Metagenome / Metatranscriptome Family F084070

Basic Information
Family ID	F084070
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	79 residues
Representative Sequence	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHVF
Number of Associated Samples	100
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	11.82 %
% of genes near scaffold ends (potentially truncated)	95.54 %
% of genes from short scaffolds (< 2000 bps)	94.64 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Most Common Taxonomy
Group	Unclassified (62.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (41.964 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.643 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.57% β-sheet: 25.49% Coil/Unstructured: 52.94%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
b.55.1.5: PH domain-like	d2al6a2	2al6	0.72
b.55.1.0: PH domain-like	d5ryoa3	5ryo	0.7
b.55.1.1: PH domain-like	d2coda1	2cod	0.67
b.55.1.0: PH domain-like	d3dxea_	3dxe	0.67
b.55.1.2: PH domain-like	d5u1ma_	5u1m	0.67

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03352	Adenine_glyco	11.61
PF01914	MarC	5.36
PF03061	4HBT	2.68
PF13360	PQQ_2	1.79
PF00076	RRM_1	1.79
PF13290	CHB_HEX_C_1	1.79
PF00174	Oxidored_molyb	0.89
PF01189	Methyltr_RsmB-F	0.89
PF13594	Obsolete Pfam Family	0.89
PF16884	ADH_N_2	0.89
PF14579	HHH_6	0.89
PF00677	Lum_binding	0.89
PF02787	CPSase_L_D3	0.89
PF13927	Ig_3	0.89
PF03979	Sigma70_r1_1	0.89
PF05960	DUF885	0.89
PF00483	NTP_transferase	0.89
PF00575	S1	0.89
PF04102	SlyX	0.89
PF00490	ALAD	0.89
PF00226	DnaJ	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	11.61
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	5.36
COG0113	Delta-aminolevulinic acid dehydratase, porphobilinogen synthase	Coenzyme transport and metabolism [H]	0.89
COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	Translation, ribosomal structure and biogenesis [J]	0.89
COG0307	Riboflavin synthase alpha chain	Coenzyme transport and metabolism [H]	0.89
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.89
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.89
COG2900	Uncharacterized coiled-coil protein SlyX (sensitive to lysis X)	Function unknown [S]	0.89
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.89
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
All Organisms	root	All Organisms	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
cellular organisms	root	All Organisms → cellular organisms	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	21.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	19.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	9.82 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	4.46 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.82 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3.57 %
unclassified Verrucomicrobiae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.82 %
Verrucomicrobiae bacterium Tous-C4TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium Tous-C4TDCM	0.89 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.82 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.89 %
Verrucomicrobiae bacterium Tous-C4TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium Tous-C4TDCM	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.82 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	0.89 %
Verrucomicrobiae bacterium Tous-C4TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium Tous-C4TDCM	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.50 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	9.82 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.89 %
Verrucomicrobiae bacterium Tous-C4TDCM	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium Tous-C4TDCM	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105766228	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	887	Open in IMG/M
3300000789\|JGI1027J11758_12759573	Not Available	586	Open in IMG/M
3300000955\|JGI1027J12803_102602096	All Organisms → cellular organisms → Bacteria	1889	Open in IMG/M
3300000955\|JGI1027J12803_104803697	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	863	Open in IMG/M
3300004114\|Ga0062593_100248319	All Organisms → cellular organisms → Bacteria → PVC group	1467	Open in IMG/M
3300004156\|Ga0062589_101828462	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300004157\|Ga0062590_102164037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	581	Open in IMG/M
3300005172\|Ga0066683_10486588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	754	Open in IMG/M
3300005174\|Ga0066680_10752464	Not Available	592	Open in IMG/M
3300005177\|Ga0066690_10899773	Not Available	565	Open in IMG/M
3300005180\|Ga0066685_10892142	Not Available	595	Open in IMG/M
3300005180\|Ga0066685_11049069	Not Available	536	Open in IMG/M
3300005328\|Ga0070676_10713610	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → unclassified Verrucomicrobiae → Verrucomicrobiae bacterium Tous-C4TDCM	733	Open in IMG/M
3300005332\|Ga0066388_102088499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1019	Open in IMG/M
3300005340\|Ga0070689_101327389	Not Available	648	Open in IMG/M
3300005439\|Ga0070711_100774307	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300005450\|Ga0066682_10170283	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300005450\|Ga0066682_10572985	Not Available	712	Open in IMG/M
3300005466\|Ga0070685_11025468	Not Available	620	Open in IMG/M
3300005526\|Ga0073909_10211152	Not Available	844	Open in IMG/M
3300005538\|Ga0070731_10897258	Not Available	587	Open in IMG/M
3300005557\|Ga0066704_10994575	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	518	Open in IMG/M
3300005577\|Ga0068857_102516823	Not Available	505	Open in IMG/M
3300005586\|Ga0066691_10603564	Not Available	653	Open in IMG/M
3300005615\|Ga0070702_101717740	Not Available	522	Open in IMG/M
3300005841\|Ga0068863_101299764	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300006755\|Ga0079222_10995018	Not Available	720	Open in IMG/M
3300006797\|Ga0066659_10392341	Not Available	1089	Open in IMG/M
3300006804\|Ga0079221_10622863	Not Available	733	Open in IMG/M
3300006914\|Ga0075436_101319849	Not Available	546	Open in IMG/M
3300007076\|Ga0075435_100933532	Not Available	757	Open in IMG/M
3300009012\|Ga0066710_100661749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1590	Open in IMG/M
3300009156\|Ga0111538_12293090	Not Available	678	Open in IMG/M
3300010304\|Ga0134088_10712394	Not Available	504	Open in IMG/M
3300010359\|Ga0126376_13153064	Not Available	510	Open in IMG/M
3300010362\|Ga0126377_11749079	Not Available	697	Open in IMG/M
3300010366\|Ga0126379_13846157	Not Available	503	Open in IMG/M
3300010376\|Ga0126381_104867414	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300010379\|Ga0136449_102414966	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300010403\|Ga0134123_10629233	Not Available	1037	Open in IMG/M
3300010403\|Ga0134123_13386908	Not Available	515	Open in IMG/M
3300011119\|Ga0105246_12183971	Not Available	538	Open in IMG/M
3300011270\|Ga0137391_11304884	Not Available	573	Open in IMG/M
3300012189\|Ga0137388_11024533	Not Available	761	Open in IMG/M
3300012199\|Ga0137383_10912847	Not Available	641	Open in IMG/M
3300012203\|Ga0137399_11261827	Not Available	622	Open in IMG/M
3300012206\|Ga0137380_11564693	Not Available	544	Open in IMG/M
3300012210\|Ga0137378_11159754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	688	Open in IMG/M
3300012211\|Ga0137377_10088768	Not Available	2919	Open in IMG/M
3300012350\|Ga0137372_10928853	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	614	Open in IMG/M
3300012351\|Ga0137386_10685584	Not Available	736	Open in IMG/M
3300012351\|Ga0137386_10722438	Not Available	716	Open in IMG/M
3300012357\|Ga0137384_11013948	Not Available	667	Open in IMG/M
3300012361\|Ga0137360_11277112	Not Available	634	Open in IMG/M
3300012362\|Ga0137361_10204373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1787	Open in IMG/M
3300012362\|Ga0137361_11110048	Not Available	712	Open in IMG/M
3300012582\|Ga0137358_10857542	Not Available	599	Open in IMG/M
3300012683\|Ga0137398_10837057	Not Available	643	Open in IMG/M
3300012917\|Ga0137395_10491027	Not Available	884	Open in IMG/M
3300012918\|Ga0137396_10438772	Not Available	968	Open in IMG/M
3300012922\|Ga0137394_10559453	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	969	Open in IMG/M
3300012925\|Ga0137419_10187871	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300012929\|Ga0137404_10098999	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2348	Open in IMG/M
3300012929\|Ga0137404_10711960	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300012944\|Ga0137410_11858189	Not Available	533	Open in IMG/M
3300013297\|Ga0157378_10945161	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300013297\|Ga0157378_11964989	Not Available	634	Open in IMG/M
3300014200\|Ga0181526_10818725	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	586	Open in IMG/M
3300014326\|Ga0157380_11073189	Not Available	843	Open in IMG/M
3300014745\|Ga0157377_11704343	Not Available	508	Open in IMG/M
3300015241\|Ga0137418_10350676	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1218	Open in IMG/M
3300015241\|Ga0137418_10551840	Not Available	912	Open in IMG/M
3300015264\|Ga0137403_10635976	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300016341\|Ga0182035_11841674	Not Available	548	Open in IMG/M
3300016371\|Ga0182034_10522715	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	993	Open in IMG/M
3300016404\|Ga0182037_10892196	Not Available	771	Open in IMG/M
3300017792\|Ga0163161_10906205	Not Available	747	Open in IMG/M
3300018433\|Ga0066667_10920991	Not Available	752	Open in IMG/M
3300019890\|Ga0193728_1098807	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300020016\|Ga0193696_1145169	Not Available	588	Open in IMG/M
3300020062\|Ga0193724_1056315	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300021168\|Ga0210406_10550778	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	906	Open in IMG/M
3300021180\|Ga0210396_11567542	Not Available	539	Open in IMG/M
3300021478\|Ga0210402_11703335	Not Available	557	Open in IMG/M
3300021479\|Ga0210410_10031443	All Organisms → cellular organisms → Bacteria	4604	Open in IMG/M
3300021560\|Ga0126371_13069195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	565	Open in IMG/M
3300024182\|Ga0247669_1070809	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	582	Open in IMG/M
3300024286\|Ga0247687_1012262	All Organisms → cellular organisms → Bacteria	1165	Open in IMG/M
3300025906\|Ga0207699_11069727	Not Available	597	Open in IMG/M
3300025916\|Ga0207663_10677969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	815	Open in IMG/M
3300026078\|Ga0207702_11576426	Not Available	650	Open in IMG/M
3300026116\|Ga0207674_12169033	Not Available	519	Open in IMG/M
3300026320\|Ga0209131_1153490	Not Available	1160	Open in IMG/M
3300026537\|Ga0209157_1356311	Not Available	527	Open in IMG/M
3300026551\|Ga0209648_10324427	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300026557\|Ga0179587_10907257	Not Available	581	Open in IMG/M
3300027821\|Ga0209811_10160887	Not Available	837	Open in IMG/M
3300030991\|Ga0073994_12306782	Not Available	625	Open in IMG/M
3300031057\|Ga0170834_101523881	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300031122\|Ga0170822_13889414	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300031231\|Ga0170824_118304405	Not Available	581	Open in IMG/M
3300031833\|Ga0310917_10813032	Not Available	631	Open in IMG/M
3300031893\|Ga0318536_10645306	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	528	Open in IMG/M
3300031912\|Ga0306921_10882673	Not Available	1016	Open in IMG/M
3300031939\|Ga0308174_10840606	Not Available	773	Open in IMG/M
3300031954\|Ga0306926_10431461	All Organisms → cellular organisms → Bacteria → PVC group	1625	Open in IMG/M
3300031954\|Ga0306926_10669949	Not Available	1261	Open in IMG/M
3300032009\|Ga0318563_10791474	Not Available	508	Open in IMG/M
3300033289\|Ga0310914_11786875	Not Available	519	Open in IMG/M
3300033412\|Ga0310810_10126502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	3007	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.50%
Host-Associated	Host-Associated	12.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.61%
Plants	Host-Associated → Plants	12.50%
Aquatic	Environmental → Aquatic	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.46%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.14%
Loam	Environmental → Terrestrial → Soil → Loam	6.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	17.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.46%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.46%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024182	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10	Environmental	Open in IMG/M
3300024286	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057662282	3300000364	Soil	MSLYQHDLFTLDLNKIIAVNQNEDDITVTIRTDDQRKIEVGTDSPQAAVELLNDLADQWEKAVG
JGI1027J11758_127595731	3300000789	Soil	MSLYQHPLFTLDLNKVVAVYQNEDELNVIIQTDDQRKLXVATESADAALEFLAEFANQWEKSAGTLLRHAKHVFLPAAI*
JGI1027J12803_1026020961	3300000955	Soil	MSLYQHPLFTLDLNKVVAVYQNEDELNVIIQTDDQRKLEVATESADAALEFLAEFANQWEKSAGTLLRHAKHVFLPAAIYSIQAEGDELYIYFRDHSVSF
JGI1027J12803_1048036971	3300000955	Soil	MSLYQHPLFTIDLDKVIAVSQNGEEATITIRTDDQRKIEVATASPEAAVEFLNEFGNSWESAVGPLLRHERHAFLTSAIYSIQAEGDEVYIYF
Ga0062593_1002483191	3300004114	Soil	MSLFKHESFTIDLNKIIAVYQDDDEGAVTIRTDDQRKIEVAASAPEAATELLNELADQWEKAVGPLLRHGRHLYLTSAIYSI
Ga0062589_1018284621	3300004156	Soil	MSLYQHELFTLNLNKVISVYQEPDEATVTIQTDDQRKIEVATDSPEAAAQLRMEFAAKWESAVGALLRHGQHAFLTSAIYSIQAQGNEVYIFFRD
Ga0062590_1021640371	3300004157	Soil	MSLYQHDLFTLDLNKIISVNQNEDEVTISIRTDDQRKIEVGTDSPEAAVELLNDLADQWEKAVGPLLRHERHVFLTGAI
Ga0066683_104865881	3300005172	Soil	MPYAWASMSLYQHPLFTIDLNKVIALYQNEDEAAVTIRTDDQRKIEVATTSPEEAAEFLNEFADQWEKAVGPLLRHDRY
Ga0066680_107524641	3300005174	Soil	MALYQHELFTIDLTKVIAVYQNEDDPTVTIRTDDQRKIEVASETPEAAFELLNEIADQWEKAVGALLRHGKHVFLPAAIYSIQAEGEE
Ga0066690_108997732	3300005177	Soil	MSLYRHELFTLDLNKVIAVYQNEEEAAVTIRTDDQRKIEVATPSPEAAVELLDEIAGQWEAAVGPLLRHGKHVFLTSAIYSI
Ga0066685_108921422	3300005180	Soil	MVQINLMSLYQHELFTLDLNKVIAVYQNEDEAAVTIRTDDQRKIEVVTASPEAAVEFLNDFSAQW
Ga0066685_110490692	3300005180	Soil	MSLYQHELFTIDLNKVIAVYQNEDEAAVTIRTDDQRKIEVATAAPEVAAELLNDLAAQWEKAVGALLRH
Ga0070676_107136101	3300005328	Miscanthus Rhizosphere	MQSACMSLYKHESFTLDLNKIIAVYQDEDEGAVTIRTDDQRKIEVATSAPEAATELLNELADQWEKAVGPLLRHGRHVYLTTAIYSIQVEGEELVIYFRDHSVSF
Ga0066388_1020884992	3300005332	Tropical Forest Soil	MSLYQHPLFTIDLNKVIAVSQNEDEATVTIRTDDQRKIEVATASPEAAVEFLNEFANSWE
Ga0070689_1013273892	3300005340	Switchgrass Rhizosphere	MALYQHEFFTLNLNKVISIFQEPDEATVTIQTDDQRKIEVATDSPEAAAELRMEFAAKWESAVGPLLRHGQHVFLTSAIYSIQAQGNEVFIFFRDYSVSFAMP
Ga0070711_1007743071	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSLYLHQLFTIDLNKVIAVYQNAEDSAFTIQTDDQRKIEVAVPSPDAAVESLNDFAAQWEKAAGSLLRHANHVFLPAAIYSIQAED
Ga0066682_101702831	3300005450	Soil	MPYAWASMSLYQHPLFTIDLNKVIAVYQNEDEAAVTIRTDDQRKIEVATASQEEAAEFLNEFADQWEKAVGPLLRHDKYDFLTAAMYSIQAEGEEVYIYFRDHSVSFPL
Ga0066682_105729851	3300005450	Soil	MSLYQHELFTIDLNKVIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLA
Ga0070685_110254682	3300005466	Switchgrass Rhizosphere	MALYQHEFFTLNLNKVISIFQEPDEATVTIQTDDQRKIEVATDSPEAAAELRMEFAAKWESAVGPLLRHGQHVFLTSAIYSIQAQGNEVFI
Ga0073909_102111522	3300005526	Surface Soil	MSLYQHPLFTIDLNKIITVSQNEDEATVTIRTDDQRKIEVATASAEAAVEFLNEFANAWE
Ga0070731_108972581	3300005538	Surface Soil	MSLYQHELFTLNLNKVIAVYQEPDDATVTIQTDDQRKIEVATDSSAAAAELRMEFAAKWEAAVGPLLRHGQHIFLTSAIYSIQAQ
Ga0066704_109945751	3300005557	Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRH
Ga0068857_1025168231	3300005577	Corn Rhizosphere	MSLFKHESFTIDLNKIIAVYQDDDDGAVTIRTDDQRKIEVAASTPEAATELLNELADQWEKAVGPLLRHGRHLYLTSAIYSIQVEDSEVYIYF
Ga0066691_106035642	3300005586	Soil	MPYAWASISLYQHPLFTIDLNKVIAVYQNEDEAAVTIRTDDQRKIEVATASQEEAAEFLNEFADQWEKA
Ga0070702_1017177401	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSLYQHSLFTIDLNKVVAISQNEEEAAITIRTDDQRKIEVATDSPDAAVELLNDIADQWEGSVGPLLRHGKNAFLTSAI
Ga0068863_1012997642	3300005841	Switchgrass Rhizosphere	MSLYRHELFTIDLNKVIAVYQIEEEAAVAIRTDDQRKIEVATDTPEAAIEFLNEFSNEWEKAVGPLLRHGKHVFLTAALYSIQAVGDEVFIYMRDH
Ga0079222_109950182	3300006755	Agricultural Soil	MSLYLHPLFTIDLNKVIAVYQNEDEPAFTIQTDDQRKIEVAAASSEAAVELLNDFAGQWEKAAGSLLRHANHVFLPAAIYSLQAEGE
Ga0066659_103923413	3300006797	Soil	MSLYRNELFTLDLNKVIAVYQNEEEAAVTIRTDDQRKIEVATASPEAAVELLNDFAGQWETAVGPLLRHGKHVFLTSAIY
Ga0079221_106228631	3300006804	Agricultural Soil	MSLYQHPLFTIDLNKVIALSQNGDETTITIRTDDQRKIEVATASQEAAVEFLNEFANSWETAVGPLMRHERHAF
Ga0075436_1013198491	3300006914	Populus Rhizosphere	VVAIDSTSGAFCVTLHYMSLYQHELFTIDLNKVIAINQEEDETTVTIRTDDQRKIEVGTDTPEAALELLNDLATQWEKGVGPLLRHE
Ga0075435_1009335322	3300007076	Populus Rhizosphere	MSLYQHQLFTLDLKKVIAVYQNEDESAVMIRTDDQRKIEVATDSPEAADQLLNDFASQWEAAVGSLFRHGKHVFLPAAIYSIQAEGDE
Ga0066710_1006617493	3300009012	Grasslands Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEQAVGALLRHGKHVFLIAAIYSIQVEGEE
Ga0111538_122930902	3300009156	Populus Rhizosphere	MSLFKHESFTINLNKIIAVYQDDDEGAVTIRTDDQRKLEVATSAPEAATELLNELTDQWEKAVG
Ga0134088_107123941	3300010304	Grasslands Soil	MSLYQHQLFTIDLNKVITVHQNEDEAAISIRTDDQRKLEVATDSPEAATELLNEFAAEWEKAVAPLLRHGKHVFLISA
Ga0126376_131530641	3300010359	Tropical Forest Soil	MSLYLHQLFTIDLSKVIAVYQNEDEPAITIRTDDQRKLEVATPSLEAAAELLNDFAAEWEKAAGSLLRHANHVFLPSAIYSIQVEGEELYVYFREYSVSFAL
Ga0126377_117490792	3300010362	Tropical Forest Soil	MSLYQHPLFTIDLNKVIAVSQNGDESTITIRTDDQRKIEVATASPEAAVEFLNEFANSWETAVGPLLRHERHAFLTSAIYSIQSEGDEVYIYFRDYSISFAAN
Ga0126379_138461571	3300010366	Tropical Forest Soil	MSLYQHPLFTIDLNKVIAVSQNQEEATVTIRTDDQRKIEVATPSAEAAVEFLNEF
Ga0126381_1048674141	3300010376	Tropical Forest Soil	MSLYQHELFTIDLNKVIAVNQEEDEKTITIRTDDQLKIEVGAESPEAAVELLNDFAAQWEKA
Ga0136449_1024149661	3300010379	Peatlands Soil	MALYQHPLFTIDLNKVIAVYQNEDEVTITILTDDQRKLEGANDSPEAALEFLNELADRWGQVGGPLLRHGRHVF
Ga0134123_106292331	3300010403	Terrestrial Soil	MSLYQHSLFTIDLNKVVAVSQNEEEAAITIRTDDQRKIEVATDSPDAAVELLNDIADQWE
Ga0134123_133869081	3300010403	Terrestrial Soil	MSLFKHESFTIDLNKIIAVYQDDDDGAVTIRTDDQRKIEVAASTPEAATELLNELADQWEKAVGPLLRHGRHLYLTSAIYS
Ga0105246_121839711	3300011119	Miscanthus Rhizosphere	MSLYQHELFTIDLNKVIAVNQEEDEKTITIRTDDQRKIEVGAESPEAAVELLNDLAAQWEKAVGP
Ga0137391_113048841	3300011270	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDDAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHV
Ga0137388_110245332	3300012189	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDDAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHVFLIAA
Ga0137383_109128472	3300012199	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDDAAVTIRTDDQRKIEVATAAPEAAADLLNDLAAQWEKAVGALLRHGKHVFLIAAI
Ga0137399_112618272	3300012203	Vadose Zone Soil	MSLYQHPLFTIDLNKVIAVSQNGEEATITIRTDDQRKIEVATASPEAAIEFLNDFANSWETAVGPLLRHERHAFLTSAIYSIQAEGDEVYIYFRDYSISF
Ga0137380_115530361	3300012206	Vadose Zone Soil	MSLYQHELFTLNLKKVISVFQQDPDEAAVIIQTDDQRKIEVATDSPQSAAELLMEF
Ga0137380_115646932	3300012206	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDDAAVTIRTDDQRKIEVATAAPEAAADLLNDLAAQWEKAVGALLRHGKHVFLIAAIYSIQVE
Ga0137378_111597543	3300012210	Vadose Zone Soil	MSLYQHPLFTIDLNKVIAVFQNEDEAAVTIRTDDQRKIEVATASQEEAAEFL
Ga0137377_100887681	3300012211	Vadose Zone Soil	MPYAWANMSLYQHPLFTIDLNKVIAVFQNEDDAAVTIRTDDQRKIEVATASQEEAAEFLNEFADQWEKAVGPLLRHDKYVFLTAAMYSIQAEGEEVYIY
Ga0137372_109288532	3300012350	Vadose Zone Soil	MALYQHPLFTIDLNKVIAVSQNEDEAAVTIRTDDQRKIEVATDSPEAAVEFLNEFASSLETAVGPLL
Ga0137386_106855842	3300012351	Vadose Zone Soil	MDGLLAEPYTTVSMALYQHQLFTIDLNKVIAVYQNEDESDVTIRTDDQRKIEVATDSPEAATELLTDFADQWEKAVTPLLRH
Ga0137386_107224382	3300012351	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAHWE
Ga0137384_110139483	3300012357	Vadose Zone Soil	MPLYQNPLFTIDLTKIIAVYQNEDDPAVSIRTDDQRKIEVATDNSQAAMDLLNEIAGQWESAVGPLLRHGKHVFLTSAIYSI
Ga0137360_112771121	3300012361	Vadose Zone Soil	MSLYRHELFTIDLNKVLAVYQVEEDAAVAIRTDDQRKIEVATDSPEAAVEFLTEFANEWERAVGPLLRHGKHVFLTAAVYSIQVDGEEVFIYM
Ga0137361_102043731	3300012362	Vadose Zone Soil	MSLYQHPLFTIDLNKVIALYQNEDEAAVTIRTDDQRKIEVATASPEEAVEFLNEFADQWEKAVGPLLRHDR
Ga0137361_111100482	3300012362	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWE
Ga0137358_108575421	3300012582	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDDAAVTIRTDDQRKIEVATAAPEAAADLLNDLAAQWEKAVGALLRHGKH
Ga0137398_108370571	3300012683	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHVFLIAAIYSIQVEGEEV
Ga0137395_104910272	3300012917	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHVF
Ga0137396_104387722	3300012918	Vadose Zone Soil	MSLYQHELFTIDLNKVIAVYQNEEDAAVTIRTDDQRKIEVATSSPEEAGQLLNQFAEQWEKAAGPLLRHGKHVFLTAAIYS
Ga0137394_105594533	3300012922	Vadose Zone Soil	MVQIDSMSLYQHELFTLDLNKVIAVYQNEDEAAVTIRTDDQRKIEVATASPEAAVELLNDFSAQWERAAGPLLRHGKHVFLTSAIYSIQVESE
Ga0137419_101878712	3300012925	Vadose Zone Soil	MDALQPISHTVASMSLYQHELFTIDLNKVIAIYQNDDDVSVTIRTDDQRKIEVGTESPEAAAELL
Ga0137404_100989993	3300012929	Vadose Zone Soil	MSLYRHELFTIDLNKIIAVYQIEEEAAVAIRTDDQRKIEVATDSPEAAVELLNEFAAQWEKAVGPLLRHG
Ga0137404_107119601	3300012929	Vadose Zone Soil	MSLYRHELFTINLNKIIAVYQIEEEAAVAIRTDDQRKIEVATDSPETAAELLTEFARQWEKAV
Ga0137410_118581891	3300012944	Vadose Zone Soil	MSLYRHELFTIDLNKIIAVYQIEEEAAVAIRTDDQRKIEVATDSPEAAVELLNEFAAQWEKAVGPLLRHGKHVFLTAAIYSIQAEGEEVFIYLRDHSVSFS
Ga0157378_109451612	3300013297	Miscanthus Rhizosphere	MSLYQHELFTLDLNKIIAVNQNEDELTVTIRTDDQRKIEVVAESPEAAVELLNDLAAQWESAVGPLLRHERHVFLTAAIYSIQ
Ga0157378_119649891	3300013297	Miscanthus Rhizosphere	MSLYQHGSFTIDLNKIIAVYQDEDEAAVTIRTDDQRKLEVATAAPEAAAELLSDLSEQWEKAVGPLLRHGKHIYLT
Ga0181526_108187251	3300014200	Bog	MALYKHPLFTINLTKVIAVYQNEDESSVTIQTDDQRKIEVNTDSAEAAVEFLNEFAGDWEAATGPLL
Ga0157380_110731892	3300014326	Switchgrass Rhizosphere	MSLFKHESFTIDLNKIIAVYQDDDDGAVTIRTDDQRKIEVAASTPEAATELLNELADQWEKAVGPLLRHGRHLYLTSAIYSIQVEDSEVYIY
Ga0157377_117043432	3300014745	Miscanthus Rhizosphere	MSLFKHESFTIDLNKIIAVYQDDDDGAVTIRTDDQRKIEVAASTPEAATELLNELADQWEKAVGPLLRHGRHLYLTSAIYSIQVEDSEVYIYFR
Ga0137418_103506761	3300015241	Vadose Zone Soil	MSLYQHPLFTIDLNKVIAVSQNEDEATVTIRTDDQRKIEVATASPEAAVEFLNEFANSWEGAVGPLLRHEKHAFLTSAIYSIQAEGDE
Ga0137418_105518401	3300015241	Vadose Zone Soil	MSLYQHELFTIDLNKIIAVYQNEDDAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHVFLVAAIYSIQV
Ga0137403_106359761	3300015264	Vadose Zone Soil	MSLYRHELFTINLNKIIAVYQIEEEAAVAIRTDDQRKIEVATDSPETAAELLTEFARQWEKAVGPLLRHGK
Ga0182035_118416742	3300016341	Soil	MSLYQHDLFTLDLNKIIAVNQNEDEITVTIRTDDQRKIEVGTDSPQAAVELLNDLADQWEKAVGPLLRHERHVFLTAAIYSIQVEGEEVFIYFRDHS
Ga0182034_105227151	3300016371	Soil	MSLYQHDLFTLDLNKIIAVNQNEDEITVTIRTDDQRKIEVGTDSPQAAVELLNDLADQWEKAVGPLLRHERHVFLTAAIYSIQVEGEE
Ga0182037_108921962	3300016404	Soil	MSLYQHQLFTIDLSKVITVHQNEDEAAITIRTDDQRKLEVATDSVEAATELLNEFAEQWEKAASPLLRHGKHVFLASATYSIQAEDA
Ga0163161_109062052	3300017792	Switchgrass Rhizosphere	MSLFKHESFTINLNKIIAVYQDDDEGAVTIRTDDQRKLEVATSAPEAATELLNELTDQWEKAV
Ga0066667_109209912	3300018433	Grasslands Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEQAVGALLRHGKHVFLIAAIYSIQVEG
Ga0066667_111495041	3300018433	Grasslands Soil	MSLYQHEFFTLNLNKVISVFQQDPDEGTVTIQTDDQRKIEVATDSPQAGAELL
Ga0193728_10988071	3300019890	Soil	MSLYQHELFTIDLNKVIAVYQNEDEAAITIRTDDQRKIEVATDSPQAALEFLNDFEGQWDKANGPLL
Ga0193696_11451692	3300020016	Soil	MLYIPINMSLYQHQLFTLDLNKVIAVYQNEAESAVMIRTDDQRKIEVATDSPEAADQLLNDFASQWEAAVGALFRHGKHVFLPAAIYSIQAEGDEVY
Ga0193724_10563151	3300020062	Soil	MSLYRHDLFTIDLNKIIAVYQIEEEAAVAIRTDDQRKIEVATDSPEAAVELLDEFAGQWEKAVGPLLRHGKHVFLTTAIYSIQAEGEEVFIYLRDHSVSFSVA
Ga0210406_105507782	3300021168	Soil	MSLYQHPLFTIDLNKVIAVSQNGDEATITIRTDDQRKIEVATASPEAAVEFLNEFANSWETAVGPLLRHERHAFLTSAIYSIQAEGDEVYIYFRD
Ga0210396_115675421	3300021180	Soil	MSLFQHELFTIDLNKIIAVNQDEDEITITIRTDDQRKIEVGTDSPDAAVELLNDLAAQWEKAVGPLLRHERHVFLTAAIYSIQV
Ga0210402_117033351	3300021478	Soil	MMDGRAILRQNGDMSLYQHPLFTIDLNKVIAVYQDNDEPAVTIRTDDQRKVEVATETPEAAVEFLDEFA
Ga0210410_100314431	3300021479	Soil	MSLYQHELFTLDLNKIIAVNQEEDETTVTIRTDDQRKIEVGTDSPEAAVELLDDLATQWEKAVGPLLRHERHVFLTAAIYSIQVQGAEVFIYFRDH
Ga0126371_130691951	3300021560	Tropical Forest Soil	MSLYQHDLFTLDLNKIIAVNQNEDDITVTIRTDDQRKIEVGTDSPQVAVELLNDLADQW
Ga0247669_10708091	3300024182	Soil	MSLYQHQLFTIDLSKVITVHQNEDEAAISIRTDDQRKLEVATDSPEAATDLLNEFATEWEKAVA
Ga0247687_10122621	3300024286	Soil	MSLYKHESFTIDLNKIIAVYQDEDEGAVTIRTDDQRKIEVRTSAPEAATELLNELADQWEKAVGPLLRHGRHVYLTAAIYSIQVEGEEVVIYFR
Ga0207699_110697271	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSLYQHELFTLDLNKIIAVNQEEDETTVTIRTDDQRKIEVGTDSPDAAVELLNDLATQWEKAVGP
Ga0207663_106779693	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSLYLHQLFTIDLNKVIAVYQNAEDSAFTIQTDDQRKIEVAVPSPDAAVESLNDFAAQWEKAAGSLLRHANHVFLPAAIYSIQAEDG
Ga0207702_115764261	3300026078	Corn Rhizosphere	MSLYQHPLFTIDLNKVIAVSQNEEEAAVTIRTDDQRKIEVATDSAEAAVEFLNEFANSWETAVGPLLRHEKHVFLTSAI
Ga0207674_121690332	3300026116	Corn Rhizosphere	MSLFKHESFTIDLNKIIAVYQDDDDGAVTIRTDDQRKIEVAASTPEAATELLNELADQWEKAVGPLLRHGRHLYLTSAIYSIQVEDSEVYIYFRDHSV
Ga0209131_11534901	3300026320	Grasslands Soil	MSLYQHQLFTIDLNKVIAVYQNEDEAAVIIRTDDQRKMEVATDSPDAASDLLSELAGQWEKAGRPLLRH
Ga0209157_13563111	3300026537	Soil	MSLYQHELFTIDLNKIIAVYQNEDEAAVTIRTDDQRKIEVATAAPEAAAELLNDLAAQWEKAVGALLRHGKHVFLIAAIYSIQVEGEEVFIYFRDHSVSFAL
Ga0209648_103244271	3300026551	Grasslands Soil	MSLYRHELFTIDLNKIIAVYQIEEEAAVAIRTDDQRKIEVATDSPEAAVELLNEFAAEWEKAVGPLLRHGKHVFLTSAIYSIQAEGE
Ga0179587_109072571	3300026557	Vadose Zone Soil	MSLYQHPLFTIDLNKVIAVSQNEDEATVTIRTDDQRKIEVATASPEAAVEFLNEFANS
Ga0209811_101608872	3300027821	Surface Soil	MSLYQHPLFTIDLNKIITVSQNEDEATVTIRTDDQRKIEVATASAEAAVEFLNEFANAWENA
Ga0073994_123067821	3300030991	Soil	MALYRHDLFTIDLNKVIAVFQNEDEPAVTIRTDDQRKIEVATASPEAAADLLNDLANQWEQAVAPLLRHGKYVFLP
Ga0170834_1015238811	3300031057	Forest Soil	MSLYQHELFTINLTKVRAVYQNEDETTVTIQTDDQRKLEVATESPEAGTEFLNDFAQQWEKAVGPLLRYGRHVFLPSAIYSIQAQGEELYIYFRDHP
Ga0170822_138894142	3300031122	Forest Soil	MSLYQHELFTINLTKVRAVYQNEDETTVTIQTDDQRKLEVATESPEAGTEFLNDFAQQWEKAVGPLLR
Ga0170824_1183044052	3300031231	Forest Soil	MSLYQHPLFTIDLNKVIAVSQNGDEATITIRTDDQRKIEVATASPEAAVEFLNDFANSWETAVGPLLRHEKHAFL
Ga0310917_108130321	3300031833	Soil	MSLYQHELFTLDLNKIIAVNQNEDEVTVTIRTDDQRKIEVGTDSPEAAVELLNDLAAQWERAVGPLLRHERHVFLTAAIYSIQVEGVEVF
Ga0318536_106453061	3300031893	Soil	MSLYQHDLFTLDLNKIIAVNQNEDEITVTIRTDDQRKIEVGTDSPQAAVELLNDLADQWEKAVGPLLR
Ga0306921_108826732	3300031912	Soil	MALYQHQLFTLDLSKVIAVYQNENESAVTIRTDDQRKIEVATDSPEAAGQLLGDFANQWESSVG
Ga0308174_108406061	3300031939	Soil	MSLYQHELFTIDLNKVIAVNQEEDEKTITIRTDDQRKIEVGAESPEAAVELLNDLAAQWEKAVGPLLRHERHVFLTSAMYSIQVEGTEV
Ga0306926_104314613	3300031954	Soil	MSLYQHDLFTLDLNKIIAVNQNEDEITVTIRTDDQRKIEVGTDSPQAAVELLNDLADQWEKAVGPLLRHERHVFLTAAIYSIQVEGEEVFIYFRDHSV
Ga0306926_106699492	3300031954	Soil	MALYQHQLFTLDLSKVIAVYQNENESAVTIRTDDQRKIEVATDSPEAAGQLLGDFANQWESSVGPLFRHGKHVFLPGAI
Ga0318563_107914743	3300032009	Soil	MSLYQHDLFTLDLNKIIAVNQNEDEITVTIRTDDQRKIEVGTDSPQAAVELLNDLADQWEKAVGPLLRHERHVFLTAAIY
Ga0310914_117868752	3300033289	Soil	MSLYQHPLFTIDLNKIIAVSRDEIEAAVTIRTDDQRKIEVGTASPEAATELLTDLSN
Ga0310810_101265022	3300033412	Soil	MSLYQHPLFTIDLNKVIALSQNGDETTITIRTDDQRKIEVATASPEAAVEFLNEFANSWETAVGPLLRHERHAFLTSAIYSIQAEGDEGIAG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084070

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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