Metagenome / Metatranscriptome Family F084196

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084196
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	82 residues
Representative Sequence	LLIRRQTRLSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPYQQAWI
Number of Associated Samples	92
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.86 %
% of genes near scaffold ends (potentially truncated)	98.21 %
% of genes from short scaffolds (< 2000 bps)	92.86 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.750 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.643 % of family members)
Environment Ontology (ENVO)	Unclassified (32.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.357 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 52.88% β-sheet: 0.00% Coil/Unstructured: 47.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF08857	ParBc_2	9.82
PF10908	DUF2778	6.25
PF03401	TctC	3.57
PF03562	MltA	1.79
PF06725	3D	1.79
PF06689	zf-C4_ClpX	1.79
PF03734	YkuD	1.79
PF00989	PAS	0.89
PF00072	Response_reg	0.89
PF04392	ABC_sub_bind	0.89
PF03551	PadR	0.89
PF01741	MscL	0.89
PF02371	Transposase_20	0.89
PF08327	AHSA1	0.89
PF00144	Beta-lactamase	0.89
PF08706	D5_N	0.89
PF13531	SBP_bac_11	0.89
PF07883	Cupin_2	0.89
PF13676	TIR_2	0.89
PF08734	GYD	0.89
PF14378	PAP2_3	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG4318	Uncharacterized conserved protein	Function unknown [S]	9.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.57
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.79
COG2821	Membrane-bound lytic murein transglycosylase	Cell wall/membrane/envelope biogenesis [M]	1.79
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.79
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.89
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.89
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.89
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.89
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.89
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.89
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.75 %
Unclassified	root	N/A	6.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.75 %
Unclassified	root	N/A	6.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.75 %
Unclassified	root	N/A	6.25 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.04 %
Unclassified	root	N/A	6.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.79 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	78.57 %
Unclassified	root	N/A	6.25 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.79 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	60.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.71 %
Unclassified	root	N/A	6.25 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.79 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	60.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.14 %
Unclassified	root	N/A	6.25 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.89 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	60.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.25 %
Unclassified	root	N/A	6.25 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	60.71 %
Unclassified	root	N/A	6.25 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.57 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	60.71 %
Unclassified	root	N/A	6.25 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	1.79 %
Bradyrhizobium sp. LTSP885	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885	0.89 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	0.89 %
Actinomadura rudentiformis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rudentiformis	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10132686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10136154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1075877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1089932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10111454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1060523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300000955\|JGI1027J12803_100119793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	678	Open in IMG/M
3300001867\|JGI12627J18819_10482994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	509	Open in IMG/M
3300004633\|Ga0066395_10989075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300005187\|Ga0066675_10085608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2045	Open in IMG/M
3300005332\|Ga0066388_101727381	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300005713\|Ga0066905_100593377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	936	Open in IMG/M
3300005713\|Ga0066905_101142970	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005764\|Ga0066903_107486400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	563	Open in IMG/M
3300005764\|Ga0066903_108119685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300005764\|Ga0066903_108154179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300005843\|Ga0068860_101808779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300006028\|Ga0070717_10308569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1408	Open in IMG/M
3300006578\|Ga0074059_12035696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	546	Open in IMG/M
3300006904\|Ga0075424_101040711	Not Available	873	Open in IMG/M
3300009162\|Ga0075423_11222237	Not Available	802	Open in IMG/M
3300010043\|Ga0126380_10600178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	867	Open in IMG/M
3300010043\|Ga0126380_11482696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300010046\|Ga0126384_10518693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1030	Open in IMG/M
3300010047\|Ga0126382_11681954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300010047\|Ga0126382_12280040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	523	Open in IMG/M
3300010358\|Ga0126370_10266924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1337	Open in IMG/M
3300010359\|Ga0126376_10537856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1090	Open in IMG/M
3300010361\|Ga0126378_12791483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300010366\|Ga0126379_11428725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300010366\|Ga0126379_12695248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	594	Open in IMG/M
3300010366\|Ga0126379_13215244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300010376\|Ga0126381_103066676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300010376\|Ga0126381_104409805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300010398\|Ga0126383_10833314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1006	Open in IMG/M
3300010398\|Ga0126383_11292541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	819	Open in IMG/M
3300010398\|Ga0126383_12327172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300012199\|Ga0137383_10691542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	745	Open in IMG/M
3300012201\|Ga0137365_10146405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1775	Open in IMG/M
3300012202\|Ga0137363_10033077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3589	Open in IMG/M
3300012202\|Ga0137363_10626390	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300012204\|Ga0137374_10104937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2651	Open in IMG/M
3300012205\|Ga0137362_10474783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1082	Open in IMG/M
3300012207\|Ga0137381_10717486	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300012210\|Ga0137378_11307086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	641	Open in IMG/M
3300012350\|Ga0137372_10262459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1353	Open in IMG/M
3300012353\|Ga0137367_10167112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1601	Open in IMG/M
3300012356\|Ga0137371_10182148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1646	Open in IMG/M
3300012357\|Ga0137384_11341553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300012359\|Ga0137385_10921355	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300012361\|Ga0137360_10677321	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300012922\|Ga0137394_11059506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	672	Open in IMG/M
3300012948\|Ga0126375_10719112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	780	Open in IMG/M
3300012957\|Ga0164303_10574493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300012957\|Ga0164303_11238018	Not Available	548	Open in IMG/M
3300012971\|Ga0126369_10806098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1021	Open in IMG/M
3300012971\|Ga0126369_11385686	Not Available	793	Open in IMG/M
3300012977\|Ga0134087_10141736	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300014325\|Ga0163163_12241795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	605	Open in IMG/M
3300015371\|Ga0132258_10903794	All Organisms → cellular organisms → Bacteria	2229	Open in IMG/M
3300015373\|Ga0132257_102247282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706	Open in IMG/M
3300016294\|Ga0182041_10510891	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300016319\|Ga0182033_10690121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	893	Open in IMG/M
3300016319\|Ga0182033_11480909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300016357\|Ga0182032_10646989	Not Available	883	Open in IMG/M
3300016357\|Ga0182032_11790504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300016422\|Ga0182039_11855926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300016445\|Ga0182038_11013589	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300016445\|Ga0182038_11957630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300018429\|Ga0190272_11960141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	618	Open in IMG/M
3300018433\|Ga0066667_11545160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	588	Open in IMG/M
3300018481\|Ga0190271_11127025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300019875\|Ga0193701_1107720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300019886\|Ga0193727_1167961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300021168\|Ga0210406_10426543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1059	Open in IMG/M
3300021168\|Ga0210406_10790319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	723	Open in IMG/M
3300021475\|Ga0210392_11356165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300021560\|Ga0126371_11147902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300025899\|Ga0207642_10793418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300025915\|Ga0207693_10004589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rudentiformis	11655	Open in IMG/M
3300025960\|Ga0207651_12029723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300026121\|Ga0207683_10270028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1554	Open in IMG/M
3300026277\|Ga0209350_1066190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1019	Open in IMG/M
3300026308\|Ga0209265_1242187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300026331\|Ga0209267_1312629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300026552\|Ga0209577_10718569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300028707\|Ga0307291_1170561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	557	Open in IMG/M
3300028721\|Ga0307315_10290750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300028744\|Ga0307318_10280924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300028755\|Ga0307316_10320474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300031640\|Ga0318555_10075083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1753	Open in IMG/M
3300031680\|Ga0318574_10040284	All Organisms → cellular organisms → Bacteria	2413	Open in IMG/M
3300031682\|Ga0318560_10068576	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300031713\|Ga0318496_10411487	Not Available	747	Open in IMG/M
3300031744\|Ga0306918_10030110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3419	Open in IMG/M
3300031769\|Ga0318526_10100706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1153	Open in IMG/M
3300031777\|Ga0318543_10074414	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1429	Open in IMG/M
3300031781\|Ga0318547_10149233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1373	Open in IMG/M
3300031798\|Ga0318523_10615679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031831\|Ga0318564_10030046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2309	Open in IMG/M
3300031833\|Ga0310917_10571031	All Organisms → cellular organisms → Bacteria → Proteobacteria	768	Open in IMG/M
3300031846\|Ga0318512_10572196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300031854\|Ga0310904_10169994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1286	Open in IMG/M
3300031910\|Ga0306923_10378753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1612	Open in IMG/M
3300031945\|Ga0310913_10788389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	670	Open in IMG/M
3300031945\|Ga0310913_10966948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300032039\|Ga0318559_10546060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300032044\|Ga0318558_10489746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP885	614	Open in IMG/M
3300032059\|Ga0318533_11087249	Not Available	586	Open in IMG/M
3300032066\|Ga0318514_10080902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1622	Open in IMG/M
3300032089\|Ga0318525_10634071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300033289\|Ga0310914_11130119	All Organisms → cellular organisms → Bacteria → Proteobacteria	685	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.96%
Host-Associated	Host-Associated	8.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.96%
Plants	Host-Associated → Plants	8.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.68%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.04%
Loam	Environmental → Terrestrial → Soil → Loam	8.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.46%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101326862	3300000597	Forest Soil	LLIRRKTRLNRGVKDILVTGITVTMLLASGATASAQNIFEALFGRIAPSPGPVPDANFTARDRRELANPPYRQ
AF_2010_repII_A1DRAFT_101361541	3300000597	Forest Soil	LLIRRQSRSSRGVKDILVTGITVTMLLTSVATASAQNIFEALFGRVAPAPGPVPDANFTARDRQQLSNPPYRQ
AF_2010_repII_A100DRAFT_10758771	3300000655	Forest Soil	MGANRGPFALLIRRQTRLSRGVKYILVTGITVTTLLTSVATASAQNIFQALFGRLAPAPGPVPDANFTARDRRELAHPPYQQAWIA
AF_2010_repII_A100DRAFT_10899322	3300000655	Forest Soil	LLIRRQTRLSRGVKHILVTGVTVTTLLTAVATASAQNIFEALFGRMASPPGPVPDANFTARDRRELANPPYRQAWI
AF_2010_repII_A001DRAFT_101114542	3300000793	Forest Soil	LLIRRKTRLNRGVKDILVTGITVTMLLASGATASAQNIFEALFGRIAPSPGPVPDANFTARDRRXLANPPYRQA
AP72_2010_repI_A100DRAFT_10605232	3300000837	Forest Soil	LLIRRQSRSSRGVKDILVTGITVTMLLTSXATASAQNIFEALFGRVAPSPGPVPDANFTARDRQQLANPPYRQAWI
JGI1027J12803_1001197931	3300000955	Soil	VRLGIVGARLGGPFALLIRRQTRLRRGVKDILVTVITVTTLLTSVATASAQNFFEALFGRMATPPGPVPDANFTARDRH
JGI12627J18819_104829941	3300001867	Forest Soil	VRLGIVGARVGGPFALLIRRQTRLSRGVKDILVTGITVTTLLSSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPYQQAWIPPAYRR
Ga0066395_109890751	3300004633	Tropical Forest Soil	LLIRRQTRLSRGVKHILVTGVTVTTLLTAVATASAQNIFEALFGRMASPPGPVPDANFTARDRRELANP
Ga0066675_100856081	3300005187	Soil	LLIRRQTRLSRGVKDVLVTGMMVTMLLTSVATASAQNIFEALFGRLAAPPGPVPDANFTARDRQQLANP
Ga0066388_1017273811	3300005332	Tropical Forest Soil	MRDGAWGSSARDSGAPLSIRRQTGLRRGVKDILVAGITVTTLLTSVATASAQNFFEALFGRLAPAPGPVPDAHFTARDRQQLANPPYRQAWIP
Ga0066905_1005933773	3300005713	Tropical Forest Soil	LSIRRQTRLSRGVKDILVTGITVTTLLTSVATASAQNFFEALFGRLAPAPGPVPDAHFTARDRQELANPPYRQAY
Ga0066905_1011429702	3300005713	Tropical Forest Soil	MVRLGIVGARRGTLLLIRRQTRLSRGVKDMLVTGITVTTLLTSAATASAQNFFEALFGRPGFSPGPVPDANFTARDRRELANPPYRQAW
Ga0066903_1074864001	3300005764	Tropical Forest Soil	LLIRRQTRLSRGVKHILVTGITVMTLLTSVATASAQNIFQALFGRLAPAPGPVPDANFTARDRRELAHPPYQQAWIAPAYRRQVV
Ga0066903_1081196851	3300005764	Tropical Forest Soil	LLIRRQIRLRRGVKEILVAGITVTALLTSVATASAQNIFQALFGGMAAPPPPVPDANFTARDRQQLANP
Ga0066903_1081541791	3300005764	Tropical Forest Soil	LLIRRQTRLSRGVKHILVTGVTVTTLLTSVATASAQNIFEALFGRMASPPGPVPDANFTARDRREL
Ga0068860_1018087792	3300005843	Switchgrass Rhizosphere	VRDSGEPFAFLARAQTRLSRGVKGILMTGITVTTLLTSAATAFAQNIFEALFGGPLSSPVRVPDANFTARDRQQ
Ga0070717_103085694	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MGARVGGPFALSIRRQTGLSRGVKYMFVTGITATTLLTSVATGSAQNFFEALFGRPVRSPSARYPGPVPDANFTARDRQELANTPYQQAHIP
Ga0074059_120356961	3300006578	Soil	VRLGIVGARVGGPFALLIRRQTRLSRGVKDILVTGITVTTLFTSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPYQQAWIPPAYRRQVVRYHRQEA
Ga0075424_1010407112	3300006904	Populus Rhizosphere	VRLGIVGARVGGPFALLIRRQTGSSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPY
Ga0075423_112222371	3300009162	Populus Rhizosphere	MRRQTRLSRGVKDILVTGITVTTLFSSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPYQQAWIPPAYRRQ
Ga0126380_106001781	3300010043	Tropical Forest Soil	LLIRRQTRLSRGVKNILVTGITATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQLANPPYRQAWIPPDYRRSISPQGSARHDP
Ga0126380_114826961	3300010043	Tropical Forest Soil	LLIRRQTGLSRGVKDILVTGITVTSLLTSAATASAQNFFEALFGRPGFAPGPVPDANFTSRDRRELANPPYRQAWIAPAYRRQV
Ga0126384_105186931	3300010046	Tropical Forest Soil	LLIRRQTRLSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLAPAHGPVPDANFTVRDRRELANPPYRQAWIAPAYRRQV
Ga0126382_116819541	3300010047	Tropical Forest Soil	MVRLGIVGARRGTLLLIRRQTRLSRGVKDMLVTGITVTTLLTSAATASAQNFFEALFGRPGFSPGPVPDANFTARDRRELANPPYRQAWIAPAYRRQ
Ga0126382_122800401	3300010047	Tropical Forest Soil	LIRRQTRLSRGVKNILVTGITATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQLANPPYRQAWIP
Ga0126370_102669242	3300010358	Tropical Forest Soil	LIRRQTRLSRGVKDILVTGITATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQLANPPYR
Ga0126376_105378561	3300010359	Tropical Forest Soil	LLIRRQSRSSRGVKDILVTGITVTMLLTSVATASAQNIFEALFGRVAPAPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVV
Ga0126378_127914831	3300010361	Tropical Forest Soil	LTRRQIRLRRGVKEILVTGITVTTLLTSVATASAQNIFQALFGGVGAPPPVPDANFTARDRQQLANPPYRQA
Ga0126379_114287252	3300010366	Tropical Forest Soil	LSIRRQTRLSRGVKDILVTGITVTTLLTSAATASAQNFFEALFGRMAPAPGPVPDAHFTARDRQELANPPYRQAYIAPEYRRQVVRYH
Ga0126379_126952482	3300010366	Tropical Forest Soil	MGANRGPFALLIRRQTRLSRGVKYILVTGITVTALLTSVATASAQNIFQALFGRLAPAPGPVPDANFTARDRRELAHPPYQQAWIAPAYRRQVVRY
Ga0126379_132152442	3300010366	Tropical Forest Soil	LFIRRQTGASRGVRFILVTGMTVTALLASVATGSAQNFFEALFGGLTRSPGPVPDASFTARDRQLLAYPPY
Ga0126381_1030666761	3300010376	Tropical Forest Soil	LLIRRQTRLSRGVKDILVTGITVTMLLTSAATASAQSIFEALFGRVAPSPGPVTDANFTVRDRRQLANPPYRQAWIPPAS
Ga0126381_1044098051	3300010376	Tropical Forest Soil	LLIRRQTRLSRGVKNILVTGITATTLLTSVASASAQNIFEALFGRMAPSPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQV
Ga0126383_108333142	3300010398	Tropical Forest Soil	LLIRRKTRLNRGVKDILVTGITVTMLLASGATASAQNIFEALFGRIAPSPGPVPDANFTARDRRELANPPYRQAWIAPAYRRQIVRYHRKEA
Ga0126383_112925412	3300010398	Tropical Forest Soil	LIRRQTRLSRGVKDILVTGITVTMLLTSAATASAQSIFEALFGRVAPSPGPVPDANFTARDRQQLANPPYRQA
Ga0126383_123271721	3300010398	Tropical Forest Soil	LLIRRQTRLSRGVRHILVTGITVTTLLTSVATASAQNIFEALFGRLASPPGPVPDANFTARDRQQLANPPYRQAWI
Ga0137383_106915421	3300012199	Vadose Zone Soil	LIRRQTRLSRGVKDILVTGITATTLLTSVASASAQNIFEALFGRLGSSPGPVPDANFTARDRQQLANPPYRQAWIP
Ga0137365_101464053	3300012201	Vadose Zone Soil	MVRLGIVGARVGGSFALLIRRQTRLSRGVKDILVTGITVTMLLTSAATASAQNIFEALFGRLGLPPGPVPDANFTARDRQQLANPPYRQAWIP
Ga0137363_100330771	3300012202	Vadose Zone Soil	LLIRRQTRLSRGVKDILVTGITVTTLLTSAATASAQNIFEALFGRLSPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVV
Ga0137363_106263901	3300012202	Vadose Zone Soil	LLIRRQTRLSRGVKESLVTGMTVTMLLTSVATASAQNIFEALFGRLAPSPGPVPDANFTARDRQQV
Ga0137374_101049372	3300012204	Vadose Zone Soil	LIRRQTRLSRGVKDILVTGITATTLLTSVASASAQNIFEALFGRLGSSPGPVPDANFTARDRQQ
Ga0137362_104747832	3300012205	Vadose Zone Soil	MVRLGIVGARVGGPFALLIRRQTRLSRGVKDILVTGITATTLLTSVASASAQNIFEALFGRLGSSPGPVPDANFTARDRQQLANPPYRQAWI
Ga0137381_107174861	3300012207	Vadose Zone Soil	LLIRRQTRLSRGVKDILVTGITVTTLFSSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPP
Ga0137378_113070861	3300012210	Vadose Zone Soil	LIRRQTRLSRGVKDVLVTGMMVTMLLTSAATASAQNIFEAMFGRLAAPPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVV
Ga0137372_102624591	3300012350	Vadose Zone Soil	MARLGIVGARVGGSFALLIRRQPRLSRGVKDILVTGITVTMLLTSAATASAQNIFEALFGRLGLPPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQ
Ga0137367_101671121	3300012353	Vadose Zone Soil	LLIRRQTRLSRGVKDILVTGITATTLLTSVASASAQNIFEALFGRLGSSPGPVPDANFTARDRQQLANPPYRQAWIPPA
Ga0137371_101821484	3300012356	Vadose Zone Soil	VRLGIVGARVGGSFALLIRRQSRLSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLGLSPGPVPDANFTARDRQQLANPPYRQAWIPPA
Ga0137384_113415532	3300012357	Vadose Zone Soil	LIRRQTRLSRGVKDVLVTGMTVTMLLTSAATASAQNIFEALFGRLALPPGPVPDANFTARDRQQLANP
Ga0137385_109213552	3300012359	Vadose Zone Soil	LIRRQTRLSRGVKDILVTGITATMLRTSVATASAQNIFEALVGRLAARPGPVPDAKFTARDRQKLANPP
Ga0137360_106773211	3300012361	Vadose Zone Soil	MVRLGIVGARVGGSFALLIRRQTRLSRGVKDILVTGITVTTLLTSAATASAQNIFEALFGGLSPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVVRYHRKEAP
Ga0137394_110595062	3300012922	Vadose Zone Soil	VRLGIVGARVGGPFALLIRRQTRLSRGVKDILVTGITVTMLLTSVATASAQNIFEALFGRLGLSPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQIVRYHRKEAP
Ga0126375_107191122	3300012948	Tropical Forest Soil	LIRRQTRLSRGVKDILVTGITVTMLLTSAATASAQSIFEALFGRVAPSPGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVVR
Ga0164303_105744932	3300012957	Soil	VRDSGELFDFLVRRQTRLSSGVKGILMTGITVTTLLTSVATASAQNIFEALFGQPSPVTVPDANFTARDRQQLANPPYQQAWIPPAYRRQIVQY
Ga0164303_112380181	3300012957	Soil	MAPGGSSVRDSGEFFALLVRRPTRLSRRVKGILVSGIMVTTLLTSVGTASAQNIFEALFGSLGFSPGPRPDAHFT
Ga0126369_108060982	3300012971	Tropical Forest Soil	LWIRRQTRLRRGVKDILVTGITVTTLLTSVATASAQNFFEALFGRMATPPGPVPDANFTARDRHELANPPYQQAWISPA
Ga0126369_113856861	3300012971	Tropical Forest Soil	MRLGESARAGRGPFALFIRRQTGLSRGVKNVLVTGMTVATLLTSVATVSAQNFFEALFGRLVPSPGPVPDANFTARDRQQLAYPP
Ga0134087_101417362	3300012977	Grasslands Soil	EDYLAMVRLGIVGARVGGSFALLIRLQTRLSRGVKDILVTGITVTMLLTSAATASAQNIEALFGRLGLPPGPVPDANFTARDRQQLANPPYRQA*
Ga0163163_122417951	3300014325	Switchgrass Rhizosphere	LSIRRQRGLRRGVKYMLVTGMTATTLLTSVATGSAQNFFEALFGRPKSAPRFVPNDPNFTARDRQELANAPYQQAHIPPAY
Ga0132258_109037941	3300015371	Arabidopsis Rhizosphere	LSIRRQTRLSRGVKDILVTSITVTTLLTSAATASAQNFFEALFGRLAPAPGPVPDAHFTARDRQELANPPYRQA
Ga0132257_1022472821	3300015373	Arabidopsis Rhizosphere	LSIRRQRGLRRGVKYMLVTGMTVTTLLTSVATGSAQNFFEALFGRPKPSPRFVPNDANFTARD
Ga0182041_105108911	3300016294	Soil	LLIRRQTRLSRGIKHILVTGVTVTTLLTSVATASAQNIFEALFGRLASPPGPVPDANFTARDRRELANPPYRQ
Ga0182033_106901212	3300016319	Soil	MVRLGIVGARFGGPFALLIRRQTRLSRGVKGILVTGITVTTLLTSVATASAQNIFEALFGRLGLSPGPVPDANFTARD
Ga0182033_114809091	3300016319	Soil	LLIRRQTRLSRGVKNILVTGITATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQ
Ga0182032_106469891	3300016357	Soil	LLIRRQTRLSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRMASPPGPVPDANFTARDRRELANPPYRQAWIAPAYRRQV
Ga0182032_117905041	3300016357	Soil	LLIRRQTGSSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLA
Ga0182039_118559261	3300016422	Soil	LLIRRQTRLSRGVKNILVTGITATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDR
Ga0182038_110135892	3300016445	Soil	LSRGVKYMFVTAITATTLLSSVASGSAQNFFEALFGRPRPPAPRIVPNDPNFTARDRQELANAPYQQAHIP
Ga0182038_119576302	3300016445	Soil	VRLGIVGARFGGPFALLIRRQTRLSRGVKGFLVTGITVTMLLTSVATTSAQNIFEALFGRLASAPGPVPDANFTARDRRELANPPYRQAWIAPAYRR
Ga0190272_119601411	3300018429	Soil	VVRLGGSSVRDSGEPFAFLARAQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEALFGQPSPVTVTDANFTARDRQQLANPPYQQAWIPPAYRRQIVQYHRKEA
Ga0066667_115451601	3300018433	Grasslands Soil	MVRLGIVGARVGGSFALLIRRQTRLSRGVKDILVTGITVTMLLTSAATASAQNIFEALFGRLGLPPGPVPDANFTARDRQQLANPPYRQAWIPP
Ga0190271_111270252	3300018481	Soil	MRVVRLGGSLVRDSGEPFAFLARRQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEALFGQPSPVTVPDANFTARDRQ
Ga0193701_11077201	3300019875	Soil	VRDSGEPFAFLVRRQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEAMFGRPWSPPVTVPDANFTARDRQQLANPPYQQAWIPPAYRR
Ga0193727_11679611	3300019886	Soil	VRDSGEPFAFLVRRQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEAMFGRPWSPPVTVPDANFTARDRQQLANPPYQQAWIPPAYRRQIIQ
Ga0210406_104265431	3300021168	Soil	MLLRNSAPGDRRRASRGTFALWIRRQTRLRRGVKDILVTGITVTTLLTSVATASAQNFFEALFGRMATPPGPVPDANFTARDRHELANPPYRQAWISPAYRRQVV
Ga0210406_107903191	3300021168	Soil	VRLGIVGARVGGPYALLIRRQTRLSRGVRDILVTGITVTTLLTSVATASAQNIFEALFGRGPAPAPVPDANFTARDRQQLANPPYRQ
Ga0210392_113561651	3300021475	Soil	LLIRRQTRLSRGVKGMLVTGITATTLLTSVATASAQNFFEALFGRMGAPPGPVPDANFTVRDRQQLA
Ga0126371_111479021	3300021560	Tropical Forest Soil	LLIRRQTRLSRGVKDILVTGITATMLLTSVASASAQNIFEALFGRLGSSPGPVPDANFTARDRQQLANPPYRQAWIPPAYRR
Ga0207642_107934181	3300025899	Miscanthus Rhizosphere	VRDSGEPFAFLVRCQTRLSSGVKGILMTSITVTTLLTSVATASAQNIFQALFGGLGAPPPPVPDANFTARDRQQLANPPYRQAWIAPAYR
Ga0207693_1000458930	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VRDSGEFFALLVRRPTRLSRRVKGILVSGIMVTTLLTSVGTASAQNIFEALFGSLGFSPGPVPDAHFTARDRRELANPPY
Ga0207651_120297231	3300025960	Switchgrass Rhizosphere	VRDSGELFDFLVRRQTRLSSGVKGILMTGITVTTLLTSVATVSAQNIFEALFGRPWSSPVTVPDANFTVRDRQQLA
Ga0207683_102700282	3300026121	Miscanthus Rhizosphere	VRDSGELFDFLVRRQTRLSRGAKGMLVIGITVTTLVTSIAAASAQNIFEALFGRPWSSPVTVPDANFTARDRQQLANPPYQQA
Ga0209350_10661903	3300026277	Grasslands Soil	MVRLGIVGARVGGPFALLTRRQTRLSRGVKDILVTGITVTMLLTSVATASAQNIFEALFGRLSPGPVPDANFTARDRQQLASPPYRQAWIPP
Ga0209265_12421871	3300026308	Soil	LLIRRQIRLRRGVKEILVAGITVATLLTCVATASAQNIFQALFGGLGAPPPPVPDANFTARDRQQLANPPYRQAWIAPAYRR
Ga0209267_13126292	3300026331	Soil	LLIRRQTRLSRGVKDILVTGITVTTLFSSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPYQQAW
Ga0209577_107185691	3300026552	Soil	MVRLGSSARVSGTFALLIRRQTRLSRGVKDILVTGMTVTMLLTSVATASAQNIFEALFGRLAAPTGPVPDANFTARDRQQLANPPYRQALIPPAYRRQVVRY
Ga0307291_11705611	3300028707	Soil	MRVVRLGGSSVRDSGEPFAFLVRRQTRLSRGVRGILMTGITVTTLLTSVATASAQNIFEAMFGRPWSPPVTVPDANFTARDRQQLANPPYQQAWIPPAYRRQIVQYQRKEAPGSILVDT
Ga0307315_102907501	3300028721	Soil	VRDSGEPFAFLVRRQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEAMFGRPWSPPVTVPDANFTARDRQQLANPPYQQAWIPPAYRRQIIQYHRK
Ga0307318_102809241	3300028744	Soil	VRDSGEPFAFLVRRQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEAMFGRPWSPPVTVPDANFT
Ga0307316_103204741	3300028755	Soil	VRDSGEPFAFLARAQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEALFGQPSPVTVPDANFTARDRQQLANPPYQQAWI
Ga0318555_100750832	3300031640	Soil	MVRLGIVGARFGGPFALLIRRQTRLSRGVKGILVTGITVTTLLTSVATASAQNIFEALFGRLGLSPGPVPDANFTARDRQQLANPPYQQAWIPPAYRRQIVDYHRN
Ga0318574_100402844	3300031680	Soil	LRDGAPGDHRRASRGPFALLIRRQTRLSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLASPPGPMPDANFTARD
Ga0318560_100685761	3300031682	Soil	LRELRLGDYGRASRGPIALLIRRQTRLSRGVKHILVTGVTVTTLLTSVATASAQNIFEALFGRLASPPGPVPDANFTARDRRELANPPYRQAWI
Ga0318496_104114871	3300031713	Soil	LLIRRQTRLSRGVKHILVTGITVMTLLTSVATASAQNIFQALFGRLAPAPGPVPDANFT
Ga0306918_100301105	3300031744	Soil	LLIRRQTRLSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLASPPGPMPDANFTARDRRELAHPPYQQAWI
Ga0318526_101007061	3300031769	Soil	LLIRRQTRLSRGVKDILVTGVTATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQV
Ga0318543_100744141	3300031777	Soil	VRLGIVGARFGGPFALLIRRQTRLSRGVKGILVTGITVTTLLTSVATASAQNIFEALFGRLGLSPGPVPDANFTARDRQQLANPP
Ga0318547_101492332	3300031781	Soil	MVRLGIVGARFGGPFALLIRRQTRLSRGVKGILVTGITVTTLLTSVATASAQNIFEALFGRLGLSPGPVPDANFTARDRQQLANPPYQQAWIPPAYRRQIVDYHR
Ga0318523_106156791	3300031798	Soil	LLIRRQTRLSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRMASPPGPVPDANFTARDRRELANPPYRQAWIA
Ga0318564_100300463	3300031831	Soil	LIRRQTRLSRGVKDILVTGVTATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQLANPP
Ga0310917_105710311	3300031833	Soil	LIIRRHTGLSRGVKSMLVTGVTVTTLLTAAATASAQNFFEALFGRLVPSPGPVPDANFTARDRQLLA
Ga0318512_105721961	3300031846	Soil	LLIRRQTRLSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRMASPPGPVPDANFTARDRRELANPPYRQAWIAPAYRRQVVRYH
Ga0310904_101699942	3300031854	Soil	VVRLGGSSVRDSGEPFAFLARAQTRLSRGVKGILMTGITVTTLLTSVATASAQNIFEALFGQPSPVTVPDANFTARDRQQLANPPYQQAWIPPAYRR
Ga0306923_103787532	3300031910	Soil	VRLGIVSARVGGPFALLIRRQTRLSRGVKNILVTGITATTLLTSVASASAQNIFEALFGRMAPSASPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVV
Ga0310913_107883891	3300031945	Soil	VRLGIVSARVGGPFALLIRRQTRLSRGVKDILVTGITVTTLLTSVATASAQNIFEALFGRLAPAPGPVPDANFMARDRQQLAHPPYQQAWIPPAYRRQVVRYHRQEAP
Ga0310913_109669482	3300031945	Soil	LLIRRQTRLSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRMASPPGPVPDANFTARDRRELANPPYRQAWIAPAYRRQ
Ga0318559_105460602	3300032039	Soil	LLIRRQTRLSRGVKHILVTGITVMTLLTSVATASAQNIFQALFGRLAPAPGPVPDANFTARDRRELAHPPYQQAW
Ga0318558_104897461	3300032044	Soil	VRLGIVGARVGGPFALLIRRQTRLSRGVKDILVTGITATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQLANPPYRQAWIPPAYRRQVVRYH
Ga0318533_110872492	3300032059	Soil	LLIRRQTRSSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRRELAHPPYQQAYIA
Ga0318514_100809023	3300032066	Soil	LIRRQTRLSRGVKDILVTGVTATTLLTSVASASAQNIFEALFGRMAPSAGPVPDANFTARDRQQ
Ga0318525_106340711	3300032089	Soil	LLIRRQTRLSRGVKHILVTGITVTTLLTSVATASAQNIFEALFGRLAPAPGPVPDANFTARDRQQLAHPPYQQAWI
Ga0310914_111301191	3300033289	Soil	LLIRRQSGLSRGVKYMLVTGVTVTTLLTAAATASAQNFFEALFGRLVPSPGPVPDANFTARDRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084196

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences