Metagenome / Metatranscriptome Family F084372

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084372
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	75 residues
Representative Sequence	MKMRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAEVEQEAPPEPGIGGLEPTFA
Number of Associated Samples	89
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.14 %
% of genes near scaffold ends (potentially truncated)	29.46 %
% of genes from short scaffolds (< 2000 bps)	77.68 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.786 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (40.179 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.107 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 48.68% Coil/Unstructured: 51.32%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01066	CDP-OH_P_transf	39.29
PF02771	Acyl-CoA_dh_N	18.75
PF00871	Acetate_kinase	7.14
PF01593	Amino_oxidase	1.79
PF09363	XFP_C	1.79
PF09364	XFP_N	0.89
PF00590	TP_methylase	0.89
PF01325	Fe_dep_repress	0.89
PF02615	Ldh_2	0.89
PF03600	CitMHS	0.89
PF02770	Acyl-CoA_dh_M	0.89
PF00296	Bac_luciferase	0.89
PF08450	SGL	0.89
PF01323	DSBA	0.89
PF03705	CheR_N	0.89
PF14824	Sirohm_synth_M	0.89
PF01814	Hemerythrin	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	39.29
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	39.29
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	39.29
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	19.64
COG0282	Acetate kinase	Energy production and conversion [C]	7.14
COG3426	Butyrate kinase	Energy production and conversion [C]	7.14
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.79
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.89
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.89
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.89
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.79 %
Unclassified	root	N/A	48.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.79 %
Unclassified	root	N/A	48.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.79 %
Unclassified	root	N/A	48.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.57 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	5.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	16.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	5.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	15.18 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	5.36 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	3.57 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.79 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.57 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	1.79 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.57 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	1.79 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.57 %
Burkholderia pseudomallei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei	1.79 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3.57 %
Burkholderia pseudomallei 1710b	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	1.79 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.79 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16751685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1157	Open in IMG/M
2140918007\|ConsensusfromContig165075	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
2199352025\|deepsgr__Contig_37202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1326	Open in IMG/M
3300003994\|Ga0055435_10035507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1144	Open in IMG/M
3300004009\|Ga0055437_10318265	Not Available	520	Open in IMG/M
3300004268\|Ga0066398_10008647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1423	Open in IMG/M
3300004268\|Ga0066398_10076250	Not Available	735	Open in IMG/M
3300004479\|Ga0062595_100171027	All Organisms → cellular organisms → Bacteria → Proteobacteria	1299	Open in IMG/M
3300004479\|Ga0062595_102076413	Not Available	552	Open in IMG/M
3300004633\|Ga0066395_10195124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1056	Open in IMG/M
3300005166\|Ga0066674_10225739	Not Available	891	Open in IMG/M
3300005332\|Ga0066388_100021798	All Organisms → cellular organisms → Bacteria → Proteobacteria	5654	Open in IMG/M
3300005363\|Ga0008090_15728255	All Organisms → cellular organisms → Bacteria	2102	Open in IMG/M
3300005406\|Ga0070703_10156702	Not Available	860	Open in IMG/M
3300005439\|Ga0070711_100078267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2349	Open in IMG/M
3300005440\|Ga0070705_100805096	Not Available	748	Open in IMG/M
3300005445\|Ga0070708_101234667	Not Available	699	Open in IMG/M
3300005450\|Ga0066682_10716859	Not Available	613	Open in IMG/M
3300005546\|Ga0070696_100293985	Not Available	1242	Open in IMG/M
3300005556\|Ga0066707_10475288	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300005617\|Ga0068859_101788075	Not Available	679	Open in IMG/M
3300005713\|Ga0066905_100003505	All Organisms → cellular organisms → Bacteria → Proteobacteria	6195	Open in IMG/M
3300005713\|Ga0066905_100011756	All Organisms → cellular organisms → Bacteria → Proteobacteria	4215	Open in IMG/M
3300005713\|Ga0066905_101166528	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	687	Open in IMG/M
3300005764\|Ga0066903_100020908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6969	Open in IMG/M
3300005764\|Ga0066903_106943438	Not Available	587	Open in IMG/M
3300005983\|Ga0081540_1005929	All Organisms → cellular organisms → Bacteria	9021	Open in IMG/M
3300006237\|Ga0097621_101237580	Not Available	704	Open in IMG/M
3300006796\|Ga0066665_10148866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1774	Open in IMG/M
3300006852\|Ga0075433_10103003	All Organisms → cellular organisms → Bacteria	2528	Open in IMG/M
3300006871\|Ga0075434_100334783	All Organisms → cellular organisms → Bacteria → Proteobacteria	1534	Open in IMG/M
3300007255\|Ga0099791_10279829	Not Available	794	Open in IMG/M
3300009090\|Ga0099827_10552429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	991	Open in IMG/M
3300009147\|Ga0114129_11247654	Not Available	924	Open in IMG/M
3300009162\|Ga0075423_13038715	Not Available	514	Open in IMG/M
3300009792\|Ga0126374_10008069	All Organisms → cellular organisms → Bacteria	3950	Open in IMG/M
3300009792\|Ga0126374_10516897	Not Available	864	Open in IMG/M
3300009792\|Ga0126374_11096187	Not Available	631	Open in IMG/M
3300010043\|Ga0126380_10135626	Not Available	1549	Open in IMG/M
3300010046\|Ga0126384_10005242	All Organisms → cellular organisms → Bacteria	7918	Open in IMG/M
3300010046\|Ga0126384_10020089	All Organisms → cellular organisms → Bacteria	4304	Open in IMG/M
3300010046\|Ga0126384_10357048	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300010046\|Ga0126384_10505582	Not Available	1042	Open in IMG/M
3300010046\|Ga0126384_10509084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1039	Open in IMG/M
3300010047\|Ga0126382_11210649	Not Available	677	Open in IMG/M
3300010048\|Ga0126373_10382637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1428	Open in IMG/M
3300010336\|Ga0134071_10082074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1510	Open in IMG/M
3300010358\|Ga0126370_10111403	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300010358\|Ga0126370_11456003	Not Available	649	Open in IMG/M
3300010359\|Ga0126376_12056061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	614	Open in IMG/M
3300010359\|Ga0126376_12345844	Not Available	580	Open in IMG/M
3300010360\|Ga0126372_11142716	Not Available	800	Open in IMG/M
3300010360\|Ga0126372_12758644	Not Available	543	Open in IMG/M
3300010360\|Ga0126372_12954510	Not Available	527	Open in IMG/M
3300010362\|Ga0126377_10431742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1336	Open in IMG/M
3300010362\|Ga0126377_10817256	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	991	Open in IMG/M
3300010366\|Ga0126379_10201327	All Organisms → cellular organisms → Bacteria	1915	Open in IMG/M
3300010398\|Ga0126383_12034639	Not Available	662	Open in IMG/M
3300011270\|Ga0137391_10199429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia pseudomallei → Burkholderia pseudomallei 1710b	1741	Open in IMG/M
3300012199\|Ga0137383_10173883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1578	Open in IMG/M
3300012201\|Ga0137365_10220570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1415	Open in IMG/M
3300012202\|Ga0137363_11331628	Not Available	607	Open in IMG/M
3300012203\|Ga0137399_10356016	Not Available	1216	Open in IMG/M
3300012532\|Ga0137373_10433767	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300012927\|Ga0137416_10710717	Not Available	883	Open in IMG/M
3300012929\|Ga0137404_12178902	Not Available	518	Open in IMG/M
3300012930\|Ga0137407_10005360	All Organisms → cellular organisms → Bacteria	8665	Open in IMG/M
3300012931\|Ga0153915_12291267	Not Available	632	Open in IMG/M
3300012948\|Ga0126375_10022724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2960	Open in IMG/M
3300012948\|Ga0126375_11663024	Not Available	552	Open in IMG/M
3300012948\|Ga0126375_11867895	Not Available	526	Open in IMG/M
3300012948\|Ga0126375_11934928	Not Available	519	Open in IMG/M
3300014262\|Ga0075301_1022308	Not Available	1076	Open in IMG/M
3300014883\|Ga0180086_1063864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	900	Open in IMG/M
3300014884\|Ga0180104_1004360	All Organisms → cellular organisms → Bacteria	3042	Open in IMG/M
3300014884\|Ga0180104_1072500	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	950	Open in IMG/M
3300014885\|Ga0180063_1213889	Not Available	619	Open in IMG/M
3300015245\|Ga0137409_11444580	Not Available	534	Open in IMG/M
3300015374\|Ga0132255_100048340	All Organisms → cellular organisms → Bacteria	5525	Open in IMG/M
3300019789\|Ga0137408_1170288	All Organisms → cellular organisms → Bacteria → Proteobacteria	4673	Open in IMG/M
3300020170\|Ga0179594_10050703	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300021560\|Ga0126371_10547883	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300021560\|Ga0126371_13942678	Not Available	500	Open in IMG/M
3300025569\|Ga0210073_1010988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1743	Open in IMG/M
3300025885\|Ga0207653_10315166	Not Available	608	Open in IMG/M
3300025898\|Ga0207692_10590035	Not Available	713	Open in IMG/M
3300025899\|Ga0207642_10182712	All Organisms → cellular organisms → Bacteria → Proteobacteria	1144	Open in IMG/M
3300025938\|Ga0207704_11383663	Not Available	603	Open in IMG/M
3300027527\|Ga0209684_1001446	All Organisms → cellular organisms → Bacteria	4211	Open in IMG/M
3300027646\|Ga0209466_1001789	All Organisms → cellular organisms → Bacteria → Proteobacteria	4361	Open in IMG/M
3300027646\|Ga0209466_1024186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1257	Open in IMG/M
3300027646\|Ga0209466_1056514	Not Available	792	Open in IMG/M
3300027678\|Ga0209011_1178793	Not Available	587	Open in IMG/M
3300028047\|Ga0209526_10016564	All Organisms → cellular organisms → Bacteria	5112	Open in IMG/M
3300028536\|Ga0137415_10583468	Not Available	928	Open in IMG/M
3300031231\|Ga0170824_115280462	Not Available	1387	Open in IMG/M
3300031446\|Ga0170820_12242802	Not Available	1077	Open in IMG/M
3300031469\|Ga0170819_11708581	Not Available	979	Open in IMG/M
3300031544\|Ga0318534_10063138	All Organisms → cellular organisms → Bacteria → Proteobacteria	2088	Open in IMG/M
3300031564\|Ga0318573_10672196	Not Available	557	Open in IMG/M
3300031640\|Ga0318555_10022261	All Organisms → cellular organisms → Bacteria	2994	Open in IMG/M
3300031740\|Ga0307468_100653634	Not Available	869	Open in IMG/M
3300031782\|Ga0318552_10457852	Not Available	651	Open in IMG/M
3300031954\|Ga0306926_11488381	Not Available	782	Open in IMG/M
3300031965\|Ga0326597_10000388	All Organisms → cellular organisms → Bacteria	79818	Open in IMG/M
3300031981\|Ga0318531_10061166	Not Available	1615	Open in IMG/M
3300032059\|Ga0318533_11122886	Not Available	576	Open in IMG/M
3300032174\|Ga0307470_10084752	Not Available	1762	Open in IMG/M
3300032829\|Ga0335070_10009092	All Organisms → cellular organisms → Bacteria → Proteobacteria	11673	Open in IMG/M
3300032893\|Ga0335069_10015572	All Organisms → cellular organisms → Bacteria	10630	Open in IMG/M
3300033289\|Ga0310914_10174157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1911	Open in IMG/M
3300033433\|Ga0326726_10006454	All Organisms → cellular organisms → Bacteria	10560	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.07%
Host-Associated	Host-Associated	8.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.93%
Plants	Host-Associated → Plants	8.93%
Aquatic	Environmental → Aquatic	7.14%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.46%
Sediment	Environmental → Aquatic → Sediment	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.57%
Marine	Environmental → Aquatic → Marine	2.68%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Peat	Environmental → Terrestrial → Peat	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.71%
Loam	Environmental → Terrestrial → Soil → Loam	19.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.57%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.57%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.07%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	25.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.46%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.57%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2140918007	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active_all	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014262	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1	Environmental	Open in IMG/M
3300014883	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT760_16_10D	Environmental	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02502460	2088090014	Soil	MKMRVQRDDGEFETIELPQDAWRVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPQPGIGGLEPTFA
A_all_C_02523340	2140918007	Soil	MKIRVQREDGKLETIQLPQDAWQVLRLGSINSLVSEERTHSFDEEGYYLHTQPVAAGDEEDAPPETGMGGLEPTFA
deepsgr_00270370	2199352025	Soil	MKMRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0055435_100355072	3300003994	Natural And Restored Wetlands	MKIRVQRDDRKFETIELSQDAWQVLRLGAINTLVSSDRTHSFDEEGYYLHTQPVAADVDEDAPPETGIGGLEPTFA*
Ga0055437_103182651	3300004009	Natural And Restored Wetlands	MKIRVQRDDGKLETIALSQDAWQVLRLGAINTLVSSERTHSFDEEGYYLHTQSVAADVDEDAPPETGIGGLEPTFA*
Ga0066398_100086472	3300004268	Tropical Forest Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA*
Ga0066398_100762501	3300004268	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTEQTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA*
Ga0062595_1001710272	3300004479	Soil	MKMRVQRDDGEFETIELPQDAWRVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0062595_1020764132	3300004479	Soil	MKMRVQRDDGEFETIELPQDAWQVLRLGSINTLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0066395_101951242	3300004633	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA*
Ga0066674_102257392	3300005166	Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPAPGIGGLEPTFA*
Ga0066388_1000217982	3300005332	Tropical Forest Soil	MNIRVQRADGSFECIELRQDAWQVLRLGAINSLVSGDRTHSFDEDGYYLPTEAVSAEGDREAPPDRGTDGLEPSFA*
Ga0008090_157282553	3300005363	Tropical Rainforest Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPAFA*
Ga0070703_101567022	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0070711_1000782672	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKMRVQRDDGEFETIELPQDAWQVLRLGSINTLVSTERTHSFDEDGYYLHTQPVAAEVEQEAPPEPGIGGLEPTFA*
Ga0070705_1008050961	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAEVEQEAPPEPGIGGLEPTFA*
Ga0070708_1012346671	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKMRVQRDDGEFETIELPQDAWRVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPQPGIGGLEPTFA*
Ga0066682_107168591	3300005450	Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPP
Ga0070696_1002939851	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	QRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0066707_104752882	3300005556	Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPAPGIG
Ga0068859_1017880752	3300005617	Switchgrass Rhizosphere	DGEFETIELPQDAWQVLRLGSINTLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0066905_1000035055	3300005713	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPQKDAPREPGMGGLEPTFA*
Ga0066905_1000117563	3300005713	Tropical Forest Soil	MKMRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTADAEENAPREPGLGGLEPTFA*
Ga0066905_1011665282	3300005713	Tropical Forest Soil	MKMRVQRDDGEFETIELAQDAWQVLRLGSINSLVSTERTYSFDMNGYYLHTQPVAAETEEDAPREP
Ga0066903_1000209086	3300005764	Tropical Forest Soil	MNIRVQRADGSFECIELRQDAWQVLRLGAINSLVSGDRTHSFDEDGYYLPTEAVSAEGDREAPPDRGTGGLEPSFA*
Ga0066903_1069434381	3300005764	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGMGGLEPTFA*
Ga0081540_10059293	3300005983	Tabebuia Heterophylla Rhizosphere	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAETEENAPREPGLGGLEPTFA*
Ga0097621_1012375802	3300006237	Miscanthus Rhizosphere	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFVEDGYYLHTQPVAADVEQEAP
Ga0066665_101488662	3300006796	Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPAPGLGGLEPTFA*
Ga0075433_101030032	3300006852	Populus Rhizosphere	MKMRVQRDDGEFETIELAQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAEAEEDAPRKPGLGGLEPTFA*
Ga0075434_1003347832	3300006871	Populus Rhizosphere	MKMRVQRDDGEFETIELPQDAWRVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPKPGIGGLEPTFA*
Ga0099791_102798292	3300007255	Vadose Zone Soil	AGSGRGDSIMKIRVQRDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGGLEPTFA*
Ga0099827_105524291	3300009090	Vadose Zone Soil	MKIRVQRDDGAFETIELPQDAWQVLRLGSVNSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGGLEPTFA*
Ga0114129_112476541	3300009147	Populus Rhizosphere	MTMKMRVQRDDGEFETIELAQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAEAEEDAPRKPGLGGLEPTFA*
Ga0075423_130387151	3300009162	Populus Rhizosphere	MHATTTSSGSRRGDEIMKMRVQRDDGEFETIELPQDAWRVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPQPGIGGLEPTFA*
Ga0126374_100080695	3300009792	Tropical Forest Soil	MNIRVQRADGSFECIELRQDAWQVLRLGTINSLVSGDRTHSFDEDGYYLPTEAVSAEGDREAPPDRGTDGLEPSFA*
Ga0126374_105168972	3300009792	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA*
Ga0126374_110961871	3300009792	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEEDAPREPGMGGLEPTFA*
Ga0126380_101356262	3300010043	Tropical Forest Soil	MNIRVQRADGSFECIELRQDAWQVLRLGAINSLVSGDRTHSFDEDGYYLPTEAVSAEGDREAPPDQGADGLEPSFA*
Ga0126384_100052424	3300010046	Tropical Forest Soil	MKMRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTAEAEENAPREPGLGGLEPTFA*
Ga0126384_100200895	3300010046	Tropical Forest Soil	MNIRVQRADGSFECIELRQDAWQVLRLGTINSLVSGDRTHSFDEDGYYLPTEAVRAEGDREAPPDRGADGLEPSFA*
Ga0126384_103570483	3300010046	Tropical Forest Soil	MKIRVQRADGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA*
Ga0126384_105055822	3300010046	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPQKDAPREPGMGGLEPTFA*
Ga0126384_105090842	3300010046	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTEQTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA*
Ga0126382_112106492	3300010047	Tropical Forest Soil	MNIRVQRADGSFECIELRQDAWQVLRLGSINSLVSGERTHSFDEDGYYLPTEAVSAEGDREAPPDQGADGLEPSFA*
Ga0126373_103826371	3300010048	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEEDAPREPGLGGLEPTFA*
Ga0134071_100820741	3300010336	Grasslands Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAHVEQEAPPPPGIGGLEPTFA*
Ga0126370_101114033	3300010358	Tropical Forest Soil	DDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA*
Ga0126370_114560032	3300010358	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEEDAPREPGMGGLEPTFA*
Ga0126376_120560611	3300010359	Tropical Forest Soil	MNIRVQRMDGSFECIELRQDAWQVLRLGTINSLVSGDRTHSFDEDGYYLPTEAVRAEGDREAPPDRGTDGLEPSFA*
Ga0126376_123458443	3300010359	Tropical Forest Soil	RDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGMGGLEPTFA*
Ga0126372_111427162	3300010360	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINTLVSTEQTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA*
Ga0126372_127586441	3300010360	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSAERTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPT
Ga0126372_129545101	3300010360	Tropical Forest Soil	DGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEEDAPREPGMGGLEPTFA*
Ga0126377_104317422	3300010362	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGMGGLEPTFA*
Ga0126377_108172561	3300010362	Tropical Forest Soil	MDGSFECIELRQDAWQVLRLGSINSLVSGERTHSFDEDGYYLPTEAVSAEGDREAPPDQGAD
Ga0126379_102013273	3300010366	Tropical Forest Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLVPTFA*
Ga0126383_120346391	3300010398	Tropical Forest Soil	MKIRVQRADGELETIDLSQDAWQVLRLGSINSLVSRERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA*
Ga0137391_101994292	3300011270	Vadose Zone Soil	MKIRVQRDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGGLEPTFA*
Ga0137383_101738832	3300012199	Vadose Zone Soil	MKIRVQRDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0137365_102205702	3300012201	Vadose Zone Soil	MKIRVQRDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIDGLEPTFA*
Ga0137363_113316281	3300012202	Vadose Zone Soil	RGDEIMKMRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0137399_103560162	3300012203	Vadose Zone Soil	MNIRVQREDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEEGYYLHTQPVAAGVEEEAPPETGIGGLEPTFA*
Ga0137373_104337671	3300012532	Vadose Zone Soil	RDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0137416_107107171	3300012927	Vadose Zone Soil	PSPPPRADPEKEGGTMNIRVQREDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEEGYYLHTQPVAAGVEEEAPPETGIGGLEPTFA*
Ga0137404_121789021	3300012929	Vadose Zone Soil	MKIRVQRDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGG
Ga0137407_100053608	3300012930	Vadose Zone Soil	MKIRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGGLEPTFA*
Ga0153915_122912671	3300012931	Freshwater Wetlands	MKVRVQREDGTFETIELSQDAWQVLRLRSVNSLVSSERTHSFDEAGYYLHTQPVRAGVGEEAPPESG
Ga0126375_100227242	3300012948	Tropical Forest Soil	MTMKMRVQRDDGEFETIDLPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAEAEEDAPREPGLGGLEPTFA*
Ga0126375_116630241	3300012948	Tropical Forest Soil	QGGMTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTEQTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA*
Ga0126375_118678951	3300012948	Tropical Forest Soil	DGSFECIELRQDAWQVLRLGSINSLVSGERTHSFDEDGYYLPTEAVSAEGDREAPPDQGADGLEPSFA*
Ga0126375_119349281	3300012948	Tropical Forest Soil	MTMKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSAERTHSFDEDGYYLHTQAVAAEPEKEAPREPGL
Ga0075301_10223082	3300014262	Natural And Restored Wetlands	MKIRVQRDDRKFETIELSQDAWQVLRLGAINTLVSSERTHSFDEEGYYLHTQPVAADVDEDAPPETGIGGLEPTFA*
Ga0180086_10638642	3300014883	Soil	MNIRVQREDGTLETIELLHDAWQVLRLGGINTLVSAERTHSFDEEGYYLHTQPVEAGAEKEAPPETGIGGLEPTFA*
Ga0180104_10043602	3300014884	Soil	MKVRVQREDGTFETIELSQDAWQVLRLGSINSLVSAEMTHSFDEKGYYIHTQPAGAGIEEEAPLAPGMGGLAPTLA*
Ga0180104_10725001	3300014884	Soil	GRTMNIRVQREDGTLETIELLHDAWQVLRLGGINTLVSAERTHSFDEEGYYLHTEPVAAGAEKEAPPETGIGGLEPSFA*
Ga0180063_12138892	3300014885	Soil	MKVRVQREDGTFETIELSQDAWQVLRLGSINSLVSAEMTHSFDEKGYYIHTQPVGAGVEEEAPLAPGMGGLAPTLA*
Ga0137409_114445801	3300015245	Vadose Zone Soil	MKMRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0132255_1000483407	3300015374	Arabidopsis Rhizosphere	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTQRTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA*
Ga0137408_11702884	3300019789	Vadose Zone Soil	MKIRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGGLEPTFA
Ga0179594_100507031	3300020170	Vadose Zone Soil	MKIRVQRDDGAFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGLGGLEPTFA
Ga0126371_105478831	3300021560	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTEQTHSFDEDGYYLHTQAVAVEPEKDAPREPGLGGLEPTFA
Ga0126371_139426781	3300021560	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGMGGLEPTFA
Ga0210073_10109883	3300025569	Natural And Restored Wetlands	MKIRVQRDDGKLETIALSQDAWQVLRLGAINTLVSSERTHSFDEEGYYLHTQSVAADVDEDAPPETGIGGLEPTFA
Ga0207653_103151661	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0207692_105900351	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0207642_101827122	3300025899	Miscanthus Rhizosphere	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLERTFA
Ga0207704_113836632	3300025938	Miscanthus Rhizosphere	IELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0209684_10014463	3300027527	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPEKDAPREPGLGGLEPTFA
Ga0209466_10017893	3300027646	Tropical Forest Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQAVAAEPQKDAPREPGMGGLEPTFA
Ga0209466_10241862	3300027646	Tropical Forest Soil	MKMRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTADAEENAPREPGLGGLEPTFA
Ga0209466_10565142	3300027646	Tropical Forest Soil	ETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA
Ga0209011_11787931	3300027678	Forest Soil	MNIRVQREDGTPETIELSQDAWQVLRLGGINSLVSAEGTHSFDEEGYYLHTQPVEVGDEKEAPPETGI
Ga0209526_100165643	3300028047	Forest Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDDEGYYLHTQPVAAGVKEEAPPETGIGGLEPTFA
Ga0137415_105834681	3300028536	Vadose Zone Soil	MNIRVQREDGKFETIELPQDAWQVLRLGSINSLVSTERTHSFDEEGYYLHTQPVAAGVEEEAPPETGIGGLEPTFA
Ga0170824_1152804621	3300031231	Forest Soil	MKMRVQRDDGEFETIELRQDAWQVLRLGSINTLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0170820_122428022	3300031446	Forest Soil	MKMRVQRDDGEFETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAAEVEQEAPPEPGIGGLEPTFA
Ga0170819_117085811	3300031469	Forest Soil	MKMRVQRDDGEFETIELPQDAWQVLRLGSINTLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0318534_100631381	3300031544	Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDA
Ga0318573_106721962	3300031564	Soil	IDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA
Ga0318555_100222611	3300031640	Soil	RVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA
Ga0307468_1006536342	3300031740	Hardwood Forest Soil	MKMRVQRDDGKFETIELPQDAWQVLRLGSINSLVSRERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0318552_104578521	3300031782	Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTIA
Ga0306926_114883811	3300031954	Soil	MKMRVQRDDGQFETIELPQDAWQVLRLGSINSLVSTEQTHSFDEDGYYLHTQAVAAEPERDAPREPGLGGLEPTFA
Ga0326597_1000038857	3300031965	Soil	MKARVQREDGTLETIELPQDAWQVLRLGSINCLVSAERTHSFDEEGYYLRTQPVGAGVKEAAPPEPGMGGMEPTLA
Ga0318531_100611662	3300031981	Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEP
Ga0318533_111228862	3300032059	Soil	LETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTEAEEDAPREPGLGGLEPTFA
Ga0307470_100847521	3300032174	Hardwood Forest Soil	FETIELPQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVAADVEQEAPPEPGIGGLEPTFA
Ga0335070_100090925	3300032829	Soil	MKIRVQRDDGIFETIELSQDAWQVLRLGTINTLVSSERTHSFDEDGYYLHTQPVAADVDEDAPPEPGIGGLEPTFA
Ga0335069_100155723	3300032893	Soil	MKIRVQRDDGIFETIELSQDAWQVLRLGTINTLVSSERTHSFDEDGYYLHTQPVAADVDEDAPLEPGIGGLEPTFA
Ga0310914_101741572	3300033289	Soil	MKIRVQRDDGELETIDLSQDAWQVLRLGSINSLVSTERTHSFDEDGYYLHTQPVTTGAEEDAPREPGLGGLEPTFA
Ga0326726_100064548	3300033433	Peat Soil	MKIRVQRDDGVFETIELSQDAWQVLRLGTINTLVSSERTHSFDEDGYYLHTQPVAADVDEDAPPEPGIGGLEPTFA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084372

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences