Metagenome / Metatranscriptome Family F084557

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084557
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	69 residues
Representative Sequence	VTHDAVTHDVVLARGDGSKRKFRVYGRPMPGYGDTITLPVDGQLIRARVTVSSDKPETDQSVDAELVELVE
Number of Associated Samples	79
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.18 %
% of genes near scaffold ends (potentially truncated)	28.57 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.393 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.036 % of family members)
Environment Ontology (ENVO)	Unclassified (34.821 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.893 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 41.41% Coil/Unstructured: 58.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03631	Virul_fac_BrkB	4.46
PF00830	Ribosomal_L28	1.79
PF00005	ABC_tran	0.89
PF07244	POTRA	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	4.46
COG0227	Ribosomal protein L28	Translation, ribosomal structure and biogenesis [J]	1.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
All Organisms	root	All Organisms	36.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
cellular organisms	root	All Organisms → cellular organisms	36.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	29.46 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	25.00 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	3.57 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.57 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.39 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	25.00 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.57 %
Hypericibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100355359	Not Available	538	Open in IMG/M
3300002245\|JGIcombinedJ26739_100050079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3800	Open in IMG/M
3300002245\|JGIcombinedJ26739_101203705	Not Available	647	Open in IMG/M
3300003505\|JGIcombinedJ51221_10117521	Not Available	1065	Open in IMG/M
3300003505\|JGIcombinedJ51221_10142399	Not Available	966	Open in IMG/M
3300004080\|Ga0062385_10036256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2025	Open in IMG/M
3300004080\|Ga0062385_11015028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300004082\|Ga0062384_100991991	Not Available	600	Open in IMG/M
3300004082\|Ga0062384_101031043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300004092\|Ga0062389_100458084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1412	Open in IMG/M
3300004092\|Ga0062389_100698367	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300004092\|Ga0062389_102494542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300005167\|Ga0066672_10911107	Not Available	543	Open in IMG/M
3300005171\|Ga0066677_10183452	Not Available	1163	Open in IMG/M
3300005178\|Ga0066688_10627514	Not Available	690	Open in IMG/M
3300005187\|Ga0066675_10072556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter	2194	Open in IMG/M
3300005332\|Ga0066388_104884702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300005435\|Ga0070714_100722205	Not Available	962	Open in IMG/M
3300005436\|Ga0070713_100736267	Not Available	943	Open in IMG/M
3300005436\|Ga0070713_101623653	Not Available	627	Open in IMG/M
3300005437\|Ga0070710_10304572	Not Available	1041	Open in IMG/M
3300005439\|Ga0070711_100315868	Not Available	1247	Open in IMG/M
3300005439\|Ga0070711_100769760	Not Available	815	Open in IMG/M
3300005560\|Ga0066670_10504261	Not Available	743	Open in IMG/M
3300005602\|Ga0070762_10693067	Not Available	683	Open in IMG/M
3300005602\|Ga0070762_11196098	Not Available	526	Open in IMG/M
3300005610\|Ga0070763_10042218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2139	Open in IMG/M
3300005764\|Ga0066903_101507316	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300005921\|Ga0070766_10816616	Not Available	636	Open in IMG/M
3300006175\|Ga0070712_100072290	Not Available	2470	Open in IMG/M
3300006175\|Ga0070712_100957635	Not Available	740	Open in IMG/M
3300006176\|Ga0070765_101363083	Not Available	668	Open in IMG/M
3300006755\|Ga0079222_11791784	Not Available	593	Open in IMG/M
3300010048\|Ga0126373_10803184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1003	Open in IMG/M
3300010048\|Ga0126373_11821217	Not Available	672	Open in IMG/M
3300010325\|Ga0134064_10511611	Not Available	500	Open in IMG/M
3300010359\|Ga0126376_11530880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300010361\|Ga0126378_11425627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	784	Open in IMG/M
3300010366\|Ga0126379_13737800	Not Available	510	Open in IMG/M
3300010376\|Ga0126381_100721507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1427	Open in IMG/M
3300011120\|Ga0150983_14314414	Not Available	744	Open in IMG/M
3300011120\|Ga0150983_14828943	Not Available	689	Open in IMG/M
3300011120\|Ga0150983_15782648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300012212\|Ga0150985_106061926	Not Available	573	Open in IMG/M
3300012469\|Ga0150984_101332211	Not Available	620	Open in IMG/M
3300012582\|Ga0137358_10067779	Not Available	2394	Open in IMG/M
3300012582\|Ga0137358_10244750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1221	Open in IMG/M
3300014157\|Ga0134078_10189795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300015242\|Ga0137412_10861739	Not Available	660	Open in IMG/M
3300018468\|Ga0066662_10849879	Not Available	891	Open in IMG/M
3300018482\|Ga0066669_10181061	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300020579\|Ga0210407_10012944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6207	Open in IMG/M
3300020579\|Ga0210407_10463983	Not Available	990	Open in IMG/M
3300020580\|Ga0210403_10514805	Not Available	971	Open in IMG/M
3300020580\|Ga0210403_10656438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	843	Open in IMG/M
3300020580\|Ga0210403_10705781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	808	Open in IMG/M
3300020580\|Ga0210403_11324139	Not Available	549	Open in IMG/M
3300020581\|Ga0210399_11232388	Not Available	592	Open in IMG/M
3300020582\|Ga0210395_10352713	Not Available	1107	Open in IMG/M
3300020582\|Ga0210395_10508093	Not Available	907	Open in IMG/M
3300020583\|Ga0210401_10394993	Not Available	1245	Open in IMG/M
3300020583\|Ga0210401_10557951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300021088\|Ga0210404_10191105	Not Available	1094	Open in IMG/M
3300021151\|Ga0179584_1412320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1226	Open in IMG/M
3300021171\|Ga0210405_10078114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2608	Open in IMG/M
3300021171\|Ga0210405_10107955	All Organisms → cellular organisms → Bacteria	2197	Open in IMG/M
3300021171\|Ga0210405_10729762	Not Available	763	Open in IMG/M
3300021178\|Ga0210408_10241516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1438	Open in IMG/M
3300021178\|Ga0210408_10350213	Not Available	1177	Open in IMG/M
3300021178\|Ga0210408_10393271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1104	Open in IMG/M
3300021178\|Ga0210408_11287820	Not Available	555	Open in IMG/M
3300021180\|Ga0210396_10071251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3163	Open in IMG/M
3300021180\|Ga0210396_11419258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300021180\|Ga0210396_11422280	Not Available	573	Open in IMG/M
3300021286\|Ga0179583_1003201	Not Available	1114	Open in IMG/M
3300021286\|Ga0179583_1010159	Not Available	558	Open in IMG/M
3300021286\|Ga0179583_1086915	Not Available	608	Open in IMG/M
3300021315\|Ga0179958_1214445	Not Available	881	Open in IMG/M
3300021406\|Ga0210386_10308525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1357	Open in IMG/M
3300021420\|Ga0210394_10633846	Not Available	939	Open in IMG/M
3300021432\|Ga0210384_11158422	Not Available	677	Open in IMG/M
3300021479\|Ga0210410_10946069	Not Available	749	Open in IMG/M
3300021559\|Ga0210409_10942455	Not Available	737	Open in IMG/M
3300021560\|Ga0126371_10097746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2918	Open in IMG/M
3300022708\|Ga0242670_1053744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	580	Open in IMG/M
3300026340\|Ga0257162_1030256	Not Available	665	Open in IMG/M
3300026355\|Ga0257149_1057908	Not Available	563	Open in IMG/M
3300026552\|Ga0209577_10127549	Not Available	2029	Open in IMG/M
3300026552\|Ga0209577_10374406	Not Available	1038	Open in IMG/M
3300027069\|Ga0208859_1000169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4634	Open in IMG/M
3300027104\|Ga0208095_1010513	Not Available	648	Open in IMG/M
3300027297\|Ga0208241_1035097	Not Available	778	Open in IMG/M
3300027610\|Ga0209528_1086089	Not Available	695	Open in IMG/M
3300027729\|Ga0209248_10060000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1161	Open in IMG/M
3300027855\|Ga0209693_10117053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1319	Open in IMG/M
3300027884\|Ga0209275_10586459	Not Available	639	Open in IMG/M
3300027884\|Ga0209275_10701196	Not Available	583	Open in IMG/M
3300027889\|Ga0209380_10258077	Not Available	1024	Open in IMG/M
3300027903\|Ga0209488_10727000	Not Available	709	Open in IMG/M
3300028906\|Ga0308309_11488374	Not Available	578	Open in IMG/M
3300029636\|Ga0222749_10054931	Not Available	1768	Open in IMG/M
3300029636\|Ga0222749_10538877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300031057\|Ga0170834_106795816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300031231\|Ga0170824_116339934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2485	Open in IMG/M
3300031753\|Ga0307477_10340229	Not Available	1033	Open in IMG/M
3300031754\|Ga0307475_10645704	Not Available	846	Open in IMG/M
3300031771\|Ga0318546_10832443	Not Available	650	Open in IMG/M
3300031796\|Ga0318576_10137264	Not Available	1136	Open in IMG/M
3300031910\|Ga0306923_11234797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300031942\|Ga0310916_11626053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300032059\|Ga0318533_11325400	Not Available	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.07%
Aquatic	Environmental → Aquatic	7.14%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.07%
Freshwater	Environmental → Aquatic → Freshwater	7.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.50%
Loam	Environmental → Terrestrial → Soil → Loam	28.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.14%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.07%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.04%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.25%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021286	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021315	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF024 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1003553592	3300000364	Soil	MRRDAETHDVVLTRGDGPKRKFRIYGRPMPXIGEVIXLPVDGQLIRARVTVCSKKPAMGEAADAEVVELVR*
JGIcombinedJ26739_1000500794	3300002245	Forest Soil	MRQDAVTHDVVLARRDGPKRKFRIYGRPMPGNGDIIALPVDGRLISAXVTVRSEKPDMEQSVDAELVELAE*
JGIcombinedJ26739_1012037052	3300002245	Forest Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVELVE*
JGIcombinedJ51221_101175212	3300003505	Forest Soil	MRQDAVTHDVVLARRDGPKRKFRIYGRPMPGNGDIIALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE*
JGIcombinedJ51221_101423993	3300003505	Forest Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVELVA*
Ga0062385_100362564	3300004080	Bog Forest Soil	MLFLARGDGPKRKFRIYGRPMPEDGDTIALPVDGRLVSARVTARSPETEMDQTVDPELVE
Ga0062385_110150282	3300004080	Bog Forest Soil	DAVTHDVVLARGDGPRRKFRVYGRPMPGNGDTIALPVDGRLISARVTVRSERPELDQSGDAELVELAE*
Ga0062384_1009919912	3300004082	Bog Forest Soil	MRHDAVTHDVVLARGDGPKRKFRIYGRAMPENGDTIAFPVDGRLVNARITLGSEKPEMDQSV
Ga0062384_1010310431	3300004082	Bog Forest Soil	AVTHDVVLTRGDGSERKFRIYGRPMPENGDTIELPVDGRLVNARVTVRSEKPEMDQSVAVELAELVE*
Ga0062389_1004580842	3300004092	Bog Forest Soil	MGHDAVTHDVVLARGDGPRRKFRVYGRPMPGNGDTIALPVDGRLISARVTVRSERPELDQSGDAELVELAE*
Ga0062389_1006983672	3300004092	Bog Forest Soil	MRHDAVTHDVVLARGDGPKRKFRIYGRAMPENGDTIAFPVDGRLVNARITLGSEKPEMDQSVDAELIE*
Ga0062389_1024945422	3300004092	Bog Forest Soil	MSHDAVTHDVVLTRGDGSERKFRIYGRPMPENGDTIELPVDGRLVNARVTVRSEKPEMDQSVAVELAELVE*
Ga0066672_109111072	3300005167	Soil	VTNDAVTHDVALAIGNGSKRKFRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKDQSVDAELVELVE*
Ga0066677_101834521	3300005171	Soil	VTNDAVTHDVALAIGNGSKRKFRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKKDQSVDAELVELVE*
Ga0066688_106275142	3300005178	Soil	VTHDAVTHDVVLARGDGSKRKFRIYGRPMPGYGDTITLPDDGQLIRARVTVSSDKPKKDQSVDAELVELVE*
Ga0066675_100725561	3300005187	Soil	GNGSKRKVRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKKDQSVDAELVELVE*
Ga0066388_1048847021	3300005332	Tropical Forest Soil	GDGSKRKFRVYGRPMPEKGDTVTLPVDGQLVRARVISSAEPEIASTVDGEALELAE*
Ga0070714_1007222052	3300005435	Agricultural Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPKMDQSIDAELVE*
Ga0070713_1007362672	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE*
Ga0070713_1016236531	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRHDAVTHDFMLTRGDGSKRKFRIYGRPMPENGDTIALPVGGRLINARVTARLAESEMDQSVDAELVELIE*
Ga0070710_103045723	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MRHDAVTHDFMLARGDGSKRKFRIYGRPMPENGDTIALPVDGRLINARVTARLAESEMDQSVDAELVELIE*
Ga0070711_1003158681	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDRSVDADLVELVE*
Ga0070711_1007697602	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRHDAVTHDFMLTRGDGSKRKFRIYGRPMPENGDTIALPVDGRLINARVTARLAESEMDQSVDAELVELIE*
Ga0066670_105042612	3300005560	Soil	MRNGAATHDVVLARGDGSKRKFRIYGRPMPVDGDTIGLPVDGRLVSARVTVRSQNAEVDQTVDAELVE*
Ga0070762_106930672	3300005602	Soil	MTHDTVTHDVVLTRGDGSERKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE*
Ga0070762_111960981	3300005602	Soil	MRQDAVTHDVVLARRDGPKRKFRIYGRPMPGNGDIIALPVNGRLMSARVTVRSEKPDMEQSAEAELVELIE*
Ga0070763_100422182	3300005610	Soil	MTQDAVTHDVVLARGDAPKRKFRIYGRPLPGNGDIIALPVDGRLISARVTVRSEKPEMEQSVDAELVELAE*
Ga0066903_1015073162	3300005764	Tropical Forest Soil	VTHYAVTHDIVLARGDGSKRKFRVYGRPMPEKGDTVTLPVDGQLIRARVVSSAEPEIASTVDAEALELAE*
Ga0070766_108166162	3300005921	Soil	MTQDAVTHDVVLARGDAPKRKFRIYGRPLPGNGDIIALPVDGRLISARVTVRSEKPDMEQSAEAELVELIE*
Ga0070712_1000722903	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCRDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE*
Ga0070712_1009576352	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRHDAVTHDFMLTRGDGSKRKFRIYGRPMPENGDTIALPVDGRLINTRVTARLAESEMDQSVDAELVELIE*
Ga0070765_1013630831	3300006176	Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIIALPVDGRLISARVTVRSEKPEMEQSVDAELVEL
Ga0079222_117917841	3300006755	Agricultural Soil	MARDALTRDVLLARGDGSKRKFRIYGRPMPAYGNIIELPVDGQRIRARVTVPSETAEMDQSVDAELVELVE*
Ga0126373_108031841	3300010048	Tropical Forest Soil	HDIVLARGDGSKRKFRVYGRPMPEKGDTVTLPVDGQLVRARVISSAEPEIASTVDGEALELAE*
Ga0126373_118212171	3300010048	Tropical Forest Soil	VTLYAITHDVVLARADGSKRKFRVYGRPVPEYGDTITWPVDVQLIKARITVRVDEPKVDQSIAAELLELVE*
Ga0134064_105116111	3300010325	Grasslands Soil	DAVTHDVALTIGNGSKRKVRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKKDQSVDAELVELVE*
Ga0126376_115308802	3300010359	Tropical Forest Soil	VTHDPVTHDIVLARGDGSKRKFRVYGRPMPEKGDTVTLPVDGQLVRARVISSAEPEIASTVDGEALELAE*
Ga0126378_114256272	3300010361	Tropical Forest Soil	VAHYAVTHDVVLARADVSKRKFRVYGRPVPEYGDTITLPVDVQLIKARITVRVDEPKVDQSIAAELLELVE*
Ga0126379_137378001	3300010366	Tropical Forest Soil	VTLYAVTHDVVLARADGSKRKFRVYGRPMPEYGDTITLPVDGQLIKARITVRVDEPKVDQSI
Ga0126381_1007215074	3300010376	Tropical Forest Soil	VAHYAVTHDVVLARADGSKRKFRVYGRPVPEYGDTITLPVDVQLIKARITVRVDEPKVDQSIAAELLELVE
Ga0150983_143144142	3300011120	Forest Soil	MTHDAVTHDVVLARGDGSRRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPKMDQSIDAELVE*
Ga0150983_148289431	3300011120	Forest Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIVALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE*
Ga0150983_157826482	3300011120	Forest Soil	VRREVGRWTMTQDAVTHDVVLARWDGPKRKFRIYGRSMPGNGDIIALPVDGRLISARVTVRSEKPEMEQSVEAELVELIE*
Ga0150985_1060619262	3300012212	Avena Fatua Rhizosphere	MRHDAVTHDVVLAHGNGSKRKFRIYGRPMPESGDTIALQVDGRLANARVTARSQNTKVDQTVDADWLNEAQAKSSG*
Ga0150984_1013322112	3300012469	Avena Fatua Rhizosphere	GSPNSWRSAMRHDAVTHDVVLAHGKVLKGSSESYGRPMPESGDTIALPVDGRLVNARVTARSQNTKVDQTVDAELVE*
Ga0137358_100677793	3300012582	Vadose Zone Soil	VTHDVVTHDVVLARGDGSKRKFRIYGRPMPRYGDTITLPVDGELIRTRVTVSSDKPEKDQSVDAELVELVE*
Ga0137358_102447503	3300012582	Vadose Zone Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMG
Ga0134078_101897953	3300014157	Grasslands Soil	VTNDAVTHDVALAIGNGSKRKFRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKKDQSVDAELV
Ga0137412_108617391	3300015242	Vadose Zone Soil	DVMLARGDGSKRKFRIYGRPMPENGHTIALPVDGRLINARVTARSAESEMDQSVDAELVELIE*
Ga0066662_108498791	3300018468	Grasslands Soil	VTHDAVTHDVVLARGDGSKRKFRIYGRPMPGYGDTITLPDDGQLIRARVTVGSDKPKKDQSVDAELVQLVE
Ga0066669_101810613	3300018482	Grasslands Soil	VTNDAVTHDVALAIGNGSKRKFRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKDQSVDAELVELVE
Ga0210407_100129441	3300020579	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVEL
Ga0210407_104639832	3300020579	Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIIALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE
Ga0210403_105148052	3300020580	Soil	MRQDAVTHDVVLARRDGPKRKFRIYGRPMPGNGDIIALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE
Ga0210403_106564381	3300020580	Soil	VTHDAVTHDVVLARGDGSKRKFRVYGRPMPGYGDTITLPVDGQLIRARVTVSSDKPETDQSVDAELV
Ga0210403_107057812	3300020580	Soil	MTHDAVTHDVVLARGDGSTRKFRVYGRPMPGYGDTITLPVDGQVIRARVTVSSEKPDMDQSADAELVELVE
Ga0210403_113241391	3300020580	Soil	MTHDAVTHDVVLARTDGSTRKFRVYGRPMPGSGDTITLPVDGQVIRARVTVSSEKPEIDQSVDAELVELVE
Ga0210399_110411563	3300020581	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPD
Ga0210399_112323881	3300020581	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVELAE
Ga0210395_103527132	3300020582	Soil	MTHDAVTHDVVLARGDGSTRKFRVYGRPMPGYGDTITLPVEGQVIRARVTVSSDKPKKDQSVDAELVELVE
Ga0210395_105080931	3300020582	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTMSSEKPDMGQSVDAELVELVA
Ga0210401_103949931	3300020583	Soil	MTHDAVTHDVVLARGDGSTRKFRVYGRPMPGYGDTITLPVEGQVIRARVTVSSDKPKK
Ga0210401_105579512	3300020583	Soil	MTHEAVTHDVVLTRGDGSQRRFRVYGRSMPGYGDTITLPVDGQVIRARVTVSPEKLEMDQSVDAELVELVE
Ga0210404_101911052	3300021088	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE
Ga0179584_14123203	3300021151	Vadose Zone Soil	VTQDAVIHDVVLARGDGSKRKFRIYGRPMPGYGDTITLPVDGQLIRARVTVNSDKPEKDQSVDAELVELVE
Ga0210405_100781146	3300021171	Soil	MTHDAVTHDVVLARGDGSRRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPKMDQSIDAELVELVE
Ga0210405_101079552	3300021171	Soil	MTHDAVTHDVVLARGDGSTRKFRVYGRPMPGYGDTITLPVEGQVIRARVTVSSDKPKKDQWVDAELVELVE
Ga0210405_107297622	3300021171	Soil	TRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE
Ga0210408_102415161	3300021178	Soil	VTHDAVTHDVVLARGDGSKRKFRVYGRPMPGYGDTITLPVDGQLIRARVTVSSDKPETDQSVDAELVELVE
Ga0210408_103502133	3300021178	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQTVDAELVELVE
Ga0210408_103932711	3300021178	Soil	MRQDAVTLDVVLARGDGPKRKFRIYGRPMPGNGDTIALPVDGRLISARVTVRSEKPEMEQSVDAELVELIE
Ga0210408_112878201	3300021178	Soil	MTHDAVTHDVVLARGDGSTRKFRVYGRPMPGYGDTITLPVDGQVIRARVTVSSEKPDMDQSADA
Ga0210396_100712515	3300021180	Soil	MRQDAVTHDVVLARRDGPKRKFRIYGRPMPGNGDIIALPVDGRLISAHVTVRSEKPDMEQSAEAELVELIE
Ga0210396_114192582	3300021180	Soil	MTHDAVTHDVVLTRGDGSQRRFRVYGRSMPGYGDTITLPVDGQVIRARVTVSPEKLEMDQSVDAELVELVE
Ga0210396_114222802	3300021180	Soil	HDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE
Ga0179583_10032012	3300021286	Vadose Zone Soil	VTHDVVTHDVVLARGDGSKRKFRIYGRPMPRYGDTITLPVDGQLIRTRVTVSSDKPEKDQSVDAELVELVE
Ga0179583_10101591	3300021286	Vadose Zone Soil	VRRTVGRSAMRHDAVTHDVVLAHGNGSKRKFRIYGRSMPESGDTIGLPVDGRLVNARVTVRSQNTKVDQTVDAELVE
Ga0179583_10869151	3300021286	Vadose Zone Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPDCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVELAE
Ga0179958_12144451	3300021315	Vadose Zone Soil	MRHDAVTHDVMLARGDGSKRKFRIYGRPMPENGHTIALPVDGRLINARVTARSAESEMDQSVDAELVELIE
Ga0210386_103085253	3300021406	Soil	MTHDAVTHDVVLARGDGSRRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPKMDQSIDAELVE
Ga0210394_106338462	3300021420	Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIIALPVDGRLISARVTVRSEKPDMEQSAEAELVELIE
Ga0210384_111584222	3300021432	Soil	MRQDAVTHDVMLARRDGPKRKFRIYGRPMPGNGDIIALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE
Ga0210410_109460692	3300021479	Soil	ARRDGPKRKFRIYGRPMPGNGDIVALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE
Ga0210409_109424551	3300021559	Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIVALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE
Ga0126371_100977464	3300021560	Tropical Forest Soil	VTLYAVTHDVVLARADGSKRKFRVYGRPVPEYGDTITWPVDVQLIKARITVRVDEPKVDQSIAAELLELVE
Ga0242670_10537441	3300022708	Soil	HDVVLARWDGPKRKFRIYSRPMPGNGDIIALPVNGRPMSARVTVRSEKPDMEQSAEAELVELIE
Ga0257162_10302561	3300026340	Soil	MTHDALTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAE
Ga0257149_10579081	3300026355	Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQ
Ga0209577_101275494	3300026552	Soil	VTHDAVTHDVVLARGDGSKRKFRIYGRPMPGYGDTITLPDDGQLIRARVTVSSDKPKKDQSVDAELVELVE
Ga0209577_103744061	3300026552	Soil	VTNDAVTHDVALAIGNGSKRKFRIYGRPMPGYGDTITLPLDGQLIRARVTVSSDGPKKDQSVDAELVELVE
Ga0208859_10001691	3300027069	Forest Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPMPGNGDIIALPVDGRLISARVTVRSEKPDMEQSVDAELVELAE
Ga0208095_10105131	3300027104	Forest Soil	MRQDAVTHDVVLARRDGPKRKFRIYGRPMPGNGDIIALPVNGRLMSARVTVRSEKPDMEQSAEAELVELIE
Ga0208241_10350972	3300027297	Forest Soil	MRHDATTHDVVLACGNDLKRKFRIYGRSMPGHGDTIVLPVDGRLISARVAVRPEEPKMKRSIDAELVALVE
Ga0209528_10860892	3300027610	Forest Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVELVE
Ga0209248_100600002	3300027729	Bog Forest Soil	MSHDAVTHDVVLTRGDGSERKFRIYGRPMPENGDTIELPVDGRLVNARVTVRSEKPEMDQSVAVELAELVE
Ga0209693_101170532	3300027855	Soil	MTHDAVTHDVVLTRGDGAQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE
Ga0209275_105864592	3300027884	Soil	MTQDAVTHDVVLARGDAPKRKFRIYGRPLPGNGDIIALPVDGRLMSARVTVRSEKPDMEQSAEAELVELIE
Ga0209275_107011962	3300027884	Soil	MTHDTVTHDVVLTRGDGSERKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPEMDQSVDAELVELVE
Ga0209380_102580771	3300027889	Soil	MTQDAVTHDVVLARGDAPKRKFRIYGWPLPGNGDIIALPVDGRLISARVTVRSEEPEMEQSVDAELVELVCRL
Ga0209488_107270001	3300027903	Vadose Zone Soil	MTHDAVTHDVVLTRGDGSQRKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPDMGQSVDAELVELA
Ga0308309_114883742	3300028906	Soil	MRHDATTHDVVLACGNDLKRKFRIYGRSMPGHGDTIVLPVDGRLISARVAVRPEEPKMERSIDAELVALVE
Ga0222749_100549313	3300029636	Soil	MRQDAVTHDVVLARRDGPKSKFRIYGRPMPGNGDIIALPVDGRLISAHVTVRSEKPDMEQSVDAELVELAE
Ga0222749_105388771	3300029636	Soil	TMRQDAVTHDVVLARWDGPKRKFRIYGRSMPGNGDIIALPVDGRLISARVTVRSEKPEMEQSVEAELVELIE
Ga0170834_1067958161	3300031057	Forest Soil	VTHDAVTHDVVLARGDGSKRKFRVYGRPMPGRGDTITLPVDGQLIRARVTVSSDKPETNQSVDAELVELVE
Ga0170824_1163399342	3300031231	Forest Soil	VTHDAVTHDVVLARGDGSKRKFRVYGRPMPGRGDTITLPVDGQLIRARVTVSSDKPETDQSVDAELVELVE
Ga0307477_103402292	3300031753	Hardwood Forest Soil	MRQDAVTHDVVLARWDGPKRKFRIYGRPLPGNGDIIALPVDGRLISARVTVRSEKPEMEQSVDAELVELAE
Ga0307475_106457043	3300031754	Hardwood Forest Soil	MTHDAVTHDVVLARGDGSRKKFRVYGRSMPGCGDTITLPVDGQVIRARVTVSSEKPKMDQSIDAELVELVE
Ga0318546_108324432	3300031771	Soil	MFKDPVTHDLLLARADGRKRKFRIYGRPMPEPGDAVTLPVDGQLIKARVVFSAEPEAASSIDAEVLELAD
Ga0318576_101372641	3300031796	Soil	VTHDPVTHDIVLARDDGSMRKFRIYGRPIPDPGDTVALAVDGQLIRARVISSAEPERASTVDGEALELAQKANWGGRIDAGPYSC
Ga0306923_112347972	3300031910	Soil	MRHDATTHDVVLAWGNGLKRKFRIYGRSKPWHGDTIALPVDGRLISARVTVHSERPEMDQSVEAELVELG
Ga0310916_116260532	3300031942	Soil	LTRRRSEVRRAVKRSTMRHDATTHDVVLAWGNGLKRKFRIYGRSKPWHGDTIALPVDGRLISARVTVHSERPEMDQSVEAELVELG
Ga0318533_113254002	3300032059	Soil	VTHDSVTHDIVLARGDGSKRKFRVYGRPMPEKGDTVTLPVDGQLIRARVVSSAEREIVSTVDGEALKLAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084557

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences