712	All Organisms → cellular organisms → Bacteria → Proteobacteria	1409	Open in IMG/M
3300010361\|Ga0126378_11708849	Not Available	715	Open in IMG/M
3300010366\|Ga0126379_10159091	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	2118	Open in IMG/M
3300010366\|Ga0126379_10341009	Not Available	1524	Open in IMG/M
3300010366\|Ga0126379_10541681	Not Available	1242	Open in IMG/M
3300010366\|Ga0126379_10725834	Not Available	1089	Open in IMG/M
3300010366\|Ga0126379_10760984	Not Available	1066	Open in IMG/M
3300010366\|Ga0126379_11578040	Not Available	762	Open in IMG/M
3300010366\|Ga0126379_12049670	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300010376\|Ga0126381_103662961	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300010376\|Ga0126381_104879403	Not Available	515	Open in IMG/M
3300010398\|Ga0126383_10070372	All Organisms → cellular organisms → Bacteria	3006	Open in IMG/M
3300012971\|Ga0126369_10978923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	933	Open in IMG/M
3300015371\|Ga0132258_10009864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	19715	Open in IMG/M
3300015374\|Ga0132255_105817902	Not Available	522	Open in IMG/M
3300016294\|Ga0182041_10944948	Not Available	777	Open in IMG/M
3300016294\|Ga0182041_11684856	Not Available	587	Open in IMG/M
3300016319\|Ga0182033_11162621	Not Available	690	Open in IMG/M
3300016357\|Ga0182032_10249265	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300016357\|Ga0182032_11157172	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300016404\|Ga0182037_10088746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2193	Open in IMG/M
3300016404\|Ga0182037_11718337	Not Available	560	Open in IMG/M
3300016422\|Ga0182039_11704096	Not Available	577	Open in IMG/M
3300016445\|Ga0182038_10279246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1356	Open in IMG/M
3300016445\|Ga0182038_10599645	Not Available	951	Open in IMG/M
3300017970\|Ga0187783_10016479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5457	Open in IMG/M
3300017970\|Ga0187783_10370169	Not Available	1043	Open in IMG/M
3300017970\|Ga0187783_10728963	Not Available	715	Open in IMG/M
3300017970\|Ga0187783_11155517	Not Available	558	Open in IMG/M
3300017974\|Ga0187777_10988268	Not Available	608	Open in IMG/M
3300017975\|Ga0187782_10803991	Not Available	727	Open in IMG/M
3300018060\|Ga0187765_11003378	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300018060\|Ga0187765_11111001	Not Available	549	Open in IMG/M
3300021178\|Ga0210408_10114726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2122	Open in IMG/M
3300021560\|Ga0126371_10122791	Not Available	2624	Open in IMG/M
3300021560\|Ga0126371_10170676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2252	Open in IMG/M
3300021560\|Ga0126371_10429968	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Longimicrobiia → Longimicrobiales → Longimicrobiaceae → Longimicrobium → Longimicrobium terrae	1465	Open in IMG/M
3300021560\|Ga0126371_10577500	Not Available	1273	Open in IMG/M
3300021560\|Ga0126371_13708012	Not Available	515	Open in IMG/M
3300027703\|Ga0207862_1239055	Not Available	534	Open in IMG/M
3300027874\|Ga0209465_10069852	All Organisms → cellular organisms → Bacteria → Proteobacteria	1701	Open in IMG/M
3300027874\|Ga0209465_10452111	Not Available	642	Open in IMG/M
3300031545\|Ga0318541_10051717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2111	Open in IMG/M
3300031681\|Ga0318572_10940519	Not Available	513	Open in IMG/M
3300031719\|Ga0306917_10381649	All Organisms → cellular organisms → Bacteria → Proteobacteria	1099	Open in IMG/M
3300031719\|Ga0306917_11502755	Not Available	518	Open in IMG/M
3300031736\|Ga0318501_10711146	Not Available	554	Open in IMG/M
3300031744\|Ga0306918_10439539	Not Available	1019	Open in IMG/M
3300031751\|Ga0318494_10426159	Not Available	771	Open in IMG/M
3300031768\|Ga0318509_10760483	Not Available	537	Open in IMG/M
3300031771\|Ga0318546_11141812	Not Available	547	Open in IMG/M
3300031890\|Ga0306925_11177498	Not Available	769	Open in IMG/M
3300031897\|Ga0318520_10994554	Not Available	530	Open in IMG/M
3300031912\|Ga0306921_10055044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4527	Open in IMG/M
3300031912\|Ga0306921_11069410	Not Available	906	Open in IMG/M
3300031945\|Ga0310913_10109415	All Organisms → cellular organisms → Bacteria → Proteobacteria	1878	Open in IMG/M
3300031946\|Ga0310910_10231273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1442	Open in IMG/M
3300031947\|Ga0310909_11597485	Not Available	517	Open in IMG/M
3300031954\|Ga0306926_10092964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3688	Open in IMG/M
3300031954\|Ga0306926_10246276	Not Available	2216	Open in IMG/M
3300032001\|Ga0306922_10250956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1902	Open in IMG/M
3300032059\|Ga0318533_11290663	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300032068\|Ga0318553_10726716	Not Available	519	Open in IMG/M
3300032076\|Ga0306924_10110751	All Organisms → cellular organisms → Bacteria	3114	Open in IMG/M
3300032261\|Ga0306920_100056651	All Organisms → cellular organisms → Bacteria	5708	Open in IMG/M
3300033289\|Ga0310914_11205923	Not Available	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.32%
Host-Associated	Host-Associated	2.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.32%
Plants	Host-Associated → Plants	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.79%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.32%
Loam	Environmental → Terrestrial → Soil → Loam	17.86%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	38.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066398_101809951	3300004268	Tropical Forest Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGSAPIDVMKMMRDAKDLPNENYPAH*
Ga0066395_100891052	3300004633	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYQAH*
Ga0066395_105900502	3300004633	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAN*
Ga0066395_107779511	3300004633	Tropical Forest Soil	MRQITVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRTPDPIDVMKMMRDAKALPNQSYPAH*
Ga0066388_1002019072	3300005332	Tropical Forest Soil	MRQITIVLATAVITATVTVASMMAISSSSTRTGAVMPASTPIDVMKMMKNAKDLPNQSYPSH*
Ga0066388_1007049552	3300005332	Tropical Forest Soil	MRQISIILATAVIAATVTVAGMMAFSSSSTRNGVVARGPGTIDVMKMMKDAKDLPNESYPAQ*
Ga0066388_1024059292	3300005332	Tropical Forest Soil	TAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH*
Ga0066388_1028712322	3300005332	Tropical Forest Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAK
Ga0066388_1038609101	3300005332	Tropical Forest Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAAVRESTPIDVMKMMKDAKDLPNQSYPAH*
Ga0066388_1041856792	3300005332	Tropical Forest Soil	MRQITIILVTAVLTAMVTVFSMMATSSNSVRTSAEVRAPDPIDVMKMMRDAKDLPNQSYPAH*
Ga0066388_1088073741	3300005332	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRTGVVAHGPAPIDVMKMMRDAKDLPNENYLAH*
Ga0066905_1011159612	3300005713	Tropical Forest Soil	MRQFSVILATAVITAVVTAASMMAISSSSSRSGVIASGPGPINVMKMMRDAKDLPNENYPAH*
Ga0066905_1016913942	3300005713	Tropical Forest Soil	MRQISIILATAVIAATVTVAGMMAFSSSSTRGGALARGPGPVNVMKMMRDAKDLPNESYPAH*
Ga0066903_1002629873	3300005764	Tropical Forest Soil	MRQIFIILATAVITATVTVASMMVISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0066903_1011835553	3300005764	Tropical Forest Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH*
Ga0066903_1031725693	3300005764	Tropical Forest Soil	MRQITIILVTTVLTAMVTVFSMMATSSNSVRTSAEVRAPDPIDVMKMMRDAKDLPNQSYPAQ*
Ga0066903_1063171282	3300005764	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSSSTRTGAVAPASPIDVMKMMKDAKDLPNQSYPAH*
Ga0079222_113195972	3300006755	Agricultural Soil	AQRPRVEAKMRQVTVILVTAVLTVMVTVFSMMAKSSNSVRTSAEVRAPDPIDVMKIMRDAKDLPNQSYPAD*
Ga0079221_116624781	3300006804	Agricultural Soil	MRQITVILVTAVLTVMVTVFSMMAKSSNSVRTSAEVRAPDPIDVMKIMRDAKDLPNQSYPAH*
Ga0079221_116882442	3300006804	Agricultural Soil	MRQISVILATAVITAAVTVASMMAISSSSTRTGVVAHGPGPIDVMKMMRDAKDLPNENYPAN*
Ga0075426_100812682	3300006903	Populus Rhizosphere	MRQVTVILVTAVLTVMVTVFSMMAKSSNSVRTSAEVRAPDPIDVMKIMRDAKDLPNQSYPAH*
Ga0126374_105753072	3300009792	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGSGSIDIMKMMRDAKGLPNENYPAN*
Ga0126374_106937971	3300009792	Tropical Forest Soil	MRQISIILATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAI*
Ga0126374_110235032	3300009792	Tropical Forest Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYP
Ga0126380_100101122	3300010043	Tropical Forest Soil	MRQIIVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRAPDPIDVMKMMRNAKALPNQSYPAH*
Ga0126380_101001613	3300010043	Tropical Forest Soil	MRQISIILATAVIAATVTVAGMMAFSSSSTRGGVVARGPGPVNVMKMMRDAKDLPNESYPAH*
Ga0126380_101867811	3300010043	Tropical Forest Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH*
Ga0126380_103091762	3300010043	Tropical Forest Soil	MMRQFSVILATAVITAVVTAASMMAISSSSSRSGVIASGPGPINVMKMMRDAKDLPNENYPAH*
Ga0126384_104093591	3300010046	Tropical Forest Soil	MRQIIVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRTPDPIDVMKMMRDAKALPNQSYPAH*
Ga0126384_104167392	3300010046	Tropical Forest Soil	VRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDIMKMMRDAKGLPSENYPAN*
Ga0126382_105592712	3300010047	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGGVAHGPGSIDIMKMMRDAKGLPSENYPAN*
Ga0126382_109663961	3300010047	Tropical Forest Soil	LATAVITATVTVASMMAISSTSTRTGAAVRASTPIDVMKMMRDAKDLPEQSYPAI*
Ga0126382_113323912	3300010047	Tropical Forest Soil	MRQISVILATAVIAATVTVAGMMAFSSSSSRSGVVARGPGPVDVMKMMRDAKDLPNESYPAQ*
Ga0126370_100098832	3300010358	Tropical Forest Soil	MRQITVILVTAVLTAMVTAFSMMATSSNSIRTSAELRAPDPIDVMKMMRDAKALPNQSYPAH*
Ga0126370_104501082	3300010358	Tropical Forest Soil	MRQVSVILATAIITAAVTVASMMAISSSSTRSGLVAHGSGSIDIMKMMRDAKGLPNENYPPN*
Ga0126370_116130471	3300010358	Tropical Forest Soil	AVITATVTVASMMVISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126370_119337382	3300010358	Tropical Forest Soil	MRQISIVLATAVITAAVTVASVMAISSSSRRTGASVRASSPIDVMKMMKDAKDLPNQS
Ga0126376_100849072	3300010359	Tropical Forest Soil	MMRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH*
Ga0126376_101645002	3300010359	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSTSTRTGAAVRASTPIDVMKMMRDAKDLPEQSYPAI*
Ga0126376_105817811	3300010359	Tropical Forest Soil	MRQIFIILATAVITATVTVASMMVICSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126376_111683031	3300010359	Tropical Forest Soil	HYRLREERKMREISIILVTAFITATVTVASMMAISASSTRTGAALRASTSIDVMKMMKDAKNLSEQSYPAN*
Ga0126376_119386931	3300010359	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSSSTRTGAVVPASPIDVMKMMKDAKDLPNQSYPAH*
Ga0126372_112267311	3300010360	Tropical Forest Soil	VTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126372_119762581	3300010360	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSSSWRTGAVVREATSIDVMKMMKDAKDLPNQSYPAY*
Ga0126372_130938641	3300010360	Tropical Forest Soil	MRQIFIILATAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126378_102074371	3300010361	Tropical Forest Soil	MRQISIVLATAVITATVTLASMMAISTSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAN*
Ga0126378_104457123	3300010361	Tropical Forest Soil	MRQISIVLATAVITAAVTVASMMAISSGSRRTGAFVRESTPIDVMKMMKDAKDLPNQSYPAH*
Ga0126378_117088492	3300010361	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYQ
Ga0126379_101590911	3300010366	Tropical Forest Soil	TVILVTAVLTAMVTAFSMMATSSNSIRTSAELRAPDPIDVMKMMRDAKALPNQSYPAH*
Ga0126379_103410091	3300010366	Tropical Forest Soil	MRQITIILVTTVLTAMVTAFSMMATSSNSIRTSAEVRAPDPIDVMKMMRNAKALPNQSYPAH*
Ga0126379_105416813	3300010366	Tropical Forest Soil	VITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN*
Ga0126379_107258342	3300010366	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDIMKMMRDAKGLPSENYPAN*
Ga0126379_107609843	3300010366	Tropical Forest Soil	MRQISIILATAVVTAIVTVAGMMAISSSSPRAGAVVRASTPIDVMKMMKDVKDLPEQSYPAN*
Ga0126379_115780402	3300010366	Tropical Forest Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAN*
Ga0126379_120496701	3300010366	Tropical Forest Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRSGVVAHGSSPIDVMKMMRDAKDLPNENYPAH*
Ga0126381_1036629612	3300010376	Tropical Forest Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKELPNENYPAH*
Ga0126381_1048794033	3300010376	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYP
Ga0126383_100703722	3300010398	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMRDAKDLPEQSYPAI*
Ga0126369_109789232	3300012971	Tropical Forest Soil	MRQISIILATAVITATVTVASMMAISSSSPRAGAVVRASTPIDVMKMMKDVKDLPEQSYPAN*
Ga0132258_100098642	3300015371	Arabidopsis Rhizosphere	MRQISVILATAVITAAVTVASMMAISSSSTRSGMVARGPGSIDVMQMMRDAKDLPNENYPAH*
Ga0132255_1058179021	3300015374	Arabidopsis Rhizosphere	MRQISVILATAVITAAVTVASMMAISSGSTRSGVVARGPGPIDVMKMMREAKDLPNENYPAH*
Ga0182041_109449482	3300016294	Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0182041_116848561	3300016294	Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVPASTPIDVMKMMKDAKDLPNRSYPAH
Ga0182033_111626212	3300016319	Soil	MRQISIILATAVITAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKDLPNQSYPTH
Ga0182032_102492652	3300016357	Soil	MRQIFIILTTAVITATVTVANMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0182032_111571722	3300016357	Soil	TAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0182037_100887463	3300016404	Soil	MRQIFIILTTAVITATGTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0182037_117183372	3300016404	Soil	SVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0182039_117040961	3300016422	Soil	MRQISIVLATAVITAAVTVASMMAISSGSRRTGAFVRESTPIDVMQMMKDAKDLPNQSYP
Ga0182038_102792461	3300016445	Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDI
Ga0182038_105996451	3300016445	Soil	MRQISIVLATAVITATVTVASMMAINSNSTRAGAVVRASNSLDVLKLMKDAKDLPE
Ga0187783_100164792	3300017970	Tropical Peatland	MRQITVILATAVLTAIVTVFSMMATGSNSVRISPVVGAPDPIDVMKLMREAKDLPNQSYQAN
Ga0187783_103701691	3300017970	Tropical Peatland	MRQITVILVTAALTAMATVFSMIATSSNPVRTVRTSAEVRAPDPIDVMKMMTDAKDLPNQSYPAH
Ga0187783_107289631	3300017970	Tropical Peatland	MHQITVILVTAVITATVTVFSMMATSSNPEQSGGEVHAYAPIDVMKMMREAKDLPTQSYPAH
Ga0187783_111555172	3300017970	Tropical Peatland	MRQITVILMTAVLTAIVTVFSMMATGSDSVRTGPVVGARDPIPDPIDVMKMMRDAKDLPNQSYQAN
Ga0187777_109882682	3300017974	Tropical Peatland	EESKMRQITVILVTAMLTAIVTVFSMMAISSNAVPGSTEVRTPNPIDIMKMMRDAKNLPNESYPAH
Ga0187782_108039911	3300017975	Tropical Peatland	MRAQRLGGESNMRQITVILATAVLTAIVTVFSMMATGSNSVRIGPVFGAPDPIDVMKLMREAKDLPNQSYQAN
Ga0187765_110033781	3300018060	Tropical Peatland	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVARGSGPIDVMKMMREAKDLPNENYPAH
Ga0187765_111110012	3300018060	Tropical Peatland	MRQITVILLTAVLTAMVTVFSMMATSSNSSRSRAEVGAPDPIDVMKMMRNAKDLPNQSYPAH
Ga0210408_101147263	3300021178	Soil	TAAVTVASMMAISSSSTRTGVVAHGPGPIDVMKMMRDAKDLPNENYLAH
Ga0126371_101227913	3300021560	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVARGSGSIDIMKMMRDAKGLPNENYPAN
Ga0126371_101706761	3300021560	Tropical Forest Soil	QFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPAPIDVMKMMRDAKDLPNENYPAH
Ga0126371_104299683	3300021560	Tropical Forest Soil	MRQITVILVTAVLTAMVTAFSMMATSSNSIRTSAEVRTPDPIDVMKMMRDAKALPNQSYPAH
Ga0126371_105775002	3300021560	Tropical Forest Soil	MRQISIVLATAVITATVTVASMMAISSSSTRTGAVVPASPIDVMKMMKDAKDLPNQSYPA
Ga0126371_137080122	3300021560	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYPAH
Ga0207862_12390551	3300027703	Tropical Forest Soil	MRQITVIVVTTAVTAMVTVFSMMATSSNSVRPGAEVRAPLPIDVMKMMRDAKDLPNENYPAN
Ga0209465_100698522	3300027874	Tropical Forest Soil	MRQISVILATAVITAAVTVASMMAISSSSTRSGVVAHGPSPIDVMKMMRDAKDLPNENYQAH
Ga0209465_104521111	3300027874	Tropical Forest Soil	MRQITVILVTAVLTAMVTVFSMMATSSNSVRTSAEVRAPDPIDVMKMMRDAKDLPNQSYPAH
Ga0318541_100517171	3300031545	Soil	LTTAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0318572_109405192	3300031681	Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENY
Ga0306917_103816492	3300031719	Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0306917_115027551	3300031719	Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAN
Ga0318501_107111461	3300031736	Soil	MRQISIVLATAVITATVTVASMMAISSSSTRTGAVVRASTPIDVMKMMKDAKDLPEQSYPRWGPGGPWADQVPY
Ga0306918_104395392	3300031744	Soil	MRQISIVLATAVITAAVTVASMMAISSGSRRTGAFVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0318494_104261591	3300031751	Soil	MRQIFIILTTAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0318509_107604832	3300031768	Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDIMK
Ga0318546_111418121	3300031771	Soil	MRQISIVLATAVITAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0306925_111774983	3300031890	Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDIMKMMRDVKDLPNENYPAN
Ga0318520_109945542	3300031897	Soil	MRQISIVLATAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQSYPAN
Ga0306921_100550445	3300031912	Soil	MRQISVILATAVITAAVTVASMMAISSSSTRNGVVAHGPGSIDIMKMMRDVKDLPNENYPAN
Ga0306921_110694101	3300031912	Soil	MRQITVILVTSVFTAAVTVFSMMAISSSPVRTGADMHAAVPIDVMQMMRDAKELPNQNY
Ga0310913_101094152	3300031945	Soil	MRQITVILVTAVLTATVTVFSMMAISSSSVRTGADVHASAPIDVMKMMRDAKDLPNQSYPAH
Ga0310910_102312731	3300031946	Soil	MRQITVILVTSVFTAAVTVFSMMAISSSPVRTGADMHAAVPIDVMQMMRDAKELPNQNYPAY
Ga0310909_115974851	3300031947	Soil	MRQIFIILTTAVITATVTVASMMAISSSSTRAGAAVRASTPIDVMKMMKDAKNLREQS
Ga0306926_100929642	3300031954	Soil	MRQFSVILATAVITAAVTVASMMAISSSSTRSGVVAHGPGSIDVMKMMRDAKDLPNENYPAN
Ga0306926_102462762	3300031954	Soil	MRQISIVLATAVITAAVTVASMMAISSSSTRTGAVVRESTPIDVMKMMKDAKDLPNQSYPAH
Ga0306922_102509563	3300032001	Soil	VLTATVTVFSMMAISSSSVRTGADVHASAPIDVMKMMRDAKDLPNQSYPAH
Ga0318533_112906632	3300032059	Soil	SEMRQITVILVTAVLTATVTVFSMMAISSSSVRTGADVHASAPIDVMKMMRDAKDLPNQSYPAH
Ga0318553_107267161	3300032068	Soil	MRQISIVLATAVITAAVTVASMMAISSSARRTGAVVRESTPIDVMKMMKDAKD
Ga0306924_101107516	3300032076	Soil	MRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMKDAKDLPNQSYPAN
Ga0306920_1000566512	3300032261	Soil	MRQISIVLATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMRDAKDLPEQSYPAI
Ga0310914_112059232	3300033289	Soil	MRQISIILATAVITATVTVASMMAISSTSTRTGAVVRASTPIDVMKMMRDAKDLPEQSYPAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084064

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences