Metagenome / Metatranscriptome Family F084428

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084428
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	116 residues
Representative Sequence	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVKEKVARKRN
Number of Associated Samples	101
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.21 %
% of genes near scaffold ends (potentially truncated)	22.32 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (70.536 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (41.964 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.821 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.86% β-sheet: 23.65% Coil/Unstructured: 61.49%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00582	Usp	1.79
PF12651	RHH_3	1.79
PF14534	DUF4440	1.79
PF08241	Methyltransf_11	1.79
PF03592	Terminase_2	1.79
PF01425	Amidase	1.79
PF04536	TPM_phosphatase	0.89
PF00196	GerE	0.89
PF08281	Sigma70_r4_2	0.89
PF01569	PAP2	0.89
PF00353	HemolysinCabind	0.89
PF14336	DUF4392	0.89
PF02696	SelO	0.89
PF01402	RHH_1	0.89
PF03473	MOSC	0.89
PF12728	HTH_17	0.89
PF00005	ABC_tran	0.89
PF07995	GSDH	0.89
PF13460	NAD_binding_10	0.89
PF00239	Resolvase	0.89
PF13428	TPR_14	0.89
PF13884	Peptidase_S74	0.89
PF00069	Pkinase	0.89
PF12704	MacB_PCD	0.89
PF13505	OMP_b-brl	0.89
PF07963	N_methyl	0.89
PF08443	RimK	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.57
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.79
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	1.79
COG0397	Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O)	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.89
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.89
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
All Organisms	root	All Organisms	29.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
cellular organisms	root	All Organisms → cellular organisms	29.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.46 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	4.46 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.57 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4.46 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.57 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	3.57 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.79 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.89 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.89 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.89 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.89 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.89 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.89 %
Steroidobacter agaridevorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	0.89 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.89 %
Streptomyces cattleya	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cattleya	0.89 %
Steroidobacter agaridevorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.54 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.57 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.89 %
Streptomyces cattleya	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cattleya	0.89 %
Steroidobacter agaridevorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_101320386	Not Available	2203	Open in IMG/M
3300000956\|JGI10216J12902_107352077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1920	Open in IMG/M
3300000956\|JGI10216J12902_114064050	Not Available	767	Open in IMG/M
3300004156\|Ga0062589_100605797	Not Available	951	Open in IMG/M
3300004156\|Ga0062589_101476207	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300004157\|Ga0062590_100512282	Not Available	1026	Open in IMG/M
3300004479\|Ga0062595_100072897	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300004479\|Ga0062595_102220544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cattleya	538	Open in IMG/M
3300004480\|Ga0062592_100065338	Not Available	2070	Open in IMG/M
3300005158\|Ga0066816_1016335	Not Available	595	Open in IMG/M
3300005169\|Ga0066810_10075391	Not Available	706	Open in IMG/M
3300005181\|Ga0066678_10176993	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300005332\|Ga0066388_104739140	Not Available	692	Open in IMG/M
3300005332\|Ga0066388_105603376	Not Available	636	Open in IMG/M
3300005529\|Ga0070741_11259194	Not Available	621	Open in IMG/M
3300005764\|Ga0066903_100097890	All Organisms → cellular organisms → Bacteria → Proteobacteria	3944	Open in IMG/M
3300005764\|Ga0066903_100930287	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005764\|Ga0066903_104860786	Not Available	714	Open in IMG/M
3300006196\|Ga0075422_10141363	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300006358\|Ga0068871_100467169	Not Available	1133	Open in IMG/M
3300006572\|Ga0074051_10838027	Not Available	567	Open in IMG/M
3300006573\|Ga0074055_11728850	Not Available	1087	Open in IMG/M
3300006574\|Ga0074056_11765037	Not Available	524	Open in IMG/M
3300006578\|Ga0074059_11937490	Not Available	525	Open in IMG/M
3300006579\|Ga0074054_10008045	Not Available	823	Open in IMG/M
3300006581\|Ga0074048_13201906	Not Available	609	Open in IMG/M
3300006605\|Ga0074057_12241110	Not Available	609	Open in IMG/M
3300006796\|Ga0066665_10085474	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300006845\|Ga0075421_100628408	Not Available	1258	Open in IMG/M
3300006847\|Ga0075431_101143753	Not Available	742	Open in IMG/M
3300006871\|Ga0075434_101446419	Not Available	697	Open in IMG/M
3300009012\|Ga0066710_103988194	Not Available	552	Open in IMG/M
3300009091\|Ga0102851_10677499	Not Available	1088	Open in IMG/M
3300009094\|Ga0111539_10177707	Not Available	2487	Open in IMG/M
3300009131\|Ga0115027_10195965	Not Available	1282	Open in IMG/M
3300009167\|Ga0113563_10669671	Not Available	1159	Open in IMG/M
3300009177\|Ga0105248_10018339	All Organisms → cellular organisms → Bacteria	7729	Open in IMG/M
3300009789\|Ga0126307_11429976	Not Available	560	Open in IMG/M
3300010036\|Ga0126305_10762187	Not Available	656	Open in IMG/M
3300010154\|Ga0127503_10091927	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	2992	Open in IMG/M
3300010362\|Ga0126377_11684505	Not Available	709	Open in IMG/M
3300011402\|Ga0137356_1037332	Not Available	904	Open in IMG/M
3300011439\|Ga0137432_1314703	Not Available	500	Open in IMG/M
3300011442\|Ga0137437_1110439	Not Available	944	Open in IMG/M
3300012022\|Ga0120191_10034038	Not Available	810	Open in IMG/M
3300012038\|Ga0137431_1013318	All Organisms → cellular organisms → Bacteria	2252	Open in IMG/M
3300012228\|Ga0137459_1025736	Not Available	1651	Open in IMG/M
3300012231\|Ga0137465_1177568	Not Available	644	Open in IMG/M
3300012350\|Ga0137372_11189130	Not Available	516	Open in IMG/M
3300012354\|Ga0137366_10272722	Not Available	1250	Open in IMG/M
3300012676\|Ga0137341_1052550	Not Available	683	Open in IMG/M
3300012917\|Ga0137395_11223238	Not Available	524	Open in IMG/M
3300012984\|Ga0164309_10109075	Not Available	1764	Open in IMG/M
3300012988\|Ga0164306_10737229	Not Available	787	Open in IMG/M
3300013296\|Ga0157374_11266677	Not Available	759	Open in IMG/M
3300014325\|Ga0163163_12913118	Not Available	534	Open in IMG/M
3300014868\|Ga0180088_1028985	Not Available	901	Open in IMG/M
3300014879\|Ga0180062_1110711	Not Available	629	Open in IMG/M
3300014969\|Ga0157376_10075909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2870	Open in IMG/M
3300014969\|Ga0157376_11466868	Not Available	715	Open in IMG/M
3300015255\|Ga0180077_1129354	Not Available	533	Open in IMG/M
3300015371\|Ga0132258_11353117	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300015371\|Ga0132258_12919323	Not Available	1187	Open in IMG/M
3300015372\|Ga0132256_102243805	Not Available	650	Open in IMG/M
3300015373\|Ga0132257_100367152	Not Available	1743	Open in IMG/M
3300015374\|Ga0132255_100454840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1874	Open in IMG/M
3300017789\|Ga0136617_10535706	Not Available	926	Open in IMG/M
3300017965\|Ga0190266_10060847	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1386	Open in IMG/M
3300018061\|Ga0184619_10415035	Not Available	606	Open in IMG/M
3300018072\|Ga0184635_10043423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans	1723	Open in IMG/M
3300018083\|Ga0184628_10164999	Not Available	1155	Open in IMG/M
3300018084\|Ga0184629_10009961	Not Available	3664	Open in IMG/M
3300018429\|Ga0190272_11344458	Not Available	714	Open in IMG/M
3300018466\|Ga0190268_10023354	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300018469\|Ga0190270_10480570	Not Available	1177	Open in IMG/M
3300018476\|Ga0190274_10205887	Not Available	1736	Open in IMG/M
3300018481\|Ga0190271_10999972	Not Available	961	Open in IMG/M
3300019882\|Ga0193713_1033116	Not Available	1510	Open in IMG/M
3300019887\|Ga0193729_1043417	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1850	Open in IMG/M
3300020000\|Ga0193692_1007663	All Organisms → cellular organisms → Bacteria	2715	Open in IMG/M
3300020004\|Ga0193755_1158834	Not Available	680	Open in IMG/M
3300020022\|Ga0193733_1024684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1696	Open in IMG/M
3300020580\|Ga0210403_10032854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4149	Open in IMG/M
3300021082\|Ga0210380_10151688	Not Available	1040	Open in IMG/M
3300021082\|Ga0210380_10167593	Not Available	988	Open in IMG/M
3300021405\|Ga0210387_10296083	Not Available	1423	Open in IMG/M
3300021418\|Ga0193695_1059564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	829	Open in IMG/M
3300022309\|Ga0224510_10580531	Not Available	661	Open in IMG/M
3300025941\|Ga0207711_10005716	All Organisms → cellular organisms → Bacteria	10493	Open in IMG/M
3300026326\|Ga0209801_1173478	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300026538\|Ga0209056_10175530	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300027897\|Ga0209254_10219759	Not Available	1505	Open in IMG/M
3300027907\|Ga0207428_10014588	All Organisms → cellular organisms → Bacteria	6815	Open in IMG/M
3300030939\|Ga0138303_1101671	Not Available	600	Open in IMG/M
3300030973\|Ga0075395_11034810	Not Available	581	Open in IMG/M
3300031015\|Ga0138298_1109862	Not Available	891	Open in IMG/M
3300031231\|Ga0170824_105306301	Not Available	546	Open in IMG/M
3300031231\|Ga0170824_107565558	Not Available	553	Open in IMG/M
3300031446\|Ga0170820_10375718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300031538\|Ga0310888_11093893	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300031720\|Ga0307469_10018343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3720	Open in IMG/M
3300031740\|Ga0307468_100279732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1196	Open in IMG/M
3300031824\|Ga0307413_10446923	Not Available	1025	Open in IMG/M
3300031995\|Ga0307409_100766013	Not Available	970	Open in IMG/M
3300031995\|Ga0307409_100890839	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300032002\|Ga0307416_101951983	Not Available	690	Open in IMG/M
3300032205\|Ga0307472_100451278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1093	Open in IMG/M
3300033406\|Ga0316604_10443406	Not Available	713	Open in IMG/M
3300033418\|Ga0316625_100477696	Not Available	974	Open in IMG/M
3300033419\|Ga0316601_101475978	Not Available	684	Open in IMG/M
3300033483\|Ga0316629_11021670	Not Available	651	Open in IMG/M
3300034149\|Ga0364929_0219698	Not Available	633	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.36%
Host-Associated	Host-Associated	19.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.82%
Aquatic	Environmental → Aquatic	20.54%
Plants	Host-Associated → Plants	19.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.29%
Sediment	Environmental → Aquatic → Sediment	12.50%
Freshwater	Environmental → Aquatic → Freshwater	7.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.57%
Roots	Host-Associated → Plants → Roots	1.79%
Marine	Environmental → Aquatic → Marine	0.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.50%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.57%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.79%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.79%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.89%
Ice	Environmental → Aquatic → Freshwater → Ice	0.89%
Sediment	Environmental → Aquatic → Marine → Sediment	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.79%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.79%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.50%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.46%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.57%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.68%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.79%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.79%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.89%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.89%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.89%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.89%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300011402	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT830_2	Environmental	Open in IMG/M
3300011439	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012231	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012676	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT433_2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014868	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT830_16_10D	Environmental	Open in IMG/M
3300014879	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015255	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT466_16_10D	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020000	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022309	Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_4_1	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030939	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030973	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033406	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_CT	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033483	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D1_A	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1013203863	3300000955	Soil	MEFESTEKREPPRSYVVVVYDPRDGRIVHGHEFVGRTGLFSPDGREERERETLEGARRNHGDVSRLAVLHVPAEFRPAPGSVYRVDAKVGRLVAHVTSRQPGSRPKKVPSKKVARRKKR*
JGI10216J12902_1073520772	3300000956	Soil	MEDVVEFESTHRKTAPPSHVCVIYDPKDGRIVHGHIFVGKGKGLFGPDGRDERERETLDGARRNHGDVSRLRVLHAPADFRFAPGAGYRVDLKAGRLIERDSVPQERQRQKTTPPPRKKAKKKY*
JGI10216J12902_1140640502	3300000956	Soil	MEFESTEKKKRPQSRVCIVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPADFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPTPVKKRG
Ga0062589_1006057972	3300004156	Soil	MMEEVVEFESTLRKTAPPSHVCVIYDPKDGRIVHGHVFVGEGKGLFGPEGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAAPPKRKTARTKKR*
Ga0062589_1014762071	3300004156	Soil	MEFESTEKKKAPQSHVCVVYDPRDGRIVHGHEFVGDGTGLFGREGRDQRERETLEGARRNHGDVSRLRVFHAPADFRFAPNVAYGIDTRSGRLVEHYKWPPERPRAKTVPSKKKVARKRKT*
Ga0062590_1005122821	3300004157	Soil	VEFESTLRKTAPPSHVCVIYDPKDGRIVHGHVFVGEGKGLFGPEGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAAPPKRKTARTKKR*
Ga0062595_1000728972	3300004479	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPADFRFAPNVAYRIDTKAGRLVEHYKWPPKRRRPQAGTGREEGRSEEEGIAG*
Ga0062595_1022205441	3300004479	Soil	MEFESTLRKKAPQSHVCVVYDPRDGRIIHGHEFVGDGTGLFGPEGQKEREHETLEGARRNHGDVSQLKVLHVQAGFRFAPNAAYRVDAKAGRLVEHYKWPPERTRRK*
Ga0062592_1000653382	3300004480	Soil	VEFESTLRKTAPPSHVCVIYDPKDGRIVHGHVFVGEGKGLFGPEGRDERERETLEGARRNHGEVTGLRVLHAPGDFRFAPGIAYRVDVKASRLVERSRVERPRPKAAPPKRKTARTKKR*
Ga0066816_10163351	3300005158	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKGTAGKQKK*
Ga0066810_100753911	3300005169	Soil	MEFESSEKTKAPLPLVCVVYNRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKATAGKQKK*
Ga0066678_101769933	3300005181	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVKEKVARKRNA*
Ga0066388_1047391401	3300005332	Tropical Forest Soil	MEFESTEKKTAPPSHVCVVYDPRDGRIVHGHAFVGEGPGLFGPEGREERERETLEGARRNHGDVTRLRVFHAPADFRFAPNVAYRVDTRANRLVEHYKWPPERPRRPVQRG*
Ga0066388_1056033762	3300005332	Tropical Forest Soil	MEFESSEKNKAPRCLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKKTK*
Ga0070741_112591942	3300005529	Surface Soil	MEFESTDRRKAPQSHVCVVYDPRDGRIVHGHEFIGDGTGLFGPGGQKEREHETLDGARRNHGDVSQFRVFHAPAGFRFAPNVAYRIDAKSGRLVEHYKWPPERRQAGT*
Ga0066903_1000978902	3300005764	Tropical Forest Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPEGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKAGRLVELVRRKPKPAKKGTAGKRKA*
Ga0066903_1009302874	3300005764	Tropical Forest Soil	MEFESTEKKKRPTSRLCVVYDPPDGRIVHGHEFVGDGTGVFDPEAKQERERETLEGARRNHGDVSHLRVFHVPADFRFAPNVVYRVDSTEERLVEHHKWPPKTAHRSSHSS*
Ga0066903_1048607861	3300005764	Tropical Forest Soil	MEFESSEKKKAPLTQVCLVYDRDGRIVHGHVFVGDGTGMFGPEGREDRETLDGAQRNHGELVSRQRVLHAPATFRFNPNVAYRVDTKAARLVEYVRTRPKPAKKGAARKNR*
Ga0075422_101413631	3300006196	Populus Rhizosphere	RARAARLLGRVGAGAAVSQLLVRMEDVVEFESTHRKTAPPSHVCVIYDPKDGRIVHGHIFVGKGKGLFGPDGRDERERETLDGARRNHGDVSRLRVLHAPADFRFAPGAGYRVDLKAGRLIERDSVPQERQRQKTTPPPRKKAKKKY*
Ga0068871_1004671693	3300006358	Miscanthus Rhizosphere	MEFESTEKTAPPPSHVCVIYDPNDGRIVHGHVFVGEGTGLFGREGQDERERETLEGARRNHGDVSLLRVLHAPADFRFASNVAYRVDVRTGRLVERGRVPHERRRRRPALPDRPD*
Ga0074051_108380272	3300006572	Soil	MEFESSEKNKAPRSVVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKATAGKQKK*
Ga0074055_117288502	3300006573	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKATAGKQKK*
Ga0074056_117650372	3300006574	Soil	MEFESSEKNKAPRSVVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRR
Ga0074059_119374902	3300006578	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPSKKGTAGKQKK*
Ga0074054_100080451	3300006579	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKA
Ga0074048_132019061	3300006581	Soil	MEFESSEKNKAPRSVVCVVHDRNGRIVHGHVFVGDGTGLFGPQGRAERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKATAGKQKK*
Ga0074057_122411102	3300006605	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKPSKKATAGKKKK*
Ga0066665_100854743	3300006796	Soil	MEFESTEKQKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRIFHVPADFRFASNVAYRIDTKAGRLVEHYKWPPERRRSKPAPVKKKVARKRKA*
Ga0075421_1006284083	3300006845	Populus Rhizosphere	MEFESTLKKTPPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLDGARRNHGDVSHLRVLHAPSAFRFAPAVAYRVDVKAGRLVERDKVPHQRQRPKTAPPKRKTARAKKR*
Ga0075431_1011437531	3300006847	Populus Rhizosphere	VMEFESTLKKTPPPSHVCVIYDPRDGRIVHGHVFVGEKAALFGPKGRDERERETLDGARRNHGDVSHLRVLHAPSAFRFAPAVAYRVDVKAGRLVERDKVPHQRQRTKTAPPKRKTARAKKR*
Ga0075434_1014464192	3300006871	Populus Rhizosphere	MEFESTRRKTPPPSHVCVIYDPQDGRIVHGHIFVGEKAALFGPKGRDERERETLEGARRNHGDAVSHLRVLHAPADFRLAPNAAYRVDVKAGRLVERAMVLHERPRQKKAPPNTK*
Ga0066710_1039881941	3300009012	Grasslands Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPDGNQERERETLEGARRNHGDVSRLRIFHVPADFRFASNVAYRIDTKAGRLVEHYKWPSERRRPKPASVKKKVGRKRK
Ga0102851_106774991	3300009091	Freshwater Wetlands	MEFESSEKKKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPDVEYRVDTKAGRLVEHVRRKPNASKKGTAGKQKR*
Ga0111539_101777073	3300009094	Populus Rhizosphere	MREVVVEFESTLRKTAPPSHVCVIYDPRDGRIVHGHVFVGEGTGLFGPDGRAARERETLEGARHNHGDVSHLKVLHAPKDFRFAPAVAYRVDVKAGRLVERDRVPHQRLRSKTAPPKRKTTAPKKRK*
Ga0115027_101959653	3300009131	Wetland	MEFESSEKKKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQNK*
Ga0113563_106696712	3300009167	Freshwater Wetlands	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQNK*
Ga0105248_100183394	3300009177	Switchgrass Rhizosphere	MMEGVMEFQSTQKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPHERPPRKPAPPNGK*
Ga0126307_114299762	3300009789	Serpentine Soil	SHVCVIYDPHDGRIIHGHVFVGEGTGLFGPEGRDERERETLEGARRNHGDDVSHLRVLHAPADFRFAPDAAYRVDVKAGRLVERAKVLHERPHRKAAPPNRT*
Ga0126305_107621872	3300010036	Serpentine Soil	MEFESTEKKTAPPSHVCVIYDPHDGRIIHGHVFVGEGTGLFGPEGRDERERETLEGARRNHGDDVSHLRVLHAPADFRFAPDAAYRVDVKAGRLVERAKILHERPHRKAAPPNRT*
Ga0127503_100919273	3300010154	Soil	MEFESTEKKKRLQSRVCVVYDPRDGRIVHGHEFVGEGSGVFSPEGNQERERETLEGARRNHGDVSHLRVFHVPTDFRFASNVAYRIDTRAGRLVEHYKWPPERRRPKPAPVKKKVAQEEKGVA*
Ga0126377_116845051	3300010362	Tropical Forest Soil	MEFESTEKRKAPQSHVCVVYDPRDGRIVHGHEFVGDGTGLFGPEGKHEREQQTLEGARRNHGDVSRLRVLHAPTDFRFAPNVAYRVETKSGRLVEHRKWPPERRQRKPTPIKKKVARGKRR*
Ga0137356_10373323	3300011402	Soil	VMTEGVMEFESTLKKTPPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAVPPKRKTARAKKR*
Ga0137432_13147031	3300011439	Soil	ATRLLRVVGEGAAVSQLLVMTEGVMEFESTLKKTPPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKKTPPKRK*
Ga0137437_11104392	3300011442	Soil	MMEGVMEFQSTQKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPDVAYRVDVKGGRLVERDKVPRKPAPPNRK*
Ga0120191_100340382	3300012022	Terrestrial	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGNLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQKR*
Ga0137431_10133184	3300012038	Soil	MMEGVMEFQSTHKKTAPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAVPPKRKTARAKKR*
Ga0137459_10257363	3300012228	Soil	VTKERAMEFESSDRKPAPPSHVCVIYDPRDGRIVHGHIFVGKSARLFGPEGREERERETLDGARRIHGDVSKLRTFHVPSDFRFAPNAAYRVDSKSNRLIERPTGPLGKPRRKSLPAKKKKSPPPKSRR*
Ga0137465_11775682	3300012231	Soil	MMEGVMEFQSTQKKTAPPSHVCVIYDPLDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDVSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPQRPP
Ga0137372_111891302	3300012350	Vadose Zone Soil	DKKKAPQSRVCVVYDPRNGRIVHGHEFVGEGTGLFAAEGREEREHQTLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVKHYKWPPERRRPKPAPVKEKVARKRKA*
Ga0137366_102727221	3300012354	Vadose Zone Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPASVKKNVARKRKA*
Ga0137341_10525501	3300012676	Soil	DPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAVPPKRKTARAKKR*
Ga0137395_112232382	3300012917	Vadose Zone Soil	MEFESTEKKKRPQSRVCLVYDPRDGRIVHGHEFVGEGTGVFGPEGNHERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRVDTKAGRLVAHYKWPPERRRPKAVPVKKKVARKRKA*
Ga0164309_101090751	3300012984	Soil	HVCVIYDPNDGRIVHGHVFVGEGTGLFGREGQDERERETLEGAGRNPGDVSLLRVLHAPADFRFASNVAYRVDVRTGRLVERGRVPHERRRRRPALPDRPD*
Ga0164306_107372292	3300012988	Soil	MTEAAMEFESTEKTAPPPSHVCVIYDPNDGRIVHGHVFVGEGTGLFGREGQDERERETLEGARRNHGDVSLLRVLHAPADFRFASNVAYRVDVRTGRLVERGRVPHERRRRRPALPDRP
Ga0157374_112666772	3300013296	Miscanthus Rhizosphere	MTEAAMEFESTEKTAPPPSHVCVIYDPNDGRIVHGHVFVGEGTGLFGREGQDERERETLEGARRHHGDVSLLRVLHAPADFRFASNVAYRVDVRTGRLVERGRVPHERRRRRPALPDRPD
Ga0163163_129131181	3300014325	Switchgrass Rhizosphere	MMEGVMEFQSTQKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDVSLLRVLHAPADFRFASNVAYRVDVRTGRLV
Ga0180088_10289851	3300014868	Soil	MEFESTLKKTPPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAVPPKRKTARAKKR*
Ga0180062_11107111	3300014879	Soil	MEFQSTHKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPHERPPRKPAPPNRK*
Ga0157376_100759093	3300014969	Miscanthus Rhizosphere	MTEAAMEFESTEKTAPPPSHVCVIYDPNDGRIVHGHVFVGEGTGLFGREGQDERERETLEGARRNHGDVSLLRVLHAPADFRFASNVAYRVDVRTGRLVERGRVPHERRRRRPALPDRPD
Ga0157376_114668681	3300014969	Miscanthus Rhizosphere	GRVSHRRDQRARPTCLLGRVGEGAAVSQLLVMMEGVMEFQSTQKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPHERPPRKPAPPNGK*
Ga0180077_11293542	3300015255	Soil	MMEGAMEFESTLKKTPPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDVTGLRVLHAPGDFRFAPGIAYRVDVKAGRLVERSRVERPRPKAVPPKRK
Ga0132258_113531172	3300015371	Arabidopsis Rhizosphere	MEFESSEKKKAPLPLVCVVYDRNGRIVHGHVFVGDGTGLFGPEGRDERERETLEGARRNHGDVVSRLRVLHAPSTFRFVPNVAYRVDTKAGRLVELPATRRPKPGPAKKEAVRKRKT*
Ga0132258_129193233	3300015371	Arabidopsis Rhizosphere	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHIFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQKR*
Ga0132256_1022438051	3300015372	Arabidopsis Rhizosphere	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQKR*
Ga0132257_1003671521	3300015373	Arabidopsis Rhizosphere	SSEKNKAPRSLVCVVHDRNGRIVHGHIFVGDGTGLVGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQKR*
Ga0132255_1004548404	3300015374	Arabidopsis Rhizosphere	MEGVMEFESTEKKTAPPSHVCVIYDPNDGRIVHGHVFVGEGPGLFGPEGRDERERETLEGARRNHGDISRLRVLHAPAYFRFAANVAYRVDVRTGGLVERGRIPRERRRRRPASS
Ga0136617_105357061	3300017789	Polar Desert Sand	MEFESSEKKKAPQPLVCVVFDRDGRIVHGHVFVGDGTGMFGPEGREERERETLEGARRSHGVLVSRLKVLHAPATFRFKPNVAYRVDTKAGRLIEHERGKPRPESKGTARKRKA
Ga0190266_100608472	3300017965	Soil	MEFESTQRKIAPPSNVCVIFDPRDGRIVHGHVFVGEGKGLFGPEGRDERERETLEGARRNHGDVSVFRVLHAPADFRLAPNAAYRVDVKAGRLVEREKVPHPRPHPKPSPDQK
Ga0184619_104150352	3300018061	Groundwater Sediment	MEFESTDKKKVPQSHVCVIYDPRTGRIVHGHEFVGDGTGLFGPDGREEREHQTLEGARRNHGDVSLLRIFHVPTDFRFAPNVAYRIDTRSGRLVEHAKWPPERPRPKAAPGL
Ga0184635_100434232	3300018072	Groundwater Sediment	MEFQSTQRKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFIPNVAYRVDVKEGRLVERDRVPHERPPRKPAPPNIK
Ga0184628_101649992	3300018083	Groundwater Sediment	VEFQSTQRKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFIPNVAYRVDVKEGRLVERDRVPHERPPRKPAPPNIK
Ga0184629_100099613	3300018084	Groundwater Sediment	MEFQSTQKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPDVAYRVDVKGGRLVERDKVPRKPAPPNRK
Ga0190272_113444581	3300018429	Soil	MEFQSTHKKTAPPSHVCVIYDPQDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPHERPPRKPAPPNRT
Ga0190268_100233543	3300018466	Soil	MEFESSEQNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPRGREERERETLEGARRNHGDLVSRLHVFHAPATFRFDPNVAYRVDTKARRLVELVRRKPNPSKTRTEGKRKK
Ga0190270_104805701	3300018469	Soil	MEFESSDRKPAPPTHVCVIYDPRDGRIVHGHIFVGKSARLFGPEGREERERETLDGARRIHGDISKLRAFHAPSDFRFAPNVGYRVDTKSNRLVERPTAPLGKPGRKSPPAKTKKSPSSKSRR
Ga0190274_102058872	3300018476	Soil	VEFQSTQKTTAPPSQVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPQRPPRKPAPPNRN
Ga0190271_109999722	3300018481	Soil	MEFESSEKKKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRLNTDVEYRVDTKAGRLVEHVRRKPKASKKGRAGKQKR
Ga0193713_10331163	3300019882	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSGLRVFHVPADFRFASNVAYRIDTKAGRLVEHYKWPPERRRPKPGSVKKKVARKRK
Ga0193729_10434173	3300019887	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGAEGNQERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPGSVKKKVALKRK
Ga0193692_10076632	3300020000	Soil	MEFQSTQQKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDVSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDKVPHERPPRKPAPPNRK
Ga0193755_11588342	3300020004	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSGLRVFHVPADFRFASNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVKKKVARKRK
Ga0193733_10246844	3300020022	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGAEGNQERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPER
Ga0210403_100328542	3300020580	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPADFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVGEEGRPEEEGEAG
Ga0210380_101516882	3300021082	Groundwater Sediment	MEFESTHRKTPPPSHVCVIYDPQDGRIVHGHVFVGEKAALFGPKGRDERERETLEGARRNHGDAVSHLRVLHAPADFRLAPNAAYRVDVKAGRLVERPTVLHERPRQKKAPPNRK
Ga0210380_101675932	3300021082	Groundwater Sediment	MEFQSTQKKTAPPSHVCVIYDPLDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGSRLVERDKVPQGPPRKPAPPNRK
Ga0210387_102960832	3300021405	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGGVSRLRVFHVPVDFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVGEEGRPEEEGEAG
Ga0193695_10595641	3300021418	Soil	AMEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPADFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVEKNVARQRKA
Ga0224510_105805312	3300022309	Sediment	MDFESTENRKAPRTLVCVVHDREGRIVHGHVFVGDATTGLFSAKGRAERERETLEGARRNHGAKVARLRVLHAPPTFRFDPDVAYRVDVKARRLVKDEGAGPPPAMPGTAKARKKSSP
Ga0207711_100057167	3300025941	Switchgrass Rhizosphere	MEFQSTQKKTAPPSHVCVIYDPHDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPAHFRFAPNVAYRVDVKGGRLVERDKVPHERPPRKPAPPNGK
Ga0209801_11734781	3300026326	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRVFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVKEKVARKRN
Ga0209056_101755302	3300026538	Soil	MEFESTEKQKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRIFHVPADFRFASNVAYRIDTKAGRLVEHYKWPPERRRSKPAPVKKKVARKRK
Ga0209254_102197593	3300027897	Freshwater Lake Sediment	MEFESSEKKKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPDVEYRVDTKAGRLVEHVRRKPKASKKGTAGKQKR
Ga0207428_100145882	3300027907	Populus Rhizosphere	VEFESTHRKTAPPSHVCVIYDPKDGRIVHGHIFVGKGKGLFGPDGRDERERETLDGARRNHGDVSRLRVLHAPADFRFAPGAGYRVDLKAGRLIERDSVPQERQRQKTTPPPRKKAKKKY
Ga0138303_11016711	3300030939	Soil	MEFASTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRIFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPKSRRIKPAPVKKEEVARKRKA
Ga0075395_110348102	3300030973	Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGSGVFSPEGNQERERETLEGARRNHGDVSHLRVLHVPTGFRFASNVAYRIDNKAGRLVEHYKWPPERRRPK
Ga0138298_11098621	3300031015	Soil	MEFASTENKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRIFHVPANFRFAPNVAYRIDTKAGRLVEHYKWPPERRRIKPAPVKKEVARKRK
Ga0170824_1053063011	3300031231	Forest Soil	MEFESTEKKKRPQSRICVVYDPRDGRIVHGHEFVGEGTGMFGPDGNQERERETLEGARRNHGDVSRLRIFHVPANFRFAPNVAYRIDTKGGRLVEHYKWPPERRRIKPAPVKKEVARKRK
Ga0170824_1075655581	3300031231	Forest Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGSGVFSPEGNQERERETLEGARRNHGDVSHLRVFHVPTGFRFASNVAYRIDNKAGRLVEHYKWPPERRRPKPAPVKKKVAR
Ga0170820_103757181	3300031446	Forest Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVARLRIFHVPANFRFAPNVAYRIDTKGGRLVEHYKWPPERRRIKPAPVKKGVARKRK
Ga0310888_110938932	3300031538	Soil	MEVESSEKKKAPQSLVCVAYDREGRIVHGHIFVGDGTGLFGPEGREERERETLEGARRNHGNIVSRLRVLHAPATFRLAPNVAYRVDVKAGQLVEHVRPRPAATKKKMARKRKP
Ga0307469_100183431	3300031720	Hardwood Forest Soil	MEFESSEKKKAPLPLVCVVYDRDGCIVHGHVFVGDGTGMFGPEGREERERETLEGARRNHGDVVSRLRVLHAPATFRFVPNVAYRVDTKAGRLVKLPATRRPKPGPAKKEAVRKRKT
Ga0307468_1002797322	3300031740	Hardwood Forest Soil	MEFESSEKKKAPLPLVCVVYDRDGCIVHGHVFVGDGTGMFGPEGREERERETLEGARRNHGDVVSRLRVLHAPATFRFVPNVAYRVDTKAGRLVELPATRRPKPGPAKKEAVRKRKT
Ga0307413_104469232	3300031824	Rhizosphere	MEFESTEKKKAPSSHICVVYDPRDGRIIHGHEFVGDGTGVFGPDGNEEREQQTLEGARRNHGSLSRLKVLHVPANFRFTPNAAYRVDPKAGRLVQHARWTPEAGRPQATSAKKAANRKRK
Ga0307409_1007660131	3300031995	Rhizosphere	MEFESTEKKKAPSSHICVVYDPRDGRIIHGHEFVGDGTGVFGPDGNEEREQQTLEGARRNHGSLSRLKVLHVPANFRFTPNAAYRVDPKAGRLVQHARWTPEAG
Ga0307409_1008908391	3300031995	Rhizosphere	ICVVYDPRDGRIIHGHEFVGDGTGVFGPDGNEEREQQTLEGARRNHGNLSRLKVLHVPANFRFTPNAAYRVDPKAGRLVQHARWTPEAGRPQATSAKKAANRKRKS
Ga0307416_1019519831	3300032002	Rhizosphere	MEFESTEKKKAPSSHICVVYDPRDGRIIHGHEFVGDGTGVFGPDGNEEREQQTLEGARRNHGNLSRLKVLHVPANFRFTPNAAYRVDPKAGRLVQHARWTPEAGRPQATSAKKAANRKRK
Ga0307472_1004512783	3300032205	Hardwood Forest Soil	MEFESTEKKKRPQSRVCVVYDPRDGRIVHGHEFVGEGTGVFGPEGNQERERETLEGARRNHGDVSRLRIFHVPADFRFASNVAYRIDTKAGRLVEHYKWPPERRRPKPAPVKKKVVGKRK
Ga0316604_104434062	3300033406	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQNK
Ga0316625_1004776963	3300033418	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTAGKQKR
Ga0316601_1014759782	3300033419	Soil	MEFESSEKNKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPNVAYRVDTKARRLVELVRRKPKASKKGTA
Ga0316629_110216701	3300033483	Soil	MEFESSEKKKAPRSLVCVVHDRNGRIVHGHVFVGDGTGLFGPQGREERERETLEGARRNHGDLVSRLQVFHAPATFRFNPDVEYRVDTKAGRLVEHVRRKPNASKKGTAGKQKR
Ga0364929_0219698_207_563	3300034149	Sediment	MMEGVMEFQSTQKKTAPPSHVCVIYDPLDGRIVHGHVFVGEGTGLFGLEGRDERERETLEGARRNHGDLSRLRVLHAPADFRFAPNVAYRVDVKGGRLVERDNVPQRPPRKQAPPNRQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084428

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences